Multiple sequence alignment - TraesCS5A01G016300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G016300 chr5A 100.000 6219 0 0 1 6219 11964278 11970496 0.000000e+00 11485.0
1 TraesCS5A01G016300 chr5A 84.711 883 103 22 4504 5361 12041003 12041878 0.000000e+00 854.0
2 TraesCS5A01G016300 chr5A 85.256 780 96 12 4810 5580 12027074 12027843 0.000000e+00 785.0
3 TraesCS5A01G016300 chr5A 87.354 427 48 3 4381 4804 12134226 12134649 9.370000e-133 484.0
4 TraesCS5A01G016300 chr5A 81.119 572 91 13 4769 5331 12033710 12034273 5.720000e-120 442.0
5 TraesCS5A01G016300 chr5A 79.715 562 93 12 5309 5866 12041899 12042443 2.720000e-103 387.0
6 TraesCS5A01G016300 chr5A 79.749 558 84 19 4826 5363 12134704 12135252 1.640000e-100 377.0
7 TraesCS5A01G016300 chr5A 86.517 178 24 0 3893 4070 12132287 12132464 4.920000e-46 196.0
8 TraesCS5A01G016300 chr5A 95.652 46 2 0 2394 2439 11976793 11976838 2.400000e-09 75.0
9 TraesCS5A01G016300 chr5D 92.188 4903 243 55 845 5684 18188923 18193748 0.000000e+00 6804.0
10 TraesCS5A01G016300 chr5D 85.347 778 70 18 10 783 18180069 18180806 0.000000e+00 765.0
11 TraesCS5A01G016300 chr5D 89.051 548 27 12 5683 6216 18193871 18194399 0.000000e+00 649.0
12 TraesCS5A01G016300 chr5D 95.745 47 2 0 5919 5965 18194144 18194190 6.690000e-10 76.8
13 TraesCS5A01G016300 chr5B 90.893 1658 88 17 1411 3037 13722278 13723903 0.000000e+00 2167.0
14 TraesCS5A01G016300 chr5B 89.513 1459 114 15 3898 5333 13724857 13726299 0.000000e+00 1810.0
15 TraesCS5A01G016300 chr5B 91.566 913 58 10 2966 3872 13723897 13724796 0.000000e+00 1242.0
16 TraesCS5A01G016300 chr5B 86.454 657 47 13 779 1414 13721563 13722198 0.000000e+00 682.0
17 TraesCS5A01G016300 chr5B 91.071 336 21 5 4621 4947 13726859 13727194 4.420000e-121 446.0
18 TraesCS5A01G016300 chr5B 88.776 98 10 1 1436 1532 13722460 13722557 1.100000e-22 119.0
19 TraesCS5A01G016300 chr5B 96.970 66 1 1 4476 4541 13726805 13726869 6.590000e-20 110.0
20 TraesCS5A01G016300 chr5B 83.146 89 15 0 5093 5181 13727252 13727340 1.440000e-11 82.4
21 TraesCS5A01G016300 chr4A 82.353 85 9 4 5234 5318 643935155 643935077 1.120000e-07 69.4
22 TraesCS5A01G016300 chr4A 82.353 85 9 4 5234 5318 643954074 643953996 1.120000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G016300 chr5A 11964278 11970496 6218 False 11485.000000 11485 100.000000 1 6219 1 chr5A.!!$F1 6218
1 TraesCS5A01G016300 chr5A 12027074 12027843 769 False 785.000000 785 85.256000 4810 5580 1 chr5A.!!$F3 770
2 TraesCS5A01G016300 chr5A 12041003 12042443 1440 False 620.500000 854 82.213000 4504 5866 2 chr5A.!!$F5 1362
3 TraesCS5A01G016300 chr5A 12033710 12034273 563 False 442.000000 442 81.119000 4769 5331 1 chr5A.!!$F4 562
4 TraesCS5A01G016300 chr5A 12132287 12135252 2965 False 352.333333 484 84.540000 3893 5363 3 chr5A.!!$F6 1470
5 TraesCS5A01G016300 chr5D 18188923 18194399 5476 False 2509.933333 6804 92.328000 845 6216 3 chr5D.!!$F2 5371
6 TraesCS5A01G016300 chr5D 18180069 18180806 737 False 765.000000 765 85.347000 10 783 1 chr5D.!!$F1 773
7 TraesCS5A01G016300 chr5B 13721563 13727340 5777 False 832.300000 2167 89.798625 779 5333 8 chr5B.!!$F1 4554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 583 0.106116 ACCGTCTCACCCCTATCCTC 60.106 60.000 0.0 0.00 0.00 3.71 F
580 584 0.106167 CCGTCTCACCCCTATCCTCA 60.106 60.000 0.0 0.00 0.00 3.86 F
1626 1748 0.106335 CCCATCTAGTCAGCTGGCTG 59.894 60.000 30.8 19.45 44.86 4.85 F
1629 1751 0.907486 ATCTAGTCAGCTGGCTGCAA 59.093 50.000 30.8 15.62 45.94 4.08 F
2224 2354 1.734465 GAGTAGACAATGTGGCAGCAC 59.266 52.381 0.0 0.00 0.00 4.40 F
3713 3916 1.517242 CATGAGCTATTCTTCCGCCC 58.483 55.000 0.0 0.00 0.00 6.13 F
4401 6174 0.392998 AAGGCCGGTGAGCATTACTG 60.393 55.000 1.9 0.00 34.49 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1741 0.179936 ACTCTATCCTTGCAGCCAGC 59.820 55.000 0.00 0.0 45.96 4.85 R
1857 1980 1.956477 CCACAAACTGTTTAGCTGCCT 59.044 47.619 5.31 0.0 0.00 4.75 R
2686 2817 0.807667 CCAGCATCCTTTCCTCGTCG 60.808 60.000 0.00 0.0 0.00 5.12 R
3196 3396 1.351017 CCCACCTTCCTTAGCAGAACA 59.649 52.381 0.00 0.0 0.00 3.18 R
4166 4409 0.538057 ACCATGAACACAGGTGCCAG 60.538 55.000 0.00 0.0 33.57 4.85 R
5190 7028 1.264288 GAAGGCACAGAACAAACTCGG 59.736 52.381 0.00 0.0 0.00 4.63 R
5897 8601 0.107848 ATGAGGGGAGTAAAACCGCG 60.108 55.000 0.00 0.0 43.59 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.217038 ACTCATGCACCACGTCCCT 61.217 57.895 0.00 0.00 0.00 4.20
53 54 5.197451 TCTTTCATCCTCACTCTCCTCTAC 58.803 45.833 0.00 0.00 0.00 2.59
56 57 2.428544 TCCTCACTCTCCTCTACTGC 57.571 55.000 0.00 0.00 0.00 4.40
83 84 1.442148 GGTGACCCGTGCTATCTCC 59.558 63.158 0.00 0.00 0.00 3.71
100 101 2.348998 CTTCCTCGTGCAGGCCTT 59.651 61.111 0.00 0.00 43.08 4.35
103 104 4.379243 CCTCGTGCAGGCCTTCGT 62.379 66.667 0.00 0.00 34.56 3.85
107 108 1.447838 CGTGCAGGCCTTCGTGTAT 60.448 57.895 0.00 0.00 0.00 2.29
154 155 2.285180 CCCCTCTCCCTCCCTCTG 59.715 72.222 0.00 0.00 0.00 3.35
161 162 1.535444 TCCCTCCCTCTGCAACGAA 60.535 57.895 0.00 0.00 0.00 3.85
165 166 2.030562 CCCTCTGCAACGAACCGT 59.969 61.111 0.00 0.00 43.97 4.83
211 212 2.760385 GGGAGCTAGCACCGAGGT 60.760 66.667 22.76 0.00 0.00 3.85
232 233 2.271800 GAGCGTCGATTGAGGACAAAT 58.728 47.619 6.84 0.00 39.54 2.32
251 252 0.479378 TTTTGGCCTTCCCTAACCGT 59.521 50.000 3.32 0.00 0.00 4.83
264 265 2.497792 TAACCGTCGGTAGCCTCCCA 62.498 60.000 19.21 0.00 33.12 4.37
268 269 2.118732 TCGGTAGCCTCCCACACA 59.881 61.111 0.00 0.00 0.00 3.72
274 275 0.691078 TAGCCTCCCACACATCCCTC 60.691 60.000 0.00 0.00 0.00 4.30
278 279 3.009115 CCCACACATCCCTCCCGT 61.009 66.667 0.00 0.00 0.00 5.28
281 282 1.261938 CCACACATCCCTCCCGTACA 61.262 60.000 0.00 0.00 0.00 2.90
283 284 0.252103 ACACATCCCTCCCGTACACT 60.252 55.000 0.00 0.00 0.00 3.55
296 297 2.656069 TACACTGGAAGCCTCCCGC 61.656 63.158 0.00 0.00 41.64 6.13
297 298 4.785453 CACTGGAAGCCTCCCGCC 62.785 72.222 0.00 0.00 41.64 6.13
317 318 0.691078 TCTCCATCCCTTCCTTCCCG 60.691 60.000 0.00 0.00 0.00 5.14
319 320 2.193248 CATCCCTTCCTTCCCGCC 59.807 66.667 0.00 0.00 0.00 6.13
320 321 2.286121 ATCCCTTCCTTCCCGCCA 60.286 61.111 0.00 0.00 0.00 5.69
321 322 1.928567 ATCCCTTCCTTCCCGCCAA 60.929 57.895 0.00 0.00 0.00 4.52
322 323 1.289244 ATCCCTTCCTTCCCGCCAAT 61.289 55.000 0.00 0.00 0.00 3.16
323 324 0.622154 TCCCTTCCTTCCCGCCAATA 60.622 55.000 0.00 0.00 0.00 1.90
324 325 0.179018 CCCTTCCTTCCCGCCAATAG 60.179 60.000 0.00 0.00 0.00 1.73
325 326 0.819666 CCTTCCTTCCCGCCAATAGC 60.820 60.000 0.00 0.00 38.52 2.97
326 327 0.819666 CTTCCTTCCCGCCAATAGCC 60.820 60.000 0.00 0.00 38.78 3.93
327 328 1.279025 TTCCTTCCCGCCAATAGCCT 61.279 55.000 0.00 0.00 38.78 4.58
333 334 3.861797 CGCCAATAGCCTCCCCGT 61.862 66.667 0.00 0.00 38.78 5.28
335 336 2.829592 CCAATAGCCTCCCCGTCC 59.170 66.667 0.00 0.00 0.00 4.79
351 352 2.360350 CCCCTCATGCAAGTGCGT 60.360 61.111 0.00 0.00 45.83 5.24
371 372 1.994463 CAAGCCTGCCCTCCTTACT 59.006 57.895 0.00 0.00 0.00 2.24
375 376 1.004862 AGCCTGCCCTCCTTACTTTTC 59.995 52.381 0.00 0.00 0.00 2.29
390 394 0.984230 TTTTCCTCCTCCATGCTCGT 59.016 50.000 0.00 0.00 0.00 4.18
391 395 0.250234 TTTCCTCCTCCATGCTCGTG 59.750 55.000 0.00 0.00 0.00 4.35
393 397 2.202987 CTCCTCCATGCTCGTGCC 60.203 66.667 7.05 0.00 38.71 5.01
395 399 2.249413 CTCCTCCATGCTCGTGCCTT 62.249 60.000 7.05 0.00 38.71 4.35
396 400 1.817099 CCTCCATGCTCGTGCCTTC 60.817 63.158 7.05 0.00 38.71 3.46
398 402 2.825836 CCATGCTCGTGCCTTCCC 60.826 66.667 7.05 0.00 38.71 3.97
399 403 3.197790 CATGCTCGTGCCTTCCCG 61.198 66.667 7.05 0.00 38.71 5.14
441 445 1.141645 GTGTCGCACCGATGTTGTTA 58.858 50.000 0.00 0.00 38.42 2.41
451 455 2.028476 CCGATGTTGTTACTCTCCCACA 60.028 50.000 0.00 0.00 0.00 4.17
478 482 1.223487 GGCGAGCCACCCAATTCTA 59.777 57.895 9.58 0.00 35.81 2.10
481 485 1.334869 GCGAGCCACCCAATTCTAATG 59.665 52.381 0.00 0.00 0.00 1.90
493 497 2.587322 TTCTAATGGAGGCGGCGGTG 62.587 60.000 9.78 0.00 0.00 4.94
508 512 1.666553 GGTGGATCGCACGTTGTGA 60.667 57.895 0.24 4.21 41.54 3.58
509 513 1.626654 GGTGGATCGCACGTTGTGAG 61.627 60.000 0.24 0.00 40.54 3.51
517 521 0.880278 GCACGTTGTGAGGAAGCAGA 60.880 55.000 0.24 0.00 35.23 4.26
519 523 0.464036 ACGTTGTGAGGAAGCAGACA 59.536 50.000 0.00 0.00 0.00 3.41
543 547 5.316167 AGCTGGAGAAATGTGATACAAACA 58.684 37.500 0.00 0.00 0.00 2.83
544 548 5.413833 AGCTGGAGAAATGTGATACAAACAG 59.586 40.000 0.00 0.00 0.00 3.16
548 552 6.430925 TGGAGAAATGTGATACAAACAGAAGG 59.569 38.462 0.00 0.00 0.00 3.46
561 565 2.384828 ACAGAAGGGGACAAAAACCAC 58.615 47.619 0.00 0.00 0.00 4.16
572 576 0.466739 AAAAACCACCGTCTCACCCC 60.467 55.000 0.00 0.00 0.00 4.95
573 577 1.350310 AAAACCACCGTCTCACCCCT 61.350 55.000 0.00 0.00 0.00 4.79
574 578 0.472352 AAACCACCGTCTCACCCCTA 60.472 55.000 0.00 0.00 0.00 3.53
575 579 0.252558 AACCACCGTCTCACCCCTAT 60.253 55.000 0.00 0.00 0.00 2.57
576 580 0.686769 ACCACCGTCTCACCCCTATC 60.687 60.000 0.00 0.00 0.00 2.08
577 581 1.400530 CCACCGTCTCACCCCTATCC 61.401 65.000 0.00 0.00 0.00 2.59
578 582 0.397254 CACCGTCTCACCCCTATCCT 60.397 60.000 0.00 0.00 0.00 3.24
579 583 0.106116 ACCGTCTCACCCCTATCCTC 60.106 60.000 0.00 0.00 0.00 3.71
580 584 0.106167 CCGTCTCACCCCTATCCTCA 60.106 60.000 0.00 0.00 0.00 3.86
581 585 1.033574 CGTCTCACCCCTATCCTCAC 58.966 60.000 0.00 0.00 0.00 3.51
582 586 1.415200 GTCTCACCCCTATCCTCACC 58.585 60.000 0.00 0.00 0.00 4.02
583 587 1.062810 GTCTCACCCCTATCCTCACCT 60.063 57.143 0.00 0.00 0.00 4.00
584 588 1.062886 TCTCACCCCTATCCTCACCTG 60.063 57.143 0.00 0.00 0.00 4.00
585 589 0.716591 TCACCCCTATCCTCACCTGT 59.283 55.000 0.00 0.00 0.00 4.00
586 590 1.080498 TCACCCCTATCCTCACCTGTT 59.920 52.381 0.00 0.00 0.00 3.16
587 591 1.210478 CACCCCTATCCTCACCTGTTG 59.790 57.143 0.00 0.00 0.00 3.33
588 592 0.839946 CCCCTATCCTCACCTGTTGG 59.160 60.000 0.00 0.00 39.83 3.77
589 593 0.181350 CCCTATCCTCACCTGTTGGC 59.819 60.000 0.00 0.00 36.63 4.52
590 594 0.179073 CCTATCCTCACCTGTTGGCG 60.179 60.000 0.00 0.00 36.63 5.69
591 595 0.811616 CTATCCTCACCTGTTGGCGC 60.812 60.000 0.00 0.00 36.63 6.53
592 596 1.264749 TATCCTCACCTGTTGGCGCT 61.265 55.000 7.64 0.00 36.63 5.92
593 597 2.129555 ATCCTCACCTGTTGGCGCTT 62.130 55.000 7.64 0.00 36.63 4.68
594 598 2.328099 CCTCACCTGTTGGCGCTTC 61.328 63.158 7.64 0.00 36.63 3.86
595 599 2.281484 TCACCTGTTGGCGCTTCC 60.281 61.111 7.64 0.00 36.63 3.46
596 600 3.365265 CACCTGTTGGCGCTTCCC 61.365 66.667 7.64 0.00 36.63 3.97
605 609 1.378514 GGCGCTTCCCTCCATTTGA 60.379 57.895 7.64 0.00 0.00 2.69
609 613 1.881925 CGCTTCCCTCCATTTGACACA 60.882 52.381 0.00 0.00 0.00 3.72
621 625 5.593909 TCCATTTGACACAATTTCACAGTCT 59.406 36.000 0.00 0.00 0.00 3.24
629 633 4.448732 CACAATTTCACAGTCTGATCGACA 59.551 41.667 6.91 0.00 45.32 4.35
659 663 4.499696 GCGCTAGCATTTGGGATATGTTTT 60.500 41.667 16.45 0.00 44.35 2.43
671 675 7.292713 TGGGATATGTTTTTCATGGATGATG 57.707 36.000 0.00 0.00 37.91 3.07
682 686 7.949690 TTTCATGGATGATGATGTTTCTCTT 57.050 32.000 0.00 0.00 40.92 2.85
686 690 8.488668 TCATGGATGATGATGTTTCTCTTTCTA 58.511 33.333 0.00 0.00 36.06 2.10
702 706 5.543714 TCTTTCTACCAATACGAAGTTGCA 58.456 37.500 0.00 0.00 37.78 4.08
746 750 3.698029 AATTTGCACCATATCAGCGTC 57.302 42.857 0.00 0.00 0.00 5.19
751 755 2.693074 TGCACCATATCAGCGTCTAGAA 59.307 45.455 0.00 0.00 0.00 2.10
754 758 2.628657 ACCATATCAGCGTCTAGAACCC 59.371 50.000 0.00 0.00 0.00 4.11
755 759 2.028930 CCATATCAGCGTCTAGAACCCC 60.029 54.545 0.00 0.00 0.00 4.95
756 760 1.700955 TATCAGCGTCTAGAACCCCC 58.299 55.000 0.00 0.00 0.00 5.40
757 761 0.325296 ATCAGCGTCTAGAACCCCCA 60.325 55.000 0.00 0.00 0.00 4.96
758 762 0.543410 TCAGCGTCTAGAACCCCCAA 60.543 55.000 0.00 0.00 0.00 4.12
796 800 7.350110 AGTAATTGAAATTTGACCGCATTTG 57.650 32.000 0.00 0.00 0.00 2.32
799 803 6.857777 ATTGAAATTTGACCGCATTTGAAA 57.142 29.167 0.00 0.00 0.00 2.69
801 805 5.111989 TGAAATTTGACCGCATTTGAAACA 58.888 33.333 0.00 0.00 0.00 2.83
843 847 5.105752 GTCTTCAGTTAGCTGTGATGTAGG 58.894 45.833 6.47 0.00 43.05 3.18
850 868 7.342026 TCAGTTAGCTGTGATGTAGGAAATCTA 59.658 37.037 6.47 0.00 43.05 1.98
857 875 7.334421 GCTGTGATGTAGGAAATCTAGAAACAA 59.666 37.037 0.00 0.00 28.61 2.83
889 907 9.651913 AAATTAGGTTATGCATTCGAAATTTGT 57.348 25.926 3.54 0.00 0.00 2.83
968 990 6.401047 AATGGAATTCAGTTGGAGCATATG 57.599 37.500 7.93 0.00 0.00 1.78
1013 1035 3.041940 CAGTGGCCGACCGAACAC 61.042 66.667 0.00 7.86 39.70 3.32
1046 1070 3.518998 GTAGCTCGCCTCGCCTCA 61.519 66.667 0.00 0.00 0.00 3.86
1108 1132 2.976903 GATGCCTCATGCTCCGGC 60.977 66.667 0.00 7.82 44.02 6.13
1125 1149 4.227134 CCATCGCCCCGGACTGAG 62.227 72.222 0.73 0.00 0.00 3.35
1126 1150 4.227134 CATCGCCCCGGACTGAGG 62.227 72.222 0.73 0.00 0.00 3.86
1324 1350 1.167033 AGGACCCCCAAAAATCCTGT 58.833 50.000 0.00 0.00 40.18 4.00
1325 1351 2.364190 AGGACCCCCAAAAATCCTGTA 58.636 47.619 0.00 0.00 40.18 2.74
1342 1368 4.082081 TCCTGTATTTTTGCTGATTGGCTG 60.082 41.667 0.00 0.00 0.00 4.85
1358 1384 4.901197 TGGCTGTTGGATTCTAACACTA 57.099 40.909 11.13 4.94 34.58 2.74
1370 1396 3.381335 TCTAACACTACTTGGATCCCCC 58.619 50.000 9.90 0.00 0.00 5.40
1390 1416 2.292267 CAAAAGTGTGACCTGCTCTGT 58.708 47.619 0.00 0.00 0.00 3.41
1437 1549 9.708222 GTAGTTTGCTACATATTGATTCAGTTG 57.292 33.333 0.44 0.00 45.18 3.16
1498 1610 1.892474 GCTACAGGGATAGAGCAGGAG 59.108 57.143 0.00 0.00 34.96 3.69
1566 1688 5.304357 TCAAGACTAGTTTCTGGACACATGA 59.696 40.000 0.00 0.00 0.00 3.07
1592 1714 3.981071 TTCTGGTATTGCTGTAGCTGT 57.019 42.857 5.38 0.00 42.66 4.40
1619 1741 4.471904 TTGCTGTTACCCATCTAGTCAG 57.528 45.455 0.00 0.00 0.00 3.51
1626 1748 0.106335 CCCATCTAGTCAGCTGGCTG 59.894 60.000 30.80 19.45 44.86 4.85
1629 1751 0.907486 ATCTAGTCAGCTGGCTGCAA 59.093 50.000 30.80 15.62 45.94 4.08
1647 1769 5.537188 CTGCAAGGATAGAGTAGGAATCAC 58.463 45.833 0.00 0.00 0.00 3.06
1648 1770 4.345257 TGCAAGGATAGAGTAGGAATCACC 59.655 45.833 0.00 0.00 39.35 4.02
1650 1772 4.456662 AGGATAGAGTAGGAATCACCGT 57.543 45.455 0.00 0.00 44.74 4.83
1668 1790 3.566322 ACCGTATAGAGCTGCTCTGTAAG 59.434 47.826 35.76 31.85 41.37 2.34
1672 1794 5.449314 CGTATAGAGCTGCTCTGTAAGTGTT 60.449 44.000 35.76 13.86 41.37 3.32
1691 1813 4.072131 TGTTGAGAAATGCAGGAGTTACC 58.928 43.478 0.00 0.00 39.35 2.85
1716 1838 2.173782 TCTCCTGAGGCTAGAAGTCGAT 59.826 50.000 0.00 0.00 0.00 3.59
1720 1842 2.685388 CTGAGGCTAGAAGTCGATGACA 59.315 50.000 0.00 0.00 34.60 3.58
1731 1854 6.740110 AGAAGTCGATGACATATCTTGTACC 58.260 40.000 0.00 0.00 39.18 3.34
1745 1868 1.847818 TGTACCGTGATTGCGCTATC 58.152 50.000 22.51 22.51 0.00 2.08
1758 1881 5.922739 TTGCGCTATCACATCGATTTAAT 57.077 34.783 9.73 0.00 35.39 1.40
1790 1913 7.385752 CCATGTTTCATTCTTTGTGCAAATACT 59.614 33.333 0.00 0.00 0.00 2.12
1972 2098 5.163874 TGTTTGTTGTTAAGTGACGTGTACC 60.164 40.000 0.00 0.00 0.00 3.34
2013 2139 8.156165 TCCCTTTTGTGCTTTTTGATTGAATAT 58.844 29.630 0.00 0.00 0.00 1.28
2224 2354 1.734465 GAGTAGACAATGTGGCAGCAC 59.266 52.381 0.00 0.00 0.00 4.40
2316 2446 5.555017 ACACAATAGAGATCTTGCAAGTGT 58.445 37.500 25.19 16.30 0.00 3.55
2337 2467 6.474751 AGTGTAAGTTTGTGTCGTTCTTACTC 59.525 38.462 12.37 9.69 40.24 2.59
2339 2469 4.037858 AGTTTGTGTCGTTCTTACTCGT 57.962 40.909 0.00 0.00 0.00 4.18
2369 2499 7.861176 TGTTTTAACGCTATCCAACATTTTC 57.139 32.000 0.00 0.00 0.00 2.29
2465 2595 3.126858 GTGCGTATTGAATTCTTCAGCCA 59.873 43.478 7.05 0.00 41.38 4.75
2563 2694 6.161855 TGTGGCTTCGAGTGATTATTATCT 57.838 37.500 0.00 0.00 0.00 1.98
2564 2695 5.985530 TGTGGCTTCGAGTGATTATTATCTG 59.014 40.000 0.00 0.00 0.00 2.90
2565 2696 4.991056 TGGCTTCGAGTGATTATTATCTGC 59.009 41.667 0.00 0.00 0.00 4.26
2566 2697 5.221521 TGGCTTCGAGTGATTATTATCTGCT 60.222 40.000 0.00 0.00 0.00 4.24
2567 2698 5.347364 GGCTTCGAGTGATTATTATCTGCTC 59.653 44.000 6.73 6.73 33.85 4.26
2568 2699 5.347364 GCTTCGAGTGATTATTATCTGCTCC 59.653 44.000 9.54 0.00 33.75 4.70
2569 2700 6.656632 TTCGAGTGATTATTATCTGCTCCT 57.343 37.500 9.54 0.00 33.75 3.69
2570 2701 7.575909 GCTTCGAGTGATTATTATCTGCTCCTA 60.576 40.741 9.54 0.45 33.75 2.94
2615 2746 3.828451 ACTAGGCTGCATGTGAATTTGTT 59.172 39.130 0.50 0.00 0.00 2.83
2616 2747 3.308438 AGGCTGCATGTGAATTTGTTC 57.692 42.857 0.50 0.00 0.00 3.18
2617 2748 2.028748 AGGCTGCATGTGAATTTGTTCC 60.029 45.455 0.50 0.00 0.00 3.62
2618 2749 2.340337 GCTGCATGTGAATTTGTTCCC 58.660 47.619 0.00 0.00 0.00 3.97
2619 2750 2.288948 GCTGCATGTGAATTTGTTCCCA 60.289 45.455 0.00 0.00 0.00 4.37
2620 2751 3.618019 GCTGCATGTGAATTTGTTCCCAT 60.618 43.478 0.00 0.00 0.00 4.00
2686 2817 8.204836 TCATAGTTTTCTAGGAAATCTAGTGGC 58.795 37.037 0.00 0.00 44.45 5.01
2719 2850 1.985473 TGCTGGTGCTGTTCTTTGAT 58.015 45.000 0.00 0.00 40.48 2.57
2747 2878 2.373502 CCCTCTGTTTCTTCTCCCAACT 59.626 50.000 0.00 0.00 0.00 3.16
2772 2904 9.597170 CTTTCCTACTTGGTTAAATAGGACTAC 57.403 37.037 0.00 0.00 42.30 2.73
2810 2946 8.046708 TCCTGTACAACATAACTGCTCATATTT 58.953 33.333 0.00 0.00 0.00 1.40
2896 3040 3.118261 GCATACTCATCTCCACCCTTTCA 60.118 47.826 0.00 0.00 0.00 2.69
2963 3107 7.039313 AGTGAGAAAGGGTCATTTACAAAAC 57.961 36.000 0.00 0.00 0.00 2.43
2972 3116 6.543100 AGGGTCATTTACAAAACGTGTTCTTA 59.457 34.615 0.00 0.00 41.98 2.10
3033 3178 5.674525 AGCAGCTTTACTCTAATGCATGTA 58.325 37.500 0.00 0.00 40.21 2.29
3037 3182 7.210174 CAGCTTTACTCTAATGCATGTACCTA 58.790 38.462 0.00 0.00 40.21 3.08
3038 3183 7.710907 CAGCTTTACTCTAATGCATGTACCTAA 59.289 37.037 0.00 0.00 40.21 2.69
3039 3184 8.265055 AGCTTTACTCTAATGCATGTACCTAAA 58.735 33.333 0.00 0.00 40.21 1.85
3040 3185 8.889717 GCTTTACTCTAATGCATGTACCTAAAA 58.110 33.333 0.00 0.00 38.34 1.52
3067 3266 4.342862 TCTAGAAATATCACCAGCCTGC 57.657 45.455 0.00 0.00 0.00 4.85
3090 3289 9.970395 CTGCTATTAAAATTTTGATCATAGGCA 57.030 29.630 13.76 13.65 0.00 4.75
3091 3290 9.748708 TGCTATTAAAATTTTGATCATAGGCAC 57.251 29.630 13.76 3.39 0.00 5.01
3133 3333 5.471556 AATTTGCAATGTGATTCACCTCA 57.528 34.783 14.05 4.24 32.73 3.86
3161 3361 9.531942 TTCACGTTTAGAACTAACTGTATTCAA 57.468 29.630 0.00 0.00 0.00 2.69
3196 3396 8.223378 TCATTCTCATGGGTATATCATCCTTT 57.777 34.615 0.00 0.00 0.00 3.11
3271 3471 4.734652 GGAAGGCACCGGATTTGA 57.265 55.556 9.46 0.00 0.00 2.69
3278 3478 5.300792 GGAAGGCACCGGATTTGAATAATAA 59.699 40.000 9.46 0.00 0.00 1.40
3283 3483 5.977129 GCACCGGATTTGAATAATAACCTTG 59.023 40.000 9.46 0.00 0.00 3.61
3340 3540 5.519566 TGCACTCAGTTTTATGTTTGCTTTG 59.480 36.000 0.00 0.00 33.19 2.77
3350 3550 9.786224 GTTTTATGTTTGCTTTGTAATTTACGG 57.214 29.630 2.30 0.00 0.00 4.02
3399 3599 6.597832 ATTTTACACCCGAATCCAAAATGA 57.402 33.333 0.00 0.00 0.00 2.57
3418 3619 6.697641 AATGACTAAGGGTTTCTGTCCTTA 57.302 37.500 0.00 0.00 42.72 2.69
3420 3621 4.021719 TGACTAAGGGTTTCTGTCCTTACG 60.022 45.833 0.00 0.00 42.72 3.18
3464 3665 8.356657 TGATTTTGAACCAATTGACGAGTTTAT 58.643 29.630 7.12 0.00 0.00 1.40
3466 3667 8.568732 TTTTGAACCAATTGACGAGTTTATTC 57.431 30.769 7.12 0.00 0.00 1.75
3469 3670 7.581476 TGAACCAATTGACGAGTTTATTCTTC 58.419 34.615 7.12 0.00 0.00 2.87
3470 3671 7.444183 TGAACCAATTGACGAGTTTATTCTTCT 59.556 33.333 7.12 0.00 0.00 2.85
3471 3672 7.365840 ACCAATTGACGAGTTTATTCTTCTC 57.634 36.000 7.12 0.00 0.00 2.87
3472 3673 6.934645 ACCAATTGACGAGTTTATTCTTCTCA 59.065 34.615 7.12 0.00 0.00 3.27
3473 3674 7.607991 ACCAATTGACGAGTTTATTCTTCTCAT 59.392 33.333 7.12 0.00 0.00 2.90
3590 3793 6.426937 TGAGAAGTATGTTTACTGTTTCCTGC 59.573 38.462 0.00 0.00 38.69 4.85
3676 3879 3.785486 TGAGCACTTTCAGGATATCACG 58.215 45.455 4.83 0.00 0.00 4.35
3702 3905 4.826274 AACTGTAAGAAGCCATGAGCTA 57.174 40.909 8.81 0.00 46.29 3.32
3705 3908 5.363939 ACTGTAAGAAGCCATGAGCTATTC 58.636 41.667 8.81 4.89 46.29 1.75
3713 3916 1.517242 CATGAGCTATTCTTCCGCCC 58.483 55.000 0.00 0.00 0.00 6.13
3731 3934 2.671070 GCCCTGCGAAATTTCAACGAAT 60.671 45.455 17.99 0.00 0.00 3.34
3735 3938 6.491394 CCCTGCGAAATTTCAACGAATTATA 58.509 36.000 17.99 0.00 0.00 0.98
3740 3943 7.065324 TGCGAAATTTCAACGAATTATAGGTCT 59.935 33.333 17.99 0.00 0.00 3.85
3758 3961 8.870075 ATAGGTCTTTGGATAAATAGATTGCC 57.130 34.615 0.00 0.00 0.00 4.52
3872 4077 9.956720 AGCATGCTTTAGTGTCAATAAATAATC 57.043 29.630 16.30 0.00 0.00 1.75
3873 4078 9.734620 GCATGCTTTAGTGTCAATAAATAATCA 57.265 29.630 11.37 3.71 0.00 2.57
3921 4162 2.162408 GCCCTGTGTTTGCTCTATGAAC 59.838 50.000 0.00 0.00 0.00 3.18
3941 4182 6.464222 TGAACGACTCTTTCCTTGACATTAT 58.536 36.000 0.00 0.00 0.00 1.28
3949 4190 7.824779 ACTCTTTCCTTGACATTATGTTACCTC 59.175 37.037 0.00 0.00 0.00 3.85
4088 4330 6.422701 GGTTTGGTTTAATGTTTAGTTGCTCC 59.577 38.462 0.00 0.00 0.00 4.70
4102 4344 8.613482 GTTTAGTTGCTCCTATTTGTTATCTCC 58.387 37.037 0.00 0.00 0.00 3.71
4107 4349 6.357367 TGCTCCTATTTGTTATCTCCCTTTC 58.643 40.000 0.00 0.00 0.00 2.62
4154 4397 6.426328 TCAACACTTGCATTTGTTTCAAAGTT 59.574 30.769 10.05 0.00 33.59 2.66
4155 4398 6.799926 ACACTTGCATTTGTTTCAAAGTTT 57.200 29.167 0.00 0.00 0.00 2.66
4170 4413 5.296748 TCAAAGTTTCAAAATAAGCCTGGC 58.703 37.500 11.65 11.65 0.00 4.85
4209 4452 7.604927 GGTAATGACATCCAGTAAACACTGTAA 59.395 37.037 4.25 0.00 36.06 2.41
4210 4453 9.162764 GTAATGACATCCAGTAAACACTGTAAT 57.837 33.333 4.25 0.00 36.06 1.89
4211 4454 7.615582 ATGACATCCAGTAAACACTGTAATG 57.384 36.000 12.31 12.31 36.20 1.90
4212 4455 6.530120 TGACATCCAGTAAACACTGTAATGT 58.470 36.000 16.53 16.53 41.09 2.71
4213 4456 7.672240 TGACATCCAGTAAACACTGTAATGTA 58.328 34.615 16.54 8.13 39.81 2.29
4214 4457 7.601130 TGACATCCAGTAAACACTGTAATGTAC 59.399 37.037 16.54 12.71 39.81 2.90
4215 4458 7.446769 ACATCCAGTAAACACTGTAATGTACA 58.553 34.615 15.65 0.00 38.89 2.90
4218 4461 8.911918 TCCAGTAAACACTGTAATGTACATTT 57.088 30.769 25.31 8.97 38.15 2.32
4219 4462 9.344772 TCCAGTAAACACTGTAATGTACATTTT 57.655 29.630 25.31 14.08 38.15 1.82
4270 4513 1.030488 TAGGCCCTGAGAGAACGTCG 61.030 60.000 0.00 0.00 0.00 5.12
4294 4537 9.026074 TCGAAAATAAACATTGTTGGAAAAGAC 57.974 29.630 2.13 0.00 0.00 3.01
4309 4552 4.575236 GGAAAAGACGAGGTTGAAAGAAGT 59.425 41.667 0.00 0.00 0.00 3.01
4387 6159 2.594131 ACCAAGGAAGTACAAAAGGCC 58.406 47.619 0.00 0.00 0.00 5.19
4401 6174 0.392998 AAGGCCGGTGAGCATTACTG 60.393 55.000 1.90 0.00 34.49 2.74
4453 6229 4.592485 AATATTCCTAGTGCCGTCTGAG 57.408 45.455 0.00 0.00 0.00 3.35
4470 6246 5.468072 CGTCTGAGCTTATTTCCATATGCTT 59.532 40.000 0.00 0.00 43.25 3.91
4602 6379 6.421801 GCGGATTAAGCATTATTTTCTTGCAT 59.578 34.615 0.00 0.00 38.84 3.96
5005 6838 1.450312 GGATGTGAGTTCCCTGCCG 60.450 63.158 0.00 0.00 0.00 5.69
5028 6861 2.220133 CAGTTTGTAACCGACCGACTTG 59.780 50.000 0.00 0.00 0.00 3.16
5141 6979 4.180057 CACCAGCTGCTTTGTTGTTTTTA 58.820 39.130 8.66 0.00 0.00 1.52
5190 7028 6.758593 TGAACATTTGTACTGTTACTCGAC 57.241 37.500 0.00 0.00 36.98 4.20
5216 7079 6.258727 CGAGTTTGTTCTGTGCCTTCATATAT 59.741 38.462 0.00 0.00 0.00 0.86
5217 7080 7.438160 CGAGTTTGTTCTGTGCCTTCATATATA 59.562 37.037 0.00 0.00 0.00 0.86
5218 7081 8.438676 AGTTTGTTCTGTGCCTTCATATATAC 57.561 34.615 0.00 0.00 0.00 1.47
5219 7082 8.267894 AGTTTGTTCTGTGCCTTCATATATACT 58.732 33.333 0.00 0.00 0.00 2.12
5220 7083 8.552034 GTTTGTTCTGTGCCTTCATATATACTC 58.448 37.037 0.00 0.00 0.00 2.59
5221 7084 6.759272 TGTTCTGTGCCTTCATATATACTCC 58.241 40.000 0.00 0.00 0.00 3.85
5342 7209 2.831685 TTGTTGGTATGTCGTCAGCT 57.168 45.000 0.00 0.00 0.00 4.24
5430 7369 4.978099 AGGCATTGGGAAGTATACATCAG 58.022 43.478 10.09 0.00 0.00 2.90
5463 7403 3.119137 TGTGAACACGAGACTGATATGGG 60.119 47.826 0.00 0.00 0.00 4.00
5593 7737 8.435187 AGCTGAAACTTCATCATCCATTCTATA 58.565 33.333 0.00 0.00 36.46 1.31
5603 7747 5.597806 TCATCCATTCTATACGGTTGTGAC 58.402 41.667 0.00 0.00 0.00 3.67
5640 7784 9.743057 CTAGGACTTGTACATATTGAAGAAGAG 57.257 37.037 0.00 0.00 0.00 2.85
5735 8438 7.456902 GGGGTATCCAAGTTATAAGAGTATGGA 59.543 40.741 0.00 0.00 39.59 3.41
5897 8601 2.432510 AGTGGAGCTAGTATCACTTGCC 59.567 50.000 8.74 2.20 45.77 4.52
5915 8619 1.294138 CGCGGTTTTACTCCCCTCA 59.706 57.895 0.00 0.00 0.00 3.86
5930 8670 7.735326 ACTCCCCTCATACACCAATATATAC 57.265 40.000 0.00 0.00 0.00 1.47
5964 8704 7.123397 TCAGTGCTCCTTCTCATATATGGTATC 59.877 40.741 12.78 0.00 0.00 2.24
5965 8705 6.956435 AGTGCTCCTTCTCATATATGGTATCA 59.044 38.462 12.78 0.00 0.00 2.15
5966 8706 7.622878 AGTGCTCCTTCTCATATATGGTATCAT 59.377 37.037 12.78 0.00 37.40 2.45
5967 8707 8.918116 GTGCTCCTTCTCATATATGGTATCATA 58.082 37.037 12.78 0.00 39.85 2.15
5968 8708 8.918116 TGCTCCTTCTCATATATGGTATCATAC 58.082 37.037 12.78 0.00 38.53 2.39
5969 8709 8.918116 GCTCCTTCTCATATATGGTATCATACA 58.082 37.037 12.78 0.00 38.53 2.29
5976 8716 9.770097 CTCATATATGGTATCATACATTCCACC 57.230 37.037 12.78 0.00 38.53 4.61
5977 8717 9.278011 TCATATATGGTATCATACATTCCACCA 57.722 33.333 12.78 0.00 38.53 4.17
5978 8718 9.904198 CATATATGGTATCATACATTCCACCAA 57.096 33.333 4.68 0.00 39.36 3.67
5996 8736 9.496873 TTCCACCAATATATACATACTTTTCGG 57.503 33.333 0.00 0.00 0.00 4.30
5997 8737 8.653191 TCCACCAATATATACATACTTTTCGGT 58.347 33.333 0.00 0.00 0.00 4.69
5998 8738 8.717821 CCACCAATATATACATACTTTTCGGTG 58.282 37.037 0.00 0.00 37.88 4.94
5999 8739 8.227791 CACCAATATATACATACTTTTCGGTGC 58.772 37.037 0.00 0.00 32.16 5.01
6000 8740 8.154856 ACCAATATATACATACTTTTCGGTGCT 58.845 33.333 0.00 0.00 0.00 4.40
6001 8741 8.656849 CCAATATATACATACTTTTCGGTGCTC 58.343 37.037 0.00 0.00 0.00 4.26
6002 8742 8.656849 CAATATATACATACTTTTCGGTGCTCC 58.343 37.037 0.00 0.00 0.00 4.70
6003 8743 4.755266 ATACATACTTTTCGGTGCTCCT 57.245 40.909 2.85 0.00 0.00 3.69
6004 8744 3.418684 ACATACTTTTCGGTGCTCCTT 57.581 42.857 2.85 0.00 0.00 3.36
6005 8745 3.335579 ACATACTTTTCGGTGCTCCTTC 58.664 45.455 2.85 0.00 0.00 3.46
6006 8746 3.008049 ACATACTTTTCGGTGCTCCTTCT 59.992 43.478 2.85 0.00 0.00 2.85
6007 8747 2.171341 ACTTTTCGGTGCTCCTTCTC 57.829 50.000 2.85 0.00 0.00 2.87
6008 8748 1.416401 ACTTTTCGGTGCTCCTTCTCA 59.584 47.619 2.85 0.00 0.00 3.27
6009 8749 2.039084 ACTTTTCGGTGCTCCTTCTCAT 59.961 45.455 2.85 0.00 0.00 2.90
6010 8750 3.260884 ACTTTTCGGTGCTCCTTCTCATA 59.739 43.478 2.85 0.00 0.00 2.15
6011 8751 4.080863 ACTTTTCGGTGCTCCTTCTCATAT 60.081 41.667 2.85 0.00 0.00 1.78
6012 8752 5.128827 ACTTTTCGGTGCTCCTTCTCATATA 59.871 40.000 2.85 0.00 0.00 0.86
6013 8753 5.808366 TTTCGGTGCTCCTTCTCATATAT 57.192 39.130 2.85 0.00 0.00 0.86
6014 8754 4.790765 TCGGTGCTCCTTCTCATATATG 57.209 45.455 6.36 6.36 0.00 1.78
6015 8755 3.511540 TCGGTGCTCCTTCTCATATATGG 59.488 47.826 12.78 4.14 0.00 2.74
6016 8756 3.259374 CGGTGCTCCTTCTCATATATGGT 59.741 47.826 12.78 0.00 0.00 3.55
6017 8757 4.462834 CGGTGCTCCTTCTCATATATGGTA 59.537 45.833 12.78 0.00 0.00 3.25
6018 8758 5.127845 CGGTGCTCCTTCTCATATATGGTAT 59.872 44.000 12.78 0.00 0.00 2.73
6039 8779 8.020819 TGGTATCGATTTTCTTGACACATTTTC 58.979 33.333 1.71 0.00 0.00 2.29
6076 8816 1.882623 CTCTCCAAGCCAAAAGACACC 59.117 52.381 0.00 0.00 0.00 4.16
6083 8823 0.796927 GCCAAAAGACACCGAGCTAC 59.203 55.000 0.00 0.00 0.00 3.58
6094 8834 2.029244 CACCGAGCTACGCTTTTACATG 59.971 50.000 0.00 0.00 39.88 3.21
6119 8872 7.666804 TGGATTCCATGATACATATTCTTGTGG 59.333 37.037 0.00 0.00 0.00 4.17
6127 8880 8.821686 TGATACATATTCTTGTGGAAAATGGT 57.178 30.769 0.00 0.00 37.49 3.55
6150 8903 0.752658 TCATCTACTCGTGGGCATGG 59.247 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.876581 CATGAGTGCTGCATTGGGA 58.123 52.632 5.27 0.00 0.00 4.37
11 12 2.034879 GGGACGTGGTGCATGAGTG 61.035 63.158 0.00 0.00 0.00 3.51
30 31 4.329638 AGAGGAGAGTGAGGATGAAAGA 57.670 45.455 0.00 0.00 0.00 2.52
53 54 1.450312 GGTCACCGAATCCCAGCAG 60.450 63.158 0.00 0.00 0.00 4.24
83 84 1.743252 GAAGGCCTGCACGAGGAAG 60.743 63.158 5.69 0.00 46.33 3.46
100 101 0.548031 AGGGAGGTCGGTATACACGA 59.452 55.000 5.01 8.60 38.13 4.35
103 104 1.572415 AGGAAGGGAGGTCGGTATACA 59.428 52.381 5.01 0.00 0.00 2.29
107 108 0.324091 GTGAGGAAGGGAGGTCGGTA 60.324 60.000 0.00 0.00 0.00 4.02
178 179 4.704965 AGCTCCCCGTGATTATTTTCTAC 58.295 43.478 0.00 0.00 0.00 2.59
192 193 3.905678 CTCGGTGCTAGCTCCCCG 61.906 72.222 26.06 25.68 41.75 5.73
211 212 0.601057 TTGTCCTCAATCGACGCTCA 59.399 50.000 0.00 0.00 32.68 4.26
217 218 3.056891 GGCCAAAATTTGTCCTCAATCGA 60.057 43.478 0.00 0.00 33.32 3.59
218 219 3.056607 AGGCCAAAATTTGTCCTCAATCG 60.057 43.478 5.01 0.00 33.32 3.34
232 233 0.479378 ACGGTTAGGGAAGGCCAAAA 59.521 50.000 5.01 0.00 35.15 2.44
241 242 1.754234 GGCTACCGACGGTTAGGGA 60.754 63.158 27.06 5.43 37.09 4.20
246 247 3.073101 GGGAGGCTACCGACGGTT 61.073 66.667 27.06 6.77 37.09 4.44
251 252 1.305802 ATGTGTGGGAGGCTACCGA 60.306 57.895 12.11 0.00 0.00 4.69
264 265 0.252103 AGTGTACGGGAGGGATGTGT 60.252 55.000 0.00 0.00 0.00 3.72
268 269 0.042131 TTCCAGTGTACGGGAGGGAT 59.958 55.000 4.18 0.00 41.12 3.85
274 275 1.218316 GAGGCTTCCAGTGTACGGG 59.782 63.158 0.00 0.00 0.00 5.28
278 279 2.656069 GCGGGAGGCTTCCAGTGTA 61.656 63.158 17.76 0.00 45.98 2.90
296 297 1.135960 GGAAGGAAGGGATGGAGAGG 58.864 60.000 0.00 0.00 0.00 3.69
297 298 1.135960 GGGAAGGAAGGGATGGAGAG 58.864 60.000 0.00 0.00 0.00 3.20
317 318 2.111251 GACGGGGAGGCTATTGGC 59.889 66.667 0.00 0.00 40.90 4.52
319 320 2.819284 GGGGACGGGGAGGCTATTG 61.819 68.421 0.00 0.00 0.00 1.90
320 321 2.447959 GGGGACGGGGAGGCTATT 60.448 66.667 0.00 0.00 0.00 1.73
321 322 3.449126 AGGGGACGGGGAGGCTAT 61.449 66.667 0.00 0.00 0.00 2.97
322 323 4.153330 GAGGGGACGGGGAGGCTA 62.153 72.222 0.00 0.00 0.00 3.93
325 326 3.164269 CATGAGGGGACGGGGAGG 61.164 72.222 0.00 0.00 0.00 4.30
326 327 3.866582 GCATGAGGGGACGGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
327 328 4.731853 TGCATGAGGGGACGGGGA 62.732 66.667 0.00 0.00 0.00 4.81
333 334 2.046023 CGCACTTGCATGAGGGGA 60.046 61.111 6.60 0.00 42.21 4.81
335 336 2.872557 CACGCACTTGCATGAGGG 59.127 61.111 6.60 9.37 36.14 4.30
353 354 0.329596 AAGTAAGGAGGGCAGGCTTG 59.670 55.000 0.00 0.00 0.00 4.01
371 372 0.984230 ACGAGCATGGAGGAGGAAAA 59.016 50.000 0.00 0.00 0.00 2.29
375 376 2.202987 GCACGAGCATGGAGGAGG 60.203 66.667 0.00 0.00 41.58 4.30
396 400 4.899239 GGAGCGACATCCAGCGGG 62.899 72.222 0.00 0.00 39.34 6.13
398 402 4.899239 GGGGAGCGACATCCAGCG 62.899 72.222 4.43 0.00 41.52 5.18
399 403 3.474570 AGGGGAGCGACATCCAGC 61.475 66.667 4.43 0.00 41.52 4.85
400 404 2.503061 CAGGGGAGCGACATCCAG 59.497 66.667 4.43 0.00 41.52 3.86
401 405 3.785859 GCAGGGGAGCGACATCCA 61.786 66.667 4.43 0.00 41.52 3.41
402 406 3.112205 ATGCAGGGGAGCGACATCC 62.112 63.158 0.00 0.00 38.76 3.51
403 407 1.890979 CATGCAGGGGAGCGACATC 60.891 63.158 0.00 0.00 37.31 3.06
404 408 2.191375 CATGCAGGGGAGCGACAT 59.809 61.111 0.00 0.00 37.31 3.06
434 438 1.069513 CCGTGTGGGAGAGTAACAACA 59.930 52.381 0.00 0.00 38.47 3.33
436 440 1.416243 ACCGTGTGGGAGAGTAACAA 58.584 50.000 0.00 0.00 40.75 2.83
441 445 2.426023 GCAACCGTGTGGGAGAGT 59.574 61.111 0.00 0.00 40.75 3.24
463 467 3.217626 CTCCATTAGAATTGGGTGGCTC 58.782 50.000 0.00 0.00 0.00 4.70
466 470 2.310538 GCCTCCATTAGAATTGGGTGG 58.689 52.381 0.00 0.00 37.18 4.61
472 476 0.535102 CCGCCGCCTCCATTAGAATT 60.535 55.000 0.00 0.00 0.00 2.17
493 497 0.669318 TTCCTCACAACGTGCGATCC 60.669 55.000 0.00 0.00 32.98 3.36
500 504 0.464036 TGTCTGCTTCCTCACAACGT 59.536 50.000 0.00 0.00 0.00 3.99
503 507 1.141657 AGCTTGTCTGCTTCCTCACAA 59.858 47.619 0.00 0.00 40.93 3.33
508 512 0.324285 CTCCAGCTTGTCTGCTTCCT 59.676 55.000 0.00 0.00 41.98 3.36
509 513 0.322975 TCTCCAGCTTGTCTGCTTCC 59.677 55.000 0.00 0.00 41.98 3.46
517 521 4.910195 TGTATCACATTTCTCCAGCTTGT 58.090 39.130 0.00 0.00 0.00 3.16
519 523 5.769662 TGTTTGTATCACATTTCTCCAGCTT 59.230 36.000 0.00 0.00 0.00 3.74
543 547 1.752788 CGGTGGTTTTTGTCCCCTTCT 60.753 52.381 0.00 0.00 0.00 2.85
544 548 0.671796 CGGTGGTTTTTGTCCCCTTC 59.328 55.000 0.00 0.00 0.00 3.46
548 552 0.949397 GAGACGGTGGTTTTTGTCCC 59.051 55.000 0.00 0.00 31.75 4.46
561 565 0.106167 TGAGGATAGGGGTGAGACGG 60.106 60.000 0.00 0.00 0.00 4.79
572 576 0.811616 GCGCCAACAGGTGAGGATAG 60.812 60.000 0.00 0.00 34.82 2.08
573 577 1.220749 GCGCCAACAGGTGAGGATA 59.779 57.895 0.00 0.00 34.82 2.59
574 578 2.045926 GCGCCAACAGGTGAGGAT 60.046 61.111 0.00 0.00 34.82 3.24
575 579 2.731691 GAAGCGCCAACAGGTGAGGA 62.732 60.000 2.29 0.00 34.82 3.71
576 580 2.281761 AAGCGCCAACAGGTGAGG 60.282 61.111 2.29 0.00 34.82 3.86
577 581 2.328099 GGAAGCGCCAACAGGTGAG 61.328 63.158 2.29 0.00 34.82 3.51
578 582 2.281484 GGAAGCGCCAACAGGTGA 60.281 61.111 2.29 0.00 34.82 4.02
579 583 3.365265 GGGAAGCGCCAACAGGTG 61.365 66.667 2.29 0.00 38.95 4.00
580 584 3.553095 GAGGGAAGCGCCAACAGGT 62.553 63.158 2.29 0.00 38.95 4.00
581 585 2.747855 GAGGGAAGCGCCAACAGG 60.748 66.667 2.29 0.00 38.95 4.00
582 586 2.747855 GGAGGGAAGCGCCAACAG 60.748 66.667 2.29 0.00 38.95 3.16
583 587 2.424842 AATGGAGGGAAGCGCCAACA 62.425 55.000 2.29 0.00 38.95 3.33
584 588 1.250840 AAATGGAGGGAAGCGCCAAC 61.251 55.000 2.29 0.00 38.95 3.77
585 589 1.076549 AAATGGAGGGAAGCGCCAA 59.923 52.632 2.29 0.00 38.95 4.52
586 590 1.678635 CAAATGGAGGGAAGCGCCA 60.679 57.895 2.29 0.00 38.95 5.69
587 591 1.378514 TCAAATGGAGGGAAGCGCC 60.379 57.895 2.29 0.00 0.00 6.53
588 592 0.960364 TGTCAAATGGAGGGAAGCGC 60.960 55.000 0.00 0.00 0.00 5.92
589 593 0.804989 GTGTCAAATGGAGGGAAGCG 59.195 55.000 0.00 0.00 0.00 4.68
590 594 1.909700 TGTGTCAAATGGAGGGAAGC 58.090 50.000 0.00 0.00 0.00 3.86
591 595 5.010922 TGAAATTGTGTCAAATGGAGGGAAG 59.989 40.000 0.00 0.00 0.00 3.46
592 596 4.898265 TGAAATTGTGTCAAATGGAGGGAA 59.102 37.500 0.00 0.00 0.00 3.97
593 597 4.280677 GTGAAATTGTGTCAAATGGAGGGA 59.719 41.667 0.00 0.00 0.00 4.20
594 598 4.039004 TGTGAAATTGTGTCAAATGGAGGG 59.961 41.667 0.00 0.00 0.00 4.30
595 599 5.199024 TGTGAAATTGTGTCAAATGGAGG 57.801 39.130 0.00 0.00 0.00 4.30
596 600 5.835257 ACTGTGAAATTGTGTCAAATGGAG 58.165 37.500 0.00 0.00 0.00 3.86
605 609 4.449068 GTCGATCAGACTGTGAAATTGTGT 59.551 41.667 1.59 0.00 46.13 3.72
621 625 2.491621 CGCTCCAGCTGTCGATCA 59.508 61.111 13.81 0.00 39.32 2.92
659 663 7.832685 AGAAAGAGAAACATCATCATCCATGAA 59.167 33.333 0.00 0.00 45.06 2.57
671 675 8.475331 TTCGTATTGGTAGAAAGAGAAACATC 57.525 34.615 0.00 0.00 0.00 3.06
682 686 4.688879 CACTGCAACTTCGTATTGGTAGAA 59.311 41.667 0.00 0.00 0.00 2.10
686 690 1.535462 GCACTGCAACTTCGTATTGGT 59.465 47.619 0.00 0.00 0.00 3.67
723 727 4.819769 ACGCTGATATGGTGCAAATTTTT 58.180 34.783 0.00 0.00 0.00 1.94
724 728 4.158394 AGACGCTGATATGGTGCAAATTTT 59.842 37.500 0.00 0.00 0.00 1.82
734 738 2.028930 GGGGTTCTAGACGCTGATATGG 60.029 54.545 0.00 0.00 40.78 2.74
736 740 2.249139 GGGGGTTCTAGACGCTGATAT 58.751 52.381 0.00 0.00 40.78 1.63
769 773 4.452795 TGCGGTCAAATTTCAATTACTCGA 59.547 37.500 0.00 0.00 0.00 4.04
771 775 7.328249 TCAAATGCGGTCAAATTTCAATTACTC 59.672 33.333 0.00 0.00 0.00 2.59
773 777 7.344910 TCAAATGCGGTCAAATTTCAATTAC 57.655 32.000 0.00 0.00 0.00 1.89
870 888 5.760193 TGCACAAATTTCGAATGCATAAC 57.240 34.783 17.06 0.00 41.18 1.89
968 990 0.942252 GACCCAACGTCAAGTGGAAC 59.058 55.000 5.55 0.00 41.54 3.62
1108 1132 4.227134 CTCAGTCCGGGGCGATGG 62.227 72.222 0.00 0.00 0.00 3.51
1118 1142 1.079750 GTCTTCGTGGCCTCAGTCC 60.080 63.158 3.32 0.00 0.00 3.85
1122 1146 3.319198 GGGGTCTTCGTGGCCTCA 61.319 66.667 3.32 0.00 41.66 3.86
1125 1149 2.046217 GAAGGGGTCTTCGTGGCC 60.046 66.667 0.00 0.00 39.82 5.36
1324 1350 4.282957 TCCAACAGCCAATCAGCAAAAATA 59.717 37.500 0.00 0.00 34.23 1.40
1325 1351 3.071312 TCCAACAGCCAATCAGCAAAAAT 59.929 39.130 0.00 0.00 34.23 1.82
1342 1368 6.539103 GGATCCAAGTAGTGTTAGAATCCAAC 59.461 42.308 6.95 0.00 0.00 3.77
1370 1396 2.292267 ACAGAGCAGGTCACACTTTTG 58.708 47.619 1.66 0.00 0.00 2.44
1461 1573 3.571828 TGTAGCCAGATGACTAGATGAGC 59.428 47.826 0.00 0.00 0.00 4.26
1498 1610 5.283457 ACAGAGCAGTTCTATCCCATAAC 57.717 43.478 0.00 0.00 33.83 1.89
1541 1663 4.945246 TGTGTCCAGAAACTAGTCTTGAC 58.055 43.478 0.00 2.46 39.57 3.18
1566 1688 5.187967 AGCTACAGCAATACCAGAAACTAGT 59.812 40.000 3.70 0.00 45.16 2.57
1592 1714 6.136857 ACTAGATGGGTAACAGCAATCTCTA 58.863 40.000 0.00 0.00 38.15 2.43
1619 1741 0.179936 ACTCTATCCTTGCAGCCAGC 59.820 55.000 0.00 0.00 45.96 4.85
1626 1748 4.559704 CGGTGATTCCTACTCTATCCTTGC 60.560 50.000 0.00 0.00 0.00 4.01
1629 1751 4.456662 ACGGTGATTCCTACTCTATCCT 57.543 45.455 0.00 0.00 0.00 3.24
1647 1769 3.566322 ACTTACAGAGCAGCTCTATACGG 59.434 47.826 24.97 14.30 38.99 4.02
1648 1770 4.035792 ACACTTACAGAGCAGCTCTATACG 59.964 45.833 24.97 17.70 38.99 3.06
1650 1772 5.652452 TCAACACTTACAGAGCAGCTCTATA 59.348 40.000 24.97 15.88 38.99 1.31
1668 1790 4.083271 GGTAACTCCTGCATTTCTCAACAC 60.083 45.833 0.00 0.00 0.00 3.32
1672 1794 3.327757 ACTGGTAACTCCTGCATTTCTCA 59.672 43.478 0.00 0.00 38.49 3.27
1716 1838 4.808895 GCAATCACGGTACAAGATATGTCA 59.191 41.667 0.00 0.00 42.70 3.58
1720 1842 2.800544 GCGCAATCACGGTACAAGATAT 59.199 45.455 0.30 0.00 0.00 1.63
1745 1868 6.671190 ACATGGTGCATATTAAATCGATGTG 58.329 36.000 0.00 0.00 0.00 3.21
1758 1881 6.157904 CACAAAGAATGAAACATGGTGCATA 58.842 36.000 4.11 0.00 0.00 3.14
1857 1980 1.956477 CCACAAACTGTTTAGCTGCCT 59.044 47.619 5.31 0.00 0.00 4.75
1960 2086 3.126514 CAGAGTTATCGGTACACGTCACT 59.873 47.826 0.00 1.00 44.69 3.41
1961 2087 3.120060 ACAGAGTTATCGGTACACGTCAC 60.120 47.826 0.00 0.00 44.69 3.67
1972 2098 6.036083 CACAAAAGGGACATACAGAGTTATCG 59.964 42.308 0.00 0.00 0.00 2.92
2013 2139 7.067496 ACTCTGGAAGAAGATAGAAACACAA 57.933 36.000 0.00 0.00 46.34 3.33
2172 2302 5.543507 TTTCCACTTAAATGTTGGCATGT 57.456 34.783 0.00 0.00 35.15 3.21
2303 2433 5.821204 ACACAAACTTACACTTGCAAGATC 58.179 37.500 32.50 0.00 0.00 2.75
2316 2446 5.581605 ACGAGTAAGAACGACACAAACTTA 58.418 37.500 0.00 0.00 0.00 2.24
2337 2467 5.062934 TGGATAGCGTTAAAACAAGATGACG 59.937 40.000 0.00 0.00 0.00 4.35
2339 2469 6.428465 TGTTGGATAGCGTTAAAACAAGATGA 59.572 34.615 4.02 0.00 0.00 2.92
2369 2499 6.312918 CCAAGATTTTGAAATGCTGATGGAAG 59.687 38.462 0.00 0.00 36.36 3.46
2549 2680 7.169158 AGCTAGGAGCAGATAATAATCACTC 57.831 40.000 0.64 0.00 45.56 3.51
2563 2694 5.950544 TGTTTATAAAGGAGCTAGGAGCA 57.049 39.130 0.00 0.00 45.56 4.26
2564 2695 6.292150 ACATGTTTATAAAGGAGCTAGGAGC 58.708 40.000 0.00 0.00 42.84 4.70
2565 2696 8.616076 CAAACATGTTTATAAAGGAGCTAGGAG 58.384 37.037 22.87 1.64 0.00 3.69
2566 2697 7.556275 CCAAACATGTTTATAAAGGAGCTAGGA 59.444 37.037 22.87 0.00 0.00 2.94
2567 2698 7.556275 TCCAAACATGTTTATAAAGGAGCTAGG 59.444 37.037 22.87 14.63 0.00 3.02
2568 2699 8.398665 GTCCAAACATGTTTATAAAGGAGCTAG 58.601 37.037 22.87 6.50 0.00 3.42
2569 2700 8.107095 AGTCCAAACATGTTTATAAAGGAGCTA 58.893 33.333 22.87 2.19 0.00 3.32
2570 2701 6.948309 AGTCCAAACATGTTTATAAAGGAGCT 59.052 34.615 22.87 18.31 0.00 4.09
2615 2746 8.811341 AAAATATGGATAAAATGGGAATGGGA 57.189 30.769 0.00 0.00 0.00 4.37
2686 2817 0.807667 CCAGCATCCTTTCCTCGTCG 60.808 60.000 0.00 0.00 0.00 5.12
2810 2946 5.071250 AGTCAGGTCCACAACACTATGTTAA 59.929 40.000 0.00 0.00 38.77 2.01
2896 3040 2.093341 GCCAATCTGCATCAAATTGGGT 60.093 45.455 21.87 0.00 46.23 4.51
2963 3107 5.624344 TCTACCTTCTCACTAAGAACACG 57.376 43.478 0.00 0.00 39.12 4.49
3091 3290 9.305925 GCAAATTTTAGTTGGAATCAAGATAGG 57.694 33.333 0.00 0.00 32.92 2.57
3161 3361 6.715350 ACCCATGAGAATGAGGATATTGAT 57.285 37.500 0.00 0.00 0.00 2.57
3170 3370 7.434927 AGGATGATATACCCATGAGAATGAG 57.565 40.000 0.00 0.00 0.00 2.90
3196 3396 1.351017 CCCACCTTCCTTAGCAGAACA 59.649 52.381 0.00 0.00 0.00 3.18
3278 3478 4.653801 AGCAATTTAACCCTGTTTCAAGGT 59.346 37.500 0.00 0.00 35.34 3.50
3283 3483 8.094548 AGGAAATAAGCAATTTAACCCTGTTTC 58.905 33.333 0.00 0.00 37.93 2.78
3297 3497 5.010922 AGTGCATTGAACAGGAAATAAGCAA 59.989 36.000 0.00 0.00 0.00 3.91
3299 3499 5.064441 AGTGCATTGAACAGGAAATAAGC 57.936 39.130 0.00 0.00 0.00 3.09
3389 3589 6.314917 ACAGAAACCCTTAGTCATTTTGGAT 58.685 36.000 0.00 0.00 0.00 3.41
3399 3599 3.899980 ACGTAAGGACAGAAACCCTTAGT 59.100 43.478 0.00 0.00 43.44 2.24
3466 3667 9.921637 CCTATTAGCCTTTTAGTCTATGAGAAG 57.078 37.037 0.00 0.00 0.00 2.85
3590 3793 9.221775 GAAAGGTTTGCAACAAATATAGATACG 57.778 33.333 0.00 0.00 0.00 3.06
3613 3816 7.507616 ACTCTCTTGGAACTCTTTCTCTAGAAA 59.492 37.037 5.13 5.13 41.29 2.52
3676 3879 6.490534 GCTCATGGCTTCTTACAGTTAATTC 58.509 40.000 0.00 0.00 38.06 2.17
3713 3916 7.186804 ACCTATAATTCGTTGAAATTTCGCAG 58.813 34.615 13.34 6.93 31.50 5.18
3735 3938 6.915786 AGGCAATCTATTTATCCAAAGACCT 58.084 36.000 0.00 0.00 0.00 3.85
3740 3943 7.936847 ACATACGAGGCAATCTATTTATCCAAA 59.063 33.333 0.00 0.00 0.00 3.28
3758 3961 2.926200 CAGCAAACTCCTCACATACGAG 59.074 50.000 0.00 0.00 0.00 4.18
3828 4033 4.299586 TGCTGAATGGGTAAGAACATGA 57.700 40.909 0.00 0.00 0.00 3.07
3879 4084 7.552687 CAGGGCACATAAAAGAGACAATAACTA 59.447 37.037 0.00 0.00 0.00 2.24
3921 4162 6.727824 AACATAATGTCAAGGAAAGAGTCG 57.272 37.500 0.00 0.00 0.00 4.18
3941 4182 6.946340 ACACAATATCAGACATGAGGTAACA 58.054 36.000 0.00 0.00 39.29 2.41
4081 4323 5.685728 AGGGAGATAACAAATAGGAGCAAC 58.314 41.667 0.00 0.00 0.00 4.17
4119 4362 4.462508 TGCAAGTGTTGACATGGAAAAA 57.537 36.364 0.00 0.00 0.00 1.94
4154 4397 2.562298 CAGGTGCCAGGCTTATTTTGAA 59.438 45.455 14.15 0.00 0.00 2.69
4155 4398 2.170166 CAGGTGCCAGGCTTATTTTGA 58.830 47.619 14.15 0.00 0.00 2.69
4166 4409 0.538057 ACCATGAACACAGGTGCCAG 60.538 55.000 0.00 0.00 33.57 4.85
4170 4413 4.071423 TGTCATTACCATGAACACAGGTG 58.929 43.478 0.00 0.00 41.30 4.00
4218 4461 2.673775 TGATCTGCAGTGGGGAAAAA 57.326 45.000 14.67 0.00 0.00 1.94
4219 4462 2.673775 TTGATCTGCAGTGGGGAAAA 57.326 45.000 14.67 0.00 0.00 2.29
4223 4466 2.947652 CAACTATTGATCTGCAGTGGGG 59.052 50.000 14.67 1.85 0.00 4.96
4225 4468 4.763073 TCTCAACTATTGATCTGCAGTGG 58.237 43.478 14.67 0.00 39.30 4.00
4270 4513 9.026074 TCGTCTTTTCCAACAATGTTTATTTTC 57.974 29.630 0.00 0.00 0.00 2.29
4294 4537 5.122396 CCCATAAAGACTTCTTTCAACCTCG 59.878 44.000 7.50 0.00 44.34 4.63
4309 4552 3.439857 AGAACAAGCTGCCCATAAAGA 57.560 42.857 0.00 0.00 0.00 2.52
4387 6159 3.738282 GCTCTAATCAGTAATGCTCACCG 59.262 47.826 0.00 0.00 0.00 4.94
4425 6201 9.436957 CAGACGGCACTAGGAATATTAAATATT 57.563 33.333 0.00 0.00 38.12 1.28
4436 6212 0.612174 AGCTCAGACGGCACTAGGAA 60.612 55.000 0.00 0.00 0.00 3.36
4438 6214 1.103803 TAAGCTCAGACGGCACTAGG 58.896 55.000 0.00 0.00 0.00 3.02
4450 6226 5.448654 ACCAAGCATATGGAAATAAGCTCA 58.551 37.500 4.56 0.00 43.54 4.26
4453 6229 5.750067 CACAACCAAGCATATGGAAATAAGC 59.250 40.000 4.56 0.00 43.54 3.09
4470 6246 0.107263 TGCAGAAGCTGTCACAACCA 60.107 50.000 0.00 0.00 42.74 3.67
5028 6861 1.636340 CCGCGTTTCGATCATCACC 59.364 57.895 4.92 0.00 41.67 4.02
5141 6979 5.310451 ACTTCACGGGTACAATAACAACAT 58.690 37.500 0.00 0.00 0.00 2.71
5190 7028 1.264288 GAAGGCACAGAACAAACTCGG 59.736 52.381 0.00 0.00 0.00 4.63
5216 7079 6.019656 AGGACTCAATCAGATGTAGGAGTA 57.980 41.667 7.08 0.00 35.88 2.59
5217 7080 4.877773 AGGACTCAATCAGATGTAGGAGT 58.122 43.478 6.89 6.89 38.24 3.85
5218 7081 5.599732 CAAGGACTCAATCAGATGTAGGAG 58.400 45.833 0.00 0.00 0.00 3.69
5219 7082 4.141846 GCAAGGACTCAATCAGATGTAGGA 60.142 45.833 0.00 0.00 0.00 2.94
5220 7083 4.125703 GCAAGGACTCAATCAGATGTAGG 58.874 47.826 0.00 0.00 0.00 3.18
5221 7084 4.125703 GGCAAGGACTCAATCAGATGTAG 58.874 47.826 0.00 0.00 0.00 2.74
5430 7369 2.032799 TCGTGTTCACAAGGTTTGATGC 59.967 45.455 3.87 0.00 0.00 3.91
5463 7403 8.547967 TCTTGTACAGAAATGATACTTGAACC 57.452 34.615 0.00 0.00 0.00 3.62
5495 7435 2.104859 CGTCCATGGCACTGCAGAG 61.105 63.158 23.35 14.77 0.00 3.35
5593 7737 1.485066 GGGGATATGAGTCACAACCGT 59.515 52.381 0.00 0.00 0.00 4.83
5640 7784 5.514914 CCATGCAATTACGGATAAACAACAC 59.485 40.000 0.00 0.00 0.00 3.32
5651 7795 2.020720 TGCTAACCCATGCAATTACGG 58.979 47.619 0.00 0.00 36.15 4.02
5744 8447 6.094048 GCCAGCACACTCTTCTTAAATATGAA 59.906 38.462 0.00 0.00 0.00 2.57
5809 8513 1.066929 TGACAGACACACGCATAGCAT 60.067 47.619 0.00 0.00 0.00 3.79
5897 8601 0.107848 ATGAGGGGAGTAAAACCGCG 60.108 55.000 0.00 0.00 43.59 6.46
5930 8670 6.748333 TGAGAAGGAGCACTGAAAAATATG 57.252 37.500 0.00 0.00 0.00 1.78
5970 8710 9.496873 CCGAAAAGTATGTATATATTGGTGGAA 57.503 33.333 0.00 0.00 0.00 3.53
5971 8711 8.653191 ACCGAAAAGTATGTATATATTGGTGGA 58.347 33.333 0.00 0.00 0.00 4.02
5972 8712 8.717821 CACCGAAAAGTATGTATATATTGGTGG 58.282 37.037 8.41 0.05 37.54 4.61
5973 8713 8.227791 GCACCGAAAAGTATGTATATATTGGTG 58.772 37.037 10.68 10.68 42.56 4.17
5974 8714 8.154856 AGCACCGAAAAGTATGTATATATTGGT 58.845 33.333 0.00 0.00 0.00 3.67
5975 8715 8.547967 AGCACCGAAAAGTATGTATATATTGG 57.452 34.615 0.00 0.00 0.00 3.16
5976 8716 8.656849 GGAGCACCGAAAAGTATGTATATATTG 58.343 37.037 0.00 0.00 0.00 1.90
5977 8717 8.594550 AGGAGCACCGAAAAGTATGTATATATT 58.405 33.333 0.00 0.00 41.83 1.28
5978 8718 8.135382 AGGAGCACCGAAAAGTATGTATATAT 57.865 34.615 0.00 0.00 41.83 0.86
5979 8719 7.534723 AGGAGCACCGAAAAGTATGTATATA 57.465 36.000 0.00 0.00 41.83 0.86
5980 8720 6.420913 AGGAGCACCGAAAAGTATGTATAT 57.579 37.500 0.00 0.00 41.83 0.86
5981 8721 5.864418 AGGAGCACCGAAAAGTATGTATA 57.136 39.130 0.00 0.00 41.83 1.47
5982 8722 4.755266 AGGAGCACCGAAAAGTATGTAT 57.245 40.909 0.00 0.00 41.83 2.29
5983 8723 4.222145 AGAAGGAGCACCGAAAAGTATGTA 59.778 41.667 0.00 0.00 41.83 2.29
5984 8724 3.008049 AGAAGGAGCACCGAAAAGTATGT 59.992 43.478 0.00 0.00 41.83 2.29
5985 8725 3.600388 AGAAGGAGCACCGAAAAGTATG 58.400 45.455 0.00 0.00 41.83 2.39
5986 8726 3.260884 TGAGAAGGAGCACCGAAAAGTAT 59.739 43.478 0.00 0.00 41.83 2.12
5987 8727 2.631062 TGAGAAGGAGCACCGAAAAGTA 59.369 45.455 0.00 0.00 41.83 2.24
5988 8728 1.416401 TGAGAAGGAGCACCGAAAAGT 59.584 47.619 0.00 0.00 41.83 2.66
5989 8729 2.169832 TGAGAAGGAGCACCGAAAAG 57.830 50.000 0.00 0.00 41.83 2.27
5990 8730 2.859165 ATGAGAAGGAGCACCGAAAA 57.141 45.000 0.00 0.00 41.83 2.29
5991 8731 5.511373 CCATATATGAGAAGGAGCACCGAAA 60.511 44.000 14.54 0.00 41.83 3.46
5992 8732 4.021104 CCATATATGAGAAGGAGCACCGAA 60.021 45.833 14.54 0.00 41.83 4.30
5993 8733 3.511540 CCATATATGAGAAGGAGCACCGA 59.488 47.826 14.54 0.00 41.83 4.69
5994 8734 3.259374 ACCATATATGAGAAGGAGCACCG 59.741 47.826 14.54 0.00 41.83 4.94
5995 8735 4.899352 ACCATATATGAGAAGGAGCACC 57.101 45.455 14.54 0.00 0.00 5.01
5996 8736 6.095580 TCGATACCATATATGAGAAGGAGCAC 59.904 42.308 14.54 0.00 0.00 4.40
5997 8737 6.187682 TCGATACCATATATGAGAAGGAGCA 58.812 40.000 14.54 0.00 0.00 4.26
5998 8738 6.701145 TCGATACCATATATGAGAAGGAGC 57.299 41.667 14.54 0.00 0.00 4.70
6008 8748 9.996554 TGTGTCAAGAAAATCGATACCATATAT 57.003 29.630 0.00 0.00 0.00 0.86
6009 8749 9.996554 ATGTGTCAAGAAAATCGATACCATATA 57.003 29.630 0.00 0.00 0.00 0.86
6010 8750 8.908786 ATGTGTCAAGAAAATCGATACCATAT 57.091 30.769 0.00 0.00 0.00 1.78
6011 8751 8.731275 AATGTGTCAAGAAAATCGATACCATA 57.269 30.769 0.00 0.00 0.00 2.74
6012 8752 7.630242 AATGTGTCAAGAAAATCGATACCAT 57.370 32.000 0.00 0.00 0.00 3.55
6013 8753 7.447374 AAATGTGTCAAGAAAATCGATACCA 57.553 32.000 0.00 0.00 0.00 3.25
6014 8754 7.484959 GGAAAATGTGTCAAGAAAATCGATACC 59.515 37.037 0.00 0.00 0.00 2.73
6015 8755 8.237267 AGGAAAATGTGTCAAGAAAATCGATAC 58.763 33.333 0.00 0.00 0.00 2.24
6016 8756 8.335532 AGGAAAATGTGTCAAGAAAATCGATA 57.664 30.769 0.00 0.00 0.00 2.92
6017 8757 7.219484 AGGAAAATGTGTCAAGAAAATCGAT 57.781 32.000 0.00 0.00 0.00 3.59
6018 8758 6.633500 AGGAAAATGTGTCAAGAAAATCGA 57.367 33.333 0.00 0.00 0.00 3.59
6039 8779 3.565902 GGAGAGTGTGTTTGAGGAAAAGG 59.434 47.826 0.00 0.00 0.00 3.11
6094 8834 7.884877 TCCACAAGAATATGTATCATGGAATCC 59.115 37.037 0.00 0.00 30.84 3.01
6119 8872 7.545965 CCCACGAGTAGATGATATACCATTTTC 59.454 40.741 0.00 0.00 0.00 2.29
6127 8880 4.402474 CCATGCCCACGAGTAGATGATATA 59.598 45.833 0.00 0.00 0.00 0.86
6150 8903 2.128771 TGCAATTTCCTAGTGCCTCC 57.871 50.000 0.33 0.00 46.90 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.