Multiple sequence alignment - TraesCS5A01G015100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G015100 chr5A 100.000 6609 0 0 1 6609 10540119 10546727 0.000000e+00 12168.0
1 TraesCS5A01G015100 chr5A 84.074 1080 138 19 4623 5678 10554339 10555408 0.000000e+00 1022.0
2 TraesCS5A01G015100 chr5A 96.675 391 11 1 6221 6609 10551898 10552288 0.000000e+00 649.0
3 TraesCS5A01G015100 chr5A 92.941 85 6 0 4386 4470 10554061 10554145 2.500000e-24 124.0
4 TraesCS5A01G015100 chr5B 91.137 3667 204 33 45 3684 13185733 13189305 0.000000e+00 4859.0
5 TraesCS5A01G015100 chr5B 95.556 1170 45 6 3682 4846 13189354 13190521 0.000000e+00 1866.0
6 TraesCS5A01G015100 chr5B 91.034 1093 79 12 4884 5967 13190517 13191599 0.000000e+00 1458.0
7 TraesCS5A01G015100 chr5B 83.370 908 109 18 4924 5798 13194871 13195769 0.000000e+00 802.0
8 TraesCS5A01G015100 chr5B 83.764 542 65 18 3998 4527 13192800 13193330 5.950000e-135 492.0
9 TraesCS5A01G015100 chr5B 82.398 392 50 12 5290 5678 13203267 13203642 2.300000e-84 324.0
10 TraesCS5A01G015100 chr5B 86.344 227 27 4 5438 5661 12647849 12648074 1.840000e-60 244.0
11 TraesCS5A01G015100 chr5B 86.713 143 18 1 4727 4869 13194667 13194808 2.470000e-34 158.0
12 TraesCS5A01G015100 chr5B 85.897 78 7 3 5605 5678 12647235 12647312 5.490000e-11 80.5
13 TraesCS5A01G015100 chr5D 93.517 2869 126 25 834 3684 13726908 13729734 0.000000e+00 4213.0
14 TraesCS5A01G015100 chr5D 95.381 1169 49 4 3682 4846 13729783 13730950 0.000000e+00 1855.0
15 TraesCS5A01G015100 chr5D 90.692 1343 104 16 4884 6220 13730946 13732273 0.000000e+00 1768.0
16 TraesCS5A01G015100 chr5D 88.462 858 62 8 1 849 13726059 13726888 0.000000e+00 1002.0
17 TraesCS5A01G015100 chr5D 85.828 501 58 9 3998 4489 13733384 13733880 2.730000e-143 520.0
18 TraesCS5A01G015100 chr5D 84.942 518 73 3 3168 3684 13785063 13785576 2.730000e-143 520.0
19 TraesCS5A01G015100 chr5D 86.287 474 53 5 5109 5575 13737234 13737702 7.650000e-139 505.0
20 TraesCS5A01G015100 chr5D 81.466 491 79 8 4623 5103 13734462 13734950 2.220000e-109 407.0
21 TraesCS5A01G015100 chr5D 84.000 400 42 18 6221 6608 35851038 35851427 1.350000e-96 364.0
22 TraesCS5A01G015100 chr5D 85.714 231 28 5 5438 5664 12161083 12160854 8.570000e-59 239.0
23 TraesCS5A01G015100 chr3B 88.101 395 36 8 6221 6609 8868896 8869285 6.040000e-125 459.0
24 TraesCS5A01G015100 chr3B 87.909 397 36 8 6220 6609 8863379 8863770 2.170000e-124 457.0
25 TraesCS5A01G015100 chr1B 88.101 395 36 8 6221 6609 189691626 189691237 6.040000e-125 459.0
26 TraesCS5A01G015100 chr1B 87.626 396 36 10 6221 6609 135824872 135825261 1.310000e-121 448.0
27 TraesCS5A01G015100 chr1B 87.563 394 36 10 6221 6607 135819575 135819962 1.690000e-120 444.0
28 TraesCS5A01G015100 chr1B 86.318 402 40 7 6221 6609 189697159 189696760 2.200000e-114 424.0
29 TraesCS5A01G015100 chr7A 83.603 494 65 10 3196 3684 699474524 699474042 3.630000e-122 449.0
30 TraesCS5A01G015100 chr7A 84.833 389 46 11 3682 4058 699473992 699473605 4.840000e-101 379.0
31 TraesCS5A01G015100 chr7A 78.017 232 41 9 536 767 135001218 135001439 3.210000e-28 137.0
32 TraesCS5A01G015100 chr7A 77.604 192 32 7 637 822 619872843 619872657 9.060000e-19 106.0
33 TraesCS5A01G015100 chr3A 86.582 395 45 6 6221 6609 737282596 737282204 4.740000e-116 429.0
34 TraesCS5A01G015100 chr3A 86.582 395 45 6 6221 6609 737288131 737287739 4.740000e-116 429.0
35 TraesCS5A01G015100 chr3A 79.098 244 29 12 554 785 453672155 453671922 1.480000e-31 148.0
36 TraesCS5A01G015100 chr1D 86.933 375 37 7 3682 4045 383311181 383310808 1.720000e-110 411.0
37 TraesCS5A01G015100 chr1D 84.777 381 53 4 3682 4058 323874434 323874055 1.740000e-100 377.0
38 TraesCS5A01G015100 chr1D 82.642 265 35 6 3424 3684 323874741 323874484 2.400000e-54 224.0
39 TraesCS5A01G015100 chr7B 85.640 383 47 7 3682 4058 203140789 203141169 4.800000e-106 396.0
40 TraesCS5A01G015100 chr4A 85.028 354 44 8 3682 4030 718490212 718489863 1.050000e-92 351.0
41 TraesCS5A01G015100 chr4A 79.094 287 34 8 545 819 60740553 60740281 2.450000e-39 174.0
42 TraesCS5A01G015100 chr6B 81.227 277 35 9 538 812 686810335 686810596 2.420000e-49 207.0
43 TraesCS5A01G015100 chr7D 79.861 288 48 9 538 821 135974342 135974623 1.120000e-47 202.0
44 TraesCS5A01G015100 chr7D 88.430 121 9 2 3424 3544 109324863 109324978 2.480000e-29 141.0
45 TraesCS5A01G015100 chr7D 79.327 208 33 5 622 822 538375599 538375803 3.210000e-28 137.0
46 TraesCS5A01G015100 chr3D 78.279 244 43 5 538 781 147336812 147336579 1.480000e-31 148.0
47 TraesCS5A01G015100 chr3D 77.350 234 42 7 538 771 149204334 149204556 1.930000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G015100 chr5A 10540119 10546727 6608 False 12168.000000 12168 100.000000 1 6609 1 chr5A.!!$F1 6608
1 TraesCS5A01G015100 chr5A 10551898 10555408 3510 False 598.333333 1022 91.230000 4386 6609 3 chr5A.!!$F2 2223
2 TraesCS5A01G015100 chr5B 13185733 13195769 10036 False 1605.833333 4859 88.595667 45 5967 6 chr5B.!!$F3 5922
3 TraesCS5A01G015100 chr5D 13726059 13737702 11643 False 1467.142857 4213 88.804714 1 6220 7 chr5D.!!$F3 6219
4 TraesCS5A01G015100 chr5D 13785063 13785576 513 False 520.000000 520 84.942000 3168 3684 1 chr5D.!!$F1 516
5 TraesCS5A01G015100 chr7A 699473605 699474524 919 True 414.000000 449 84.218000 3196 4058 2 chr7A.!!$R2 862
6 TraesCS5A01G015100 chr1D 323874055 323874741 686 True 300.500000 377 83.709500 3424 4058 2 chr1D.!!$R2 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 622 0.035343 AGCTTTTCTACCCGAAGCCC 60.035 55.000 3.91 0.0 45.18 5.19 F
2314 2393 0.036105 TGGCGACTGATGCTGTGATT 60.036 50.000 0.00 0.0 0.00 2.57 F
3099 3183 0.106268 TTTCTTGCCTCACTTGCCCA 60.106 50.000 0.00 0.0 0.00 5.36 F
4483 4692 1.071385 CCATCTCTCCACCAGGTATGC 59.929 57.143 0.00 0.0 35.89 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2432 0.692476 ACTAATCCAGCAGGCACACA 59.308 50.0 0.00 0.00 33.74 3.72 R
3414 3503 1.109323 AGGCACAAGGTCCTGCAAAC 61.109 55.0 4.16 0.00 34.90 2.93 R
4980 5221 1.198713 ATGGTCAGTAGCTGGACCTG 58.801 55.0 25.13 13.95 34.85 4.00 R
6383 6650 0.035458 ACCCCTCGCTCTCAGTTTTG 59.965 55.0 0.00 0.00 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 135 6.790232 TGGGTATGAAATTTCCCATTTCTC 57.210 37.500 15.48 2.75 41.83 2.87
381 388 8.877864 TTCATTATACTGGTCATTGTTTTCCT 57.122 30.769 0.00 0.00 0.00 3.36
448 455 2.755836 AATGTTGCTTCACACGTCAC 57.244 45.000 0.00 0.00 0.00 3.67
469 476 6.374333 GTCACTGCAAATACCTTAATCTCCAA 59.626 38.462 0.00 0.00 0.00 3.53
470 477 6.945435 TCACTGCAAATACCTTAATCTCCAAA 59.055 34.615 0.00 0.00 0.00 3.28
538 545 2.666098 GGGCTCGCACTTCCCCTTA 61.666 63.158 0.00 0.00 34.59 2.69
579 586 0.036010 ACCCGAAAGCCAGACATCTG 60.036 55.000 1.63 1.63 43.40 2.90
593 600 1.684734 ATCTGGGCGTAGTTCGGGT 60.685 57.895 0.00 0.00 40.26 5.28
595 602 1.447314 CTGGGCGTAGTTCGGGTTC 60.447 63.158 0.00 0.00 40.26 3.62
604 611 2.640316 AGTTCGGGTTCAGCTTTTCT 57.360 45.000 0.00 0.00 0.00 2.52
615 622 0.035343 AGCTTTTCTACCCGAAGCCC 60.035 55.000 3.91 0.00 45.18 5.19
627 634 1.378646 GAAGCCCGGCCTAAAAGCT 60.379 57.895 5.55 0.00 34.64 3.74
785 804 5.220567 GCTTGAGATTTTGAGATCGGTCTTC 60.221 44.000 0.00 0.00 33.97 2.87
786 805 4.424626 TGAGATTTTGAGATCGGTCTTCG 58.575 43.478 0.00 0.00 33.97 3.79
855 909 4.929819 AAGCAAAAGGGACACGTATTTT 57.070 36.364 0.00 0.00 0.00 1.82
990 1046 2.337246 CGGCTAAACCCAAACCCCG 61.337 63.158 0.00 0.00 33.26 5.73
992 1048 2.985117 GCTAAACCCAAACCCCGCG 61.985 63.158 0.00 0.00 0.00 6.46
1443 1502 4.456911 TGCATTCTGAAATTCTGTGAGGAC 59.543 41.667 0.00 0.00 0.00 3.85
1472 1531 3.944015 ACTGAAGAACTGATGCTTATGCC 59.056 43.478 0.00 0.00 38.71 4.40
1529 1588 4.828925 GAGCTGGAGAGGCACGGC 62.829 72.222 0.00 0.00 39.25 5.68
1681 1748 0.039074 CCGAGGTGACAGACAGACAC 60.039 60.000 0.00 0.00 41.29 3.67
1827 1905 1.158484 TCGTCATAGACTCGCCTCCG 61.158 60.000 0.00 0.00 0.00 4.63
1920 1998 0.455005 GGAGCAAGCTTCTTGGCATC 59.545 55.000 8.96 4.11 34.17 3.91
1971 2049 6.439375 TGGTGTGAGTACTAAATACATCACCT 59.561 38.462 20.71 0.00 43.51 4.00
1996 2074 4.690748 TCTTAGTGATGTTACTGTTGCAGC 59.309 41.667 0.00 0.00 34.37 5.25
2016 2094 2.670789 GCCATTTGCGAACAATGCAGTA 60.671 45.455 0.00 0.00 44.28 2.74
2026 2104 6.147985 TGCGAACAATGCAGTATGTAAAGTTA 59.852 34.615 3.35 0.00 39.31 2.24
2083 2162 4.717629 TGTCGCCAGCGTCGAAGG 62.718 66.667 12.32 0.00 40.74 3.46
2126 2205 2.508526 TGAAAGCTTGCTTCCCTCTTC 58.491 47.619 5.89 2.39 0.00 2.87
2159 2238 6.481313 CACTTCTCTTCTGTCTTCACAATGAA 59.519 38.462 0.00 0.00 34.79 2.57
2172 2251 8.514594 GTCTTCACAATGAACATATGGAGAAAA 58.485 33.333 7.80 0.00 32.21 2.29
2189 2268 5.863935 GGAGAAAACTGTATTGCATTTGACC 59.136 40.000 0.00 0.00 0.00 4.02
2213 2292 6.294731 CCATCTACACATGTCGGATGAGAATA 60.295 42.308 22.95 0.00 38.98 1.75
2214 2293 6.709018 TCTACACATGTCGGATGAGAATAA 57.291 37.500 0.00 0.00 0.00 1.40
2215 2294 6.504398 TCTACACATGTCGGATGAGAATAAC 58.496 40.000 0.00 0.00 0.00 1.89
2216 2295 5.344743 ACACATGTCGGATGAGAATAACT 57.655 39.130 0.00 0.00 0.00 2.24
2217 2296 5.734720 ACACATGTCGGATGAGAATAACTT 58.265 37.500 0.00 0.00 0.00 2.66
2218 2297 5.812642 ACACATGTCGGATGAGAATAACTTC 59.187 40.000 0.00 0.00 0.00 3.01
2219 2298 6.045318 CACATGTCGGATGAGAATAACTTCT 58.955 40.000 0.00 0.00 44.53 2.85
2220 2299 6.536582 CACATGTCGGATGAGAATAACTTCTT 59.463 38.462 0.00 0.00 41.87 2.52
2221 2300 6.536582 ACATGTCGGATGAGAATAACTTCTTG 59.463 38.462 0.00 0.00 41.87 3.02
2222 2301 6.280855 TGTCGGATGAGAATAACTTCTTGA 57.719 37.500 0.00 0.00 41.87 3.02
2223 2302 6.333416 TGTCGGATGAGAATAACTTCTTGAG 58.667 40.000 0.00 0.00 41.87 3.02
2224 2303 6.071334 TGTCGGATGAGAATAACTTCTTGAGT 60.071 38.462 0.00 0.00 41.87 3.41
2226 2305 7.009723 GTCGGATGAGAATAACTTCTTGAGTTC 59.990 40.741 0.00 0.00 45.40 3.01
2227 2306 7.038659 CGGATGAGAATAACTTCTTGAGTTCT 58.961 38.462 0.00 0.00 45.40 3.01
2228 2307 7.547370 CGGATGAGAATAACTTCTTGAGTTCTT 59.453 37.037 0.00 0.00 45.40 2.52
2229 2308 8.663911 GGATGAGAATAACTTCTTGAGTTCTTG 58.336 37.037 0.00 0.00 45.40 3.02
2230 2309 9.213799 GATGAGAATAACTTCTTGAGTTCTTGT 57.786 33.333 0.00 0.00 45.40 3.16
2231 2310 8.370493 TGAGAATAACTTCTTGAGTTCTTGTG 57.630 34.615 0.00 0.00 45.40 3.33
2232 2311 7.987458 TGAGAATAACTTCTTGAGTTCTTGTGT 59.013 33.333 0.00 0.00 45.40 3.72
2263 2342 0.601046 TTCTTGTGCTGACCGCTCTG 60.601 55.000 0.00 0.00 40.11 3.35
2314 2393 0.036105 TGGCGACTGATGCTGTGATT 60.036 50.000 0.00 0.00 0.00 2.57
2337 2416 4.969999 TGGTACTATGGTAAGGGTGCATTA 59.030 41.667 0.00 0.00 0.00 1.90
2348 2427 4.862641 AGGGTGCATTACTTAATCCACT 57.137 40.909 3.62 0.00 35.29 4.00
2380 2459 3.411446 CCTGCTGGATTAGTGTTTGACA 58.589 45.455 2.92 0.00 34.57 3.58
2392 2471 1.606668 TGTTTGACAATTGCGTCTCCC 59.393 47.619 5.05 0.00 36.82 4.30
2393 2472 1.068541 GTTTGACAATTGCGTCTCCCC 60.069 52.381 5.05 0.00 36.82 4.81
2528 2607 8.310382 CCATGTTATTCTGTTCCACCATAAAAA 58.690 33.333 0.00 0.00 0.00 1.94
2529 2608 9.874205 CATGTTATTCTGTTCCACCATAAAAAT 57.126 29.630 0.00 0.00 0.00 1.82
2575 2654 9.794719 AAAAACCTATAGGATAATGTAGCCTTC 57.205 33.333 26.01 0.00 43.21 3.46
2586 2665 7.715249 GGATAATGTAGCCTTCATTGTTCTACA 59.285 37.037 6.80 0.00 42.28 2.74
2599 2678 8.902540 TCATTGTTCTACATACACTTGAAACT 57.097 30.769 0.00 0.00 0.00 2.66
2604 2683 9.990360 TGTTCTACATACACTTGAAACTGAATA 57.010 29.630 0.00 0.00 0.00 1.75
2619 2698 3.445096 ACTGAATAAAGGATTGCTGGTGC 59.555 43.478 0.00 0.00 40.20 5.01
2621 2700 3.696051 TGAATAAAGGATTGCTGGTGCTC 59.304 43.478 0.00 0.00 40.48 4.26
2629 2708 0.622136 TTGCTGGTGCTCATCTCCAT 59.378 50.000 0.00 0.00 37.67 3.41
2641 2720 4.785301 CTCATCTCCATTGGCTAGGAAAA 58.215 43.478 0.00 0.00 32.57 2.29
2642 2721 4.526970 TCATCTCCATTGGCTAGGAAAAC 58.473 43.478 0.00 0.00 32.57 2.43
2644 2723 4.380843 TCTCCATTGGCTAGGAAAACAA 57.619 40.909 0.00 0.00 32.57 2.83
2645 2724 4.335416 TCTCCATTGGCTAGGAAAACAAG 58.665 43.478 0.00 0.00 32.57 3.16
2647 2726 5.013704 TCTCCATTGGCTAGGAAAACAAGTA 59.986 40.000 0.00 0.00 32.57 2.24
2677 2756 3.244596 GCCTTAGAGTCAGTTTCAAGGGT 60.245 47.826 0.00 0.00 34.41 4.34
2689 2768 2.566833 TCAAGGGTTGATGTCACAGG 57.433 50.000 0.00 0.00 34.08 4.00
2760 2839 8.084590 AGTTCTTTATTTAGTTGGTGTCTTCG 57.915 34.615 0.00 0.00 0.00 3.79
2770 2849 4.945543 AGTTGGTGTCTTCGTTTACCTTTT 59.054 37.500 0.00 0.00 34.32 2.27
2771 2850 5.416639 AGTTGGTGTCTTCGTTTACCTTTTT 59.583 36.000 0.00 0.00 34.32 1.94
2801 2880 9.586435 TTCTCTTTTTCAGAAAACCTTTCATTC 57.414 29.630 7.89 0.00 31.72 2.67
2843 2925 0.180406 ATGTCGAAGGTGGTATGGGC 59.820 55.000 0.00 0.00 0.00 5.36
2876 2958 3.002451 CAGCTATAAGCAAAGCAGCTCTG 59.998 47.826 0.00 0.00 45.89 3.35
2945 3027 0.746063 TGTGCAAGCCCTCTTTGTTG 59.254 50.000 0.00 0.00 0.00 3.33
2974 3056 5.414144 TCGATCATGTTTGGCTGAACAAATA 59.586 36.000 10.22 0.00 42.29 1.40
2999 3081 8.822652 AATTAAAATCAAAGCAGACCAGAAAG 57.177 30.769 0.00 0.00 0.00 2.62
3004 3086 5.248870 TCAAAGCAGACCAGAAAGAAAAC 57.751 39.130 0.00 0.00 0.00 2.43
3005 3087 4.949856 TCAAAGCAGACCAGAAAGAAAACT 59.050 37.500 0.00 0.00 0.00 2.66
3006 3088 4.907879 AAGCAGACCAGAAAGAAAACTG 57.092 40.909 0.00 0.00 0.00 3.16
3032 3116 9.704098 GGATTTTACATCGAAGAAGTCATTAAC 57.296 33.333 0.00 0.00 43.58 2.01
3041 3125 9.737427 ATCGAAGAAGTCATTAACTATGTAGTG 57.263 33.333 0.00 0.00 43.58 2.74
3048 3132 9.899661 AAGTCATTAACTATGTAGTGGCATAAA 57.100 29.630 0.00 0.00 37.17 1.40
3062 3146 9.722056 GTAGTGGCATAAATTTAATTGTGAGAG 57.278 33.333 1.21 0.00 0.00 3.20
3099 3183 0.106268 TTTCTTGCCTCACTTGCCCA 60.106 50.000 0.00 0.00 0.00 5.36
3120 3208 5.355596 CCAAGTGTTTTTGCATAGGTTTCA 58.644 37.500 0.00 0.00 0.00 2.69
3140 3228 5.856126 TCACAAGTAATGGTCGATGAAAC 57.144 39.130 0.00 0.00 0.00 2.78
3190 3278 4.191544 TGGACTAATCAGCAAGTGTATGC 58.808 43.478 0.00 0.00 46.78 3.14
3214 3302 5.452777 GCACTGTGTAGTTCATTTCTTTCC 58.547 41.667 9.86 0.00 34.07 3.13
3219 3307 6.833041 TGTGTAGTTCATTTCTTTCCACCTA 58.167 36.000 0.00 0.00 0.00 3.08
3301 3389 2.227626 TGTGTTATCAAATGCCACACCG 59.772 45.455 0.00 0.00 37.53 4.94
3340 3429 9.988815 GTGGTAAGAATCACTCTGAATATGTAT 57.011 33.333 0.00 0.00 33.37 2.29
3365 3454 8.718102 TTGGTGTGAAGATTTATTAGCTCTAC 57.282 34.615 0.00 0.00 0.00 2.59
3366 3455 7.272978 TGGTGTGAAGATTTATTAGCTCTACC 58.727 38.462 0.00 0.00 0.00 3.18
3414 3503 5.534654 TCCTCTAAATTGACACCTGGTTTTG 59.465 40.000 0.00 0.00 0.00 2.44
3545 3635 1.196808 GAACTACATTGGTGGTGTGCG 59.803 52.381 0.00 0.00 38.87 5.34
3561 3651 5.121611 TGGTGTGCGTTCTTACAAATATCTG 59.878 40.000 0.00 0.00 0.00 2.90
3566 3656 7.274904 TGTGCGTTCTTACAAATATCTGTCTAC 59.725 37.037 0.00 0.00 0.00 2.59
3567 3657 6.471198 TGCGTTCTTACAAATATCTGTCTACG 59.529 38.462 0.00 0.00 0.00 3.51
3691 3851 4.155826 TCGTGATTGTGGGAAAGCTATTTG 59.844 41.667 0.00 0.00 0.00 2.32
3823 3986 2.033832 GCTGTTGCAAAAACATCAACCG 60.034 45.455 0.00 0.00 39.30 4.44
3925 4094 6.179756 TGGCACATATTTATCAACTGTGTCT 58.820 36.000 7.06 0.00 41.68 3.41
3964 4133 4.910195 TCTGTGGACAAGCAACAATCTAT 58.090 39.130 0.00 0.00 0.00 1.98
3985 4156 9.950496 ATCTATGAGACACTGTTTGTTATCTTT 57.050 29.630 0.00 0.00 39.17 2.52
4052 4223 8.853077 ATTCAACATTGTCACTCTTCAATAGA 57.147 30.769 0.00 0.00 33.69 1.98
4132 4304 7.857404 ACTTGGTAGCCTACATCTATGTATT 57.143 36.000 3.95 0.00 41.92 1.89
4138 4310 7.815068 GGTAGCCTACATCTATGTATTGAAGTG 59.185 40.741 3.95 0.00 41.92 3.16
4139 4311 6.226787 AGCCTACATCTATGTATTGAAGTGC 58.773 40.000 3.39 1.00 41.92 4.40
4184 4356 6.500049 AGGATAATAAAGAGCATAGTCTGGCT 59.500 38.462 0.88 0.88 44.48 4.75
4224 4396 1.621317 TGTCCGAGTTGTGGATTAGCA 59.379 47.619 0.00 0.00 37.93 3.49
4296 4469 9.318041 CTTTTGTGTGAGACGATTTTTGTATAG 57.682 33.333 0.00 0.00 0.00 1.31
4324 4497 6.037610 CAGCAGTCACTTTTTCAGACTTAAGT 59.962 38.462 8.13 8.13 40.42 2.24
4483 4692 1.071385 CCATCTCTCCACCAGGTATGC 59.929 57.143 0.00 0.00 35.89 3.14
4527 4737 9.683069 CCATAATTGCATCTGAGTAAATTTACC 57.317 33.333 21.92 14.77 34.19 2.85
4558 4795 9.041354 TGGCAATATTTAATTGTAAGGAACCTT 57.959 29.630 10.97 10.97 39.83 3.50
4611 4848 6.262601 AGTTAACGTGTTCAAGGTCATTTTG 58.737 36.000 0.00 0.00 0.00 2.44
4728 4966 8.439971 TGGATAGGTCAGCATGTTATTAATCTT 58.560 33.333 0.00 0.00 37.40 2.40
4966 5207 2.037641 CCATCACTGTGTGGAGAGAACA 59.962 50.000 18.57 0.00 37.72 3.18
4980 5221 8.137437 TGTGGAGAGAACAATTTTTCTGAATTC 58.863 33.333 11.51 0.00 35.90 2.17
4988 5229 6.752168 ACAATTTTTCTGAATTCAGGTCCAG 58.248 36.000 30.33 18.10 43.91 3.86
4993 5234 3.445008 TCTGAATTCAGGTCCAGCTACT 58.555 45.455 30.33 0.00 43.91 2.57
5154 5404 3.079578 GGAGTTTGGCCTAACAGGTAAC 58.920 50.000 28.04 13.28 37.80 2.50
5165 5415 3.895704 AACAGGTAACATCCCTTGGTT 57.104 42.857 0.00 0.00 41.41 3.67
5167 5417 2.041216 ACAGGTAACATCCCTTGGTTCC 59.959 50.000 0.00 0.00 41.41 3.62
5192 5442 5.757886 TGTATTGTCTTTTGTAAGCTGTGC 58.242 37.500 0.00 0.00 0.00 4.57
5195 5445 0.234625 TCTTTTGTAAGCTGTGCGCG 59.765 50.000 0.00 0.00 45.59 6.86
5196 5446 0.725784 CTTTTGTAAGCTGTGCGCGG 60.726 55.000 8.83 0.38 45.59 6.46
5233 5487 6.256975 GCCGTTTTGTATTGTTCCTTCTTTTT 59.743 34.615 0.00 0.00 0.00 1.94
5236 5490 8.748582 CGTTTTGTATTGTTCCTTCTTTTTACC 58.251 33.333 0.00 0.00 0.00 2.85
5237 5491 9.589111 GTTTTGTATTGTTCCTTCTTTTTACCA 57.411 29.630 0.00 0.00 0.00 3.25
5240 5494 8.528044 TGTATTGTTCCTTCTTTTTACCAGTT 57.472 30.769 0.00 0.00 0.00 3.16
5241 5495 9.629878 TGTATTGTTCCTTCTTTTTACCAGTTA 57.370 29.630 0.00 0.00 0.00 2.24
5300 5555 3.715871 TGGCAACATCTTTCACGGA 57.284 47.368 0.00 0.00 46.17 4.69
5397 5652 1.478916 GTGCTCTGGTCCCTTCTACTC 59.521 57.143 0.00 0.00 0.00 2.59
5644 5902 1.820519 GATGGAAATGGCAGCTGACAA 59.179 47.619 29.42 10.42 36.16 3.18
5664 5922 4.096382 ACAATAGGGTAGCATTTTCAAGCG 59.904 41.667 0.00 0.00 35.48 4.68
5701 5963 3.950078 GGCACGTGTGTAGTCTAGTATC 58.050 50.000 18.38 0.00 0.00 2.24
5702 5964 3.376234 GGCACGTGTGTAGTCTAGTATCA 59.624 47.826 18.38 0.00 0.00 2.15
5719 5985 4.759693 AGTATCAAAATGCGAACCTTGTCA 59.240 37.500 0.00 0.00 0.00 3.58
5723 5989 5.698832 TCAAAATGCGAACCTTGTCATTAG 58.301 37.500 0.00 0.00 0.00 1.73
5739 6005 4.530161 GTCATTAGGCCATCTGGTAGAGAT 59.470 45.833 5.01 0.00 42.70 2.75
5740 6006 5.717178 GTCATTAGGCCATCTGGTAGAGATA 59.283 44.000 5.01 0.00 39.64 1.98
5753 6019 6.479990 TCTGGTAGAGATAATTTTGTCATGCG 59.520 38.462 0.00 0.00 0.00 4.73
5759 6025 7.688372 AGAGATAATTTTGTCATGCGTACTTG 58.312 34.615 0.00 0.00 0.00 3.16
5771 6037 4.082274 TGCGTACTTGCATGATTGAAAG 57.918 40.909 6.60 0.00 43.32 2.62
5781 6047 4.397103 TGCATGATTGAAAGGATGAGACAC 59.603 41.667 0.00 0.00 0.00 3.67
5806 6073 6.237490 CGAGAAGCATTTTCTGAATGAATTGC 60.237 38.462 3.12 0.00 40.99 3.56
5808 6075 6.590292 AGAAGCATTTTCTGAATGAATTGCTG 59.410 34.615 13.29 0.00 45.50 4.41
5815 6082 2.686405 CTGAATGAATTGCTGGCAGCTA 59.314 45.455 36.50 30.91 42.97 3.32
5831 6098 3.243334 GCAGCTATTCTCATTTTGGCTCC 60.243 47.826 0.00 0.00 0.00 4.70
5872 6139 8.593945 AAAAGGGATTAATTCTCAGTTATGCA 57.406 30.769 0.00 0.00 0.00 3.96
5873 6140 7.573968 AAGGGATTAATTCTCAGTTATGCAC 57.426 36.000 0.00 0.00 0.00 4.57
5876 6143 7.500559 AGGGATTAATTCTCAGTTATGCACTTC 59.499 37.037 0.00 0.00 30.92 3.01
5892 6159 6.992063 TGCACTTCCATCTATTTTCTTCTC 57.008 37.500 0.00 0.00 0.00 2.87
5913 6180 9.372369 CTTCTCTATGAAGTAGGTAGTTTTTGG 57.628 37.037 0.00 0.00 45.26 3.28
5914 6181 7.848128 TCTCTATGAAGTAGGTAGTTTTTGGG 58.152 38.462 0.00 0.00 0.00 4.12
5915 6182 7.456902 TCTCTATGAAGTAGGTAGTTTTTGGGT 59.543 37.037 0.00 0.00 0.00 4.51
5916 6183 7.391620 TCTATGAAGTAGGTAGTTTTTGGGTG 58.608 38.462 0.00 0.00 0.00 4.61
5917 6184 5.633655 TGAAGTAGGTAGTTTTTGGGTGA 57.366 39.130 0.00 0.00 0.00 4.02
5918 6185 5.617252 TGAAGTAGGTAGTTTTTGGGTGAG 58.383 41.667 0.00 0.00 0.00 3.51
5923 6190 3.072622 AGGTAGTTTTTGGGTGAGGTCTC 59.927 47.826 0.00 0.00 0.00 3.36
5924 6191 3.072622 GGTAGTTTTTGGGTGAGGTCTCT 59.927 47.826 0.00 0.00 0.00 3.10
5929 6196 1.938585 TTGGGTGAGGTCTCTCGAAT 58.061 50.000 0.00 0.00 42.79 3.34
5944 6211 7.201565 GGTCTCTCGAATCTTCAATTTGGTTAG 60.202 40.741 0.00 0.00 0.00 2.34
5953 6220 7.452880 TCTTCAATTTGGTTAGATGTGAAGG 57.547 36.000 9.82 0.00 40.42 3.46
5955 6222 5.886609 TCAATTTGGTTAGATGTGAAGGGA 58.113 37.500 0.00 0.00 0.00 4.20
5968 6235 3.135712 TGTGAAGGGAAGTAGAGTTTGCA 59.864 43.478 0.00 0.00 0.00 4.08
6014 6281 3.956848 TGAGTGCTATGCTCATCTGTACT 59.043 43.478 0.00 6.36 37.98 2.73
6045 6312 3.009723 CCATCCAGTAATTTGTGTCGCT 58.990 45.455 0.00 0.00 0.00 4.93
6067 6334 3.137446 AGCTTGTCTGCAGACTTGAAT 57.863 42.857 38.81 22.37 44.99 2.57
6069 6336 3.887716 AGCTTGTCTGCAGACTTGAATTT 59.112 39.130 38.81 19.72 44.99 1.82
6071 6338 4.261322 GCTTGTCTGCAGACTTGAATTTCA 60.261 41.667 38.81 18.91 44.99 2.69
6074 6341 4.214437 GTCTGCAGACTTGAATTTCAACG 58.786 43.478 34.54 7.24 41.65 4.10
6081 6348 6.401153 GCAGACTTGAATTTCAACGTAGGTAG 60.401 42.308 7.74 0.00 32.21 3.18
6097 6364 8.152309 ACGTAGGTAGCTTGTATAGAGTAAAG 57.848 38.462 0.00 0.00 0.00 1.85
6114 6381 5.308825 AGTAAAGGAATTCCAGTGTCACTG 58.691 41.667 26.22 23.72 45.53 3.66
6120 6387 1.967319 TTCCAGTGTCACTGCTTTCC 58.033 50.000 25.00 0.00 44.63 3.13
6121 6388 0.108585 TCCAGTGTCACTGCTTTCCC 59.891 55.000 25.00 0.00 44.63 3.97
6132 6399 3.070015 CACTGCTTTCCCATCTTTTGGTT 59.930 43.478 0.00 0.00 44.83 3.67
6151 6418 3.052869 GGTTTTCCTCCAATATCCCAGGT 60.053 47.826 0.00 0.00 36.94 4.00
6155 6422 2.777692 TCCTCCAATATCCCAGGTTGTC 59.222 50.000 0.00 0.00 0.00 3.18
6158 6425 1.476833 CCAATATCCCAGGTTGTCCGG 60.477 57.143 0.00 0.00 39.05 5.14
6173 6440 5.172934 GTTGTCCGGTATACTGATTTCACA 58.827 41.667 13.55 5.09 0.00 3.58
6200 6467 7.776618 TGTGAATCTCAAGTCTTAGTAAGGA 57.223 36.000 10.02 0.00 0.00 3.36
6203 6470 8.958506 GTGAATCTCAAGTCTTAGTAAGGACTA 58.041 37.037 10.02 0.00 41.28 2.59
6213 6480 6.612863 GTCTTAGTAAGGACTAAATGGGGGTA 59.387 42.308 10.02 0.00 45.43 3.69
6218 6485 8.591526 AGTAAGGACTAAATGGGGGTATTTAT 57.408 34.615 0.00 0.00 33.43 1.40
6219 6486 9.693327 AGTAAGGACTAAATGGGGGTATTTATA 57.307 33.333 0.00 0.00 33.43 0.98
6223 6490 8.612145 AGGACTAAATGGGGGTATTTATATGTC 58.388 37.037 0.00 0.00 33.43 3.06
6224 6491 8.387813 GGACTAAATGGGGGTATTTATATGTCA 58.612 37.037 0.00 0.00 32.50 3.58
6225 6492 9.449719 GACTAAATGGGGGTATTTATATGTCAG 57.550 37.037 0.00 0.00 33.43 3.51
6226 6493 8.390921 ACTAAATGGGGGTATTTATATGTCAGG 58.609 37.037 0.00 0.00 33.43 3.86
6227 6494 7.415004 AAATGGGGGTATTTATATGTCAGGA 57.585 36.000 0.00 0.00 0.00 3.86
6228 6495 7.415004 AATGGGGGTATTTATATGTCAGGAA 57.585 36.000 0.00 0.00 0.00 3.36
6229 6496 6.195600 TGGGGGTATTTATATGTCAGGAAC 57.804 41.667 0.00 0.00 0.00 3.62
6230 6497 5.073965 TGGGGGTATTTATATGTCAGGAACC 59.926 44.000 0.00 0.00 0.00 3.62
6231 6498 5.312443 GGGGGTATTTATATGTCAGGAACCT 59.688 44.000 0.00 0.00 0.00 3.50
6232 6499 6.238648 GGGGTATTTATATGTCAGGAACCTG 58.761 44.000 14.01 14.01 44.86 4.00
6250 6517 2.947852 CTGACAAGGATCGAACGAACT 58.052 47.619 0.12 0.31 0.00 3.01
6251 6518 4.092771 CTGACAAGGATCGAACGAACTA 57.907 45.455 0.12 0.00 0.00 2.24
6252 6519 4.482386 CTGACAAGGATCGAACGAACTAA 58.518 43.478 0.12 0.00 0.00 2.24
6253 6520 4.873817 TGACAAGGATCGAACGAACTAAA 58.126 39.130 0.12 0.00 0.00 1.85
6254 6521 4.682860 TGACAAGGATCGAACGAACTAAAC 59.317 41.667 0.12 0.32 0.00 2.01
6255 6522 4.624015 ACAAGGATCGAACGAACTAAACA 58.376 39.130 0.12 0.00 0.00 2.83
6257 6524 4.516365 AGGATCGAACGAACTAAACACT 57.484 40.909 0.12 0.00 0.00 3.55
6258 6525 4.483311 AGGATCGAACGAACTAAACACTC 58.517 43.478 0.12 0.00 0.00 3.51
6259 6526 4.022589 AGGATCGAACGAACTAAACACTCA 60.023 41.667 0.12 0.00 0.00 3.41
6260 6527 4.682860 GGATCGAACGAACTAAACACTCAA 59.317 41.667 0.12 0.00 0.00 3.02
6261 6528 5.388164 GGATCGAACGAACTAAACACTCAAC 60.388 44.000 0.12 0.00 0.00 3.18
6262 6529 4.675510 TCGAACGAACTAAACACTCAACT 58.324 39.130 0.00 0.00 0.00 3.16
6263 6530 5.820131 TCGAACGAACTAAACACTCAACTA 58.180 37.500 0.00 0.00 0.00 2.24
6266 6533 5.840940 ACGAACTAAACACTCAACTATGC 57.159 39.130 0.00 0.00 0.00 3.14
6267 6534 4.384846 ACGAACTAAACACTCAACTATGCG 59.615 41.667 0.00 0.00 0.00 4.73
6269 6536 5.118050 CGAACTAAACACTCAACTATGCGAA 59.882 40.000 0.00 0.00 0.00 4.70
6270 6537 6.183360 CGAACTAAACACTCAACTATGCGAAT 60.183 38.462 0.00 0.00 0.00 3.34
6271 6538 7.435068 AACTAAACACTCAACTATGCGAATT 57.565 32.000 0.00 0.00 0.00 2.17
6272 6539 7.061752 ACTAAACACTCAACTATGCGAATTC 57.938 36.000 0.00 0.00 0.00 2.17
6273 6540 5.940192 AAACACTCAACTATGCGAATTCA 57.060 34.783 6.22 0.00 0.00 2.57
6274 6541 5.536554 AACACTCAACTATGCGAATTCAG 57.463 39.130 6.22 0.00 0.00 3.02
6275 6542 4.820897 ACACTCAACTATGCGAATTCAGA 58.179 39.130 6.22 0.00 0.00 3.27
6276 6543 4.867047 ACACTCAACTATGCGAATTCAGAG 59.133 41.667 6.22 0.00 0.00 3.35
6277 6544 4.269603 CACTCAACTATGCGAATTCAGAGG 59.730 45.833 6.22 0.00 30.07 3.69
6279 6546 4.183865 TCAACTATGCGAATTCAGAGGTG 58.816 43.478 6.22 3.48 42.58 4.00
6280 6547 4.081697 TCAACTATGCGAATTCAGAGGTGA 60.082 41.667 6.22 5.88 46.16 4.02
6281 6548 4.471904 ACTATGCGAATTCAGAGGTGAA 57.528 40.909 6.22 0.00 46.81 3.18
6295 6562 7.928307 TCAGAGGTGAATTTAGGAGAATTTG 57.072 36.000 0.00 0.00 29.75 2.32
6296 6563 6.375455 TCAGAGGTGAATTTAGGAGAATTTGC 59.625 38.462 0.00 0.00 29.75 3.68
6298 6565 4.105486 GGTGAATTTAGGAGAATTTGCGC 58.895 43.478 0.00 0.00 29.75 6.09
6299 6566 4.142381 GGTGAATTTAGGAGAATTTGCGCT 60.142 41.667 9.73 0.00 29.75 5.92
6301 6568 6.195165 GTGAATTTAGGAGAATTTGCGCTAG 58.805 40.000 9.73 0.00 29.75 3.42
6302 6569 5.296780 TGAATTTAGGAGAATTTGCGCTAGG 59.703 40.000 9.73 0.00 29.75 3.02
6303 6570 2.910688 TAGGAGAATTTGCGCTAGGG 57.089 50.000 9.73 1.65 0.00 3.53
6304 6571 0.912486 AGGAGAATTTGCGCTAGGGT 59.088 50.000 9.73 0.00 0.00 4.34
6305 6572 1.282157 AGGAGAATTTGCGCTAGGGTT 59.718 47.619 9.73 0.00 0.00 4.11
6306 6573 2.092323 GGAGAATTTGCGCTAGGGTTT 58.908 47.619 9.73 0.00 0.00 3.27
6307 6574 2.159379 GGAGAATTTGCGCTAGGGTTTG 60.159 50.000 9.73 0.00 0.00 2.93
6309 6576 3.681593 AGAATTTGCGCTAGGGTTTGTA 58.318 40.909 9.73 0.00 0.00 2.41
6310 6577 4.270008 AGAATTTGCGCTAGGGTTTGTAT 58.730 39.130 9.73 0.00 0.00 2.29
6311 6578 4.705023 AGAATTTGCGCTAGGGTTTGTATT 59.295 37.500 9.73 0.00 0.00 1.89
6312 6579 3.840890 TTTGCGCTAGGGTTTGTATTG 57.159 42.857 9.73 0.00 0.00 1.90
6313 6580 1.091537 TGCGCTAGGGTTTGTATTGC 58.908 50.000 9.73 0.00 0.00 3.56
6314 6581 1.091537 GCGCTAGGGTTTGTATTGCA 58.908 50.000 8.77 0.00 0.00 4.08
6315 6582 1.064060 GCGCTAGGGTTTGTATTGCAG 59.936 52.381 8.77 0.00 0.00 4.41
6316 6583 1.064060 CGCTAGGGTTTGTATTGCAGC 59.936 52.381 0.00 0.00 0.00 5.25
6319 6586 3.056891 GCTAGGGTTTGTATTGCAGCAAA 60.057 43.478 12.97 8.45 32.89 3.68
6321 6588 2.299867 AGGGTTTGTATTGCAGCAAAGG 59.700 45.455 12.97 0.00 35.58 3.11
6322 6589 2.612721 GGGTTTGTATTGCAGCAAAGGG 60.613 50.000 12.97 0.00 35.58 3.95
6323 6590 2.612721 GGTTTGTATTGCAGCAAAGGGG 60.613 50.000 12.97 0.00 35.58 4.79
6324 6591 2.298729 GTTTGTATTGCAGCAAAGGGGA 59.701 45.455 12.97 0.00 35.58 4.81
6325 6592 2.300956 TGTATTGCAGCAAAGGGGAA 57.699 45.000 12.97 0.00 0.00 3.97
6327 6594 2.562298 TGTATTGCAGCAAAGGGGAAAG 59.438 45.455 12.97 0.00 0.00 2.62
6328 6595 1.720781 ATTGCAGCAAAGGGGAAAGT 58.279 45.000 12.97 0.00 0.00 2.66
6329 6596 2.373335 TTGCAGCAAAGGGGAAAGTA 57.627 45.000 4.99 0.00 0.00 2.24
6330 6597 1.909700 TGCAGCAAAGGGGAAAGTAG 58.090 50.000 0.00 0.00 0.00 2.57
6331 6598 0.528017 GCAGCAAAGGGGAAAGTAGC 59.472 55.000 0.00 0.00 0.00 3.58
6332 6599 1.909700 CAGCAAAGGGGAAAGTAGCA 58.090 50.000 0.00 0.00 0.00 3.49
6333 6600 2.238521 CAGCAAAGGGGAAAGTAGCAA 58.761 47.619 0.00 0.00 0.00 3.91
6337 6604 1.911057 AAGGGGAAAGTAGCAAGCAC 58.089 50.000 0.00 0.00 0.00 4.40
6338 6605 0.321653 AGGGGAAAGTAGCAAGCACG 60.322 55.000 0.00 0.00 0.00 5.34
6339 6606 1.502190 GGGAAAGTAGCAAGCACGC 59.498 57.895 0.00 0.00 0.00 5.34
6341 6608 1.234615 GGAAAGTAGCAAGCACGCCA 61.235 55.000 0.00 0.00 0.00 5.69
6342 6609 0.110192 GAAAGTAGCAAGCACGCCAC 60.110 55.000 0.00 0.00 0.00 5.01
6344 6611 1.230635 AAGTAGCAAGCACGCCACAG 61.231 55.000 0.00 0.00 0.00 3.66
6345 6612 2.358615 TAGCAAGCACGCCACAGG 60.359 61.111 0.00 0.00 0.00 4.00
6356 6623 3.717294 CCACAGGCGGCTAGGGTT 61.717 66.667 12.74 0.00 0.00 4.11
6357 6624 2.351276 CACAGGCGGCTAGGGTTT 59.649 61.111 12.74 0.00 0.00 3.27
6359 6626 0.180406 CACAGGCGGCTAGGGTTTAT 59.820 55.000 12.74 0.00 0.00 1.40
6362 6629 1.054231 AGGCGGCTAGGGTTTATACC 58.946 55.000 11.03 0.00 44.22 2.73
6382 6649 9.515226 TTATACCCAGTTAGAATAATTCATGCC 57.485 33.333 0.00 0.00 0.00 4.40
6383 6650 5.140454 ACCCAGTTAGAATAATTCATGCCC 58.860 41.667 0.00 0.00 0.00 5.36
6386 6653 6.098124 CCCAGTTAGAATAATTCATGCCCAAA 59.902 38.462 0.00 0.00 0.00 3.28
6387 6654 7.364585 CCCAGTTAGAATAATTCATGCCCAAAA 60.365 37.037 0.00 0.00 0.00 2.44
6388 6655 7.492344 CCAGTTAGAATAATTCATGCCCAAAAC 59.508 37.037 0.00 0.00 0.00 2.43
6390 6657 8.253113 AGTTAGAATAATTCATGCCCAAAACTG 58.747 33.333 0.00 0.00 0.00 3.16
6391 6658 6.855763 AGAATAATTCATGCCCAAAACTGA 57.144 33.333 0.00 0.00 0.00 3.41
6393 6660 6.664816 AGAATAATTCATGCCCAAAACTGAGA 59.335 34.615 0.00 0.00 0.00 3.27
6394 6661 4.796038 AATTCATGCCCAAAACTGAGAG 57.204 40.909 0.00 0.00 0.00 3.20
6396 6663 0.169672 CATGCCCAAAACTGAGAGCG 59.830 55.000 0.00 0.00 0.00 5.03
6398 6665 0.603707 TGCCCAAAACTGAGAGCGAG 60.604 55.000 0.00 0.00 0.00 5.03
6399 6666 1.301677 GCCCAAAACTGAGAGCGAGG 61.302 60.000 0.00 0.00 0.00 4.63
6400 6667 0.674895 CCCAAAACTGAGAGCGAGGG 60.675 60.000 0.00 0.00 0.00 4.30
6401 6668 0.674895 CCAAAACTGAGAGCGAGGGG 60.675 60.000 0.00 0.00 0.00 4.79
6402 6669 0.035458 CAAAACTGAGAGCGAGGGGT 59.965 55.000 0.00 0.00 0.00 4.95
6403 6670 0.035458 AAAACTGAGAGCGAGGGGTG 59.965 55.000 0.00 0.00 0.00 4.61
6404 6671 1.831652 AAACTGAGAGCGAGGGGTGG 61.832 60.000 0.00 0.00 0.00 4.61
6406 6673 4.704103 TGAGAGCGAGGGGTGGCT 62.704 66.667 0.00 0.00 43.42 4.75
6409 7248 0.539901 GAGAGCGAGGGGTGGCTATA 60.540 60.000 0.00 0.00 40.16 1.31
6428 7267 8.848474 GGCTATATAGGCAATACAAAGAGAAA 57.152 34.615 26.76 0.00 46.94 2.52
6429 7268 9.284968 GGCTATATAGGCAATACAAAGAGAAAA 57.715 33.333 26.76 0.00 46.94 2.29
6433 7272 5.382618 AGGCAATACAAAGAGAAAAGCAG 57.617 39.130 0.00 0.00 0.00 4.24
6434 7273 5.072741 AGGCAATACAAAGAGAAAAGCAGA 58.927 37.500 0.00 0.00 0.00 4.26
6435 7274 5.536161 AGGCAATACAAAGAGAAAAGCAGAA 59.464 36.000 0.00 0.00 0.00 3.02
6436 7275 5.631096 GGCAATACAAAGAGAAAAGCAGAAC 59.369 40.000 0.00 0.00 0.00 3.01
6438 7277 6.361748 GCAATACAAAGAGAAAAGCAGAACAG 59.638 38.462 0.00 0.00 0.00 3.16
6439 7278 7.642669 CAATACAAAGAGAAAAGCAGAACAGA 58.357 34.615 0.00 0.00 0.00 3.41
6442 7281 6.558909 ACAAAGAGAAAAGCAGAACAGAAAG 58.441 36.000 0.00 0.00 0.00 2.62
6444 7283 4.202441 AGAGAAAAGCAGAACAGAAAGCA 58.798 39.130 0.00 0.00 0.00 3.91
6445 7284 4.641989 AGAGAAAAGCAGAACAGAAAGCAA 59.358 37.500 0.00 0.00 0.00 3.91
6446 7285 5.126061 AGAGAAAAGCAGAACAGAAAGCAAA 59.874 36.000 0.00 0.00 0.00 3.68
6447 7286 5.346522 AGAAAAGCAGAACAGAAAGCAAAG 58.653 37.500 0.00 0.00 0.00 2.77
6448 7287 4.989279 AAAGCAGAACAGAAAGCAAAGA 57.011 36.364 0.00 0.00 0.00 2.52
6449 7288 3.978718 AGCAGAACAGAAAGCAAAGAC 57.021 42.857 0.00 0.00 0.00 3.01
6450 7289 3.282021 AGCAGAACAGAAAGCAAAGACA 58.718 40.909 0.00 0.00 0.00 3.41
6451 7290 3.314635 AGCAGAACAGAAAGCAAAGACAG 59.685 43.478 0.00 0.00 0.00 3.51
6452 7291 3.313526 GCAGAACAGAAAGCAAAGACAGA 59.686 43.478 0.00 0.00 0.00 3.41
6453 7292 4.554330 GCAGAACAGAAAGCAAAGACAGAG 60.554 45.833 0.00 0.00 0.00 3.35
6455 7294 2.923121 ACAGAAAGCAAAGACAGAGCA 58.077 42.857 0.00 0.00 0.00 4.26
6456 7295 2.615912 ACAGAAAGCAAAGACAGAGCAC 59.384 45.455 0.00 0.00 0.00 4.40
6457 7296 2.615447 CAGAAAGCAAAGACAGAGCACA 59.385 45.455 0.00 0.00 0.00 4.57
6458 7297 3.252701 CAGAAAGCAAAGACAGAGCACAT 59.747 43.478 0.00 0.00 0.00 3.21
6459 7298 3.252701 AGAAAGCAAAGACAGAGCACATG 59.747 43.478 0.00 0.00 0.00 3.21
6460 7299 1.531423 AGCAAAGACAGAGCACATGG 58.469 50.000 0.00 0.00 0.00 3.66
6461 7300 0.109412 GCAAAGACAGAGCACATGGC 60.109 55.000 0.00 0.00 45.30 4.40
6478 7317 2.431771 CGTGTCGGGCGATGAACA 60.432 61.111 0.00 0.00 0.00 3.18
6479 7318 2.444624 CGTGTCGGGCGATGAACAG 61.445 63.158 0.00 0.00 0.00 3.16
6480 7319 2.434185 TGTCGGGCGATGAACAGC 60.434 61.111 0.00 0.00 0.00 4.40
6481 7320 3.554692 GTCGGGCGATGAACAGCG 61.555 66.667 8.09 8.09 43.89 5.18
6482 7321 3.754530 TCGGGCGATGAACAGCGA 61.755 61.111 16.27 0.00 43.75 4.93
6486 7325 3.862124 GCGATGAACAGCGACACT 58.138 55.556 16.27 0.00 43.75 3.55
6487 7326 1.704582 GCGATGAACAGCGACACTC 59.295 57.895 16.27 0.00 43.75 3.51
6488 7327 1.983907 CGATGAACAGCGACACTCG 59.016 57.895 6.62 0.00 43.75 4.18
6489 7328 1.406219 CGATGAACAGCGACACTCGG 61.406 60.000 6.62 0.00 43.75 4.63
6490 7329 1.078759 GATGAACAGCGACACTCGGG 61.079 60.000 0.00 0.00 40.84 5.14
6491 7330 2.432628 GAACAGCGACACTCGGGG 60.433 66.667 0.00 0.00 40.84 5.73
6492 7331 4.681978 AACAGCGACACTCGGGGC 62.682 66.667 0.00 0.00 40.84 5.80
6497 7336 3.822192 CGACACTCGGGGCGATGA 61.822 66.667 0.00 0.00 36.00 2.92
6498 7337 2.815308 GACACTCGGGGCGATGAT 59.185 61.111 0.00 0.00 34.61 2.45
6499 7338 1.792118 CGACACTCGGGGCGATGATA 61.792 60.000 0.00 0.00 36.00 2.15
6500 7339 0.039074 GACACTCGGGGCGATGATAG 60.039 60.000 0.00 0.00 34.61 2.08
6501 7340 1.373497 CACTCGGGGCGATGATAGC 60.373 63.158 0.00 0.00 34.61 2.97
6507 7346 3.642755 GGCGATGATAGCCGTTGG 58.357 61.111 0.00 0.00 45.58 3.77
6508 7347 1.069090 GGCGATGATAGCCGTTGGA 59.931 57.895 0.00 0.00 45.58 3.53
6509 7348 0.320771 GGCGATGATAGCCGTTGGAT 60.321 55.000 0.00 0.00 45.58 3.41
6510 7349 0.792640 GCGATGATAGCCGTTGGATG 59.207 55.000 0.00 0.00 0.00 3.51
6511 7350 1.605457 GCGATGATAGCCGTTGGATGA 60.605 52.381 0.00 0.00 0.00 2.92
6512 7351 2.754472 CGATGATAGCCGTTGGATGAA 58.246 47.619 0.00 0.00 0.00 2.57
6513 7352 2.733552 CGATGATAGCCGTTGGATGAAG 59.266 50.000 0.00 0.00 0.00 3.02
6514 7353 3.552890 CGATGATAGCCGTTGGATGAAGA 60.553 47.826 0.00 0.00 0.00 2.87
6515 7354 3.904800 TGATAGCCGTTGGATGAAGAA 57.095 42.857 0.00 0.00 0.00 2.52
6516 7355 4.422073 TGATAGCCGTTGGATGAAGAAT 57.578 40.909 0.00 0.00 0.00 2.40
6517 7356 4.380531 TGATAGCCGTTGGATGAAGAATC 58.619 43.478 0.00 0.00 34.19 2.52
6518 7357 4.101585 TGATAGCCGTTGGATGAAGAATCT 59.898 41.667 0.00 0.00 35.43 2.40
6519 7358 5.304357 TGATAGCCGTTGGATGAAGAATCTA 59.696 40.000 0.00 0.00 35.43 1.98
6520 7359 3.798202 AGCCGTTGGATGAAGAATCTAC 58.202 45.455 0.00 0.00 35.43 2.59
6521 7360 2.540101 GCCGTTGGATGAAGAATCTACG 59.460 50.000 0.00 0.00 40.16 3.51
6522 7361 3.737047 GCCGTTGGATGAAGAATCTACGA 60.737 47.826 1.57 0.00 41.56 3.43
6523 7362 3.797256 CCGTTGGATGAAGAATCTACGAC 59.203 47.826 1.57 0.00 41.56 4.34
6524 7363 4.440250 CCGTTGGATGAAGAATCTACGACT 60.440 45.833 1.57 0.00 41.56 4.18
6525 7364 4.500837 CGTTGGATGAAGAATCTACGACTG 59.499 45.833 0.00 0.00 41.56 3.51
6526 7365 5.651530 GTTGGATGAAGAATCTACGACTGA 58.348 41.667 0.00 0.00 35.43 3.41
6527 7366 6.276847 GTTGGATGAAGAATCTACGACTGAT 58.723 40.000 0.00 0.00 35.43 2.90
6528 7367 5.836347 TGGATGAAGAATCTACGACTGATG 58.164 41.667 0.00 0.00 35.43 3.07
6529 7368 5.594317 TGGATGAAGAATCTACGACTGATGA 59.406 40.000 0.00 0.00 35.43 2.92
6530 7369 5.918011 GGATGAAGAATCTACGACTGATGAC 59.082 44.000 0.00 0.00 35.43 3.06
6531 7370 5.897377 TGAAGAATCTACGACTGATGACA 57.103 39.130 0.00 0.00 0.00 3.58
6532 7371 6.267496 TGAAGAATCTACGACTGATGACAA 57.733 37.500 0.00 0.00 0.00 3.18
6533 7372 6.325596 TGAAGAATCTACGACTGATGACAAG 58.674 40.000 0.00 0.00 0.00 3.16
6534 7373 4.677584 AGAATCTACGACTGATGACAAGC 58.322 43.478 0.00 0.00 0.00 4.01
6535 7374 2.941453 TCTACGACTGATGACAAGCC 57.059 50.000 0.00 0.00 0.00 4.35
6536 7375 2.167662 TCTACGACTGATGACAAGCCA 58.832 47.619 0.00 0.00 0.00 4.75
6537 7376 2.164422 TCTACGACTGATGACAAGCCAG 59.836 50.000 0.00 0.00 0.00 4.85
6538 7377 0.681733 ACGACTGATGACAAGCCAGT 59.318 50.000 7.85 7.85 43.11 4.00
6539 7378 1.073964 CGACTGATGACAAGCCAGTG 58.926 55.000 11.60 0.00 40.80 3.66
6540 7379 1.446907 GACTGATGACAAGCCAGTGG 58.553 55.000 4.20 4.20 40.80 4.00
6556 7395 1.274167 AGTGGCGAACCGTTATCTTCA 59.726 47.619 0.00 0.00 39.70 3.02
6558 7397 1.274167 TGGCGAACCGTTATCTTCACT 59.726 47.619 0.00 0.00 39.70 3.41
6565 7404 2.166664 ACCGTTATCTTCACTGGAGAGC 59.833 50.000 0.00 0.00 0.00 4.09
6569 7408 1.949799 ATCTTCACTGGAGAGCCACT 58.050 50.000 0.00 0.00 39.92 4.00
6570 7409 0.972134 TCTTCACTGGAGAGCCACTG 59.028 55.000 0.00 0.00 39.92 3.66
6571 7410 0.036577 CTTCACTGGAGAGCCACTGG 60.037 60.000 0.00 0.00 39.92 4.00
6573 7412 0.252421 TCACTGGAGAGCCACTGGAT 60.252 55.000 0.00 0.00 39.92 3.41
6574 7413 0.107800 CACTGGAGAGCCACTGGATG 60.108 60.000 0.00 0.00 39.92 3.51
6583 7422 1.825341 CCACTGGATGGCAGATCGA 59.175 57.895 0.00 0.00 43.24 3.59
6584 7423 0.531532 CCACTGGATGGCAGATCGAC 60.532 60.000 0.00 0.00 43.24 4.20
6585 7424 0.873312 CACTGGATGGCAGATCGACG 60.873 60.000 0.00 0.00 0.00 5.12
6586 7425 1.037579 ACTGGATGGCAGATCGACGA 61.038 55.000 0.00 0.00 0.00 4.20
6587 7426 0.596083 CTGGATGGCAGATCGACGAC 60.596 60.000 0.00 0.00 0.00 4.34
6588 7427 1.037579 TGGATGGCAGATCGACGACT 61.038 55.000 0.00 0.00 0.00 4.18
6590 7429 0.382158 GATGGCAGATCGACGACTGA 59.618 55.000 22.95 9.91 36.38 3.41
6591 7430 0.101399 ATGGCAGATCGACGACTGAC 59.899 55.000 22.95 21.46 41.93 3.51
6593 7432 1.658686 GGCAGATCGACGACTGACCT 61.659 60.000 22.95 5.91 36.28 3.85
6594 7433 0.171455 GCAGATCGACGACTGACCTT 59.829 55.000 22.95 0.00 36.38 3.50
6595 7434 1.901538 CAGATCGACGACTGACCTTG 58.098 55.000 17.22 0.05 36.38 3.61
6597 7436 0.171455 GATCGACGACTGACCTTGCT 59.829 55.000 0.00 0.00 0.00 3.91
6598 7437 0.603569 ATCGACGACTGACCTTGCTT 59.396 50.000 0.00 0.00 0.00 3.91
6600 7439 1.009389 CGACGACTGACCTTGCTTCC 61.009 60.000 0.00 0.00 0.00 3.46
6602 7441 0.468226 ACGACTGACCTTGCTTCCAA 59.532 50.000 0.00 0.00 0.00 3.53
6603 7442 0.868406 CGACTGACCTTGCTTCCAAC 59.132 55.000 0.00 0.00 0.00 3.77
6604 7443 1.810031 CGACTGACCTTGCTTCCAACA 60.810 52.381 0.00 0.00 0.00 3.33
6605 7444 1.604278 GACTGACCTTGCTTCCAACAC 59.396 52.381 0.00 0.00 0.00 3.32
6606 7445 0.588252 CTGACCTTGCTTCCAACACG 59.412 55.000 0.00 0.00 0.00 4.49
6608 7447 1.444119 GACCTTGCTTCCAACACGCA 61.444 55.000 0.00 0.00 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.434884 AGCCGACGATGCACTTGG 60.435 61.111 0.00 0.00 0.00 3.61
394 401 5.011329 AGGAAACACACGGACACTTTAGATA 59.989 40.000 0.00 0.00 0.00 1.98
427 434 3.128589 AGTGACGTGTGAAGCAACATTTT 59.871 39.130 0.00 0.00 31.49 1.82
439 446 2.143122 AGGTATTTGCAGTGACGTGTG 58.857 47.619 0.00 0.00 0.00 3.82
448 455 7.761249 CCTTTTTGGAGATTAAGGTATTTGCAG 59.239 37.037 0.00 0.00 38.35 4.41
484 491 2.290071 CGGGTCTAGAGAAAAGGCCAAA 60.290 50.000 5.01 0.00 40.71 3.28
538 545 3.402681 CTGTCCATGCCCGGGTCT 61.403 66.667 24.63 6.75 0.00 3.85
579 586 1.447314 CTGAACCCGAACTACGCCC 60.447 63.158 0.00 0.00 41.07 6.13
583 590 3.400255 AGAAAAGCTGAACCCGAACTAC 58.600 45.455 0.00 0.00 0.00 2.73
585 592 2.640316 AGAAAAGCTGAACCCGAACT 57.360 45.000 0.00 0.00 0.00 3.01
593 600 2.423577 GCTTCGGGTAGAAAAGCTGAA 58.576 47.619 0.00 0.00 46.26 3.02
595 602 1.087501 GGCTTCGGGTAGAAAAGCTG 58.912 55.000 6.32 0.00 43.80 4.24
615 622 1.130561 CCTTTTCGAGCTTTTAGGCCG 59.869 52.381 0.00 0.00 0.00 6.13
621 628 4.864704 TTAATGCCCTTTTCGAGCTTTT 57.135 36.364 0.00 0.00 0.00 2.27
627 634 7.639113 AAATAGTGATTAATGCCCTTTTCGA 57.361 32.000 0.00 0.00 0.00 3.71
702 721 7.775397 ACAGTGACCTTTTTGAATTGAAATG 57.225 32.000 0.00 0.00 0.00 2.32
712 731 4.997565 ACACATGAACAGTGACCTTTTTG 58.002 39.130 0.00 0.00 40.16 2.44
785 804 3.891400 TCGGGCCGGACGTTATCG 61.891 66.667 27.98 0.00 43.34 2.92
786 805 2.279054 GTCGGGCCGGACGTTATC 60.279 66.667 27.98 4.23 0.00 1.75
855 909 0.544697 GTAGGAAGGCGGATTTGGGA 59.455 55.000 0.00 0.00 0.00 4.37
1443 1502 5.344066 AGCATCAGTTCTTCAGTACATACG 58.656 41.667 0.00 0.00 0.00 3.06
1472 1531 1.066645 TCATCAGTAGCAGTGGCAGTG 60.067 52.381 18.01 18.01 44.61 3.66
1622 1681 3.507162 TTGGAGAACTTGCCAATCTCA 57.493 42.857 9.59 0.00 41.06 3.27
1681 1748 2.169832 ACCACAGTGAATTCTCGGTG 57.830 50.000 24.72 24.72 36.05 4.94
1920 1998 1.804396 TTTGCCCCTGTTGCATCACG 61.804 55.000 0.00 0.00 38.76 4.35
1971 2049 6.096673 TGCAACAGTAACATCACTAAGAGA 57.903 37.500 0.00 0.00 0.00 3.10
1996 2074 2.068837 ACTGCATTGTTCGCAAATGG 57.931 45.000 0.00 0.00 40.90 3.16
2026 2104 5.598417 AGTTCCTGCCAGTGTAAAAAGATTT 59.402 36.000 0.00 0.00 0.00 2.17
2083 2162 6.262273 TCAACCTCAAACCAGTTATTCAAGAC 59.738 38.462 0.00 0.00 0.00 3.01
2126 2205 5.841810 AGACAGAAGAGAAGTGTTTCAGAG 58.158 41.667 0.00 0.00 35.70 3.35
2159 2238 7.886629 ATGCAATACAGTTTTCTCCATATGT 57.113 32.000 1.24 0.00 0.00 2.29
2172 2251 6.094048 GTGTAGATGGTCAAATGCAATACAGT 59.906 38.462 0.00 0.00 0.00 3.55
2189 2268 4.574599 TCTCATCCGACATGTGTAGATG 57.425 45.455 17.40 17.40 38.89 2.90
2214 2293 7.331791 AGAAGTTACACAAGAACTCAAGAAGT 58.668 34.615 0.00 0.00 41.10 3.01
2215 2294 7.778470 AGAAGTTACACAAGAACTCAAGAAG 57.222 36.000 0.00 0.00 36.10 2.85
2216 2295 7.822334 TCAAGAAGTTACACAAGAACTCAAGAA 59.178 33.333 0.00 0.00 36.10 2.52
2217 2296 7.327975 TCAAGAAGTTACACAAGAACTCAAGA 58.672 34.615 0.00 0.00 36.10 3.02
2218 2297 7.278868 ACTCAAGAAGTTACACAAGAACTCAAG 59.721 37.037 0.00 0.00 36.10 3.02
2219 2298 7.103641 ACTCAAGAAGTTACACAAGAACTCAA 58.896 34.615 0.00 0.00 36.10 3.02
2220 2299 6.640518 ACTCAAGAAGTTACACAAGAACTCA 58.359 36.000 0.00 0.00 36.10 3.41
2221 2300 7.541122 AACTCAAGAAGTTACACAAGAACTC 57.459 36.000 0.00 0.00 46.55 3.01
2263 2342 5.864418 TCAATACATCACCCTGTAGTACC 57.136 43.478 0.00 0.00 35.21 3.34
2314 2393 2.835389 TGCACCCTTACCATAGTACCA 58.165 47.619 0.00 0.00 0.00 3.25
2353 2432 0.692476 ACTAATCCAGCAGGCACACA 59.308 50.000 0.00 0.00 33.74 3.72
2354 2433 1.089920 CACTAATCCAGCAGGCACAC 58.910 55.000 0.00 0.00 33.74 3.82
2357 2436 2.161855 CAAACACTAATCCAGCAGGCA 58.838 47.619 0.00 0.00 33.74 4.75
2362 2441 4.622740 GCAATTGTCAAACACTAATCCAGC 59.377 41.667 7.40 0.00 0.00 4.85
2363 2442 4.853196 CGCAATTGTCAAACACTAATCCAG 59.147 41.667 7.40 0.00 0.00 3.86
2392 2471 2.236146 TGTTCACACCAGCCTATACAGG 59.764 50.000 0.00 0.00 45.77 4.00
2393 2472 3.262420 GTGTTCACACCAGCCTATACAG 58.738 50.000 0.00 0.00 40.85 2.74
2454 2533 1.663695 CACGTTGACCACCAGTTTCT 58.336 50.000 0.00 0.00 0.00 2.52
2528 2607 9.203421 GTTTTTGGCTTTTTGCTAACTACATAT 57.797 29.630 0.00 0.00 41.84 1.78
2529 2608 7.654116 GGTTTTTGGCTTTTTGCTAACTACATA 59.346 33.333 0.00 0.00 41.84 2.29
2530 2609 6.481976 GGTTTTTGGCTTTTTGCTAACTACAT 59.518 34.615 0.00 0.00 41.84 2.29
2546 2625 7.094334 GGCTACATTATCCTATAGGTTTTTGGC 60.094 40.741 18.51 13.16 36.34 4.52
2550 2629 8.945193 TGAAGGCTACATTATCCTATAGGTTTT 58.055 33.333 18.51 7.63 36.34 2.43
2551 2630 8.506196 TGAAGGCTACATTATCCTATAGGTTT 57.494 34.615 18.51 9.99 36.34 3.27
2552 2631 8.686739 ATGAAGGCTACATTATCCTATAGGTT 57.313 34.615 18.51 12.81 36.34 3.50
2553 2632 8.543774 CAATGAAGGCTACATTATCCTATAGGT 58.456 37.037 18.51 8.64 36.40 3.08
2554 2633 8.543774 ACAATGAAGGCTACATTATCCTATAGG 58.456 37.037 13.07 13.07 36.40 2.57
2555 2634 9.950496 AACAATGAAGGCTACATTATCCTATAG 57.050 33.333 0.00 0.00 36.40 1.31
2556 2635 9.944376 GAACAATGAAGGCTACATTATCCTATA 57.056 33.333 0.00 0.00 36.40 1.31
2557 2636 8.664079 AGAACAATGAAGGCTACATTATCCTAT 58.336 33.333 0.00 0.00 36.40 2.57
2575 2654 8.773645 TCAGTTTCAAGTGTATGTAGAACAATG 58.226 33.333 0.00 0.00 0.00 2.82
2599 2678 3.696051 GAGCACCAGCAATCCTTTATTCA 59.304 43.478 0.00 0.00 45.49 2.57
2604 2683 2.097825 GATGAGCACCAGCAATCCTTT 58.902 47.619 0.00 0.00 45.49 3.11
2619 2698 4.428294 TTTCCTAGCCAATGGAGATGAG 57.572 45.455 2.05 0.00 33.46 2.90
2621 2700 4.272489 TGTTTTCCTAGCCAATGGAGATG 58.728 43.478 2.05 0.00 33.46 2.90
2629 2708 6.303839 ACTGAATACTTGTTTTCCTAGCCAA 58.696 36.000 2.50 0.00 0.00 4.52
2677 2756 5.885230 GATGACATTTCCTGTGACATCAA 57.115 39.130 11.63 0.00 43.41 2.57
2689 2768 4.832248 TGGGTAGAGTGTGATGACATTTC 58.168 43.478 0.00 0.00 33.63 2.17
2772 2851 9.771534 TGAAAGGTTTTCTGAAAAAGAGAAAAA 57.228 25.926 16.47 0.00 46.08 1.94
2773 2852 9.942850 ATGAAAGGTTTTCTGAAAAAGAGAAAA 57.057 25.926 16.47 0.00 43.76 2.29
2810 2892 4.433615 CTTCGACATACCTGCAAGTGTAT 58.566 43.478 0.00 0.00 32.78 2.29
2843 2925 5.450592 TGCTTATAGCTGATGAGACTGAG 57.549 43.478 0.00 0.00 42.97 3.35
2873 2955 2.956799 TTTGCACGCCTGCTTCCAGA 62.957 55.000 9.13 0.00 44.57 3.86
2876 2958 1.010419 CAATTTGCACGCCTGCTTCC 61.010 55.000 9.13 0.00 44.57 3.46
2974 3056 8.641541 TCTTTCTGGTCTGCTTTGATTTTAATT 58.358 29.630 0.00 0.00 0.00 1.40
2997 3079 8.391075 TCTTCGATGTAAAATCCAGTTTTCTT 57.609 30.769 0.00 0.00 40.40 2.52
2999 3081 8.290325 ACTTCTTCGATGTAAAATCCAGTTTTC 58.710 33.333 0.00 0.00 40.40 2.29
3004 3086 6.968131 TGACTTCTTCGATGTAAAATCCAG 57.032 37.500 0.00 0.00 0.00 3.86
3005 3087 7.921786 AATGACTTCTTCGATGTAAAATCCA 57.078 32.000 0.00 0.00 0.00 3.41
3006 3088 9.704098 GTTAATGACTTCTTCGATGTAAAATCC 57.296 33.333 0.00 0.00 0.00 3.01
3041 3125 8.652810 ATTGCTCTCACAATTAAATTTATGCC 57.347 30.769 0.00 0.00 36.91 4.40
3077 3161 0.944386 GCAAGTGAGGCAAGAAACGA 59.056 50.000 0.00 0.00 0.00 3.85
3099 3183 5.971763 TGTGAAACCTATGCAAAAACACTT 58.028 33.333 0.00 0.00 34.36 3.16
3103 3187 7.995463 TTACTTGTGAAACCTATGCAAAAAC 57.005 32.000 0.00 0.00 34.36 2.43
3120 3208 6.590292 CAGTAGTTTCATCGACCATTACTTGT 59.410 38.462 0.00 0.00 0.00 3.16
3140 3228 1.614317 CCCCTTGCACCTTTCCAGTAG 60.614 57.143 0.00 0.00 0.00 2.57
3190 3278 4.732285 AAGAAATGAACTACACAGTGCG 57.268 40.909 0.00 0.00 32.17 5.34
3214 3302 4.818546 AGATTCGCAATCCTTCAATAGGTG 59.181 41.667 5.57 0.00 45.03 4.00
3219 3307 4.818546 CCTACAGATTCGCAATCCTTCAAT 59.181 41.667 5.57 0.00 38.71 2.57
3231 3319 2.159517 GCCAAAGCAACCTACAGATTCG 60.160 50.000 0.00 0.00 39.53 3.34
3340 3429 7.769044 GGTAGAGCTAATAAATCTTCACACCAA 59.231 37.037 0.00 0.00 0.00 3.67
3365 3454 9.415544 GATATTTTCTAATTATGCCTGCAAAGG 57.584 33.333 0.00 0.00 0.00 3.11
3366 3455 9.415544 GGATATTTTCTAATTATGCCTGCAAAG 57.584 33.333 0.00 0.00 0.00 2.77
3414 3503 1.109323 AGGCACAAGGTCCTGCAAAC 61.109 55.000 4.16 0.00 34.90 2.93
3545 3635 7.751047 TGCGTAGACAGATATTTGTAAGAAC 57.249 36.000 0.00 0.00 0.00 3.01
3561 3651 7.249147 AGGTTATCATCGTATATTGCGTAGAC 58.751 38.462 0.00 0.00 0.00 2.59
3566 3656 6.706055 ACAAGGTTATCATCGTATATTGCG 57.294 37.500 0.00 0.00 0.00 4.85
3567 3657 8.083462 TGAACAAGGTTATCATCGTATATTGC 57.917 34.615 0.00 0.00 0.00 3.56
3691 3851 3.904136 CTGAAAGTCAATGTGGACCAC 57.096 47.619 18.28 18.28 38.59 4.16
3823 3986 2.437895 GCTCCGGGCCACCTTTAC 60.438 66.667 4.39 0.00 34.27 2.01
3891 4058 8.220755 TGATAAATATGTGCCAAAGTAGGAAC 57.779 34.615 0.00 0.00 37.75 3.62
3925 4094 6.763135 GTCCACAGATATGCAGAAGAACAATA 59.237 38.462 0.00 0.00 0.00 1.90
3964 4133 6.260050 GGACAAAGATAACAAACAGTGTCTCA 59.740 38.462 0.00 0.00 40.60 3.27
4132 4304 8.324110 GAGGTACTAGCAATAACATGCACTTCA 61.324 40.741 1.82 0.00 44.98 3.02
4138 4310 4.752101 CCTGAGGTACTAGCAATAACATGC 59.248 45.833 0.00 0.00 43.43 4.06
4139 4311 6.161855 TCCTGAGGTACTAGCAATAACATG 57.838 41.667 0.00 0.00 41.55 3.21
4184 4356 6.430308 CGGACATCTTATGACTACTTAGCCTA 59.570 42.308 0.00 0.00 0.00 3.93
4193 4365 5.163550 CCACAACTCGGACATCTTATGACTA 60.164 44.000 0.00 0.00 0.00 2.59
4253 4426 5.579511 CACAAAAGAATTGATTGGCCAGATC 59.420 40.000 5.11 12.76 0.00 2.75
4261 4434 6.429624 TCGTCTCACACAAAAGAATTGATTG 58.570 36.000 0.00 0.00 0.00 2.67
4296 4469 4.333926 AGTCTGAAAAAGTGACTGCTGAAC 59.666 41.667 0.00 0.00 39.29 3.18
4324 4497 7.915293 AGTTCCATATTGAAATGTAACACGA 57.085 32.000 0.00 0.00 30.45 4.35
4332 4505 9.643693 AGCAAGTAAAAGTTCCATATTGAAATG 57.356 29.630 0.00 0.00 0.00 2.32
4335 4508 8.635765 AGAGCAAGTAAAAGTTCCATATTGAA 57.364 30.769 0.00 0.00 0.00 2.69
4483 4692 3.767902 TGGGGAAGCAAAAGAAAATGG 57.232 42.857 0.00 0.00 0.00 3.16
4547 4757 6.053650 AGTGTACACAGAAAAGGTTCCTTAC 58.946 40.000 27.06 3.16 33.92 2.34
4586 4823 6.445357 AAATGACCTTGAACACGTTAACTT 57.555 33.333 3.71 0.00 0.00 2.66
4611 4848 7.502226 TGGGAGATCACAACATTATAAACATCC 59.498 37.037 0.00 0.00 0.00 3.51
4728 4966 2.335316 AGGGCGTGTACTGAACAAAA 57.665 45.000 0.00 0.00 40.63 2.44
4743 4981 2.427506 CCTTCTGACAGTTTGTAGGGC 58.572 52.381 1.59 0.00 0.00 5.19
4823 5061 5.283717 GTGCAAAGATTAAACATACAGTGCG 59.716 40.000 0.00 0.00 0.00 5.34
4966 5207 5.541484 AGCTGGACCTGAATTCAGAAAAATT 59.459 36.000 32.49 12.29 46.59 1.82
4980 5221 1.198713 ATGGTCAGTAGCTGGACCTG 58.801 55.000 25.13 13.95 34.85 4.00
4988 5229 4.458989 TCAAAATGGTCAATGGTCAGTAGC 59.541 41.667 0.00 0.00 0.00 3.58
4993 5234 4.155826 GTCGATCAAAATGGTCAATGGTCA 59.844 41.667 0.00 0.00 0.00 4.02
5154 5404 4.280819 ACAATACATGGAACCAAGGGATG 58.719 43.478 0.00 0.00 0.00 3.51
5165 5415 6.714810 ACAGCTTACAAAAGACAATACATGGA 59.285 34.615 0.00 0.00 34.37 3.41
5167 5417 6.306356 GCACAGCTTACAAAAGACAATACATG 59.694 38.462 0.00 0.00 34.37 3.21
5208 5462 4.499037 AGAAGGAACAATACAAAACGGC 57.501 40.909 0.00 0.00 0.00 5.68
5264 5519 3.084039 GCCACCTGAGAAATGTGAATCA 58.916 45.455 0.00 0.00 31.66 2.57
5355 5610 6.403527 GCACAACTTAATATGCATGTGACTCA 60.404 38.462 15.12 0.00 40.32 3.41
5397 5652 1.328279 GGAAGGGTCAAAGGTTGTGG 58.672 55.000 0.00 0.00 0.00 4.17
5457 5712 2.226330 TGTATGGTGCAAAGCGAAACT 58.774 42.857 0.00 0.00 0.00 2.66
5644 5902 2.618709 GCGCTTGAAAATGCTACCCTAT 59.381 45.455 0.00 0.00 0.00 2.57
5678 5940 0.179171 CTAGACTACACACGTGCCGG 60.179 60.000 17.22 8.25 0.00 6.13
5680 5942 3.376234 TGATACTAGACTACACACGTGCC 59.624 47.826 17.22 0.00 0.00 5.01
5685 5947 6.750501 TCGCATTTTGATACTAGACTACACAC 59.249 38.462 0.00 0.00 0.00 3.82
5686 5948 6.859017 TCGCATTTTGATACTAGACTACACA 58.141 36.000 0.00 0.00 0.00 3.72
5691 5953 5.978814 AGGTTCGCATTTTGATACTAGACT 58.021 37.500 0.00 0.00 0.00 3.24
5692 5954 6.092259 ACAAGGTTCGCATTTTGATACTAGAC 59.908 38.462 0.00 0.00 0.00 2.59
5693 5955 6.170506 ACAAGGTTCGCATTTTGATACTAGA 58.829 36.000 0.00 0.00 0.00 2.43
5694 5956 6.092122 TGACAAGGTTCGCATTTTGATACTAG 59.908 38.462 0.00 0.00 0.00 2.57
5696 5958 4.759693 TGACAAGGTTCGCATTTTGATACT 59.240 37.500 0.00 0.00 0.00 2.12
5697 5959 5.041951 TGACAAGGTTCGCATTTTGATAC 57.958 39.130 0.00 0.00 0.00 2.24
5698 5960 5.895636 ATGACAAGGTTCGCATTTTGATA 57.104 34.783 0.00 0.00 0.00 2.15
5699 5961 4.789012 ATGACAAGGTTCGCATTTTGAT 57.211 36.364 0.00 0.00 0.00 2.57
5701 5963 4.858692 CCTAATGACAAGGTTCGCATTTTG 59.141 41.667 0.00 0.00 33.45 2.44
5702 5964 4.618227 GCCTAATGACAAGGTTCGCATTTT 60.618 41.667 0.00 0.00 36.43 1.82
5719 5985 7.821134 AATTATCTCTACCAGATGGCCTAAT 57.179 36.000 3.32 0.00 42.37 1.73
5723 5989 6.064717 ACAAAATTATCTCTACCAGATGGCC 58.935 40.000 0.00 0.00 42.37 5.36
5739 6005 5.363979 TGCAAGTACGCATGACAAAATTA 57.636 34.783 0.00 0.00 36.86 1.40
5740 6006 4.235939 TGCAAGTACGCATGACAAAATT 57.764 36.364 0.00 0.00 36.86 1.82
5753 6019 6.317140 TCTCATCCTTTCAATCATGCAAGTAC 59.683 38.462 0.00 0.00 29.06 2.73
5759 6025 4.495349 CGTGTCTCATCCTTTCAATCATGC 60.495 45.833 0.00 0.00 0.00 4.06
5766 6032 3.615110 GCTTCTCGTGTCTCATCCTTTCA 60.615 47.826 0.00 0.00 0.00 2.69
5767 6033 2.926838 GCTTCTCGTGTCTCATCCTTTC 59.073 50.000 0.00 0.00 0.00 2.62
5771 6037 2.593346 ATGCTTCTCGTGTCTCATCC 57.407 50.000 0.00 0.00 0.00 3.51
5781 6047 6.237490 GCAATTCATTCAGAAAATGCTTCTCG 60.237 38.462 10.03 0.00 43.85 4.04
5806 6073 3.490419 GCCAAAATGAGAATAGCTGCCAG 60.490 47.826 0.00 0.00 0.00 4.85
5808 6075 2.692041 AGCCAAAATGAGAATAGCTGCC 59.308 45.455 0.00 0.00 0.00 4.85
5815 6082 5.762218 CGATAAGAGGAGCCAAAATGAGAAT 59.238 40.000 0.00 0.00 0.00 2.40
5831 6098 3.244249 CCCTTTTAGCCCTCCGATAAGAG 60.244 52.174 0.00 0.00 0.00 2.85
5847 6114 8.470002 GTGCATAACTGAGAATTAATCCCTTTT 58.530 33.333 0.00 0.00 0.00 2.27
5892 6159 7.391620 TCACCCAAAAACTACCTACTTCATAG 58.608 38.462 0.00 0.00 0.00 2.23
5903 6170 4.316645 GAGAGACCTCACCCAAAAACTAC 58.683 47.826 0.00 0.00 39.24 2.73
5905 6172 2.224305 CGAGAGACCTCACCCAAAAACT 60.224 50.000 0.00 0.00 39.39 2.66
5906 6173 2.143925 CGAGAGACCTCACCCAAAAAC 58.856 52.381 0.00 0.00 39.39 2.43
5908 6175 1.712056 TCGAGAGACCTCACCCAAAA 58.288 50.000 0.00 0.00 39.39 2.44
5909 6176 1.712056 TTCGAGAGACCTCACCCAAA 58.288 50.000 0.00 0.00 41.84 3.28
5910 6177 1.825474 GATTCGAGAGACCTCACCCAA 59.175 52.381 0.00 0.00 41.84 4.12
5913 6180 2.755655 TGAAGATTCGAGAGACCTCACC 59.244 50.000 0.00 0.00 41.84 4.02
5914 6181 4.442375 TTGAAGATTCGAGAGACCTCAC 57.558 45.455 0.00 0.00 41.84 3.51
5915 6182 5.667539 AATTGAAGATTCGAGAGACCTCA 57.332 39.130 0.00 0.00 41.84 3.86
5916 6183 5.293079 CCAAATTGAAGATTCGAGAGACCTC 59.707 44.000 0.00 0.00 41.84 3.85
5917 6184 5.181748 CCAAATTGAAGATTCGAGAGACCT 58.818 41.667 0.00 0.00 41.84 3.85
5918 6185 4.938226 ACCAAATTGAAGATTCGAGAGACC 59.062 41.667 0.00 0.00 41.84 3.85
5923 6190 7.907045 CACATCTAACCAAATTGAAGATTCGAG 59.093 37.037 0.00 0.00 0.00 4.04
5924 6191 7.606073 TCACATCTAACCAAATTGAAGATTCGA 59.394 33.333 0.00 0.00 0.00 3.71
5929 6196 6.434028 CCCTTCACATCTAACCAAATTGAAGA 59.566 38.462 9.46 0.00 40.51 2.87
5944 6211 4.393371 GCAAACTCTACTTCCCTTCACATC 59.607 45.833 0.00 0.00 0.00 3.06
5953 6220 8.549338 AACTATACTTTGCAAACTCTACTTCC 57.451 34.615 8.05 0.00 0.00 3.46
5985 6252 3.743521 TGAGCATAGCACTCACAAGTTT 58.256 40.909 0.00 0.00 39.21 2.66
5989 6256 3.055602 ACAGATGAGCATAGCACTCACAA 60.056 43.478 0.00 0.00 46.38 3.33
6014 6281 6.183360 ACAAATTACTGGATGGCAGTTCAAAA 60.183 34.615 0.00 0.00 34.38 2.44
6036 6303 2.135139 CAGACAAGCTAAGCGACACAA 58.865 47.619 0.00 0.00 0.00 3.33
6067 6334 7.121759 ACTCTATACAAGCTACCTACGTTGAAA 59.878 37.037 0.00 0.00 0.00 2.69
6069 6336 6.118170 ACTCTATACAAGCTACCTACGTTGA 58.882 40.000 0.00 0.00 0.00 3.18
6071 6338 8.511604 TTTACTCTATACAAGCTACCTACGTT 57.488 34.615 0.00 0.00 0.00 3.99
6074 6341 8.688747 TCCTTTACTCTATACAAGCTACCTAC 57.311 38.462 0.00 0.00 0.00 3.18
6081 6348 7.988028 ACTGGAATTCCTTTACTCTATACAAGC 59.012 37.037 24.73 0.00 36.82 4.01
6097 6364 2.191128 AGCAGTGACACTGGAATTCC 57.809 50.000 31.47 18.17 46.01 3.01
6132 6399 3.596046 ACAACCTGGGATATTGGAGGAAA 59.404 43.478 0.00 0.00 0.00 3.13
6151 6418 5.408880 TGTGAAATCAGTATACCGGACAA 57.591 39.130 9.46 0.00 0.00 3.18
6155 6422 6.677781 ACAAATGTGAAATCAGTATACCGG 57.322 37.500 0.00 0.00 0.00 5.28
6173 6440 9.442047 CCTTACTAAGACTTGAGATTCACAAAT 57.558 33.333 0.00 0.00 0.00 2.32
6200 6467 8.390921 CCTGACATATAAATACCCCCATTTAGT 58.609 37.037 0.00 0.00 34.68 2.24
6203 6470 7.415004 TCCTGACATATAAATACCCCCATTT 57.585 36.000 0.00 0.00 32.91 2.32
6223 6490 1.550524 TCGATCCTTGTCAGGTTCCTG 59.449 52.381 12.20 12.20 41.69 3.86
6224 6491 1.938585 TCGATCCTTGTCAGGTTCCT 58.061 50.000 0.00 0.00 41.69 3.36
6225 6492 2.347731 GTTCGATCCTTGTCAGGTTCC 58.652 52.381 0.00 0.00 41.69 3.62
6226 6493 1.993370 CGTTCGATCCTTGTCAGGTTC 59.007 52.381 0.00 0.00 41.69 3.62
6227 6494 1.616865 TCGTTCGATCCTTGTCAGGTT 59.383 47.619 0.00 0.00 41.69 3.50
6228 6495 1.254026 TCGTTCGATCCTTGTCAGGT 58.746 50.000 0.00 0.00 41.69 4.00
6229 6496 1.993370 GTTCGTTCGATCCTTGTCAGG 59.007 52.381 0.00 0.00 42.50 3.86
6230 6497 2.947852 AGTTCGTTCGATCCTTGTCAG 58.052 47.619 0.00 0.00 0.00 3.51
6231 6498 4.508461 TTAGTTCGTTCGATCCTTGTCA 57.492 40.909 0.00 0.00 0.00 3.58
6232 6499 4.682860 TGTTTAGTTCGTTCGATCCTTGTC 59.317 41.667 0.00 0.00 0.00 3.18
6233 6500 4.446719 GTGTTTAGTTCGTTCGATCCTTGT 59.553 41.667 0.00 0.00 0.00 3.16
6235 6502 4.879598 AGTGTTTAGTTCGTTCGATCCTT 58.120 39.130 0.00 0.00 0.00 3.36
6237 6504 4.232221 TGAGTGTTTAGTTCGTTCGATCC 58.768 43.478 0.00 0.00 0.00 3.36
6240 6507 4.675510 AGTTGAGTGTTTAGTTCGTTCGA 58.324 39.130 0.00 0.00 0.00 3.71
6242 6509 6.297353 GCATAGTTGAGTGTTTAGTTCGTTC 58.703 40.000 0.00 0.00 0.00 3.95
6243 6510 5.107607 CGCATAGTTGAGTGTTTAGTTCGTT 60.108 40.000 0.00 0.00 0.00 3.85
6244 6511 4.384846 CGCATAGTTGAGTGTTTAGTTCGT 59.615 41.667 0.00 0.00 0.00 3.85
6245 6512 4.619760 TCGCATAGTTGAGTGTTTAGTTCG 59.380 41.667 0.00 0.00 0.00 3.95
6246 6513 6.462073 TTCGCATAGTTGAGTGTTTAGTTC 57.538 37.500 0.00 0.00 0.00 3.01
6248 6515 6.649141 TGAATTCGCATAGTTGAGTGTTTAGT 59.351 34.615 0.04 0.00 0.00 2.24
6250 6517 6.871492 TCTGAATTCGCATAGTTGAGTGTTTA 59.129 34.615 0.04 0.00 0.00 2.01
6251 6518 5.700832 TCTGAATTCGCATAGTTGAGTGTTT 59.299 36.000 0.04 0.00 0.00 2.83
6252 6519 5.237815 TCTGAATTCGCATAGTTGAGTGTT 58.762 37.500 0.04 0.00 0.00 3.32
6253 6520 4.820897 TCTGAATTCGCATAGTTGAGTGT 58.179 39.130 0.04 0.00 0.00 3.55
6254 6521 4.269603 CCTCTGAATTCGCATAGTTGAGTG 59.730 45.833 0.04 0.00 0.00 3.51
6255 6522 4.081420 ACCTCTGAATTCGCATAGTTGAGT 60.081 41.667 0.04 0.00 0.00 3.41
6257 6524 4.081697 TCACCTCTGAATTCGCATAGTTGA 60.082 41.667 0.04 0.00 0.00 3.18
6258 6525 4.183865 TCACCTCTGAATTCGCATAGTTG 58.816 43.478 0.04 0.00 0.00 3.16
6259 6526 4.471904 TCACCTCTGAATTCGCATAGTT 57.528 40.909 0.04 0.00 0.00 2.24
6260 6527 4.471904 TTCACCTCTGAATTCGCATAGT 57.528 40.909 0.04 0.00 31.00 2.12
6270 6537 7.094205 GCAAATTCTCCTAAATTCACCTCTGAA 60.094 37.037 0.00 0.00 40.77 3.02
6271 6538 6.375455 GCAAATTCTCCTAAATTCACCTCTGA 59.625 38.462 0.00 0.00 0.00 3.27
6272 6539 6.558909 GCAAATTCTCCTAAATTCACCTCTG 58.441 40.000 0.00 0.00 0.00 3.35
6273 6540 5.355350 CGCAAATTCTCCTAAATTCACCTCT 59.645 40.000 0.00 0.00 0.00 3.69
6274 6541 5.573146 CGCAAATTCTCCTAAATTCACCTC 58.427 41.667 0.00 0.00 0.00 3.85
6275 6542 4.142381 GCGCAAATTCTCCTAAATTCACCT 60.142 41.667 0.30 0.00 0.00 4.00
6276 6543 4.105486 GCGCAAATTCTCCTAAATTCACC 58.895 43.478 0.30 0.00 0.00 4.02
6277 6544 4.986622 AGCGCAAATTCTCCTAAATTCAC 58.013 39.130 11.47 0.00 0.00 3.18
6279 6546 5.278022 CCCTAGCGCAAATTCTCCTAAATTC 60.278 44.000 11.47 0.00 0.00 2.17
6280 6547 4.580580 CCCTAGCGCAAATTCTCCTAAATT 59.419 41.667 11.47 0.00 0.00 1.82
6281 6548 4.137543 CCCTAGCGCAAATTCTCCTAAAT 58.862 43.478 11.47 0.00 0.00 1.40
6284 6551 2.116238 ACCCTAGCGCAAATTCTCCTA 58.884 47.619 11.47 0.00 0.00 2.94
6285 6552 0.912486 ACCCTAGCGCAAATTCTCCT 59.088 50.000 11.47 0.00 0.00 3.69
6287 6554 2.488153 ACAAACCCTAGCGCAAATTCTC 59.512 45.455 11.47 0.00 0.00 2.87
6288 6555 2.514803 ACAAACCCTAGCGCAAATTCT 58.485 42.857 11.47 0.00 0.00 2.40
6289 6556 4.632538 ATACAAACCCTAGCGCAAATTC 57.367 40.909 11.47 0.00 0.00 2.17
6290 6557 4.743493 CAATACAAACCCTAGCGCAAATT 58.257 39.130 11.47 0.00 0.00 1.82
6291 6558 3.428862 GCAATACAAACCCTAGCGCAAAT 60.429 43.478 11.47 0.00 0.00 2.32
6292 6559 2.094957 GCAATACAAACCCTAGCGCAAA 60.095 45.455 11.47 0.00 0.00 3.68
6293 6560 1.470890 GCAATACAAACCCTAGCGCAA 59.529 47.619 11.47 0.00 0.00 4.85
6294 6561 1.091537 GCAATACAAACCCTAGCGCA 58.908 50.000 11.47 0.00 0.00 6.09
6295 6562 1.064060 CTGCAATACAAACCCTAGCGC 59.936 52.381 0.00 0.00 0.00 5.92
6296 6563 1.064060 GCTGCAATACAAACCCTAGCG 59.936 52.381 0.00 0.00 0.00 4.26
6298 6565 4.380867 CCTTTGCTGCAATACAAACCCTAG 60.381 45.833 16.77 6.18 32.60 3.02
6299 6566 3.509575 CCTTTGCTGCAATACAAACCCTA 59.490 43.478 16.77 0.00 32.60 3.53
6301 6568 2.612721 CCCTTTGCTGCAATACAAACCC 60.613 50.000 16.77 0.00 32.60 4.11
6302 6569 2.612721 CCCCTTTGCTGCAATACAAACC 60.613 50.000 16.77 0.00 32.60 3.27
6303 6570 2.298729 TCCCCTTTGCTGCAATACAAAC 59.701 45.455 16.77 0.00 32.60 2.93
6304 6571 2.603021 TCCCCTTTGCTGCAATACAAA 58.397 42.857 16.77 0.00 34.73 2.83
6305 6572 2.300956 TCCCCTTTGCTGCAATACAA 57.699 45.000 16.77 0.00 0.00 2.41
6306 6573 2.300956 TTCCCCTTTGCTGCAATACA 57.699 45.000 16.77 0.02 0.00 2.29
6307 6574 2.562738 ACTTTCCCCTTTGCTGCAATAC 59.437 45.455 16.77 0.00 0.00 1.89
6309 6576 1.720781 ACTTTCCCCTTTGCTGCAAT 58.279 45.000 16.77 0.00 0.00 3.56
6310 6577 2.238521 CTACTTTCCCCTTTGCTGCAA 58.761 47.619 11.69 11.69 0.00 4.08
6311 6578 1.909700 CTACTTTCCCCTTTGCTGCA 58.090 50.000 0.00 0.00 0.00 4.41
6312 6579 0.528017 GCTACTTTCCCCTTTGCTGC 59.472 55.000 0.00 0.00 0.00 5.25
6313 6580 1.909700 TGCTACTTTCCCCTTTGCTG 58.090 50.000 0.00 0.00 0.00 4.41
6314 6581 2.519013 CTTGCTACTTTCCCCTTTGCT 58.481 47.619 0.00 0.00 0.00 3.91
6315 6582 1.067565 GCTTGCTACTTTCCCCTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
6316 6583 2.029918 GTGCTTGCTACTTTCCCCTTTG 60.030 50.000 0.00 0.00 0.00 2.77
6319 6586 0.321653 CGTGCTTGCTACTTTCCCCT 60.322 55.000 0.00 0.00 0.00 4.79
6321 6588 1.502190 GCGTGCTTGCTACTTTCCC 59.498 57.895 0.00 0.00 0.00 3.97
6322 6589 1.234615 TGGCGTGCTTGCTACTTTCC 61.235 55.000 0.92 0.00 34.52 3.13
6323 6590 0.110192 GTGGCGTGCTTGCTACTTTC 60.110 55.000 9.36 0.00 42.41 2.62
6324 6591 0.817634 TGTGGCGTGCTTGCTACTTT 60.818 50.000 15.66 0.00 45.49 2.66
6325 6592 1.227823 TGTGGCGTGCTTGCTACTT 60.228 52.632 15.66 0.00 45.49 2.24
6327 6594 2.680913 CCTGTGGCGTGCTTGCTAC 61.681 63.158 9.63 9.63 45.49 3.58
6328 6595 2.358615 CCTGTGGCGTGCTTGCTA 60.359 61.111 0.92 0.00 34.52 3.49
6339 6606 1.906105 TAAACCCTAGCCGCCTGTGG 61.906 60.000 0.00 0.00 0.00 4.17
6341 6608 1.415289 GTATAAACCCTAGCCGCCTGT 59.585 52.381 0.00 0.00 0.00 4.00
6342 6609 1.270678 GGTATAAACCCTAGCCGCCTG 60.271 57.143 0.00 0.00 40.21 4.85
6344 6611 3.620061 GGTATAAACCCTAGCCGCC 57.380 57.895 0.00 0.00 40.21 6.13
6356 6623 9.515226 GGCATGAATTATTCTAACTGGGTATAA 57.485 33.333 6.50 0.00 0.00 0.98
6357 6624 8.107095 GGGCATGAATTATTCTAACTGGGTATA 58.893 37.037 6.50 0.00 0.00 1.47
6359 6626 6.126332 TGGGCATGAATTATTCTAACTGGGTA 60.126 38.462 6.50 0.00 0.00 3.69
6362 6629 6.713762 TTGGGCATGAATTATTCTAACTGG 57.286 37.500 6.50 0.00 0.00 4.00
6363 6630 8.253113 AGTTTTGGGCATGAATTATTCTAACTG 58.747 33.333 6.50 0.94 0.00 3.16
6364 6631 8.253113 CAGTTTTGGGCATGAATTATTCTAACT 58.747 33.333 6.50 0.00 0.00 2.24
6365 6632 8.250332 TCAGTTTTGGGCATGAATTATTCTAAC 58.750 33.333 6.50 0.00 0.00 2.34
6366 6633 8.359875 TCAGTTTTGGGCATGAATTATTCTAA 57.640 30.769 6.50 0.00 0.00 2.10
6367 6634 7.833682 TCTCAGTTTTGGGCATGAATTATTCTA 59.166 33.333 6.50 0.00 0.00 2.10
6372 6639 4.158394 GCTCTCAGTTTTGGGCATGAATTA 59.842 41.667 0.00 0.00 0.00 1.40
6373 6640 3.056322 GCTCTCAGTTTTGGGCATGAATT 60.056 43.478 0.00 0.00 0.00 2.17
6374 6641 2.494870 GCTCTCAGTTTTGGGCATGAAT 59.505 45.455 0.00 0.00 0.00 2.57
6376 6643 1.538047 GCTCTCAGTTTTGGGCATGA 58.462 50.000 0.00 0.00 0.00 3.07
6377 6644 0.169672 CGCTCTCAGTTTTGGGCATG 59.830 55.000 0.00 0.00 0.00 4.06
6378 6645 0.036732 TCGCTCTCAGTTTTGGGCAT 59.963 50.000 0.00 0.00 0.00 4.40
6380 6647 1.301677 CCTCGCTCTCAGTTTTGGGC 61.302 60.000 0.00 0.00 0.00 5.36
6381 6648 0.674895 CCCTCGCTCTCAGTTTTGGG 60.675 60.000 0.00 0.00 0.00 4.12
6382 6649 0.674895 CCCCTCGCTCTCAGTTTTGG 60.675 60.000 0.00 0.00 0.00 3.28
6383 6650 0.035458 ACCCCTCGCTCTCAGTTTTG 59.965 55.000 0.00 0.00 0.00 2.44
6386 6653 2.286523 CCACCCCTCGCTCTCAGTT 61.287 63.158 0.00 0.00 0.00 3.16
6387 6654 2.681778 CCACCCCTCGCTCTCAGT 60.682 66.667 0.00 0.00 0.00 3.41
6388 6655 4.154347 GCCACCCCTCGCTCTCAG 62.154 72.222 0.00 0.00 0.00 3.35
6390 6657 0.539901 TATAGCCACCCCTCGCTCTC 60.540 60.000 0.00 0.00 36.53 3.20
6391 6658 0.115349 ATATAGCCACCCCTCGCTCT 59.885 55.000 0.00 0.00 36.53 4.09
6393 6660 1.619977 CCTATATAGCCACCCCTCGCT 60.620 57.143 4.04 0.00 39.17 4.93
6394 6661 0.824759 CCTATATAGCCACCCCTCGC 59.175 60.000 4.04 0.00 0.00 5.03
6396 6663 1.952621 TGCCTATATAGCCACCCCTC 58.047 55.000 4.04 0.00 0.00 4.30
6398 6665 3.521937 TGTATTGCCTATATAGCCACCCC 59.478 47.826 4.04 0.00 0.00 4.95
6399 6666 4.837093 TGTATTGCCTATATAGCCACCC 57.163 45.455 4.04 0.00 0.00 4.61
6400 6667 6.472887 TCTTTGTATTGCCTATATAGCCACC 58.527 40.000 4.04 0.00 0.00 4.61
6401 6668 7.386851 TCTCTTTGTATTGCCTATATAGCCAC 58.613 38.462 4.04 0.00 0.00 5.01
6402 6669 7.553504 TCTCTTTGTATTGCCTATATAGCCA 57.446 36.000 4.04 0.00 0.00 4.75
6403 6670 8.848474 TTTCTCTTTGTATTGCCTATATAGCC 57.152 34.615 4.04 0.00 0.00 3.93
6406 6673 9.845740 TGCTTTTCTCTTTGTATTGCCTATATA 57.154 29.630 0.00 0.00 0.00 0.86
6409 7248 6.886459 TCTGCTTTTCTCTTTGTATTGCCTAT 59.114 34.615 0.00 0.00 0.00 2.57
6421 7260 4.641989 TGCTTTCTGTTCTGCTTTTCTCTT 59.358 37.500 0.00 0.00 0.00 2.85
6423 7262 4.558538 TGCTTTCTGTTCTGCTTTTCTC 57.441 40.909 0.00 0.00 0.00 2.87
6424 7263 4.989279 TTGCTTTCTGTTCTGCTTTTCT 57.011 36.364 0.00 0.00 0.00 2.52
6426 7265 5.105063 GTCTTTGCTTTCTGTTCTGCTTTT 58.895 37.500 0.00 0.00 0.00 2.27
6428 7267 3.696051 TGTCTTTGCTTTCTGTTCTGCTT 59.304 39.130 0.00 0.00 0.00 3.91
6429 7268 3.282021 TGTCTTTGCTTTCTGTTCTGCT 58.718 40.909 0.00 0.00 0.00 4.24
6433 7272 3.313526 TGCTCTGTCTTTGCTTTCTGTTC 59.686 43.478 0.00 0.00 0.00 3.18
6434 7273 3.065925 GTGCTCTGTCTTTGCTTTCTGTT 59.934 43.478 0.00 0.00 0.00 3.16
6435 7274 2.615912 GTGCTCTGTCTTTGCTTTCTGT 59.384 45.455 0.00 0.00 0.00 3.41
6436 7275 2.615447 TGTGCTCTGTCTTTGCTTTCTG 59.385 45.455 0.00 0.00 0.00 3.02
6438 7277 3.562505 CATGTGCTCTGTCTTTGCTTTC 58.437 45.455 0.00 0.00 0.00 2.62
6439 7278 2.295349 CCATGTGCTCTGTCTTTGCTTT 59.705 45.455 0.00 0.00 0.00 3.51
6442 7281 0.109412 GCCATGTGCTCTGTCTTTGC 60.109 55.000 0.00 0.00 36.87 3.68
6444 7283 0.250467 ACGCCATGTGCTCTGTCTTT 60.250 50.000 4.92 0.00 38.05 2.52
6445 7284 0.952497 CACGCCATGTGCTCTGTCTT 60.952 55.000 4.92 0.00 42.70 3.01
6446 7285 1.375140 CACGCCATGTGCTCTGTCT 60.375 57.895 4.92 0.00 42.70 3.41
6447 7286 3.171987 CACGCCATGTGCTCTGTC 58.828 61.111 4.92 0.00 42.70 3.51
6460 7299 3.849953 GTTCATCGCCCGACACGC 61.850 66.667 0.00 0.00 0.00 5.34
6461 7300 2.431771 TGTTCATCGCCCGACACG 60.432 61.111 0.00 0.00 0.00 4.49
6462 7301 2.740714 GCTGTTCATCGCCCGACAC 61.741 63.158 0.00 0.00 0.00 3.67
6465 7304 3.754530 TCGCTGTTCATCGCCCGA 61.755 61.111 0.00 0.00 0.00 5.14
6466 7305 3.554692 GTCGCTGTTCATCGCCCG 61.555 66.667 0.00 0.00 0.00 6.13
6467 7306 2.434185 TGTCGCTGTTCATCGCCC 60.434 61.111 0.00 0.00 0.00 6.13
6468 7307 1.687494 GAGTGTCGCTGTTCATCGCC 61.687 60.000 0.00 0.00 0.00 5.54
6469 7308 1.704582 GAGTGTCGCTGTTCATCGC 59.295 57.895 0.00 0.00 0.00 4.58
6470 7309 1.406219 CCGAGTGTCGCTGTTCATCG 61.406 60.000 0.00 0.00 38.82 3.84
6471 7310 1.078759 CCCGAGTGTCGCTGTTCATC 61.079 60.000 0.00 0.00 38.82 2.92
6472 7311 1.079819 CCCGAGTGTCGCTGTTCAT 60.080 57.895 0.00 0.00 38.82 2.57
6473 7312 2.338620 CCCGAGTGTCGCTGTTCA 59.661 61.111 0.00 0.00 38.82 3.18
6474 7313 2.432628 CCCCGAGTGTCGCTGTTC 60.433 66.667 0.00 0.00 38.82 3.18
6475 7314 4.681978 GCCCCGAGTGTCGCTGTT 62.682 66.667 0.00 0.00 38.82 3.16
6480 7319 1.792118 TATCATCGCCCCGAGTGTCG 61.792 60.000 0.00 0.00 39.91 4.35
6481 7320 0.039074 CTATCATCGCCCCGAGTGTC 60.039 60.000 0.00 0.00 39.91 3.67
6482 7321 2.041976 CTATCATCGCCCCGAGTGT 58.958 57.895 0.00 0.00 39.91 3.55
6483 7322 1.373497 GCTATCATCGCCCCGAGTG 60.373 63.158 0.00 0.00 39.91 3.51
6484 7323 2.574955 GGCTATCATCGCCCCGAGT 61.575 63.158 0.00 0.00 41.73 4.18
6485 7324 2.262915 GGCTATCATCGCCCCGAG 59.737 66.667 0.00 0.00 41.73 4.63
6486 7325 3.680786 CGGCTATCATCGCCCCGA 61.681 66.667 0.00 0.00 44.73 5.14
6487 7326 3.515316 AACGGCTATCATCGCCCCG 62.515 63.158 0.00 0.00 44.73 5.73
6488 7327 1.961277 CAACGGCTATCATCGCCCC 60.961 63.158 0.00 0.00 44.73 5.80
6489 7328 1.961277 CCAACGGCTATCATCGCCC 60.961 63.158 0.00 0.00 44.73 6.13
6490 7329 0.320771 ATCCAACGGCTATCATCGCC 60.321 55.000 0.00 0.00 44.11 5.54
6491 7330 0.792640 CATCCAACGGCTATCATCGC 59.207 55.000 0.00 0.00 0.00 4.58
6492 7331 2.438868 TCATCCAACGGCTATCATCG 57.561 50.000 0.00 0.00 0.00 3.84
6493 7332 3.995199 TCTTCATCCAACGGCTATCATC 58.005 45.455 0.00 0.00 0.00 2.92
6494 7333 4.422073 TTCTTCATCCAACGGCTATCAT 57.578 40.909 0.00 0.00 0.00 2.45
6495 7334 3.904800 TTCTTCATCCAACGGCTATCA 57.095 42.857 0.00 0.00 0.00 2.15
6496 7335 4.636249 AGATTCTTCATCCAACGGCTATC 58.364 43.478 0.00 0.00 31.20 2.08
6497 7336 4.696479 AGATTCTTCATCCAACGGCTAT 57.304 40.909 0.00 0.00 31.20 2.97
6498 7337 4.499188 CGTAGATTCTTCATCCAACGGCTA 60.499 45.833 0.00 0.00 37.80 3.93
6499 7338 3.738281 CGTAGATTCTTCATCCAACGGCT 60.738 47.826 0.00 0.00 37.80 5.52
6500 7339 2.540101 CGTAGATTCTTCATCCAACGGC 59.460 50.000 0.00 0.00 37.80 5.68
6501 7340 3.797256 GTCGTAGATTCTTCATCCAACGG 59.203 47.826 0.00 0.00 40.10 4.44
6502 7341 4.500837 CAGTCGTAGATTCTTCATCCAACG 59.499 45.833 0.00 0.00 40.63 4.10
6503 7342 5.651530 TCAGTCGTAGATTCTTCATCCAAC 58.348 41.667 0.00 0.00 40.67 3.77
6504 7343 5.914898 TCAGTCGTAGATTCTTCATCCAA 57.085 39.130 0.00 0.00 40.67 3.53
6505 7344 5.594317 TCATCAGTCGTAGATTCTTCATCCA 59.406 40.000 0.00 0.00 40.67 3.41
6506 7345 5.918011 GTCATCAGTCGTAGATTCTTCATCC 59.082 44.000 0.00 0.00 40.67 3.51
6507 7346 6.499172 TGTCATCAGTCGTAGATTCTTCATC 58.501 40.000 0.00 0.00 40.67 2.92
6508 7347 6.456795 TGTCATCAGTCGTAGATTCTTCAT 57.543 37.500 0.00 0.00 40.67 2.57
6509 7348 5.897377 TGTCATCAGTCGTAGATTCTTCA 57.103 39.130 0.00 0.00 40.67 3.02
6510 7349 5.231147 GCTTGTCATCAGTCGTAGATTCTTC 59.769 44.000 0.00 0.00 40.67 2.87
6511 7350 5.105752 GCTTGTCATCAGTCGTAGATTCTT 58.894 41.667 0.00 0.00 40.67 2.52
6512 7351 4.440802 GGCTTGTCATCAGTCGTAGATTCT 60.441 45.833 0.00 0.00 40.67 2.40
6513 7352 3.799420 GGCTTGTCATCAGTCGTAGATTC 59.201 47.826 0.00 0.00 40.67 2.52
6514 7353 3.195610 TGGCTTGTCATCAGTCGTAGATT 59.804 43.478 0.00 0.00 40.67 2.40
6515 7354 2.760650 TGGCTTGTCATCAGTCGTAGAT 59.239 45.455 0.00 0.00 40.67 1.98
6516 7355 2.164422 CTGGCTTGTCATCAGTCGTAGA 59.836 50.000 0.00 0.00 0.00 2.59
6517 7356 2.094494 ACTGGCTTGTCATCAGTCGTAG 60.094 50.000 0.00 0.00 37.16 3.51
6518 7357 1.893137 ACTGGCTTGTCATCAGTCGTA 59.107 47.619 0.00 0.00 37.16 3.43
6519 7358 0.681733 ACTGGCTTGTCATCAGTCGT 59.318 50.000 0.00 0.00 37.16 4.34
6520 7359 1.073964 CACTGGCTTGTCATCAGTCG 58.926 55.000 0.00 0.00 39.43 4.18
6521 7360 1.446907 CCACTGGCTTGTCATCAGTC 58.553 55.000 0.00 0.00 39.43 3.51
6522 7361 0.607489 GCCACTGGCTTGTCATCAGT 60.607 55.000 13.28 0.00 46.69 3.41
6523 7362 2.177950 GCCACTGGCTTGTCATCAG 58.822 57.895 13.28 0.00 46.69 2.90
6524 7363 4.402851 GCCACTGGCTTGTCATCA 57.597 55.556 13.28 0.00 46.69 3.07
6533 7372 1.702491 GATAACGGTTCGCCACTGGC 61.702 60.000 10.35 10.35 46.75 4.85
6534 7373 0.108329 AGATAACGGTTCGCCACTGG 60.108 55.000 0.00 0.00 35.83 4.00
6535 7374 1.659098 GAAGATAACGGTTCGCCACTG 59.341 52.381 0.00 0.00 37.00 3.66
6536 7375 1.274167 TGAAGATAACGGTTCGCCACT 59.726 47.619 0.00 0.00 37.00 4.00
6537 7376 1.392510 GTGAAGATAACGGTTCGCCAC 59.607 52.381 0.00 0.00 37.00 5.01
6538 7377 1.274167 AGTGAAGATAACGGTTCGCCA 59.726 47.619 0.00 0.00 34.35 5.69
6539 7378 1.659098 CAGTGAAGATAACGGTTCGCC 59.341 52.381 0.00 0.00 34.35 5.54
6540 7379 1.659098 CCAGTGAAGATAACGGTTCGC 59.341 52.381 0.00 0.00 34.09 4.70
6541 7380 3.119602 TCTCCAGTGAAGATAACGGTTCG 60.120 47.826 0.00 0.00 0.00 3.95
6542 7381 4.425520 CTCTCCAGTGAAGATAACGGTTC 58.574 47.826 0.00 0.00 0.00 3.62
6543 7382 3.368531 GCTCTCCAGTGAAGATAACGGTT 60.369 47.826 0.00 0.00 0.00 4.44
6544 7383 2.166664 GCTCTCCAGTGAAGATAACGGT 59.833 50.000 0.00 0.00 0.00 4.83
6545 7384 2.482142 GGCTCTCCAGTGAAGATAACGG 60.482 54.545 0.00 0.00 0.00 4.44
6546 7385 2.166459 TGGCTCTCCAGTGAAGATAACG 59.834 50.000 0.00 0.00 37.47 3.18
6547 7386 3.196685 AGTGGCTCTCCAGTGAAGATAAC 59.803 47.826 0.00 0.00 44.21 1.89
6548 7387 3.445008 AGTGGCTCTCCAGTGAAGATAA 58.555 45.455 0.00 0.00 44.21 1.75
6549 7388 3.107402 AGTGGCTCTCCAGTGAAGATA 57.893 47.619 0.00 0.00 44.21 1.98
6556 7395 1.270414 CCATCCAGTGGCTCTCCAGT 61.270 60.000 3.51 0.00 46.80 4.00
6558 7397 3.731547 CCATCCAGTGGCTCTCCA 58.268 61.111 3.51 0.00 42.12 3.86
6569 7408 1.037579 AGTCGTCGATCTGCCATCCA 61.038 55.000 0.00 0.00 0.00 3.41
6570 7409 0.596083 CAGTCGTCGATCTGCCATCC 60.596 60.000 0.00 0.00 0.00 3.51
6571 7410 0.382158 TCAGTCGTCGATCTGCCATC 59.618 55.000 15.62 0.00 0.00 3.51
6573 7412 1.506718 GTCAGTCGTCGATCTGCCA 59.493 57.895 15.62 2.66 0.00 4.92
6574 7413 1.226717 GGTCAGTCGTCGATCTGCC 60.227 63.158 15.62 15.36 0.00 4.85
6575 7414 0.171455 AAGGTCAGTCGTCGATCTGC 59.829 55.000 15.62 11.96 0.00 4.26
6576 7415 1.901538 CAAGGTCAGTCGTCGATCTG 58.098 55.000 14.75 14.75 0.00 2.90
6577 7416 0.171455 GCAAGGTCAGTCGTCGATCT 59.829 55.000 0.00 0.00 0.00 2.75
6578 7417 0.171455 AGCAAGGTCAGTCGTCGATC 59.829 55.000 0.00 0.00 0.00 3.69
6579 7418 0.603569 AAGCAAGGTCAGTCGTCGAT 59.396 50.000 0.00 0.00 0.00 3.59
6580 7419 0.039437 GAAGCAAGGTCAGTCGTCGA 60.039 55.000 0.00 0.00 0.00 4.20
6581 7420 1.009389 GGAAGCAAGGTCAGTCGTCG 61.009 60.000 0.00 0.00 0.00 5.12
6583 7422 0.468226 TTGGAAGCAAGGTCAGTCGT 59.532 50.000 0.00 0.00 0.00 4.34
6584 7423 0.868406 GTTGGAAGCAAGGTCAGTCG 59.132 55.000 0.00 0.00 0.00 4.18
6585 7424 1.604278 GTGTTGGAAGCAAGGTCAGTC 59.396 52.381 0.00 0.00 0.00 3.51
6586 7425 1.680338 GTGTTGGAAGCAAGGTCAGT 58.320 50.000 0.00 0.00 0.00 3.41
6587 7426 0.588252 CGTGTTGGAAGCAAGGTCAG 59.412 55.000 0.00 0.00 0.00 3.51
6588 7427 1.444119 GCGTGTTGGAAGCAAGGTCA 61.444 55.000 0.00 0.00 0.00 4.02
6590 7429 1.453015 TGCGTGTTGGAAGCAAGGT 60.453 52.632 0.00 0.00 35.98 3.50
6591 7430 3.431055 TGCGTGTTGGAAGCAAGG 58.569 55.556 0.00 0.00 35.98 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.