Multiple sequence alignment - TraesCS5A01G015300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G015300 chr5A 100.000 8719 0 0 1 8719 10936157 10927439 0.000000e+00 16102.0
1 TraesCS5A01G015300 chr5B 93.848 3820 142 38 2711 6520 13278369 13274633 0.000000e+00 5666.0
2 TraesCS5A01G015300 chr5B 89.266 2711 221 39 10 2708 13281525 13278873 0.000000e+00 3330.0
3 TraesCS5A01G015300 chr5B 92.321 1706 67 22 6658 8300 13274439 13272735 0.000000e+00 2366.0
4 TraesCS5A01G015300 chr5B 92.272 427 27 2 8296 8717 13272453 13272028 1.250000e-167 601.0
5 TraesCS5A01G015300 chr5D 95.266 3126 109 19 3406 6520 13897398 13894301 0.000000e+00 4916.0
6 TraesCS5A01G015300 chr5D 93.871 1501 51 18 6658 8134 13894106 13892623 0.000000e+00 2224.0
7 TraesCS5A01G015300 chr5D 95.115 1351 46 9 1369 2708 13900741 13899400 0.000000e+00 2111.0
8 TraesCS5A01G015300 chr5D 96.115 695 27 0 2711 3405 13898896 13898202 0.000000e+00 1134.0
9 TraesCS5A01G015300 chr5D 81.608 995 129 31 356 1342 13901775 13900827 0.000000e+00 774.0
10 TraesCS5A01G015300 chr5D 84.267 375 33 12 1 356 13902189 13901822 8.380000e-90 342.0
11 TraesCS5A01G015300 chr5D 77.401 177 39 1 487 663 291507640 291507465 4.310000e-18 104.0
12 TraesCS5A01G015300 chr2D 90.131 1834 122 32 3661 5468 409259597 409261397 0.000000e+00 2329.0
13 TraesCS5A01G015300 chr2D 89.276 1893 103 33 893 2708 409255366 409257235 0.000000e+00 2279.0
14 TraesCS5A01G015300 chr2D 90.180 947 53 17 7399 8314 409269376 409270313 0.000000e+00 1197.0
15 TraesCS5A01G015300 chr2D 91.962 423 28 5 3098 3517 409258078 409258497 9.750000e-164 588.0
16 TraesCS5A01G015300 chr2D 81.987 755 60 28 5738 6429 409262031 409262772 9.820000e-159 571.0
17 TraesCS5A01G015300 chr2D 91.471 340 26 1 2708 3047 409257745 409258081 1.710000e-126 464.0
18 TraesCS5A01G015300 chr2D 80.124 322 40 14 6772 7085 409263203 409263508 1.470000e-52 219.0
19 TraesCS5A01G015300 chr2D 87.654 162 11 8 7081 7233 409269140 409269301 6.950000e-41 180.0
20 TraesCS5A01G015300 chr2D 96.842 95 1 2 5535 5627 409261422 409261516 3.260000e-34 158.0
21 TraesCS5A01G015300 chr2D 92.473 93 3 4 6658 6746 409263032 409263124 7.100000e-26 130.0
22 TraesCS5A01G015300 chr2D 78.378 185 33 3 574 757 409255111 409255289 7.150000e-21 113.0
23 TraesCS5A01G015300 chr2D 92.857 70 5 0 6450 6519 409262765 409262834 1.550000e-17 102.0
24 TraesCS5A01G015300 chr2D 92.857 56 4 0 563 618 299560061 299560006 2.020000e-11 82.4
25 TraesCS5A01G015300 chr2B 86.236 2027 153 60 6772 8719 484007182 484009161 0.000000e+00 2082.0
26 TraesCS5A01G015300 chr2B 88.550 1607 89 34 1178 2708 483996487 483998074 0.000000e+00 1860.0
27 TraesCS5A01G015300 chr2B 88.239 1488 113 30 3098 4559 483998919 484000370 0.000000e+00 1722.0
28 TraesCS5A01G015300 chr2B 90.162 925 60 16 4552 5468 484004748 484005649 0.000000e+00 1175.0
29 TraesCS5A01G015300 chr2B 81.686 759 61 34 5735 6429 484006007 484006751 2.130000e-155 560.0
30 TraesCS5A01G015300 chr2B 92.353 340 23 1 2708 3047 483998586 483998922 1.700000e-131 481.0
31 TraesCS5A01G015300 chr2B 87.838 222 22 5 893 1112 483995970 483996188 1.120000e-63 255.0
32 TraesCS5A01G015300 chr2B 95.604 91 1 3 5535 5623 484005674 484005763 9.120000e-30 143.0
33 TraesCS5A01G015300 chr2B 92.473 93 3 4 6658 6746 484007011 484007103 7.100000e-26 130.0
34 TraesCS5A01G015300 chr2B 94.286 70 4 0 6450 6519 484006744 484006813 3.330000e-19 108.0
35 TraesCS5A01G015300 chrUn 98.496 133 1 1 6527 6658 75376468 75376336 5.260000e-57 233.0
36 TraesCS5A01G015300 chr1D 81.592 201 35 2 468 667 307466593 307466792 1.950000e-36 165.0
37 TraesCS5A01G015300 chr2A 80.402 199 39 0 467 665 160193490 160193688 1.520000e-32 152.0
38 TraesCS5A01G015300 chr4B 79.268 164 27 5 487 648 85940115 85939957 3.330000e-19 108.0
39 TraesCS5A01G015300 chr4A 90.909 44 4 0 2713 2756 737159322 737159365 9.450000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G015300 chr5A 10927439 10936157 8718 True 16102.000000 16102 100.000000 1 8719 1 chr5A.!!$R1 8718
1 TraesCS5A01G015300 chr5B 13272028 13281525 9497 True 2990.750000 5666 91.926750 10 8717 4 chr5B.!!$R1 8707
2 TraesCS5A01G015300 chr5D 13892623 13902189 9566 True 1916.833333 4916 91.040333 1 8134 6 chr5D.!!$R2 8133
3 TraesCS5A01G015300 chr2D 409255111 409263508 8397 False 695.300000 2329 88.550100 574 7085 10 chr2D.!!$F1 6511
4 TraesCS5A01G015300 chr2D 409269140 409270313 1173 False 688.500000 1197 88.917000 7081 8314 2 chr2D.!!$F2 1233
5 TraesCS5A01G015300 chr2B 483995970 484000370 4400 False 1079.500000 1860 89.245000 893 4559 4 chr2B.!!$F1 3666
6 TraesCS5A01G015300 chr2B 484004748 484009161 4413 False 699.666667 2082 90.074500 4552 8719 6 chr2B.!!$F2 4167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 926 0.028770 CTGCGCGAAACAAAACCAGA 59.971 50.000 12.10 0.0 0.00 3.86 F
935 1014 0.037419 TTGCTGCGATAGACACTGCA 60.037 50.000 0.00 0.0 39.76 4.41 F
2418 2871 0.108329 TTAACTGCGCTGGCCTAGAC 60.108 55.000 18.98 0.0 38.85 2.59 F
3029 4000 0.454600 CATGTGAATGACTGCCCAGC 59.545 55.000 0.00 0.0 0.00 4.85 F
3554 6308 1.270947 CCACGCTGTACCCCACTTTTA 60.271 52.381 0.00 0.0 0.00 1.52 F
3603 6371 1.666209 GGTTGCACACTTGTGGCAGT 61.666 55.000 11.27 0.0 45.72 4.40 F
3609 6377 2.560504 CACACTTGTGGCAGTAGTTGA 58.439 47.619 5.72 0.0 42.10 3.18 F
5132 7953 0.886490 AGTCAGCTTGGAGGTTTGCG 60.886 55.000 0.00 0.0 0.00 4.85 F
5805 9055 1.069049 AGCAAAGCAAAAATCAGCGGT 59.931 42.857 0.00 0.0 35.48 5.68 F
6559 9883 0.179234 TCCTTTGGTGCAGAACGACA 59.821 50.000 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2709 3167 0.037697 TAGTGCAGCACCCACGTTAG 60.038 55.000 22.41 0.00 38.22 2.34 R
2838 3809 2.028020 GTCTTGTGTAACTCCAGGGAGG 60.028 54.545 19.02 2.24 45.88 4.30 R
4035 6841 0.400213 TTGGCACTAGAACACCTGGG 59.600 55.000 0.00 0.00 0.00 4.45 R
4301 7113 0.478942 TGGCTATACGCTCCTCTCCT 59.521 55.000 0.00 0.00 39.13 3.69 R
4516 7328 2.109774 CCCCTTAATTGGCTCATGCAA 58.890 47.619 0.00 0.00 41.91 4.08 R
5132 7953 2.213499 ACTTTGCTACACACACTCTGC 58.787 47.619 0.00 0.00 0.00 4.26 R
5444 8266 6.284475 GCTGATAGTTTAATCTGCAGTGAG 57.716 41.667 14.67 0.00 45.21 3.51 R
6034 9331 0.037877 ATGCTGCTGTTGCTCCTCTT 59.962 50.000 0.00 0.00 40.48 2.85 R
6623 9947 0.387202 TGCAACAAACCAATGGTCCG 59.613 50.000 4.95 2.04 33.12 4.79 R
8081 11609 0.393448 TGCTGCCTACGGTTTGTACA 59.607 50.000 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 66 7.776933 AAAGGAAAACAGAAAGAGAAAATGC 57.223 32.000 0.00 0.00 0.00 3.56
80 82 4.326504 AAATGCAGAAAAACCAGACCAG 57.673 40.909 0.00 0.00 0.00 4.00
142 144 0.598419 CTGAGTGAGCGAACACAGCA 60.598 55.000 13.19 9.96 42.45 4.41
150 152 1.772063 GCGAACACAGCAACCGAACT 61.772 55.000 0.00 0.00 34.19 3.01
161 163 2.635444 CAACCGAACTAGCAAAACACG 58.365 47.619 0.00 0.00 0.00 4.49
167 169 0.310854 ACTAGCAAAACACGCCAAGC 59.689 50.000 0.00 0.00 0.00 4.01
168 170 0.593128 CTAGCAAAACACGCCAAGCT 59.407 50.000 0.00 0.00 36.20 3.74
189 208 3.278574 TGGCATTATAGAACAGCACACC 58.721 45.455 0.00 0.00 0.00 4.16
295 315 4.411256 GGTATTTGAACCCGAGTATCCA 57.589 45.455 0.00 0.00 33.02 3.41
302 322 3.268330 GAACCCGAGTATCCAGGAAAAC 58.732 50.000 0.00 0.00 0.00 2.43
303 323 1.558294 ACCCGAGTATCCAGGAAAACC 59.442 52.381 0.00 0.00 0.00 3.27
326 346 5.476599 CCCAGAATGTTTAATGGACAGACAA 59.523 40.000 0.00 0.00 34.60 3.18
331 351 4.323417 TGTTTAATGGACAGACAAGCGAT 58.677 39.130 0.00 0.00 0.00 4.58
335 355 1.153349 GGACAGACAAGCGATCCCC 60.153 63.158 0.00 0.00 0.00 4.81
344 364 2.094675 CAAGCGATCCCCTTCAACAAT 58.905 47.619 0.00 0.00 0.00 2.71
354 421 3.834231 CCCCTTCAACAATCTGTTCCAAT 59.166 43.478 0.00 0.00 38.77 3.16
389 456 7.314393 GTTCTACTAGACCCTACTTTCTTGTG 58.686 42.308 0.00 0.00 31.52 3.33
477 553 3.596046 ACCCATTAGGATTCAAGTCCCAA 59.404 43.478 0.00 0.00 39.17 4.12
482 558 6.889722 CCATTAGGATTCAAGTCCCAAACTTA 59.110 38.462 0.00 0.00 41.22 2.24
483 559 7.561356 CCATTAGGATTCAAGTCCCAAACTTAT 59.439 37.037 0.00 0.00 41.22 1.73
484 560 8.624776 CATTAGGATTCAAGTCCCAAACTTATC 58.375 37.037 0.00 0.00 46.69 1.75
485 561 5.186198 AGGATTCAAGTCCCAAACTTATCG 58.814 41.667 0.00 0.00 46.69 2.92
502 578 6.842163 ACTTATCGTTGATGGTCACATTTTC 58.158 36.000 0.00 0.00 37.47 2.29
526 602 5.323371 TGAATTTATTTCAGGCCTTTCGG 57.677 39.130 0.00 0.00 39.44 4.30
552 628 2.614057 GTGCATTTATTGGGAGGAGACG 59.386 50.000 0.00 0.00 0.00 4.18
554 630 3.452990 TGCATTTATTGGGAGGAGACGTA 59.547 43.478 0.00 0.00 0.00 3.57
575 651 3.213249 ACCGTTGACTATGAAGACGTC 57.787 47.619 7.70 7.70 32.26 4.34
619 695 0.179073 ATGATGTGCCGGCTCAGTAC 60.179 55.000 32.06 24.73 0.00 2.73
653 729 6.557253 TGCTGATAAAGGTAGGGTGTACATAT 59.443 38.462 0.00 0.00 0.00 1.78
669 745 7.359264 GGTGTACATATGTGCGTTCATAGAATC 60.359 40.741 18.81 0.00 34.43 2.52
671 747 4.686091 ACATATGTGCGTTCATAGAATCGG 59.314 41.667 7.78 0.00 34.43 4.18
674 750 2.277084 GTGCGTTCATAGAATCGGGTT 58.723 47.619 0.00 0.00 0.00 4.11
699 775 1.514228 CGTGTATGCGAGCGTCTGT 60.514 57.895 0.00 0.00 0.00 3.41
707 783 3.159353 TGCGAGCGTCTGTATTTGTAT 57.841 42.857 0.00 0.00 0.00 2.29
711 787 5.577554 TGCGAGCGTCTGTATTTGTATTTTA 59.422 36.000 0.00 0.00 0.00 1.52
714 792 8.270799 GCGAGCGTCTGTATTTGTATTTTATTA 58.729 33.333 0.00 0.00 0.00 0.98
715 793 9.779237 CGAGCGTCTGTATTTGTATTTTATTAG 57.221 33.333 0.00 0.00 0.00 1.73
757 835 2.118228 GAGAGCTACATCTCGCAGTG 57.882 55.000 0.00 0.00 36.64 3.66
758 836 0.102120 AGAGCTACATCTCGCAGTGC 59.898 55.000 4.58 4.58 38.12 4.40
775 853 2.233654 GCGCGAGATACAGCACTGG 61.234 63.158 12.10 0.00 34.19 4.00
806 884 3.786101 CGCTGCGCAAGATGTACT 58.214 55.556 13.05 0.00 43.02 2.73
807 885 2.957871 CGCTGCGCAAGATGTACTA 58.042 52.632 13.05 0.00 43.02 1.82
811 889 2.735444 GCTGCGCAAGATGTACTAGTGA 60.735 50.000 13.05 0.00 43.02 3.41
848 926 0.028770 CTGCGCGAAACAAAACCAGA 59.971 50.000 12.10 0.00 0.00 3.86
867 946 2.097466 AGAACTGCACTGACGGTTTTTG 59.903 45.455 0.00 0.00 39.25 2.44
868 947 0.100503 ACTGCACTGACGGTTTTTGC 59.899 50.000 0.00 2.82 0.00 3.68
870 949 1.034838 TGCACTGACGGTTTTTGCCT 61.035 50.000 6.40 0.00 31.94 4.75
871 950 0.948678 GCACTGACGGTTTTTGCCTA 59.051 50.000 0.00 0.00 0.00 3.93
874 953 3.552068 GCACTGACGGTTTTTGCCTAAAT 60.552 43.478 0.00 0.00 0.00 1.40
876 955 4.679654 CACTGACGGTTTTTGCCTAAATTC 59.320 41.667 0.00 0.00 0.00 2.17
886 965 1.211949 TGCCTAAATTCCCCCTCGAAG 59.788 52.381 0.00 0.00 0.00 3.79
889 968 3.542648 CCTAAATTCCCCCTCGAAGAAC 58.457 50.000 0.00 0.00 34.09 3.01
891 970 3.518992 AAATTCCCCCTCGAAGAACAA 57.481 42.857 0.00 0.00 34.09 2.83
932 1011 2.350522 CCTTTTGCTGCGATAGACACT 58.649 47.619 8.69 0.00 39.76 3.55
935 1014 0.037419 TTGCTGCGATAGACACTGCA 60.037 50.000 0.00 0.00 39.76 4.41
1199 1525 1.151810 TCCCCTCCCTTTGCTCACT 60.152 57.895 0.00 0.00 0.00 3.41
1201 1527 0.543749 CCCCTCCCTTTGCTCACTAG 59.456 60.000 0.00 0.00 0.00 2.57
1233 1562 1.219522 AAAACGTCTCGCCTTGTCGG 61.220 55.000 0.00 0.00 0.00 4.79
1287 1616 2.187707 GCATGGTGTTCGATGAAATGC 58.812 47.619 0.00 5.28 32.72 3.56
1299 1628 3.941483 CGATGAAATGCCTTTCCTACAGT 59.059 43.478 11.34 0.00 40.09 3.55
1311 1646 5.123979 CCTTTCCTACAGTGCCACTTTTATC 59.876 44.000 0.00 0.00 0.00 1.75
1313 1648 4.575885 TCCTACAGTGCCACTTTTATCAC 58.424 43.478 0.00 0.00 0.00 3.06
1365 1717 4.556233 TGAAACTGAACATACGGTCTCAG 58.444 43.478 7.51 7.51 38.98 3.35
1373 1767 4.985538 ACATACGGTCTCAGTTCTTAGG 57.014 45.455 0.00 0.00 0.00 2.69
1397 1791 9.445878 AGGCTTAGGTTCTTACTTTGTTATTAC 57.554 33.333 0.00 0.00 0.00 1.89
1445 1849 3.615496 GCCAAAGAAAATGTAGCAGCATG 59.385 43.478 0.00 0.00 40.87 4.06
1455 1860 3.073678 TGTAGCAGCATGTACAAGTTGG 58.926 45.455 15.29 0.35 39.31 3.77
1574 1979 7.364522 TCTTGCAACTGATGTAACTTATGAC 57.635 36.000 0.00 0.00 30.00 3.06
1713 2120 0.895530 TCTAGTTTGGTCAGCCTCCG 59.104 55.000 0.00 0.00 35.27 4.63
1740 2147 3.937706 CTGGAAGCACTATCTCTTGTTGG 59.062 47.826 0.00 0.00 0.00 3.77
1764 2183 7.144000 GGAACATTCATGAGATTTAATCCTGC 58.856 38.462 0.78 0.00 0.00 4.85
1777 2196 9.277783 AGATTTAATCCTGCTATCATACACAAC 57.722 33.333 0.78 0.00 0.00 3.32
1823 2242 4.289672 ACTCACAAGATCATGTTTACCCCT 59.710 41.667 0.00 0.00 0.00 4.79
1857 2276 6.334989 TGTGGCTTGATCATTTTCAATCATC 58.665 36.000 0.00 0.00 35.20 2.92
1870 2289 9.582431 CATTTTCAATCATCTAAGCAAGATTGT 57.418 29.630 12.13 0.00 42.62 2.71
1945 2364 9.559958 CTGTTACTGTCATGTTTATCCATTTTC 57.440 33.333 0.00 0.00 0.00 2.29
1969 2388 5.411669 CCTTTGTGTAAACCTCACAGGATAC 59.588 44.000 0.00 0.69 44.71 2.24
2222 2656 4.694339 AGCTGGCTTAACTTAATAGGACG 58.306 43.478 0.00 0.00 0.00 4.79
2303 2737 6.937392 AGGTTTGTACTAGGATTCAGACTTC 58.063 40.000 0.00 0.00 0.00 3.01
2388 2823 2.069273 CTCCGTTTGGCTCTGTAAGTG 58.931 52.381 0.00 0.00 31.96 3.16
2418 2871 0.108329 TTAACTGCGCTGGCCTAGAC 60.108 55.000 18.98 0.00 38.85 2.59
2708 3166 5.947228 TGCTGCAGGTATTATTAGATTGC 57.053 39.130 17.12 0.00 0.00 3.56
2709 3167 4.761739 TGCTGCAGGTATTATTAGATTGCC 59.238 41.667 17.12 0.00 0.00 4.52
2726 3697 2.325082 CCTAACGTGGGTGCTGCAC 61.325 63.158 24.02 24.02 0.00 4.57
2838 3809 2.901042 CGGGCTAGAGTTGGACCC 59.099 66.667 0.00 0.00 37.19 4.46
2899 3870 1.065126 GGCTCTAAGGTCAATGGCACT 60.065 52.381 0.00 0.00 0.00 4.40
3012 3983 8.455903 ACTGCTTTGTCAGTTATATTATGCAT 57.544 30.769 3.79 3.79 44.26 3.96
3029 4000 0.454600 CATGTGAATGACTGCCCAGC 59.545 55.000 0.00 0.00 0.00 4.85
3296 4269 7.574607 ACTAAATTAGCTACCTATGTGCCTTT 58.425 34.615 0.00 0.00 0.00 3.11
3380 4355 5.279456 GGGGACAGCATAAAAACAAAGACAT 60.279 40.000 0.00 0.00 0.00 3.06
3554 6308 1.270947 CCACGCTGTACCCCACTTTTA 60.271 52.381 0.00 0.00 0.00 1.52
3603 6371 1.666209 GGTTGCACACTTGTGGCAGT 61.666 55.000 11.27 0.00 45.72 4.40
3609 6377 2.560504 CACACTTGTGGCAGTAGTTGA 58.439 47.619 5.72 0.00 42.10 3.18
3621 6389 4.878397 GGCAGTAGTTGACTAGCAAATGAT 59.122 41.667 9.20 0.00 38.44 2.45
3622 6390 5.355350 GGCAGTAGTTGACTAGCAAATGATT 59.645 40.000 9.20 0.00 38.44 2.57
3808 6610 9.983024 TTATTTCATTTAACCCTGACTCCATTA 57.017 29.630 0.00 0.00 0.00 1.90
3849 6652 7.259290 TCAACTCAGTAATTTTCAACTGTCC 57.741 36.000 6.09 0.00 42.96 4.02
3850 6653 6.826231 TCAACTCAGTAATTTTCAACTGTCCA 59.174 34.615 6.09 0.00 42.96 4.02
3910 6713 7.161404 TCAAGTGAGTGCATTTGTAGAAGTAT 58.839 34.615 0.00 0.00 41.10 2.12
4159 6965 8.248945 CCAACAATTATCTGAAGAGCAAGATTT 58.751 33.333 0.00 0.00 0.00 2.17
4163 6969 9.635520 CAATTATCTGAAGAGCAAGATTTTTGT 57.364 29.630 0.00 0.00 0.00 2.83
4190 7001 6.791303 TGCCTTTAATGATTATCACGGTTTC 58.209 36.000 0.00 0.00 0.00 2.78
4198 7009 6.730960 TGATTATCACGGTTTCTTTACCAC 57.269 37.500 0.00 0.00 38.12 4.16
4301 7113 4.501071 GAGCTGTTAAAGATTCGGTGGTA 58.499 43.478 0.00 0.00 0.00 3.25
4516 7328 5.198965 ACTGGCTCTTATCAGAAAATGCAT 58.801 37.500 0.00 0.00 35.20 3.96
4584 7396 4.082026 AGGTGCTATCATGCAAACTTTTCC 60.082 41.667 0.00 0.00 45.12 3.13
4617 7429 8.045507 CCATCAGCTGACATTAGGATGTATTAT 58.954 37.037 20.97 0.00 46.27 1.28
4794 7607 4.037690 GCTTGCATTATTTGTAGCTTCGG 58.962 43.478 0.00 0.00 34.37 4.30
4842 7662 6.485171 AGATGCTACCCTCTTTGTTAATTGT 58.515 36.000 0.00 0.00 0.00 2.71
4850 7670 6.605594 ACCCTCTTTGTTAATTGTTCTGTTGA 59.394 34.615 0.00 0.00 0.00 3.18
4924 7744 5.255687 TGTGAAGTGCTGGTGATTGATATT 58.744 37.500 0.00 0.00 0.00 1.28
5132 7953 0.886490 AGTCAGCTTGGAGGTTTGCG 60.886 55.000 0.00 0.00 0.00 4.85
5272 8093 8.831715 TGGCATGTCTTATGTTACTATACATG 57.168 34.615 0.00 0.00 43.39 3.21
5416 8238 4.608948 AGTATAGTACCATGGCAGAAGC 57.391 45.455 13.04 0.00 41.10 3.86
5444 8266 6.849588 AATTTTGAAGCCACAATCTTTGAC 57.150 33.333 0.00 0.00 0.00 3.18
5494 8316 5.637006 AGGTTTGCTTAAAATATGTGCGA 57.363 34.783 0.00 0.00 0.00 5.10
5675 8925 2.570752 CCCACCTATCCCATCATCTCTG 59.429 54.545 0.00 0.00 0.00 3.35
5788 9038 3.849951 GGCGTAGGGCTAGCAGCA 61.850 66.667 18.24 0.00 44.75 4.41
5805 9055 1.069049 AGCAAAGCAAAAATCAGCGGT 59.931 42.857 0.00 0.00 35.48 5.68
5975 9264 1.699752 CAGGGGAAGCCTGGGAAAT 59.300 57.895 0.00 0.00 0.00 2.17
6043 9340 0.539051 GGCTAGCAGAAAGAGGAGCA 59.461 55.000 18.24 0.00 0.00 4.26
6054 9351 0.677098 AGAGGAGCAACAGCAGCATG 60.677 55.000 0.00 0.00 40.87 4.06
6057 9354 1.975407 GAGCAACAGCAGCATGGGT 60.975 57.895 0.00 0.00 35.86 4.51
6086 9407 3.868077 GGTGATTTGCTCTAGTGCTACTG 59.132 47.826 17.08 0.00 0.00 2.74
6128 9449 3.189495 GCTAGCAAGTTTCCTCCTTGTTC 59.811 47.826 10.63 0.00 41.08 3.18
6150 9471 4.887655 TCTCTTTTGTTTTCCCCTCACTTC 59.112 41.667 0.00 0.00 0.00 3.01
6167 9488 2.205074 CTTCATCACGTCCCATAGCAC 58.795 52.381 0.00 0.00 0.00 4.40
6404 9726 5.321927 TGAAAGGTAATCTCACCCTTTTCC 58.678 41.667 4.55 0.00 46.01 3.13
6457 9781 6.485830 TCTATTCCATCTCTCGAACCAAAT 57.514 37.500 0.00 0.00 0.00 2.32
6464 9788 5.521735 CCATCTCTCGAACCAAATACTGAAG 59.478 44.000 0.00 0.00 0.00 3.02
6520 9844 2.116827 ACACAGGAACGAAACCAACA 57.883 45.000 0.00 0.00 0.00 3.33
6523 9847 4.200874 ACACAGGAACGAAACCAACATAA 58.799 39.130 0.00 0.00 0.00 1.90
6524 9848 4.035909 ACACAGGAACGAAACCAACATAAC 59.964 41.667 0.00 0.00 0.00 1.89
6525 9849 4.035792 CACAGGAACGAAACCAACATAACA 59.964 41.667 0.00 0.00 0.00 2.41
6526 9850 4.825085 ACAGGAACGAAACCAACATAACAT 59.175 37.500 0.00 0.00 0.00 2.71
6528 9852 6.148811 ACAGGAACGAAACCAACATAACATAG 59.851 38.462 0.00 0.00 0.00 2.23
6529 9853 6.370442 CAGGAACGAAACCAACATAACATAGA 59.630 38.462 0.00 0.00 0.00 1.98
6530 9854 7.065803 CAGGAACGAAACCAACATAACATAGAT 59.934 37.037 0.00 0.00 0.00 1.98
6532 9856 9.052759 GGAACGAAACCAACATAACATAGATAT 57.947 33.333 0.00 0.00 0.00 1.63
6555 9879 2.730550 CCAATCCTTTGGTGCAGAAC 57.269 50.000 0.00 0.00 46.27 3.01
6556 9880 1.068333 CCAATCCTTTGGTGCAGAACG 60.068 52.381 0.00 0.00 46.27 3.95
6557 9881 1.879380 CAATCCTTTGGTGCAGAACGA 59.121 47.619 0.00 0.00 0.00 3.85
6558 9882 1.523758 ATCCTTTGGTGCAGAACGAC 58.476 50.000 0.00 0.00 0.00 4.34
6559 9883 0.179234 TCCTTTGGTGCAGAACGACA 59.821 50.000 0.00 0.00 0.00 4.35
6560 9884 1.202758 TCCTTTGGTGCAGAACGACAT 60.203 47.619 0.00 0.00 0.00 3.06
6561 9885 1.069022 CCTTTGGTGCAGAACGACATG 60.069 52.381 0.00 0.00 0.00 3.21
6562 9886 1.872952 CTTTGGTGCAGAACGACATGA 59.127 47.619 0.00 0.00 0.00 3.07
6563 9887 2.183478 TTGGTGCAGAACGACATGAT 57.817 45.000 0.00 0.00 0.00 2.45
6564 9888 1.441738 TGGTGCAGAACGACATGATG 58.558 50.000 0.00 0.00 0.00 3.07
6566 9890 0.798159 GTGCAGAACGACATGATGCA 59.202 50.000 0.00 3.16 44.10 3.96
6567 9891 1.741528 TGCAGAACGACATGATGCAT 58.258 45.000 0.00 0.00 41.65 3.96
6568 9892 1.399089 TGCAGAACGACATGATGCATG 59.601 47.619 2.46 5.90 46.18 4.06
6583 9907 7.740246 CATGATGCATGTAGTATCTTGATGTC 58.260 38.462 2.46 0.00 42.91 3.06
6584 9908 7.059202 TGATGCATGTAGTATCTTGATGTCT 57.941 36.000 2.46 0.00 39.75 3.41
6585 9909 6.927381 TGATGCATGTAGTATCTTGATGTCTG 59.073 38.462 2.46 0.00 39.75 3.51
6587 9911 5.129320 TGCATGTAGTATCTTGATGTCTGGT 59.871 40.000 0.00 0.00 0.00 4.00
6588 9912 5.464722 GCATGTAGTATCTTGATGTCTGGTG 59.535 44.000 0.00 0.00 0.00 4.17
6589 9913 6.683861 GCATGTAGTATCTTGATGTCTGGTGA 60.684 42.308 0.00 0.00 0.00 4.02
6590 9914 6.456795 TGTAGTATCTTGATGTCTGGTGAG 57.543 41.667 0.00 0.00 0.00 3.51
6600 9924 2.156343 GTCTGGTGAGACTTGTGGTC 57.844 55.000 0.00 0.00 44.73 4.02
6601 9925 1.412710 GTCTGGTGAGACTTGTGGTCA 59.587 52.381 0.00 0.00 46.72 4.02
6602 9926 2.037772 GTCTGGTGAGACTTGTGGTCAT 59.962 50.000 0.00 0.00 46.72 3.06
6603 9927 2.037641 TCTGGTGAGACTTGTGGTCATG 59.962 50.000 0.00 0.00 46.72 3.07
6605 9929 2.172505 TGGTGAGACTTGTGGTCATGTT 59.827 45.455 0.00 0.00 46.72 2.71
6606 9930 2.549754 GGTGAGACTTGTGGTCATGTTG 59.450 50.000 0.00 0.00 46.72 3.33
6607 9931 3.206150 GTGAGACTTGTGGTCATGTTGT 58.794 45.455 0.00 0.00 46.72 3.32
6609 9933 4.211374 GTGAGACTTGTGGTCATGTTGTAC 59.789 45.833 0.00 0.00 46.72 2.90
6611 9935 4.380531 AGACTTGTGGTCATGTTGTACTG 58.619 43.478 0.00 0.00 46.72 2.74
6612 9936 2.878406 ACTTGTGGTCATGTTGTACTGC 59.122 45.455 0.00 0.00 0.00 4.40
6613 9937 1.890876 TGTGGTCATGTTGTACTGCC 58.109 50.000 0.00 0.00 0.00 4.85
6614 9938 1.165270 GTGGTCATGTTGTACTGCCC 58.835 55.000 0.00 0.00 0.00 5.36
6615 9939 0.767998 TGGTCATGTTGTACTGCCCA 59.232 50.000 0.00 0.00 0.00 5.36
6616 9940 1.143889 TGGTCATGTTGTACTGCCCAA 59.856 47.619 0.00 0.00 0.00 4.12
6627 9951 3.680156 TGCCCAAGCATTTCGGAC 58.320 55.556 0.00 0.00 46.52 4.79
6629 9953 1.976474 GCCCAAGCATTTCGGACCA 60.976 57.895 0.00 0.00 39.53 4.02
6631 9955 1.185315 CCCAAGCATTTCGGACCATT 58.815 50.000 0.00 0.00 0.00 3.16
6632 9956 1.135024 CCCAAGCATTTCGGACCATTG 60.135 52.381 0.00 0.00 0.00 2.82
6633 9957 1.135024 CCAAGCATTTCGGACCATTGG 60.135 52.381 0.00 0.00 0.00 3.16
6637 9961 2.029110 AGCATTTCGGACCATTGGTTTG 60.029 45.455 10.29 5.88 35.25 2.93
6638 9962 2.288763 GCATTTCGGACCATTGGTTTGT 60.289 45.455 10.29 0.00 35.25 2.83
6641 9965 0.671251 TCGGACCATTGGTTTGTTGC 59.329 50.000 10.29 0.00 35.25 4.17
6642 9966 0.387202 CGGACCATTGGTTTGTTGCA 59.613 50.000 10.29 0.00 35.25 4.08
6643 9967 1.864565 GGACCATTGGTTTGTTGCAC 58.135 50.000 10.29 0.00 35.25 4.57
6644 9968 1.137872 GGACCATTGGTTTGTTGCACA 59.862 47.619 10.29 0.00 35.25 4.57
6646 9970 1.830477 ACCATTGGTTTGTTGCACACT 59.170 42.857 1.37 0.00 27.29 3.55
6647 9971 2.203401 CCATTGGTTTGTTGCACACTG 58.797 47.619 0.00 0.00 0.00 3.66
6648 9972 2.159128 CCATTGGTTTGTTGCACACTGA 60.159 45.455 0.00 0.00 0.00 3.41
6650 9974 3.667497 TTGGTTTGTTGCACACTGAAA 57.333 38.095 0.00 0.00 0.00 2.69
6652 9976 4.991153 TGGTTTGTTGCACACTGAAATA 57.009 36.364 0.00 0.00 0.00 1.40
6653 9977 5.528043 TGGTTTGTTGCACACTGAAATAT 57.472 34.783 0.00 0.00 0.00 1.28
6654 9978 6.641169 TGGTTTGTTGCACACTGAAATATA 57.359 33.333 0.00 0.00 0.00 0.86
6655 9979 7.225784 TGGTTTGTTGCACACTGAAATATAT 57.774 32.000 0.00 0.00 0.00 0.86
6656 9980 7.312154 TGGTTTGTTGCACACTGAAATATATC 58.688 34.615 0.00 0.00 0.00 1.63
6793 10234 6.057533 TGGCAGAAGTTGATAATATGGTCTG 58.942 40.000 0.00 0.00 35.46 3.51
6855 10299 2.253051 TGTGCTGCATCCACGTGTG 61.253 57.895 15.65 8.35 36.01 3.82
6911 10359 5.793030 ATCTATCCTACCACAGCAGTTAC 57.207 43.478 0.00 0.00 0.00 2.50
7031 10498 0.474660 AGGCCCATATCCAGAGTCCC 60.475 60.000 0.00 0.00 0.00 4.46
7033 10500 1.122019 GCCCATATCCAGAGTCCCGT 61.122 60.000 0.00 0.00 0.00 5.28
7187 10675 5.596836 TTTTGCTCAATCCTTTGTGTTCT 57.403 34.783 0.00 0.00 34.32 3.01
7264 10777 5.460419 CGTCTTCAAGATAGCACAGGATAAC 59.540 44.000 0.00 0.00 0.00 1.89
7270 10783 7.847096 TCAAGATAGCACAGGATAACAAACTA 58.153 34.615 0.00 0.00 0.00 2.24
7296 10809 7.777095 ACACAGAACTTCCTACTATCATCTTC 58.223 38.462 0.00 0.00 0.00 2.87
7315 10828 3.228188 TCCTGTCCAATCAAAAGCTGT 57.772 42.857 0.00 0.00 0.00 4.40
7439 10958 6.180472 GTTTCCTCCAAGTCATCTATTTCCA 58.820 40.000 0.00 0.00 0.00 3.53
7523 11042 2.493278 GTGCAGTACAGCCATGGAATTT 59.507 45.455 18.40 0.00 0.00 1.82
7710 11229 1.241990 CCTCGACGACCTTCCTGACA 61.242 60.000 0.00 0.00 0.00 3.58
7770 11289 3.053095 AGGTGATTGCAATCTTCCAGGAT 60.053 43.478 33.55 21.41 36.39 3.24
7796 11316 7.698836 AGTTTTGTTGTGAAGTAATGCAATC 57.301 32.000 0.00 0.00 0.00 2.67
7867 11388 2.796651 CTGCGCAGATTCCCTTGC 59.203 61.111 33.66 0.00 0.00 4.01
7890 11411 1.896660 TTTCTCCGCTTGCCGCTTT 60.897 52.632 0.00 0.00 36.13 3.51
7946 11471 1.868109 GCTGTTTCTTGTTTTCCCCGC 60.868 52.381 0.00 0.00 0.00 6.13
7956 11481 0.107081 TTTTCCCCGCGTTCTTCTCA 59.893 50.000 4.92 0.00 0.00 3.27
7989 11514 1.087501 GAGATTTCGGTGGAAGTGGC 58.912 55.000 0.00 0.00 32.80 5.01
8005 11530 1.953686 GTGGCTGTGCAAGGTCTTTAA 59.046 47.619 0.00 0.00 0.00 1.52
8016 11542 7.284489 TGTGCAAGGTCTTTAAGAAACTTACAT 59.716 33.333 13.16 0.00 27.16 2.29
8062 11590 2.069165 GCAGGTGGGTTCCTTGGACT 62.069 60.000 0.00 0.00 35.37 3.85
8070 11598 0.106149 GTTCCTTGGACTGTCGGTGT 59.894 55.000 1.07 0.00 0.00 4.16
8119 11647 2.876091 CAAGAATGATGCAGCAACAGG 58.124 47.619 9.54 0.00 0.00 4.00
8120 11648 2.490509 CAAGAATGATGCAGCAACAGGA 59.509 45.455 9.54 0.00 0.00 3.86
8123 11651 4.529897 AGAATGATGCAGCAACAGGATTA 58.470 39.130 9.54 0.00 0.00 1.75
8124 11652 4.579340 AGAATGATGCAGCAACAGGATTAG 59.421 41.667 9.54 0.00 0.00 1.73
8125 11653 2.019249 TGATGCAGCAACAGGATTAGC 58.981 47.619 0.00 0.00 0.00 3.09
8126 11654 2.295885 GATGCAGCAACAGGATTAGCT 58.704 47.619 0.00 0.00 37.95 3.32
8218 11774 4.438148 TGGTAAGCTGAAAAAGGTTTTGC 58.562 39.130 0.00 0.00 44.21 3.68
8262 11820 5.247862 TCACTCATGATGCAAGCTAGAAAA 58.752 37.500 0.00 0.00 0.00 2.29
8317 12161 9.516546 AAAACTAAGCAAACTAGCCTAAACTAT 57.483 29.630 0.00 0.00 34.23 2.12
8321 12165 4.640647 AGCAAACTAGCCTAAACTATTGCC 59.359 41.667 0.00 0.00 38.22 4.52
8325 12169 7.201785 GCAAACTAGCCTAAACTATTGCCATAA 60.202 37.037 0.00 0.00 34.36 1.90
8327 12171 8.996651 AACTAGCCTAAACTATTGCCATAAAT 57.003 30.769 0.00 0.00 0.00 1.40
8352 12196 1.304547 CACAGAGTCCGGAGACCCT 60.305 63.158 3.06 0.00 44.72 4.34
8363 12207 0.688087 GGAGACCCTCTTCCACCGAT 60.688 60.000 0.00 0.00 0.00 4.18
8401 12245 1.965754 GAGGAGAGCCGTGGCAGATT 61.966 60.000 14.29 0.00 44.88 2.40
8415 12259 5.293324 CGTGGCAGATTACACTAGCAAAATA 59.707 40.000 0.00 0.00 35.51 1.40
8544 12394 7.072030 GTGCTTTGTCATCTTACAGTTACTTG 58.928 38.462 0.00 0.00 0.00 3.16
8560 12410 6.375455 CAGTTACTTGCCTATTTTGAGACCAT 59.625 38.462 0.00 0.00 0.00 3.55
8603 12453 4.621038 GCTACTTCCTCTGTCCAGGTTTAC 60.621 50.000 0.00 0.00 34.76 2.01
8661 12518 9.692749 GGCCCAAAATTAGAGTTATAAATTAGC 57.307 33.333 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.024302 GGTTTTCTTCGGTTTTCACTCGAT 60.024 41.667 0.00 0.00 32.80 3.59
6 7 3.310501 GGTTTTCTTCGGTTTTCACTCGA 59.689 43.478 0.00 0.00 0.00 4.04
7 8 3.064271 TGGTTTTCTTCGGTTTTCACTCG 59.936 43.478 0.00 0.00 0.00 4.18
8 9 4.625972 TGGTTTTCTTCGGTTTTCACTC 57.374 40.909 0.00 0.00 0.00 3.51
9 10 5.592104 ATTGGTTTTCTTCGGTTTTCACT 57.408 34.783 0.00 0.00 0.00 3.41
11 12 8.950208 ATTTTATTGGTTTTCTTCGGTTTTCA 57.050 26.923 0.00 0.00 0.00 2.69
12 13 9.036671 TGATTTTATTGGTTTTCTTCGGTTTTC 57.963 29.630 0.00 0.00 0.00 2.29
13 14 8.950208 TGATTTTATTGGTTTTCTTCGGTTTT 57.050 26.923 0.00 0.00 0.00 2.43
64 66 3.243201 GCTGAACTGGTCTGGTTTTTCTG 60.243 47.826 1.69 0.00 0.00 3.02
80 82 8.244802 TCTTCTTCTATTGTACACTAGCTGAAC 58.755 37.037 13.89 0.00 0.00 3.18
114 116 0.947244 CGCTCACTCAGGTTTGCTTT 59.053 50.000 0.00 0.00 0.00 3.51
115 117 0.106708 TCGCTCACTCAGGTTTGCTT 59.893 50.000 0.00 0.00 0.00 3.91
117 119 0.235926 GTTCGCTCACTCAGGTTTGC 59.764 55.000 0.00 0.00 0.00 3.68
118 120 1.261619 GTGTTCGCTCACTCAGGTTTG 59.738 52.381 3.27 0.00 35.68 2.93
120 122 0.464036 TGTGTTCGCTCACTCAGGTT 59.536 50.000 10.18 0.00 38.90 3.50
121 123 0.032678 CTGTGTTCGCTCACTCAGGT 59.967 55.000 10.18 0.00 38.90 4.00
122 124 1.287730 GCTGTGTTCGCTCACTCAGG 61.288 60.000 13.15 0.73 38.28 3.86
142 144 1.003223 GCGTGTTTTGCTAGTTCGGTT 60.003 47.619 0.00 0.00 0.00 4.44
150 152 0.310543 CAGCTTGGCGTGTTTTGCTA 59.689 50.000 0.00 0.00 0.00 3.49
167 169 3.313526 GGTGTGCTGTTCTATAATGCCAG 59.686 47.826 0.00 0.00 0.00 4.85
168 170 3.054434 AGGTGTGCTGTTCTATAATGCCA 60.054 43.478 0.00 0.00 0.00 4.92
181 200 2.756840 TCTCTCATCAAGGTGTGCTG 57.243 50.000 0.00 0.00 0.00 4.41
189 208 5.593968 CCTCTTCTCACATCTCTCATCAAG 58.406 45.833 0.00 0.00 0.00 3.02
295 315 6.014584 GTCCATTAAACATTCTGGGTTTTCCT 60.015 38.462 0.00 0.00 39.12 3.36
302 322 5.009631 TGTCTGTCCATTAAACATTCTGGG 58.990 41.667 0.00 0.00 0.00 4.45
303 323 6.573664 TTGTCTGTCCATTAAACATTCTGG 57.426 37.500 0.00 0.00 0.00 3.86
326 346 1.561542 AGATTGTTGAAGGGGATCGCT 59.438 47.619 9.90 0.00 0.00 4.93
331 351 2.445145 TGGAACAGATTGTTGAAGGGGA 59.555 45.455 0.00 0.00 41.28 4.81
335 355 9.740239 CCATAATATTGGAACAGATTGTTGAAG 57.260 33.333 0.00 0.00 41.28 3.02
344 364 4.431416 ACGCCCATAATATTGGAACAGA 57.569 40.909 0.00 0.00 42.39 3.41
354 421 4.768968 GGGTCTAGTAGAACGCCCATAATA 59.231 45.833 16.17 0.00 31.09 0.98
389 456 2.095853 CACACCTGAGTTGTGTTGTGTC 59.904 50.000 1.59 0.00 44.19 3.67
404 471 1.886585 CTACGCTCAGCTCACACCT 59.113 57.895 0.00 0.00 0.00 4.00
432 499 2.224354 GGTTCCACCGTAAGAAACCTCA 60.224 50.000 0.00 0.00 43.02 3.86
433 500 2.224354 TGGTTCCACCGTAAGAAACCTC 60.224 50.000 4.42 0.00 42.58 3.85
434 501 1.770061 TGGTTCCACCGTAAGAAACCT 59.230 47.619 4.42 0.00 42.58 3.50
435 502 2.259266 TGGTTCCACCGTAAGAAACC 57.741 50.000 0.00 0.00 42.58 3.27
436 503 2.291465 GGTTGGTTCCACCGTAAGAAAC 59.709 50.000 0.00 0.00 42.58 2.78
437 504 2.574450 GGTTGGTTCCACCGTAAGAAA 58.426 47.619 0.00 0.00 42.58 2.52
438 505 1.202794 GGGTTGGTTCCACCGTAAGAA 60.203 52.381 0.00 0.00 42.58 2.52
439 506 0.397564 GGGTTGGTTCCACCGTAAGA 59.602 55.000 0.00 0.00 42.58 2.10
440 507 0.108963 TGGGTTGGTTCCACCGTAAG 59.891 55.000 0.00 0.00 42.58 2.34
444 520 1.459450 CTAATGGGTTGGTTCCACCG 58.541 55.000 0.00 0.00 42.58 4.94
477 553 6.817765 AAATGTGACCATCAACGATAAGTT 57.182 33.333 0.00 0.00 45.45 2.66
482 558 4.156556 CAGGAAAATGTGACCATCAACGAT 59.843 41.667 0.00 0.00 0.00 3.73
483 559 3.501828 CAGGAAAATGTGACCATCAACGA 59.498 43.478 0.00 0.00 0.00 3.85
484 560 3.501828 TCAGGAAAATGTGACCATCAACG 59.498 43.478 0.00 0.00 0.00 4.10
485 561 5.452078 TTCAGGAAAATGTGACCATCAAC 57.548 39.130 0.00 0.00 0.00 3.18
523 599 0.371989 CAATAAATGCACGTCGCCGA 59.628 50.000 0.00 0.00 41.33 5.54
526 602 0.730265 TCCCAATAAATGCACGTCGC 59.270 50.000 0.00 3.44 42.89 5.19
530 606 2.614057 GTCTCCTCCCAATAAATGCACG 59.386 50.000 0.00 0.00 0.00 5.34
535 611 4.442472 CGGTTACGTCTCCTCCCAATAAAT 60.442 45.833 0.00 0.00 34.81 1.40
538 614 2.026641 CGGTTACGTCTCCTCCCAATA 58.973 52.381 0.00 0.00 34.81 1.90
540 616 2.269978 CGGTTACGTCTCCTCCCAA 58.730 57.895 0.00 0.00 34.81 4.12
552 628 4.479619 ACGTCTTCATAGTCAACGGTTAC 58.520 43.478 0.00 0.00 37.65 2.50
554 630 3.255149 AGACGTCTTCATAGTCAACGGTT 59.745 43.478 13.58 0.00 37.65 4.44
560 636 4.421033 GTCACAGACGTCTTCATAGTCA 57.579 45.455 17.26 0.00 37.36 3.41
592 668 1.293924 CCGGCACATCATCTTGAGAC 58.706 55.000 0.00 0.00 0.00 3.36
632 708 6.649557 GCACATATGTACACCCTACCTTTATC 59.350 42.308 8.32 0.00 0.00 1.75
653 729 1.206132 ACCCGATTCTATGAACGCACA 59.794 47.619 0.00 0.00 0.00 4.57
669 745 1.267832 GCATACACGCACATAAACCCG 60.268 52.381 0.00 0.00 0.00 5.28
671 747 1.661617 TCGCATACACGCACATAAACC 59.338 47.619 0.00 0.00 0.00 3.27
674 750 0.927537 GCTCGCATACACGCACATAA 59.072 50.000 0.00 0.00 0.00 1.90
757 835 2.233654 CCAGTGCTGTATCTCGCGC 61.234 63.158 0.00 0.00 36.93 6.86
758 836 2.233654 GCCAGTGCTGTATCTCGCG 61.234 63.158 0.00 0.00 33.53 5.87
761 839 0.390860 ATCCGCCAGTGCTGTATCTC 59.609 55.000 0.00 0.00 34.43 2.75
767 845 1.508088 GGAAAATCCGCCAGTGCTG 59.492 57.895 0.00 0.00 34.43 4.41
805 883 1.028868 GGCCCAAGCAAGCTCACTAG 61.029 60.000 0.00 0.00 42.56 2.57
806 884 1.002134 GGCCCAAGCAAGCTCACTA 60.002 57.895 0.00 0.00 42.56 2.74
807 885 2.282745 GGCCCAAGCAAGCTCACT 60.283 61.111 0.00 0.00 42.56 3.41
811 889 2.203480 TTTCGGCCCAAGCAAGCT 60.203 55.556 0.00 0.00 42.56 3.74
848 926 1.469079 GCAAAAACCGTCAGTGCAGTT 60.469 47.619 0.00 0.00 35.28 3.16
867 946 1.489230 TCTTCGAGGGGGAATTTAGGC 59.511 52.381 0.00 0.00 0.00 3.93
868 947 3.054655 TGTTCTTCGAGGGGGAATTTAGG 60.055 47.826 0.00 0.00 0.00 2.69
870 949 4.644163 TTGTTCTTCGAGGGGGAATTTA 57.356 40.909 0.00 0.00 0.00 1.40
871 950 3.518992 TTGTTCTTCGAGGGGGAATTT 57.481 42.857 0.00 0.00 0.00 1.82
874 953 1.544759 GCTTTGTTCTTCGAGGGGGAA 60.545 52.381 0.00 0.00 0.00 3.97
876 955 0.250727 TGCTTTGTTCTTCGAGGGGG 60.251 55.000 0.00 0.00 0.00 5.40
886 965 2.427095 ACAAGTTGGGACTGCTTTGTTC 59.573 45.455 7.96 0.00 35.91 3.18
889 968 4.610945 CTTTACAAGTTGGGACTGCTTTG 58.389 43.478 7.96 0.00 35.91 2.77
891 970 2.623416 GCTTTACAAGTTGGGACTGCTT 59.377 45.455 7.96 0.00 35.91 3.91
920 999 1.153568 GCCTGCAGTGTCTATCGCA 60.154 57.895 13.81 0.00 0.00 5.10
925 1004 2.262603 CGCTGCCTGCAGTGTCTA 59.737 61.111 21.41 0.00 46.14 2.59
1023 1116 1.566563 CATATCACTGGCGCGCTTC 59.433 57.895 32.29 16.28 0.00 3.86
1287 1616 2.568623 AAGTGGCACTGTAGGAAAGG 57.431 50.000 22.83 0.00 0.00 3.11
1299 1628 4.385825 AGAAAGACGTGATAAAAGTGGCA 58.614 39.130 0.00 0.00 0.00 4.92
1313 1648 0.304705 AGTTGCACGCAAGAAAGACG 59.695 50.000 4.35 0.00 43.62 4.18
1357 1709 3.181485 CCTAAGCCTAAGAACTGAGACCG 60.181 52.174 0.00 0.00 0.00 4.79
1365 1717 7.660617 ACAAAGTAAGAACCTAAGCCTAAGAAC 59.339 37.037 0.00 0.00 0.00 3.01
1397 1791 8.393366 CGGGCATCTTGATAATTCATATACTTG 58.607 37.037 0.00 0.00 0.00 3.16
1410 1814 1.211703 TCTTTGGCGGGCATCTTGATA 59.788 47.619 4.64 0.00 0.00 2.15
1445 1849 2.031157 AGCATGTTTCGCCAACTTGTAC 60.031 45.455 11.99 0.00 40.90 2.90
1574 1979 2.103094 TGCTGAGGATAACGGAATCTGG 59.897 50.000 0.00 0.00 0.00 3.86
1713 2120 0.179936 AGATAGTGCTTCCAGCCTGC 59.820 55.000 0.00 0.00 41.51 4.85
1740 2147 7.938715 AGCAGGATTAAATCTCATGAATGTTC 58.061 34.615 0.00 0.00 0.00 3.18
1764 2183 6.510157 GCACCAAATCTCGTTGTGTATGATAG 60.510 42.308 0.00 0.00 0.00 2.08
1777 2196 1.063616 CAGCATCAGCACCAAATCTCG 59.936 52.381 0.00 0.00 45.49 4.04
1823 2242 5.231702 TGATCAAGCCACATCTGCATATA 57.768 39.130 0.00 0.00 0.00 0.86
1945 2364 3.815809 TCCTGTGAGGTTTACACAAAGG 58.184 45.455 0.00 0.00 45.49 3.11
1969 2388 8.893219 TGATGCTTTCAGTATAATACAGAAGG 57.107 34.615 0.00 0.00 35.93 3.46
2222 2656 5.121811 ACTATGAAGGTTCAGTCATCATGC 58.878 41.667 0.00 0.00 41.08 4.06
2388 2823 4.026886 CCAGCGCAGTTAAAAACTTGAAAC 60.027 41.667 11.47 0.00 40.46 2.78
2418 2871 6.369059 AGGACTAAATGAAGCAAATCATCG 57.631 37.500 0.88 0.00 39.08 3.84
2654 3112 8.545472 TGGGCTTTACACTAGTTTCTGTTATAT 58.455 33.333 0.00 0.00 0.00 0.86
2655 3113 7.820872 GTGGGCTTTACACTAGTTTCTGTTATA 59.179 37.037 0.00 0.00 35.98 0.98
2656 3114 6.653740 GTGGGCTTTACACTAGTTTCTGTTAT 59.346 38.462 0.00 0.00 35.98 1.89
2657 3115 5.993441 GTGGGCTTTACACTAGTTTCTGTTA 59.007 40.000 0.00 0.00 35.98 2.41
2658 3116 4.820173 GTGGGCTTTACACTAGTTTCTGTT 59.180 41.667 0.00 0.00 35.98 3.16
2708 3166 2.031919 TGCAGCACCCACGTTAGG 59.968 61.111 0.00 0.00 0.00 2.69
2709 3167 0.037697 TAGTGCAGCACCCACGTTAG 60.038 55.000 22.41 0.00 38.22 2.34
2726 3697 9.810545 CCTCTTTATTCTAAAACTGACTCCTAG 57.189 37.037 0.00 0.00 0.00 3.02
2838 3809 2.028020 GTCTTGTGTAACTCCAGGGAGG 60.028 54.545 19.02 2.24 45.88 4.30
2929 3900 3.969899 TCTAGTGCAGTGATAATGAGCG 58.030 45.455 3.69 0.00 0.00 5.03
3012 3983 0.607217 CAGCTGGGCAGTCATTCACA 60.607 55.000 5.57 0.00 0.00 3.58
3029 4000 9.003658 ACAAAAAGGTACTCAAATATGACTCAG 57.996 33.333 0.00 0.00 38.49 3.35
3158 4131 7.379139 TCTTAGTAGGAATAAGAGGGGGAAAT 58.621 38.462 0.00 0.00 34.99 2.17
3162 4135 6.382925 TCTTCTTAGTAGGAATAAGAGGGGG 58.617 44.000 6.13 0.00 39.68 5.40
3163 4136 9.027202 GTATCTTCTTAGTAGGAATAAGAGGGG 57.973 40.741 6.13 0.00 39.68 4.79
3380 4355 7.040201 GCAATTCCTGGCATCTATTTTCTCATA 60.040 37.037 0.00 0.00 0.00 2.15
3468 5246 3.505790 ATGCCCAAGTTGCCCGTCA 62.506 57.895 0.00 0.00 0.00 4.35
3554 6308 1.538047 CCTTGCCACACTTGTAGCAT 58.462 50.000 3.26 0.00 41.86 3.79
3609 6377 8.680903 CCACTTTTCATAGAATCATTTGCTAGT 58.319 33.333 0.00 0.00 0.00 2.57
3621 6389 5.572885 GCCTCTTACCCCACTTTTCATAGAA 60.573 44.000 0.00 0.00 0.00 2.10
3622 6390 4.080526 GCCTCTTACCCCACTTTTCATAGA 60.081 45.833 0.00 0.00 0.00 1.98
3808 6610 8.636213 ACTGAGTTGATTGTTTTCATGAAAGAT 58.364 29.630 19.64 14.91 0.00 2.40
3828 6630 6.038271 GTGTGGACAGTTGAAAATTACTGAGT 59.962 38.462 12.05 0.00 43.45 3.41
3849 6652 1.002142 CACAGCAGTTCCATGTGTGTG 60.002 52.381 2.98 3.53 39.54 3.82
3850 6653 1.311859 CACAGCAGTTCCATGTGTGT 58.688 50.000 2.98 0.00 39.54 3.72
3910 6713 2.355108 GCACTGTCCTAGAAATGGCTCA 60.355 50.000 0.00 0.00 0.00 4.26
3965 6770 8.532977 AAACATTGCATTGTTTAATGTACTCC 57.467 30.769 28.99 0.00 45.48 3.85
4035 6841 0.400213 TTGGCACTAGAACACCTGGG 59.600 55.000 0.00 0.00 0.00 4.45
4159 6965 9.729023 CGTGATAATCATTAAAGGCATAACAAA 57.271 29.630 0.00 0.00 0.00 2.83
4163 6969 8.458573 AACCGTGATAATCATTAAAGGCATAA 57.541 30.769 0.00 0.00 0.00 1.90
4164 6970 8.458573 AAACCGTGATAATCATTAAAGGCATA 57.541 30.769 0.00 0.00 0.00 3.14
4184 6995 6.073385 GGAGAGTAAAAGTGGTAAAGAAACCG 60.073 42.308 0.00 0.00 42.91 4.44
4190 7001 6.994221 TCAGAGGAGAGTAAAAGTGGTAAAG 58.006 40.000 0.00 0.00 0.00 1.85
4196 7007 7.786030 TCCAATATCAGAGGAGAGTAAAAGTG 58.214 38.462 0.00 0.00 0.00 3.16
4198 7009 9.844257 AAATCCAATATCAGAGGAGAGTAAAAG 57.156 33.333 0.00 0.00 34.40 2.27
4301 7113 0.478942 TGGCTATACGCTCCTCTCCT 59.521 55.000 0.00 0.00 39.13 3.69
4516 7328 2.109774 CCCCTTAATTGGCTCATGCAA 58.890 47.619 0.00 0.00 41.91 4.08
4617 7429 8.542926 CATGTGATCCTCAAACCCTCATATATA 58.457 37.037 0.00 0.00 0.00 0.86
4673 7485 9.469807 GATCACACTGATTGTAAGTATCCTAAG 57.530 37.037 0.00 0.00 37.20 2.18
4674 7486 8.421784 GGATCACACTGATTGTAAGTATCCTAA 58.578 37.037 0.00 0.00 37.20 2.69
4842 7662 6.071108 AGCTAGCTGAATAGAGTTCAACAGAA 60.071 38.462 18.57 0.00 0.00 3.02
4850 7670 5.186797 ACTGACAAGCTAGCTGAATAGAGTT 59.813 40.000 20.16 0.00 0.00 3.01
4858 7678 2.949451 GCTACTGACAAGCTAGCTGA 57.051 50.000 20.16 1.81 37.01 4.26
4987 7807 3.084039 CCCAGCTAGCAGTGAATTGAAA 58.916 45.455 18.83 0.00 0.00 2.69
5031 7851 9.023962 AGATGGATGTGTAATGTTTGTTAATGT 57.976 29.630 0.00 0.00 0.00 2.71
5132 7953 2.213499 ACTTTGCTACACACACTCTGC 58.787 47.619 0.00 0.00 0.00 4.26
5272 8093 8.454106 ACATAAAATGTCAACAGTCTAGCATTC 58.546 33.333 0.00 0.00 39.92 2.67
5416 8238 8.653338 CAAAGATTGTGGCTTCAAAATTATCAG 58.347 33.333 0.64 0.00 28.94 2.90
5444 8266 6.284475 GCTGATAGTTTAATCTGCAGTGAG 57.716 41.667 14.67 0.00 45.21 3.51
5675 8925 1.196808 CACCACCACGTTATGCAAGAC 59.803 52.381 0.00 0.00 0.00 3.01
5788 9038 2.742774 GACACCGCTGATTTTTGCTTT 58.257 42.857 0.00 0.00 0.00 3.51
5832 9095 2.417516 CCGCCCACGAATCGATCT 59.582 61.111 10.55 0.00 43.93 2.75
5975 9264 4.502263 CTGCGTGCTAGCTGCTTA 57.498 55.556 25.64 11.48 43.37 3.09
5998 9295 2.047179 TCTCTGCTGCTGCTGCTG 60.047 61.111 27.67 26.32 40.48 4.41
6034 9331 0.037877 ATGCTGCTGTTGCTCCTCTT 59.962 50.000 0.00 0.00 40.48 2.85
6043 9340 2.356125 CCTACTAACCCATGCTGCTGTT 60.356 50.000 0.00 2.25 0.00 3.16
6054 9351 3.200165 AGAGCAAATCACCCTACTAACCC 59.800 47.826 0.00 0.00 0.00 4.11
6057 9354 5.395324 GCACTAGAGCAAATCACCCTACTAA 60.395 44.000 7.33 0.00 0.00 2.24
6086 9407 2.208431 CAGCTAGCTGATGTTGTAGCC 58.792 52.381 36.47 0.00 46.30 3.93
6128 9449 4.644685 TGAAGTGAGGGGAAAACAAAAGAG 59.355 41.667 0.00 0.00 0.00 2.85
6150 9471 0.875908 CGGTGCTATGGGACGTGATG 60.876 60.000 0.00 0.00 34.50 3.07
6167 9488 2.033194 GCAGGAAAACGAGGGTCGG 61.033 63.158 0.86 0.00 45.59 4.79
6404 9726 1.869767 GTTCAGCTCACCTCTTGTGTG 59.130 52.381 0.00 0.00 45.61 3.82
6457 9781 5.414454 GCAATGGAATGGTTACACTTCAGTA 59.586 40.000 0.08 0.00 0.00 2.74
6464 9788 3.932545 TGTGCAATGGAATGGTTACAC 57.067 42.857 0.00 0.00 0.00 2.90
6537 9861 1.879380 TCGTTCTGCACCAAAGGATTG 59.121 47.619 0.00 0.00 36.25 2.67
6538 9862 1.880027 GTCGTTCTGCACCAAAGGATT 59.120 47.619 0.00 0.00 0.00 3.01
6539 9863 1.202758 TGTCGTTCTGCACCAAAGGAT 60.203 47.619 0.00 0.00 0.00 3.24
6540 9864 0.179234 TGTCGTTCTGCACCAAAGGA 59.821 50.000 0.00 0.00 0.00 3.36
6541 9865 1.069022 CATGTCGTTCTGCACCAAAGG 60.069 52.381 0.00 0.00 0.00 3.11
6542 9866 1.872952 TCATGTCGTTCTGCACCAAAG 59.127 47.619 0.00 0.00 0.00 2.77
6543 9867 1.960417 TCATGTCGTTCTGCACCAAA 58.040 45.000 0.00 0.00 0.00 3.28
6544 9868 1.805943 CATCATGTCGTTCTGCACCAA 59.194 47.619 0.00 0.00 0.00 3.67
6545 9869 1.441738 CATCATGTCGTTCTGCACCA 58.558 50.000 0.00 0.00 0.00 4.17
6546 9870 0.097674 GCATCATGTCGTTCTGCACC 59.902 55.000 0.00 0.00 33.13 5.01
6547 9871 0.798159 TGCATCATGTCGTTCTGCAC 59.202 50.000 0.00 0.00 37.88 4.57
6548 9872 1.399089 CATGCATCATGTCGTTCTGCA 59.601 47.619 0.00 0.00 45.84 4.41
6549 9873 2.101053 CATGCATCATGTCGTTCTGC 57.899 50.000 0.00 0.00 37.12 4.26
6558 9882 7.603024 AGACATCAAGATACTACATGCATCATG 59.397 37.037 0.00 5.35 46.18 3.07
6559 9883 7.603024 CAGACATCAAGATACTACATGCATCAT 59.397 37.037 0.00 0.00 0.00 2.45
6560 9884 6.927381 CAGACATCAAGATACTACATGCATCA 59.073 38.462 0.00 0.00 0.00 3.07
6561 9885 6.368243 CCAGACATCAAGATACTACATGCATC 59.632 42.308 0.00 0.00 0.00 3.91
6562 9886 6.183361 ACCAGACATCAAGATACTACATGCAT 60.183 38.462 0.00 0.00 0.00 3.96
6563 9887 5.129320 ACCAGACATCAAGATACTACATGCA 59.871 40.000 0.00 0.00 0.00 3.96
6564 9888 5.464722 CACCAGACATCAAGATACTACATGC 59.535 44.000 0.00 0.00 0.00 4.06
6566 9890 6.836007 TCTCACCAGACATCAAGATACTACAT 59.164 38.462 0.00 0.00 0.00 2.29
6567 9891 6.187682 TCTCACCAGACATCAAGATACTACA 58.812 40.000 0.00 0.00 0.00 2.74
6568 9892 6.701145 TCTCACCAGACATCAAGATACTAC 57.299 41.667 0.00 0.00 0.00 2.73
6583 9907 2.224378 ACATGACCACAAGTCTCACCAG 60.224 50.000 0.00 0.00 46.46 4.00
6584 9908 1.768275 ACATGACCACAAGTCTCACCA 59.232 47.619 0.00 0.00 46.46 4.17
6585 9909 2.549754 CAACATGACCACAAGTCTCACC 59.450 50.000 0.00 0.00 46.46 4.02
6587 9911 3.558931 ACAACATGACCACAAGTCTCA 57.441 42.857 0.00 0.00 46.46 3.27
6588 9912 4.449068 CAGTACAACATGACCACAAGTCTC 59.551 45.833 0.00 0.00 46.46 3.36
6589 9913 4.380531 CAGTACAACATGACCACAAGTCT 58.619 43.478 0.00 0.00 46.46 3.24
6590 9914 3.058914 GCAGTACAACATGACCACAAGTC 60.059 47.826 0.00 0.00 46.51 3.01
6595 9919 1.165270 GGGCAGTACAACATGACCAC 58.835 55.000 0.00 0.00 44.69 4.16
6597 9921 1.812571 CTTGGGCAGTACAACATGACC 59.187 52.381 0.00 0.00 45.61 4.02
6598 9922 1.200020 GCTTGGGCAGTACAACATGAC 59.800 52.381 0.00 0.00 38.54 3.06
6599 9923 1.202867 TGCTTGGGCAGTACAACATGA 60.203 47.619 0.00 0.00 44.28 3.07
6600 9924 1.246649 TGCTTGGGCAGTACAACATG 58.753 50.000 0.00 0.00 44.28 3.21
6601 9925 3.743714 TGCTTGGGCAGTACAACAT 57.256 47.368 0.00 0.00 44.28 2.71
6611 9935 1.322538 ATGGTCCGAAATGCTTGGGC 61.323 55.000 0.00 0.00 39.26 5.36
6612 9936 1.135024 CAATGGTCCGAAATGCTTGGG 60.135 52.381 0.00 0.00 0.00 4.12
6613 9937 1.135024 CCAATGGTCCGAAATGCTTGG 60.135 52.381 0.00 0.00 0.00 3.61
6614 9938 1.545582 ACCAATGGTCCGAAATGCTTG 59.454 47.619 0.00 0.00 0.00 4.01
6615 9939 1.923356 ACCAATGGTCCGAAATGCTT 58.077 45.000 0.00 0.00 0.00 3.91
6616 9940 1.923356 AACCAATGGTCCGAAATGCT 58.077 45.000 4.95 0.00 33.12 3.79
6619 9943 3.801983 GCAACAAACCAATGGTCCGAAAT 60.802 43.478 4.95 0.00 33.12 2.17
6620 9944 2.482142 GCAACAAACCAATGGTCCGAAA 60.482 45.455 4.95 0.00 33.12 3.46
6622 9946 0.671251 GCAACAAACCAATGGTCCGA 59.329 50.000 4.95 0.00 33.12 4.55
6623 9947 0.387202 TGCAACAAACCAATGGTCCG 59.613 50.000 4.95 2.04 33.12 4.79
6624 9948 1.864565 GTGCAACAAACCAATGGTCC 58.135 50.000 4.95 0.00 32.42 4.46
6637 9961 6.435430 TGTGGATATATTTCAGTGTGCAAC 57.565 37.500 0.00 0.00 37.35 4.17
6638 9962 7.041167 GCTATGTGGATATATTTCAGTGTGCAA 60.041 37.037 0.00 0.00 0.00 4.08
6641 9965 8.613060 AAGCTATGTGGATATATTTCAGTGTG 57.387 34.615 0.00 0.00 0.00 3.82
6642 9966 8.432013 TGAAGCTATGTGGATATATTTCAGTGT 58.568 33.333 0.00 0.00 0.00 3.55
6643 9967 8.837788 TGAAGCTATGTGGATATATTTCAGTG 57.162 34.615 0.00 0.00 0.00 3.66
6644 9968 8.099537 CCTGAAGCTATGTGGATATATTTCAGT 58.900 37.037 13.19 1.44 35.30 3.41
6646 9970 7.977818 ACCTGAAGCTATGTGGATATATTTCA 58.022 34.615 0.00 0.00 0.00 2.69
6647 9971 8.725148 CAACCTGAAGCTATGTGGATATATTTC 58.275 37.037 0.00 0.00 0.00 2.17
6648 9972 8.220559 ACAACCTGAAGCTATGTGGATATATTT 58.779 33.333 0.00 0.00 0.00 1.40
6650 9974 7.321717 ACAACCTGAAGCTATGTGGATATAT 57.678 36.000 0.00 0.00 0.00 0.86
6652 9976 5.636903 ACAACCTGAAGCTATGTGGATAT 57.363 39.130 0.00 0.00 0.00 1.63
6653 9977 5.435686 AACAACCTGAAGCTATGTGGATA 57.564 39.130 0.00 0.00 0.00 2.59
6654 9978 4.307032 AACAACCTGAAGCTATGTGGAT 57.693 40.909 0.00 0.00 0.00 3.41
6655 9979 3.788227 AACAACCTGAAGCTATGTGGA 57.212 42.857 0.00 0.00 0.00 4.02
6656 9980 4.278170 TGAAAACAACCTGAAGCTATGTGG 59.722 41.667 0.00 0.00 0.00 4.17
6793 10234 6.327154 TGAGCACACATCAATCAAATCAATC 58.673 36.000 0.00 0.00 0.00 2.67
6806 10247 6.968904 CCAAAACTATGTTATGAGCACACATC 59.031 38.462 1.53 0.00 0.00 3.06
6855 10299 5.883673 TGCACTAACTAATATGGTGGGTTTC 59.116 40.000 0.00 0.00 0.00 2.78
6935 10383 5.717178 AGGAACTATAGTGACACACATCAGT 59.283 40.000 6.06 0.87 36.02 3.41
7187 10675 6.210796 CAGAAATGATGAAGCAAACAAGTGA 58.789 36.000 0.00 0.00 0.00 3.41
7264 10777 9.141400 GATAGTAGGAAGTTCTGTGTTAGTTTG 57.859 37.037 2.25 0.00 0.00 2.93
7270 10783 7.726033 AGATGATAGTAGGAAGTTCTGTGTT 57.274 36.000 2.25 0.00 0.00 3.32
7296 10809 4.053295 CAAACAGCTTTTGATTGGACAGG 58.947 43.478 13.03 0.00 36.30 4.00
7439 10958 6.126739 GGAGGATGAGGTTGTTAACTCCTATT 60.127 42.308 18.06 11.24 40.00 1.73
7523 11042 2.176045 TCTTCATCGAGGTTGCCTGTA 58.824 47.619 0.00 0.00 31.76 2.74
7710 11229 2.376518 TGAATCTTCCCCTTCACTGCTT 59.623 45.455 0.00 0.00 0.00 3.91
7770 11289 9.243637 GATTGCATTACTTCACAACAAAACTAA 57.756 29.630 0.00 0.00 0.00 2.24
7796 11316 1.948834 TGGTGCTGAACATTGTGACAG 59.051 47.619 15.43 15.43 0.00 3.51
7867 11388 2.335712 GGCAAGCGGAGAAACCCTG 61.336 63.158 0.00 0.00 34.64 4.45
7890 11411 1.118838 CAAAGAGCCCACCACCAAAA 58.881 50.000 0.00 0.00 0.00 2.44
7918 11439 4.935352 AAACAAGAAACAGCAGCCAATA 57.065 36.364 0.00 0.00 0.00 1.90
7946 11471 3.526534 GAGAAAGGGGATGAGAAGAACG 58.473 50.000 0.00 0.00 0.00 3.95
7956 11481 3.135530 CGAAATCTCAGGAGAAAGGGGAT 59.864 47.826 2.68 0.00 41.36 3.85
7989 11514 5.757850 AGTTTCTTAAAGACCTTGCACAG 57.242 39.130 0.00 0.00 0.00 3.66
8005 11530 7.850935 TCGATTCCCCTATATGTAAGTTTCT 57.149 36.000 0.00 0.00 0.00 2.52
8016 11542 5.875224 TGATGCAAAATCGATTCCCCTATA 58.125 37.500 11.83 0.00 0.00 1.31
8026 11554 2.356695 CCTGCTGATGATGCAAAATCGA 59.643 45.455 0.00 0.00 40.13 3.59
8070 11598 2.750166 CGGTTTGTACATATTGGTGCCA 59.250 45.455 0.00 0.00 0.00 4.92
8081 11609 0.393448 TGCTGCCTACGGTTTGTACA 59.607 50.000 0.00 0.00 0.00 2.90
8218 11774 5.391736 GTGAAATTCACAGCTTCAGGAGATG 60.392 44.000 20.08 0.00 46.22 2.90
8262 11820 8.547173 AGTCTCATATTCAAGAGATCCAAAACT 58.453 33.333 0.00 0.00 42.34 2.66
8321 12165 1.739466 ACTCTGTGCACGGCATTTATG 59.261 47.619 21.33 6.96 41.91 1.90
8325 12169 1.672356 GGACTCTGTGCACGGCATT 60.672 57.895 21.33 7.00 41.91 3.56
8327 12171 4.662961 CGGACTCTGTGCACGGCA 62.663 66.667 21.33 9.02 35.60 5.69
8352 12196 3.170717 ACCTCAAGTTATCGGTGGAAGA 58.829 45.455 0.00 0.00 0.00 2.87
8363 12207 3.379372 CCTCCGATAACGACCTCAAGTTA 59.621 47.826 0.00 0.00 42.66 2.24
8401 12245 4.781087 AGTCACCCCTATTTTGCTAGTGTA 59.219 41.667 0.00 0.00 0.00 2.90
8415 12259 1.853963 CTGTGCTACTAGTCACCCCT 58.146 55.000 11.13 0.00 32.51 4.79
8468 12317 1.542030 ACACAAAGTCGCAAACCACAA 59.458 42.857 0.00 0.00 0.00 3.33
8508 12358 8.524870 AAGATGACAAAGCACAAATATGTTTC 57.475 30.769 0.00 0.00 37.82 2.78
8519 12369 6.787085 AGTAACTGTAAGATGACAAAGCAC 57.213 37.500 0.00 0.00 37.43 4.40
8544 12394 4.884164 AGTAAGCATGGTCTCAAAATAGGC 59.116 41.667 0.00 0.00 0.00 3.93
8591 12441 3.194968 GGAGAGAATCGTAAACCTGGACA 59.805 47.826 0.00 0.00 42.67 4.02
8603 12453 4.092675 GCTCAAAACTGAAGGAGAGAATCG 59.907 45.833 0.00 0.00 42.67 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.