Multiple sequence alignment - TraesCS5A01G014800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G014800 chr5A 100.000 5385 0 0 1 5385 10202028 10196644 0.000000e+00 9945.0
1 TraesCS5A01G014800 chr5D 90.913 2146 98 46 63 2169 13318978 13316891 0.000000e+00 2793.0
2 TraesCS5A01G014800 chr5D 83.113 1285 134 54 4138 5382 13314181 13312940 0.000000e+00 1094.0
3 TraesCS5A01G014800 chr5D 83.045 578 78 14 3056 3626 13315969 13315405 1.730000e-139 507.0
4 TraesCS5A01G014800 chr5D 86.239 109 12 3 1527 1632 539675507 539675399 1.230000e-21 115.0
5 TraesCS5A01G014800 chr5D 80.198 101 16 3 2873 2972 525268527 525268430 7.480000e-09 73.1
6 TraesCS5A01G014800 chr5D 92.857 42 3 0 24 65 118010589 118010630 1.620000e-05 62.1
7 TraesCS5A01G014800 chr5B 94.068 1770 62 24 3644 5383 13082955 13081199 0.000000e+00 2647.0
8 TraesCS5A01G014800 chr5B 88.294 1794 102 51 730 2462 13086035 13084289 0.000000e+00 2050.0
9 TraesCS5A01G014800 chr5B 87.996 933 80 18 2723 3628 13083874 13082947 0.000000e+00 1074.0
10 TraesCS5A01G014800 chr5B 86.891 267 8 6 482 744 13086294 13086051 1.910000e-69 274.0
11 TraesCS5A01G014800 chr5B 84.247 292 15 18 63 350 13086844 13086580 6.920000e-64 255.0
12 TraesCS5A01G014800 chr5B 86.286 175 11 10 2508 2679 13084111 13083947 1.540000e-40 178.0
13 TraesCS5A01G014800 chr5B 87.156 109 11 3 1527 1632 681344303 681344195 2.630000e-23 121.0
14 TraesCS5A01G014800 chr5B 85.321 109 13 3 1527 1632 681617798 681617690 5.700000e-20 110.0
15 TraesCS5A01G014800 chr5B 88.298 94 3 2 400 485 13086416 13086323 7.380000e-19 106.0
16 TraesCS5A01G014800 chr3A 81.818 220 35 5 2833 3051 79397853 79398068 4.290000e-41 180.0
17 TraesCS5A01G014800 chr4B 79.275 193 32 4 1980 2168 15183778 15183590 1.570000e-25 128.0
18 TraesCS5A01G014800 chr4B 78.756 193 33 4 1980 2168 15149748 15149560 7.320000e-24 122.0
19 TraesCS5A01G014800 chr4B 89.247 93 10 0 1531 1623 15431123 15431031 3.410000e-22 117.0
20 TraesCS5A01G014800 chr7A 77.093 227 38 10 2834 3051 688994289 688994068 9.470000e-23 119.0
21 TraesCS5A01G014800 chr4D 88.542 96 11 0 1528 1623 7992950 7993045 3.410000e-22 117.0
22 TraesCS5A01G014800 chr4D 89.247 93 10 0 1531 1623 8150922 8150830 3.410000e-22 117.0
23 TraesCS5A01G014800 chr4D 81.752 137 24 1 2914 3049 499896736 499896600 4.410000e-21 113.0
24 TraesCS5A01G014800 chr4D 76.923 195 39 4 2854 3045 112072230 112072039 7.380000e-19 106.0
25 TraesCS5A01G014800 chr4A 89.247 93 10 0 1531 1623 595296232 595296140 3.410000e-22 117.0
26 TraesCS5A01G014800 chr4A 82.500 120 18 2 2839 2957 465229532 465229649 9.540000e-18 102.0
27 TraesCS5A01G014800 chr4A 75.949 158 34 4 2833 2990 85578746 85578593 1.610000e-10 78.7
28 TraesCS5A01G014800 chr4A 95.556 45 2 0 21 65 618465134 618465178 7.480000e-09 73.1
29 TraesCS5A01G014800 chrUn 81.752 137 24 1 2914 3049 61743779 61743915 4.410000e-21 113.0
30 TraesCS5A01G014800 chr2D 93.750 48 3 0 27 74 14135832 14135785 7.480000e-09 73.1
31 TraesCS5A01G014800 chr2D 93.333 45 3 0 21 65 575777090 575777134 3.480000e-07 67.6
32 TraesCS5A01G014800 chr7D 93.333 45 3 0 21 65 8008204 8008160 3.480000e-07 67.6
33 TraesCS5A01G014800 chr7D 97.436 39 1 0 27 65 436481284 436481246 3.480000e-07 67.6
34 TraesCS5A01G014800 chr2B 93.333 45 3 0 21 65 756177949 756177993 3.480000e-07 67.6
35 TraesCS5A01G014800 chr2B 91.111 45 4 0 21 65 773718184 773718228 1.620000e-05 62.1
36 TraesCS5A01G014800 chr1B 97.500 40 0 1 27 65 252970279 252970318 3.480000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G014800 chr5A 10196644 10202028 5384 True 9945.000000 9945 100.000000 1 5385 1 chr5A.!!$R1 5384
1 TraesCS5A01G014800 chr5D 13312940 13318978 6038 True 1464.666667 2793 85.690333 63 5382 3 chr5D.!!$R3 5319
2 TraesCS5A01G014800 chr5B 13081199 13086844 5645 True 940.571429 2647 88.011429 63 5383 7 chr5B.!!$R3 5320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 998 0.105709 GAGAGAGAGGGGGAGGAAGG 60.106 65.0 0.0 0.0 0.00 3.46 F
1799 2027 0.108804 TGGACAAGGCGACGATTCTC 60.109 55.0 0.0 0.0 0.00 2.87 F
3054 3787 0.535797 AATCGGAAAGGAGGGACGAC 59.464 55.0 0.0 0.0 36.32 4.34 F
3911 4671 0.036875 CCAGTGAGGTTGGGGAGAAC 59.963 60.0 0.0 0.0 31.87 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2483 2898 0.176910 GCTAAGCACCTCTCCAGACC 59.823 60.000 0.00 0.0 0.00 3.85 R
3157 3890 0.460284 ACCGGACGAATGCACTCATC 60.460 55.000 9.46 0.0 31.27 2.92 R
4231 5735 1.040339 GCCTCACGATCTCCTCCACT 61.040 60.000 0.00 0.0 0.00 4.00 R
4781 6346 3.118629 TGAGATGCTGGGACTTGTCATAC 60.119 47.826 3.08 0.0 0.00 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.530288 ACACGCCATGCATTAAACCC 59.470 50.000 0.00 0.00 0.00 4.11
20 21 0.529833 CACGCCATGCATTAAACCCA 59.470 50.000 0.00 0.00 0.00 4.51
21 22 1.067283 CACGCCATGCATTAAACCCAA 60.067 47.619 0.00 0.00 0.00 4.12
22 23 1.204467 ACGCCATGCATTAAACCCAAG 59.796 47.619 0.00 0.00 0.00 3.61
23 24 1.204467 CGCCATGCATTAAACCCAAGT 59.796 47.619 0.00 0.00 0.00 3.16
24 25 2.353605 CGCCATGCATTAAACCCAAGTT 60.354 45.455 0.00 0.00 38.03 2.66
25 26 3.261580 GCCATGCATTAAACCCAAGTTC 58.738 45.455 0.00 0.00 34.19 3.01
26 27 3.510719 CCATGCATTAAACCCAAGTTCG 58.489 45.455 0.00 0.00 34.19 3.95
27 28 3.056891 CCATGCATTAAACCCAAGTTCGT 60.057 43.478 0.00 0.00 34.19 3.85
28 29 4.156922 CCATGCATTAAACCCAAGTTCGTA 59.843 41.667 0.00 0.00 34.19 3.43
29 30 4.752661 TGCATTAAACCCAAGTTCGTAC 57.247 40.909 0.00 0.00 34.19 3.67
30 31 4.135306 TGCATTAAACCCAAGTTCGTACA 58.865 39.130 0.00 0.00 34.19 2.90
31 32 4.579340 TGCATTAAACCCAAGTTCGTACAA 59.421 37.500 0.00 0.00 34.19 2.41
32 33 5.067413 TGCATTAAACCCAAGTTCGTACAAA 59.933 36.000 0.00 0.00 34.19 2.83
33 34 5.627780 GCATTAAACCCAAGTTCGTACAAAG 59.372 40.000 0.00 0.00 34.19 2.77
34 35 6.731164 CATTAAACCCAAGTTCGTACAAAGT 58.269 36.000 0.00 0.00 34.19 2.66
35 36 6.756299 TTAAACCCAAGTTCGTACAAAGTT 57.244 33.333 0.00 0.00 34.19 2.66
36 37 4.625972 AACCCAAGTTCGTACAAAGTTG 57.374 40.909 7.07 7.07 38.66 3.16
37 38 3.876341 ACCCAAGTTCGTACAAAGTTGA 58.124 40.909 14.42 0.00 40.48 3.18
38 39 3.875134 ACCCAAGTTCGTACAAAGTTGAG 59.125 43.478 14.42 5.05 40.48 3.02
39 40 3.875134 CCCAAGTTCGTACAAAGTTGAGT 59.125 43.478 14.42 0.00 40.48 3.41
40 41 4.025145 CCCAAGTTCGTACAAAGTTGAGTC 60.025 45.833 14.42 0.00 40.48 3.36
41 42 4.569162 CCAAGTTCGTACAAAGTTGAGTCA 59.431 41.667 14.42 0.00 40.48 3.41
42 43 5.490213 CAAGTTCGTACAAAGTTGAGTCAC 58.510 41.667 8.18 0.00 40.48 3.67
43 44 5.007385 AGTTCGTACAAAGTTGAGTCACT 57.993 39.130 0.00 0.00 0.00 3.41
44 45 5.416947 AGTTCGTACAAAGTTGAGTCACTT 58.583 37.500 0.00 0.00 38.74 3.16
45 46 6.567050 AGTTCGTACAAAGTTGAGTCACTTA 58.433 36.000 0.00 0.00 35.87 2.24
46 47 7.208080 AGTTCGTACAAAGTTGAGTCACTTAT 58.792 34.615 0.00 0.00 35.87 1.73
47 48 7.709613 AGTTCGTACAAAGTTGAGTCACTTATT 59.290 33.333 0.00 0.00 35.87 1.40
48 49 8.333186 GTTCGTACAAAGTTGAGTCACTTATTT 58.667 33.333 0.00 0.00 35.87 1.40
49 50 8.428186 TCGTACAAAGTTGAGTCACTTATTTT 57.572 30.769 0.00 0.00 35.87 1.82
50 51 8.332464 TCGTACAAAGTTGAGTCACTTATTTTG 58.668 33.333 8.80 8.80 35.87 2.44
51 52 8.332464 CGTACAAAGTTGAGTCACTTATTTTGA 58.668 33.333 14.62 1.37 35.87 2.69
52 53 9.997482 GTACAAAGTTGAGTCACTTATTTTGAA 57.003 29.630 14.62 0.00 35.87 2.69
54 55 9.353999 ACAAAGTTGAGTCACTTATTTTGAAAC 57.646 29.630 14.62 0.00 35.87 2.78
55 56 8.523464 CAAAGTTGAGTCACTTATTTTGAAACG 58.477 33.333 5.72 0.00 35.87 3.60
56 57 6.725246 AGTTGAGTCACTTATTTTGAAACGG 58.275 36.000 0.00 0.00 0.00 4.44
57 58 6.540914 AGTTGAGTCACTTATTTTGAAACGGA 59.459 34.615 0.00 0.00 0.00 4.69
58 59 6.539649 TGAGTCACTTATTTTGAAACGGAG 57.460 37.500 0.00 0.00 0.00 4.63
59 60 5.468746 TGAGTCACTTATTTTGAAACGGAGG 59.531 40.000 0.00 0.00 0.00 4.30
60 61 5.617252 AGTCACTTATTTTGAAACGGAGGA 58.383 37.500 0.00 0.00 0.00 3.71
61 62 6.059484 AGTCACTTATTTTGAAACGGAGGAA 58.941 36.000 0.00 0.00 0.00 3.36
62 63 6.204882 AGTCACTTATTTTGAAACGGAGGAAG 59.795 38.462 0.00 0.00 0.00 3.46
63 64 6.017357 GTCACTTATTTTGAAACGGAGGAAGT 60.017 38.462 0.00 0.00 0.00 3.01
64 65 7.172019 GTCACTTATTTTGAAACGGAGGAAGTA 59.828 37.037 0.00 0.00 0.00 2.24
65 66 7.716123 TCACTTATTTTGAAACGGAGGAAGTAA 59.284 33.333 0.00 0.00 0.00 2.24
66 67 8.347035 CACTTATTTTGAAACGGAGGAAGTAAA 58.653 33.333 0.00 0.00 0.00 2.01
67 68 8.905850 ACTTATTTTGAAACGGAGGAAGTAAAA 58.094 29.630 0.00 0.00 0.00 1.52
68 69 9.738832 CTTATTTTGAAACGGAGGAAGTAAAAA 57.261 29.630 0.00 0.00 0.00 1.94
110 111 3.119602 CCAATCTCAAAGCATGTGTGGAG 60.120 47.826 0.00 0.00 0.00 3.86
130 131 2.202932 GAGATCGTGCACCGCCAT 60.203 61.111 12.15 0.00 36.19 4.40
271 276 5.905733 CACGCAGCTAGTTTGATTGAATATG 59.094 40.000 0.00 0.00 0.00 1.78
365 379 1.529226 TTTGGCCGGTGTCATACAAG 58.471 50.000 1.90 0.00 0.00 3.16
369 383 2.156098 GGCCGGTGTCATACAAGAAAA 58.844 47.619 1.90 0.00 0.00 2.29
370 384 2.161609 GGCCGGTGTCATACAAGAAAAG 59.838 50.000 1.90 0.00 0.00 2.27
371 385 3.071479 GCCGGTGTCATACAAGAAAAGA 58.929 45.455 1.90 0.00 0.00 2.52
374 388 5.335661 GCCGGTGTCATACAAGAAAAGAAAT 60.336 40.000 1.90 0.00 0.00 2.17
375 389 6.314784 CCGGTGTCATACAAGAAAAGAAATC 58.685 40.000 0.00 0.00 0.00 2.17
386 400 6.980397 ACAAGAAAAGAAATCGAAATTGCACT 59.020 30.769 0.00 0.00 0.00 4.40
387 401 6.998258 AGAAAAGAAATCGAAATTGCACTG 57.002 33.333 0.00 0.00 0.00 3.66
388 402 6.738114 AGAAAAGAAATCGAAATTGCACTGA 58.262 32.000 0.00 0.00 0.00 3.41
392 406 2.857592 ATCGAAATTGCACTGATGGC 57.142 45.000 0.00 0.00 0.00 4.40
456 583 7.547019 GTGAAAATGATGAGATCTAGTGACACA 59.453 37.037 8.59 0.00 0.00 3.72
520 679 5.335348 CGTGTTGGTAGATTTTTAACTGGGG 60.335 44.000 0.00 0.00 0.00 4.96
521 680 4.525100 TGTTGGTAGATTTTTAACTGGGGC 59.475 41.667 0.00 0.00 0.00 5.80
522 681 4.390129 TGGTAGATTTTTAACTGGGGCA 57.610 40.909 0.00 0.00 0.00 5.36
523 682 4.083565 TGGTAGATTTTTAACTGGGGCAC 58.916 43.478 0.00 0.00 0.00 5.01
524 683 3.128068 GGTAGATTTTTAACTGGGGCACG 59.872 47.826 0.00 0.00 0.00 5.34
525 684 2.871453 AGATTTTTAACTGGGGCACGT 58.129 42.857 0.00 0.00 0.00 4.49
565 728 2.093288 TGGAACAGAAGCTATCCTGCAG 60.093 50.000 6.78 6.78 33.90 4.41
566 729 2.169352 GGAACAGAAGCTATCCTGCAGA 59.831 50.000 17.39 1.21 33.90 4.26
567 730 2.977772 ACAGAAGCTATCCTGCAGAC 57.022 50.000 17.39 0.00 33.90 3.51
568 731 1.484240 ACAGAAGCTATCCTGCAGACC 59.516 52.381 17.39 0.00 33.90 3.85
569 732 1.761784 CAGAAGCTATCCTGCAGACCT 59.238 52.381 17.39 1.25 34.99 3.85
570 733 1.761784 AGAAGCTATCCTGCAGACCTG 59.238 52.381 17.39 3.81 34.99 4.00
580 743 4.538233 CAGACCTGCACACACACA 57.462 55.556 0.00 0.00 0.00 3.72
581 744 2.016961 CAGACCTGCACACACACAC 58.983 57.895 0.00 0.00 0.00 3.82
582 745 0.744057 CAGACCTGCACACACACACA 60.744 55.000 0.00 0.00 0.00 3.72
589 752 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
744 908 5.125417 GCTTTGCTTTCTCTCTCTCTCTCTA 59.875 44.000 0.00 0.00 0.00 2.43
745 909 6.678900 GCTTTGCTTTCTCTCTCTCTCTCTAG 60.679 46.154 0.00 0.00 0.00 2.43
748 912 5.130311 TGCTTTCTCTCTCTCTCTCTAGCTA 59.870 44.000 0.00 0.00 0.00 3.32
749 913 5.698545 GCTTTCTCTCTCTCTCTCTAGCTAG 59.301 48.000 15.01 15.01 0.00 3.42
790 994 1.827792 TCTAGAGAGAGAGGGGGAGG 58.172 60.000 0.00 0.00 0.00 4.30
791 995 1.298693 TCTAGAGAGAGAGGGGGAGGA 59.701 57.143 0.00 0.00 0.00 3.71
792 996 2.140224 CTAGAGAGAGAGGGGGAGGAA 58.860 57.143 0.00 0.00 0.00 3.36
793 997 0.933700 AGAGAGAGAGGGGGAGGAAG 59.066 60.000 0.00 0.00 0.00 3.46
794 998 0.105709 GAGAGAGAGGGGGAGGAAGG 60.106 65.000 0.00 0.00 0.00 3.46
795 999 0.556380 AGAGAGAGGGGGAGGAAGGA 60.556 60.000 0.00 0.00 0.00 3.36
796 1000 0.340208 GAGAGAGGGGGAGGAAGGAA 59.660 60.000 0.00 0.00 0.00 3.36
797 1001 0.341609 AGAGAGGGGGAGGAAGGAAG 59.658 60.000 0.00 0.00 0.00 3.46
808 1012 3.891366 GGAGGAAGGAAGAGAGATCTGAG 59.109 52.174 0.00 0.00 0.00 3.35
818 1022 2.562298 GAGAGATCTGAGGCCAGGTATG 59.438 54.545 5.01 0.00 40.76 2.39
837 1045 0.723981 GTGAGGAGCAGTTCAATCGC 59.276 55.000 0.00 0.00 0.00 4.58
839 1047 1.065926 TGAGGAGCAGTTCAATCGCAT 60.066 47.619 0.00 0.00 0.00 4.73
855 1063 5.808042 ATCGCATGGATATATTTGTGCTC 57.192 39.130 12.37 0.00 32.17 4.26
869 1080 3.156511 TGTGCTCGAGTTCATCATCTC 57.843 47.619 15.13 0.00 0.00 2.75
924 1135 7.040271 TGTGATTGATGTGTTGTTGATGATTCT 60.040 33.333 0.00 0.00 0.00 2.40
931 1142 6.295249 TGTGTTGTTGATGATTCTTGGAGTA 58.705 36.000 0.00 0.00 0.00 2.59
932 1143 6.427853 TGTGTTGTTGATGATTCTTGGAGTAG 59.572 38.462 0.00 0.00 0.00 2.57
958 1169 7.875971 AGTGAGTGTTAATTGATTTGTTCCTC 58.124 34.615 0.00 0.00 0.00 3.71
960 1171 6.072728 TGAGTGTTAATTGATTTGTTCCTCCG 60.073 38.462 0.00 0.00 0.00 4.63
961 1172 4.857037 GTGTTAATTGATTTGTTCCTCCGC 59.143 41.667 0.00 0.00 0.00 5.54
962 1173 4.520874 TGTTAATTGATTTGTTCCTCCGCA 59.479 37.500 0.00 0.00 0.00 5.69
980 1191 1.671261 GCAGGATCGATCGATTGAGGG 60.671 57.143 29.89 18.41 34.60 4.30
981 1192 1.889170 CAGGATCGATCGATTGAGGGA 59.111 52.381 29.89 1.30 34.60 4.20
982 1193 2.094803 CAGGATCGATCGATTGAGGGAG 60.095 54.545 29.89 13.02 34.60 4.30
1221 1435 3.570212 GACCACCACCAGCCCAGT 61.570 66.667 0.00 0.00 0.00 4.00
1334 1548 2.153401 CCAGGACCAGGACCACCAA 61.153 63.158 10.90 0.00 38.94 3.67
1464 1681 4.280494 CATAGTACGCCCGCCGCT 62.280 66.667 0.00 0.00 41.76 5.52
1701 1921 6.649155 TGCTAATCACCTGCAGAGTAATTAA 58.351 36.000 17.39 0.00 32.55 1.40
1752 1974 9.357652 TGTGCAAGAATTAATTTCTATTTGCTC 57.642 29.630 21.74 19.85 44.09 4.26
1799 2027 0.108804 TGGACAAGGCGACGATTCTC 60.109 55.000 0.00 0.00 0.00 2.87
1928 2162 1.742268 GTCAGCAAGAAGATCAAGGCC 59.258 52.381 0.00 0.00 0.00 5.19
1930 2164 1.028868 AGCAAGAAGATCAAGGCCGC 61.029 55.000 0.00 0.00 0.00 6.53
1933 2167 3.577313 GAAGATCAAGGCCGCCGC 61.577 66.667 3.05 0.00 0.00 6.53
2087 2321 3.775654 CTGGCGGAGGTGGAGGAC 61.776 72.222 0.00 0.00 0.00 3.85
2170 2404 2.146073 ATCACCGCAAAGGCAAGCAC 62.146 55.000 0.00 0.00 46.52 4.40
2172 2406 4.362476 CCGCAAAGGCAAGCACCC 62.362 66.667 0.00 0.00 41.24 4.61
2179 2432 3.066380 CAAAGGCAAGCACCCAATTAAC 58.934 45.455 0.00 0.00 0.00 2.01
2201 2458 4.706962 ACCAAGTTTCTGCTCATATTTCCC 59.293 41.667 0.00 0.00 0.00 3.97
2214 2471 6.183360 GCTCATATTTCCCTACTTGCACAAAT 60.183 38.462 0.00 0.00 0.00 2.32
2217 2474 8.682710 TCATATTTCCCTACTTGCACAAATTAC 58.317 33.333 0.00 0.00 0.00 1.89
2222 2484 8.958119 TTCCCTACTTGCACAAATTACTATAG 57.042 34.615 0.00 0.00 0.00 1.31
2260 2568 1.068474 ATTGCACTGTCGTCGTAAGC 58.932 50.000 0.00 0.00 37.18 3.09
2337 2655 2.679450 CCACGTGAATCTAAACACCGA 58.321 47.619 19.30 0.00 34.05 4.69
2375 2693 6.556639 TCATGCCATCTACTCCTACTTAGAT 58.443 40.000 0.00 0.00 35.77 1.98
2376 2694 6.435591 TCATGCCATCTACTCCTACTTAGATG 59.564 42.308 10.42 10.42 46.16 2.90
2377 2695 5.706447 TGCCATCTACTCCTACTTAGATGT 58.294 41.667 14.48 0.00 45.57 3.06
2378 2696 6.849151 TGCCATCTACTCCTACTTAGATGTA 58.151 40.000 14.48 4.27 45.57 2.29
2379 2697 6.943146 TGCCATCTACTCCTACTTAGATGTAG 59.057 42.308 14.48 0.00 45.57 2.74
2380 2698 7.169591 GCCATCTACTCCTACTTAGATGTAGA 58.830 42.308 14.48 14.75 45.57 2.59
2381 2699 7.832187 GCCATCTACTCCTACTTAGATGTAGAT 59.168 40.741 14.48 16.69 45.57 1.98
2442 2762 1.736032 CGTTTCACCTCATCCTCGTCC 60.736 57.143 0.00 0.00 0.00 4.79
2451 2771 3.254657 CCTCATCCTCGTCCACTAATCTC 59.745 52.174 0.00 0.00 0.00 2.75
2463 2783 6.238293 CGTCCACTAATCTCACAATACGAGTA 60.238 42.308 0.00 0.00 0.00 2.59
2465 2785 7.972277 GTCCACTAATCTCACAATACGAGTAAA 59.028 37.037 0.00 0.00 0.00 2.01
2466 2786 8.692710 TCCACTAATCTCACAATACGAGTAAAT 58.307 33.333 0.00 0.00 0.00 1.40
2467 2787 8.755941 CCACTAATCTCACAATACGAGTAAATG 58.244 37.037 0.00 0.00 0.00 2.32
2468 2788 9.516314 CACTAATCTCACAATACGAGTAAATGA 57.484 33.333 0.00 2.07 0.00 2.57
2469 2789 9.517609 ACTAATCTCACAATACGAGTAAATGAC 57.482 33.333 0.00 0.00 0.00 3.06
2470 2790 9.516314 CTAATCTCACAATACGAGTAAATGACA 57.484 33.333 0.00 0.00 0.00 3.58
2471 2791 7.757097 ATCTCACAATACGAGTAAATGACAC 57.243 36.000 0.00 0.00 0.00 3.67
2479 2894 4.002982 ACGAGTAAATGACACATGCATGT 58.997 39.130 26.61 26.61 42.84 3.21
2489 2904 0.609957 ACATGCATGTGTGGGTCTGG 60.610 55.000 30.92 0.83 40.03 3.86
2512 2927 5.183140 GGAGAGGTGCTTAGCAAAATAAACA 59.817 40.000 9.05 0.00 41.47 2.83
2521 3099 8.707839 TGCTTAGCAAAATAAACATGTTTTAGC 58.292 29.630 27.66 21.57 34.76 3.09
2541 3119 1.488393 CTTCTTGCCTTCTAGAGGGGG 59.512 57.143 21.52 12.43 46.40 5.40
2543 3121 0.543749 CTTGCCTTCTAGAGGGGGTG 59.456 60.000 21.52 0.00 46.40 4.61
2547 3125 1.485480 GCCTTCTAGAGGGGGTGTAAC 59.515 57.143 21.52 0.16 46.40 2.50
2548 3126 2.829023 CCTTCTAGAGGGGGTGTAACA 58.171 52.381 13.11 0.00 42.26 2.41
2550 3128 3.134804 CCTTCTAGAGGGGGTGTAACATG 59.865 52.174 13.11 0.00 42.26 3.21
2551 3129 2.116238 TCTAGAGGGGGTGTAACATGC 58.884 52.381 0.00 0.00 39.98 4.06
2564 3175 3.761218 TGTAACATGCATGGGGTGTTAAG 59.239 43.478 29.41 1.63 39.29 1.85
2576 3187 4.019321 TGGGGTGTTAAGGATCTCTTCTTG 60.019 45.833 0.00 0.00 36.93 3.02
2614 3225 0.603975 AAGTCTGCTCTGGTTTCCGC 60.604 55.000 0.00 0.00 0.00 5.54
2616 3227 2.217038 TCTGCTCTGGTTTCCGCCT 61.217 57.895 0.00 0.00 0.00 5.52
2697 3403 8.810427 CATCAAATCTTGTAACATTATTGGTGC 58.190 33.333 0.00 0.00 0.00 5.01
2698 3404 8.121305 TCAAATCTTGTAACATTATTGGTGCT 57.879 30.769 0.00 0.00 0.00 4.40
2699 3405 8.584157 TCAAATCTTGTAACATTATTGGTGCTT 58.416 29.630 0.00 0.00 0.00 3.91
2700 3406 8.649841 CAAATCTTGTAACATTATTGGTGCTTG 58.350 33.333 0.00 0.00 0.00 4.01
2701 3407 7.701539 ATCTTGTAACATTATTGGTGCTTGA 57.298 32.000 0.00 0.00 0.00 3.02
2702 3408 7.144722 TCTTGTAACATTATTGGTGCTTGAG 57.855 36.000 0.00 0.00 0.00 3.02
2703 3409 5.895636 TGTAACATTATTGGTGCTTGAGG 57.104 39.130 0.00 0.00 0.00 3.86
2704 3410 5.565509 TGTAACATTATTGGTGCTTGAGGA 58.434 37.500 0.00 0.00 0.00 3.71
2705 3411 5.647658 TGTAACATTATTGGTGCTTGAGGAG 59.352 40.000 0.00 0.00 0.00 3.69
2706 3412 4.574674 ACATTATTGGTGCTTGAGGAGA 57.425 40.909 0.00 0.00 0.00 3.71
2707 3413 4.265073 ACATTATTGGTGCTTGAGGAGAC 58.735 43.478 0.00 0.00 0.00 3.36
2708 3414 4.263462 ACATTATTGGTGCTTGAGGAGACA 60.263 41.667 0.00 0.00 0.00 3.41
2709 3415 4.574674 TTATTGGTGCTTGAGGAGACAT 57.425 40.909 0.00 0.00 0.00 3.06
2710 3416 2.957402 TTGGTGCTTGAGGAGACATT 57.043 45.000 0.00 0.00 0.00 2.71
2711 3417 2.189594 TGGTGCTTGAGGAGACATTG 57.810 50.000 0.00 0.00 0.00 2.82
2712 3418 1.699083 TGGTGCTTGAGGAGACATTGA 59.301 47.619 0.00 0.00 0.00 2.57
2713 3419 2.306805 TGGTGCTTGAGGAGACATTGAT 59.693 45.455 0.00 0.00 0.00 2.57
2714 3420 2.941720 GGTGCTTGAGGAGACATTGATC 59.058 50.000 0.00 0.00 0.00 2.92
2715 3421 3.603532 GTGCTTGAGGAGACATTGATCA 58.396 45.455 0.00 0.00 0.00 2.92
2716 3422 4.197750 GTGCTTGAGGAGACATTGATCAT 58.802 43.478 0.00 0.00 0.00 2.45
2717 3423 4.272991 GTGCTTGAGGAGACATTGATCATC 59.727 45.833 0.00 0.00 0.00 2.92
2718 3424 4.163649 TGCTTGAGGAGACATTGATCATCT 59.836 41.667 0.00 0.00 0.00 2.90
2731 3437 4.313277 TGATCATCTAGTTCGCCTTCAG 57.687 45.455 0.00 0.00 0.00 3.02
2738 3444 1.021390 AGTTCGCCTTCAGCCAATCG 61.021 55.000 0.00 0.00 38.78 3.34
2748 3454 4.508124 CCTTCAGCCAATCGATAGTGTAAC 59.492 45.833 0.00 0.00 37.40 2.50
2789 3496 4.991687 GGAATGGATAGTTCGAAGATGGAC 59.008 45.833 0.00 0.00 35.04 4.02
2835 3561 7.974675 ACACTCATTAAGCACATGTGTAATAC 58.025 34.615 26.01 9.80 35.74 1.89
2836 3562 7.824289 ACACTCATTAAGCACATGTGTAATACT 59.176 33.333 26.01 11.96 35.74 2.12
2837 3563 9.313118 CACTCATTAAGCACATGTGTAATACTA 57.687 33.333 26.01 11.02 29.39 1.82
2849 3581 8.424918 ACATGTGTAATACTATCTCCTTTCTGG 58.575 37.037 0.00 0.00 37.10 3.86
2860 3592 8.661345 ACTATCTCCTTTCTGGTTTAAAAGTCT 58.339 33.333 0.00 0.00 37.07 3.24
2863 3595 7.518188 TCTCCTTTCTGGTTTAAAAGTCTCAT 58.482 34.615 0.00 0.00 37.07 2.90
2874 3606 6.938698 TTAAAAGTCTCATGTGTACCCCTA 57.061 37.500 0.00 0.00 0.00 3.53
2875 3607 5.422214 AAAAGTCTCATGTGTACCCCTAG 57.578 43.478 0.00 0.00 0.00 3.02
2876 3608 4.332683 AAGTCTCATGTGTACCCCTAGA 57.667 45.455 0.00 0.00 0.00 2.43
2877 3609 4.544564 AGTCTCATGTGTACCCCTAGAT 57.455 45.455 0.00 0.00 0.00 1.98
2878 3610 4.475345 AGTCTCATGTGTACCCCTAGATC 58.525 47.826 0.00 0.00 0.00 2.75
2880 3612 3.137728 TCTCATGTGTACCCCTAGATCGA 59.862 47.826 0.00 0.00 0.00 3.59
2881 3613 3.220110 TCATGTGTACCCCTAGATCGAC 58.780 50.000 0.00 0.00 0.00 4.20
2883 3615 3.090210 TGTGTACCCCTAGATCGACAA 57.910 47.619 0.00 0.00 0.00 3.18
2884 3616 3.638860 TGTGTACCCCTAGATCGACAAT 58.361 45.455 0.00 0.00 0.00 2.71
2885 3617 4.795469 TGTGTACCCCTAGATCGACAATA 58.205 43.478 0.00 0.00 0.00 1.90
2985 3717 8.552296 TGGTATAATTTTTGGGGCATACAATTT 58.448 29.630 0.00 0.00 0.00 1.82
2992 3724 8.779354 TTTTTGGGGCATACAATTTGTATTAC 57.221 30.769 17.42 12.95 40.40 1.89
3000 3732 9.677567 GGCATACAATTTGTATTACATTGGTAG 57.322 33.333 17.42 5.80 40.40 3.18
3020 3752 7.439381 TGGTAGAATTGTCGATTTAGGGATAC 58.561 38.462 0.00 0.00 0.00 2.24
3021 3753 7.070198 TGGTAGAATTGTCGATTTAGGGATACA 59.930 37.037 0.00 0.00 39.74 2.29
3037 3769 4.653801 GGGATACATGTGGCCCTTTTAAAT 59.346 41.667 23.47 0.51 37.59 1.40
3038 3770 5.221441 GGGATACATGTGGCCCTTTTAAATC 60.221 44.000 23.47 8.82 37.59 2.17
3054 3787 0.535797 AATCGGAAAGGAGGGACGAC 59.464 55.000 0.00 0.00 36.32 4.34
3061 3794 0.685660 AAGGAGGGACGACCAACTTC 59.314 55.000 6.20 0.00 43.89 3.01
3068 3801 3.700038 AGGGACGACCAACTTCTAGTATG 59.300 47.826 6.20 0.00 43.89 2.39
3083 3816 8.967918 ACTTCTAGTATGTAAAGTGTAGATGCA 58.032 33.333 0.00 0.00 31.05 3.96
3157 3890 4.330074 CGGAGATTAAACAGTAAGTGCAGG 59.670 45.833 0.00 0.00 0.00 4.85
3175 3908 1.154205 GGATGAGTGCATTCGTCCGG 61.154 60.000 28.45 0.00 41.90 5.14
3201 3940 3.338275 AAGTGGCACGTGGTGGTGT 62.338 57.895 18.88 0.00 40.08 4.16
3212 3951 2.346365 GTGGTGTTCCCGGTCTCC 59.654 66.667 0.00 1.76 35.15 3.71
3228 3967 1.339610 TCTCCCATTGCACAAAAACCG 59.660 47.619 0.00 0.00 0.00 4.44
3242 3981 7.808856 TGCACAAAAACCGTAATTTTACTATCC 59.191 33.333 0.00 0.00 31.50 2.59
3272 4011 6.582677 TGTGTGTCTCAAAAAGGAGAAAAA 57.417 33.333 0.00 0.00 44.98 1.94
3350 4092 5.068591 CCCTATTGTTGGGTTATTTAGGCAC 59.931 44.000 0.00 0.00 39.82 5.01
3363 4108 3.813596 GGCACCTCATGTAAGCCG 58.186 61.111 5.70 0.00 35.42 5.52
3380 4125 3.467803 AGCCGCTTGTACATTTATCTCC 58.532 45.455 0.00 0.00 0.00 3.71
3446 4193 2.617308 CTCCATGCATGTGAACTCCATC 59.383 50.000 24.58 0.00 0.00 3.51
3475 4222 3.704566 AGAAAGCTGTGTGACCGGATATA 59.295 43.478 9.46 0.00 0.00 0.86
3498 4245 2.302733 AGATGTGAAAACCCCAAATGGC 59.697 45.455 0.00 0.00 0.00 4.40
3508 4256 2.022133 ACCCCAAATGGCCATCCTTATT 60.022 45.455 21.08 6.19 0.00 1.40
3628 4380 4.506758 TGGAGATATGATGTGTGTGTGTG 58.493 43.478 0.00 0.00 0.00 3.82
3629 4381 4.020307 TGGAGATATGATGTGTGTGTGTGT 60.020 41.667 0.00 0.00 0.00 3.72
3630 4382 4.330894 GGAGATATGATGTGTGTGTGTGTG 59.669 45.833 0.00 0.00 0.00 3.82
3631 4383 4.898320 AGATATGATGTGTGTGTGTGTGT 58.102 39.130 0.00 0.00 0.00 3.72
3632 4384 4.692155 AGATATGATGTGTGTGTGTGTGTG 59.308 41.667 0.00 0.00 0.00 3.82
3633 4385 2.106477 TGATGTGTGTGTGTGTGTGT 57.894 45.000 0.00 0.00 0.00 3.72
3634 4386 1.736681 TGATGTGTGTGTGTGTGTGTG 59.263 47.619 0.00 0.00 0.00 3.82
3635 4387 1.737236 GATGTGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
3636 4388 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3637 4389 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3638 4390 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3639 4391 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3640 4392 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3641 4393 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3642 4394 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3643 4395 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3644 4396 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3645 4397 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3646 4398 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3647 4399 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3648 4400 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3649 4401 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3650 4402 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3651 4403 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3656 4408 2.618709 TGTGTGTGTGTGTGTGTTGAAA 59.381 40.909 0.00 0.00 0.00 2.69
3702 4454 4.958509 AGAAGTGATTGATCGATCAGCAT 58.041 39.130 25.95 18.59 36.76 3.79
3766 4523 6.892456 TCATAGTTAAGAGATCAGCCGGATAT 59.108 38.462 5.05 0.00 36.00 1.63
3784 4541 9.708092 GCCGGATATAACTTTTTCTTCTATACT 57.292 33.333 5.05 0.00 0.00 2.12
3819 4577 5.772825 ATGTGTACTTTTCATGCAGTTGT 57.227 34.783 0.00 0.00 0.00 3.32
3827 4585 0.943673 TCATGCAGTTGTGTCGTTGG 59.056 50.000 0.00 0.00 0.00 3.77
3843 4601 8.041919 TGTGTCGTTGGATAGGTAATAAATCAA 58.958 33.333 0.00 0.00 0.00 2.57
3879 4637 6.478344 TGATAAACTTTTTGGCACACACAATC 59.522 34.615 0.00 0.00 39.29 2.67
3880 4638 3.177997 ACTTTTTGGCACACACAATCC 57.822 42.857 0.00 0.00 39.29 3.01
3881 4639 2.765699 ACTTTTTGGCACACACAATCCT 59.234 40.909 0.00 0.00 39.29 3.24
3882 4640 3.957497 ACTTTTTGGCACACACAATCCTA 59.043 39.130 0.00 0.00 39.29 2.94
3883 4641 4.202111 ACTTTTTGGCACACACAATCCTAC 60.202 41.667 0.00 0.00 39.29 3.18
3884 4642 2.949177 TTGGCACACACAATCCTACT 57.051 45.000 0.00 0.00 39.29 2.57
3885 4643 4.359434 TTTGGCACACACAATCCTACTA 57.641 40.909 0.00 0.00 39.29 1.82
3911 4671 0.036875 CCAGTGAGGTTGGGGAGAAC 59.963 60.000 0.00 0.00 31.87 3.01
3927 4687 3.935828 GGAGAACAAACTGTAGCATCTCC 59.064 47.826 13.40 13.40 41.00 3.71
4080 5069 4.058124 ACATGATATACGTGGCACATCAC 58.942 43.478 19.09 4.21 44.52 3.06
4117 5106 4.220693 ACACTGTGGTATACATGCATGT 57.779 40.909 33.20 33.20 44.48 3.21
4197 5701 6.909550 ATTAATTACCTGGTGCAACTTTGA 57.090 33.333 10.23 0.00 36.74 2.69
4231 5735 3.394274 TGGAAGAGGGATTCAACTCAACA 59.606 43.478 9.41 3.86 36.20 3.33
4264 5768 1.301716 GAGGCGGCTCAACTTGTCA 60.302 57.895 31.94 0.00 0.00 3.58
4333 5838 4.711846 TCACCAAGAGAGAATGCTAAGCTA 59.288 41.667 0.00 0.00 0.00 3.32
4334 5839 5.049167 CACCAAGAGAGAATGCTAAGCTAG 58.951 45.833 0.00 0.00 0.00 3.42
4372 5887 1.004745 TCAGCCCTTTCCTTGGATGAC 59.995 52.381 0.00 0.00 41.82 3.06
4379 5894 5.532779 GCCCTTTCCTTGGATGACTTTATAG 59.467 44.000 0.00 0.00 0.00 1.31
4423 5938 2.270352 TGGTGAGGAATTGCTCGTTT 57.730 45.000 20.39 0.00 0.00 3.60
4428 5943 3.125316 GTGAGGAATTGCTCGTTTCGATT 59.875 43.478 20.39 0.00 34.61 3.34
4464 6008 6.646267 TGCATGCATGATCAGCTTATAGATA 58.354 36.000 30.64 0.00 0.00 1.98
4465 6009 7.280356 TGCATGCATGATCAGCTTATAGATAT 58.720 34.615 30.64 0.00 0.00 1.63
4466 6010 8.426489 TGCATGCATGATCAGCTTATAGATATA 58.574 33.333 30.64 0.00 0.00 0.86
4467 6011 9.438228 GCATGCATGATCAGCTTATAGATATAT 57.562 33.333 30.64 0.00 0.00 0.86
4474 6018 9.591792 TGATCAGCTTATAGATATATGTTGCAC 57.408 33.333 0.00 0.00 30.22 4.57
4475 6019 8.640091 ATCAGCTTATAGATATATGTTGCACG 57.360 34.615 0.00 0.00 30.22 5.34
4476 6020 6.531594 TCAGCTTATAGATATATGTTGCACGC 59.468 38.462 0.00 0.00 30.22 5.34
4477 6021 6.311200 CAGCTTATAGATATATGTTGCACGCA 59.689 38.462 0.00 0.00 0.00 5.24
4478 6022 7.010830 CAGCTTATAGATATATGTTGCACGCAT 59.989 37.037 7.90 7.90 0.00 4.73
4495 6039 2.360225 TGCGTGCATGCATGGAGT 60.360 55.556 34.64 0.00 40.62 3.85
4692 6240 8.871686 TGGACGAATATATATGTCACATATGC 57.128 34.615 19.07 0.00 33.04 3.14
4735 6298 6.437928 TGTTGAACTGTCTGCATCAATTAAC 58.562 36.000 1.79 4.31 34.62 2.01
4781 6346 7.493645 TGATCTTCGCAGCTAATTCCATATATG 59.506 37.037 5.68 5.68 0.00 1.78
4806 6373 2.170187 GACAAGTCCCAGCATCTCATCT 59.830 50.000 0.00 0.00 0.00 2.90
4808 6375 3.387374 ACAAGTCCCAGCATCTCATCTAG 59.613 47.826 0.00 0.00 0.00 2.43
4811 6378 4.406456 AGTCCCAGCATCTCATCTAGTAG 58.594 47.826 0.00 0.00 0.00 2.57
4812 6379 4.141041 AGTCCCAGCATCTCATCTAGTAGT 60.141 45.833 0.00 0.00 0.00 2.73
4813 6380 5.073827 AGTCCCAGCATCTCATCTAGTAGTA 59.926 44.000 0.00 0.00 0.00 1.82
4814 6381 5.182380 GTCCCAGCATCTCATCTAGTAGTAC 59.818 48.000 0.00 0.00 0.00 2.73
4815 6382 4.461081 CCCAGCATCTCATCTAGTAGTACC 59.539 50.000 0.00 0.00 0.00 3.34
4816 6383 5.073428 CCAGCATCTCATCTAGTAGTACCA 58.927 45.833 0.00 0.00 0.00 3.25
4817 6384 5.714333 CCAGCATCTCATCTAGTAGTACCAT 59.286 44.000 0.00 0.00 0.00 3.55
4887 6471 3.122150 GTGTAGTGCACGCATGAGA 57.878 52.632 17.53 0.00 38.45 3.27
4888 6472 1.645034 GTGTAGTGCACGCATGAGAT 58.355 50.000 17.53 0.00 38.45 2.75
4981 6568 4.698304 AGTATTATCTAGCTCCTCTGCGTC 59.302 45.833 0.00 0.00 38.13 5.19
5044 6631 6.030228 GTGATTTGCACAGCCTTAAAGATAC 58.970 40.000 0.00 0.00 46.91 2.24
5295 6882 6.998673 CCATCATGGAGTATATCATGCATGAT 59.001 38.462 37.04 37.04 44.33 2.45
5296 6883 8.154856 CCATCATGGAGTATATCATGCATGATA 58.845 37.037 38.42 38.42 45.31 2.15
5356 6943 1.538047 TGATCAGTGCTTTCTTGGCC 58.462 50.000 0.00 0.00 0.00 5.36
5361 6952 1.342174 CAGTGCTTTCTTGGCCATGTT 59.658 47.619 17.54 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.530288 GGGTTTAATGCATGGCGTGT 59.470 50.000 8.75 0.00 0.00 4.49
1 2 0.529833 TGGGTTTAATGCATGGCGTG 59.470 50.000 0.00 1.31 0.00 5.34
3 4 1.204467 ACTTGGGTTTAATGCATGGCG 59.796 47.619 0.00 0.00 0.00 5.69
4 5 3.261580 GAACTTGGGTTTAATGCATGGC 58.738 45.455 0.00 0.00 35.58 4.40
5 6 3.056891 ACGAACTTGGGTTTAATGCATGG 60.057 43.478 0.00 0.00 35.58 3.66
6 7 4.173036 ACGAACTTGGGTTTAATGCATG 57.827 40.909 0.00 0.00 35.58 4.06
8 9 4.135306 TGTACGAACTTGGGTTTAATGCA 58.865 39.130 0.00 0.00 35.58 3.96
9 10 4.752661 TGTACGAACTTGGGTTTAATGC 57.247 40.909 0.00 0.00 35.58 3.56
10 11 6.731164 ACTTTGTACGAACTTGGGTTTAATG 58.269 36.000 0.00 0.00 35.58 1.90
11 12 6.947644 ACTTTGTACGAACTTGGGTTTAAT 57.052 33.333 0.00 0.00 35.58 1.40
12 13 6.373774 TCAACTTTGTACGAACTTGGGTTTAA 59.626 34.615 12.58 0.00 35.58 1.52
13 14 5.879223 TCAACTTTGTACGAACTTGGGTTTA 59.121 36.000 12.58 0.00 35.58 2.01
14 15 4.701171 TCAACTTTGTACGAACTTGGGTTT 59.299 37.500 12.58 0.00 35.58 3.27
15 16 4.263435 TCAACTTTGTACGAACTTGGGTT 58.737 39.130 12.58 4.25 38.52 4.11
16 17 3.875134 CTCAACTTTGTACGAACTTGGGT 59.125 43.478 12.58 0.00 0.00 4.51
17 18 3.875134 ACTCAACTTTGTACGAACTTGGG 59.125 43.478 11.53 11.53 0.00 4.12
18 19 4.569162 TGACTCAACTTTGTACGAACTTGG 59.431 41.667 12.58 7.97 0.00 3.61
19 20 5.291128 AGTGACTCAACTTTGTACGAACTTG 59.709 40.000 8.27 8.27 0.00 3.16
20 21 5.416947 AGTGACTCAACTTTGTACGAACTT 58.583 37.500 0.00 0.00 0.00 2.66
21 22 5.007385 AGTGACTCAACTTTGTACGAACT 57.993 39.130 0.00 0.00 0.00 3.01
22 23 5.713822 AAGTGACTCAACTTTGTACGAAC 57.286 39.130 0.00 0.00 37.05 3.95
23 24 8.428186 AAATAAGTGACTCAACTTTGTACGAA 57.572 30.769 0.00 0.00 40.77 3.85
24 25 8.332464 CAAAATAAGTGACTCAACTTTGTACGA 58.668 33.333 0.00 0.00 40.77 3.43
25 26 8.332464 TCAAAATAAGTGACTCAACTTTGTACG 58.668 33.333 0.00 0.00 40.77 3.67
26 27 9.997482 TTCAAAATAAGTGACTCAACTTTGTAC 57.003 29.630 0.00 0.00 40.77 2.90
28 29 9.353999 GTTTCAAAATAAGTGACTCAACTTTGT 57.646 29.630 0.00 0.00 40.77 2.83
29 30 8.523464 CGTTTCAAAATAAGTGACTCAACTTTG 58.477 33.333 0.00 0.00 40.77 2.77
30 31 7.700656 CCGTTTCAAAATAAGTGACTCAACTTT 59.299 33.333 0.00 0.00 40.77 2.66
31 32 7.066525 TCCGTTTCAAAATAAGTGACTCAACTT 59.933 33.333 0.00 0.00 42.89 2.66
32 33 6.540914 TCCGTTTCAAAATAAGTGACTCAACT 59.459 34.615 0.00 0.00 0.00 3.16
33 34 6.721321 TCCGTTTCAAAATAAGTGACTCAAC 58.279 36.000 0.00 0.00 0.00 3.18
34 35 6.017440 CCTCCGTTTCAAAATAAGTGACTCAA 60.017 38.462 0.00 0.00 0.00 3.02
35 36 5.468746 CCTCCGTTTCAAAATAAGTGACTCA 59.531 40.000 0.00 0.00 0.00 3.41
36 37 5.699458 TCCTCCGTTTCAAAATAAGTGACTC 59.301 40.000 0.00 0.00 0.00 3.36
37 38 5.617252 TCCTCCGTTTCAAAATAAGTGACT 58.383 37.500 0.00 0.00 0.00 3.41
38 39 5.934935 TCCTCCGTTTCAAAATAAGTGAC 57.065 39.130 0.00 0.00 0.00 3.67
39 40 6.059484 ACTTCCTCCGTTTCAAAATAAGTGA 58.941 36.000 0.00 0.00 0.00 3.41
40 41 6.313744 ACTTCCTCCGTTTCAAAATAAGTG 57.686 37.500 0.00 0.00 0.00 3.16
41 42 8.454570 TTTACTTCCTCCGTTTCAAAATAAGT 57.545 30.769 0.00 0.00 0.00 2.24
42 43 9.738832 TTTTTACTTCCTCCGTTTCAAAATAAG 57.261 29.630 0.00 0.00 0.00 1.73
65 66 9.945904 TTGGTGACCTGTTTTAGTTTTATTTTT 57.054 25.926 2.11 0.00 0.00 1.94
67 68 9.758651 GATTGGTGACCTGTTTTAGTTTTATTT 57.241 29.630 2.11 0.00 0.00 1.40
68 69 9.143155 AGATTGGTGACCTGTTTTAGTTTTATT 57.857 29.630 2.11 0.00 0.00 1.40
69 70 8.706322 AGATTGGTGACCTGTTTTAGTTTTAT 57.294 30.769 2.11 0.00 0.00 1.40
84 85 3.254166 ACACATGCTTTGAGATTGGTGAC 59.746 43.478 0.00 0.00 0.00 3.67
271 276 1.372128 CAACTTTTGAGCGCCTGGC 60.372 57.895 9.11 9.11 44.05 4.85
350 355 3.071479 TCTTTTCTTGTATGACACCGGC 58.929 45.455 0.00 0.00 0.00 6.13
352 357 6.015504 CGATTTCTTTTCTTGTATGACACCG 58.984 40.000 0.00 0.00 0.00 4.94
358 372 8.914654 TGCAATTTCGATTTCTTTTCTTGTATG 58.085 29.630 0.00 0.00 0.00 2.39
361 375 6.980397 AGTGCAATTTCGATTTCTTTTCTTGT 59.020 30.769 0.00 0.00 0.00 3.16
365 379 6.991485 TCAGTGCAATTTCGATTTCTTTTC 57.009 33.333 0.00 0.00 0.00 2.29
369 383 4.676196 GCCATCAGTGCAATTTCGATTTCT 60.676 41.667 0.00 0.00 0.00 2.52
370 384 3.549070 GCCATCAGTGCAATTTCGATTTC 59.451 43.478 0.00 0.00 0.00 2.17
371 385 3.194116 AGCCATCAGTGCAATTTCGATTT 59.806 39.130 0.00 0.00 0.00 2.17
374 388 1.469703 CAGCCATCAGTGCAATTTCGA 59.530 47.619 0.00 0.00 0.00 3.71
375 389 1.904144 CAGCCATCAGTGCAATTTCG 58.096 50.000 0.00 0.00 0.00 3.46
386 400 0.178995 TGTCCAAGTTGCAGCCATCA 60.179 50.000 0.00 0.00 0.00 3.07
387 401 1.180029 ATGTCCAAGTTGCAGCCATC 58.820 50.000 0.00 0.00 0.00 3.51
388 402 1.636148 AATGTCCAAGTTGCAGCCAT 58.364 45.000 0.00 0.00 0.00 4.40
392 406 6.272318 TGAAAAGTAAATGTCCAAGTTGCAG 58.728 36.000 0.00 0.00 0.00 4.41
500 659 4.525100 GTGCCCCAGTTAAAAATCTACCAA 59.475 41.667 0.00 0.00 0.00 3.67
501 660 4.083565 GTGCCCCAGTTAAAAATCTACCA 58.916 43.478 0.00 0.00 0.00 3.25
520 679 3.064271 TGTTTTCTTGGAACTGTACGTGC 59.936 43.478 0.00 0.00 0.00 5.34
521 680 4.331717 ACTGTTTTCTTGGAACTGTACGTG 59.668 41.667 0.00 0.00 37.39 4.49
522 681 4.331717 CACTGTTTTCTTGGAACTGTACGT 59.668 41.667 0.00 0.00 37.16 3.57
523 682 4.260620 CCACTGTTTTCTTGGAACTGTACG 60.261 45.833 0.00 0.00 37.16 3.67
524 683 4.879545 TCCACTGTTTTCTTGGAACTGTAC 59.120 41.667 0.00 0.00 36.45 2.90
525 684 5.105567 TCCACTGTTTTCTTGGAACTGTA 57.894 39.130 0.00 0.00 36.45 2.74
565 728 1.024046 TGTGTGTGTGTGTGCAGGTC 61.024 55.000 0.00 0.00 0.00 3.85
566 729 1.002746 TGTGTGTGTGTGTGCAGGT 60.003 52.632 0.00 0.00 0.00 4.00
567 730 1.304509 TGTGTGTGTGTGTGTGCAGG 61.305 55.000 0.00 0.00 0.00 4.85
568 731 0.179192 GTGTGTGTGTGTGTGTGCAG 60.179 55.000 0.00 0.00 0.00 4.41
569 732 0.886490 TGTGTGTGTGTGTGTGTGCA 60.886 50.000 0.00 0.00 0.00 4.57
570 733 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
571 734 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
572 735 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
573 736 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
574 737 6.875948 AAATATATGTGTGTGTGTGTGTGT 57.124 33.333 0.00 0.00 0.00 3.72
575 738 8.028540 ACTAAATATATGTGTGTGTGTGTGTG 57.971 34.615 0.00 0.00 0.00 3.82
576 739 9.884636 ATACTAAATATATGTGTGTGTGTGTGT 57.115 29.630 0.00 0.00 0.00 3.72
668 832 3.697542 AGTTTTTGGTTGTGTGTCCTACC 59.302 43.478 0.00 0.00 0.00 3.18
782 986 0.341609 CTCTCTTCCTTCCTCCCCCT 59.658 60.000 0.00 0.00 0.00 4.79
784 988 2.090775 AGATCTCTCTTCCTTCCTCCCC 60.091 54.545 0.00 0.00 0.00 4.81
787 991 3.891366 CCTCAGATCTCTCTTCCTTCCTC 59.109 52.174 0.00 0.00 0.00 3.71
788 992 3.914771 CCTCAGATCTCTCTTCCTTCCT 58.085 50.000 0.00 0.00 0.00 3.36
789 993 2.365293 GCCTCAGATCTCTCTTCCTTCC 59.635 54.545 0.00 0.00 0.00 3.46
790 994 2.365293 GGCCTCAGATCTCTCTTCCTTC 59.635 54.545 0.00 0.00 0.00 3.46
791 995 2.292785 TGGCCTCAGATCTCTCTTCCTT 60.293 50.000 3.32 0.00 0.00 3.36
792 996 1.290431 TGGCCTCAGATCTCTCTTCCT 59.710 52.381 3.32 0.00 0.00 3.36
793 997 1.688197 CTGGCCTCAGATCTCTCTTCC 59.312 57.143 3.32 0.00 43.49 3.46
794 998 1.688197 CCTGGCCTCAGATCTCTCTTC 59.312 57.143 3.32 0.00 43.49 2.87
795 999 1.008206 ACCTGGCCTCAGATCTCTCTT 59.992 52.381 3.32 0.00 43.49 2.85
796 1000 0.636101 ACCTGGCCTCAGATCTCTCT 59.364 55.000 3.32 0.00 43.49 3.10
797 1001 2.373335 TACCTGGCCTCAGATCTCTC 57.627 55.000 3.32 0.00 43.49 3.20
808 1012 1.147153 GCTCCTCACATACCTGGCC 59.853 63.158 0.00 0.00 0.00 5.36
818 1022 0.723981 GCGATTGAACTGCTCCTCAC 59.276 55.000 0.00 0.00 0.00 3.51
837 1045 6.424812 TGAACTCGAGCACAAATATATCCATG 59.575 38.462 13.61 0.00 0.00 3.66
839 1047 5.912892 TGAACTCGAGCACAAATATATCCA 58.087 37.500 13.61 0.00 0.00 3.41
869 1080 1.372087 GCCCAGCTTGATTGGACTCG 61.372 60.000 0.00 0.00 37.96 4.18
924 1135 7.297936 TCAATTAACACTCACTCTACTCCAA 57.702 36.000 0.00 0.00 0.00 3.53
931 1142 7.721399 AGGAACAAATCAATTAACACTCACTCT 59.279 33.333 0.00 0.00 0.00 3.24
932 1143 7.875971 AGGAACAAATCAATTAACACTCACTC 58.124 34.615 0.00 0.00 0.00 3.51
958 1169 0.039165 TCAATCGATCGATCCTGCGG 60.039 55.000 29.48 15.01 33.08 5.69
960 1171 1.671261 CCCTCAATCGATCGATCCTGC 60.671 57.143 29.48 0.00 33.08 4.85
961 1172 1.889170 TCCCTCAATCGATCGATCCTG 59.111 52.381 29.48 23.84 33.08 3.86
962 1173 2.166829 CTCCCTCAATCGATCGATCCT 58.833 52.381 29.48 13.61 33.08 3.24
969 1180 0.563173 TCCCTCCTCCCTCAATCGAT 59.437 55.000 0.00 0.00 0.00 3.59
980 1191 0.761323 GCCTAACTCCCTCCCTCCTC 60.761 65.000 0.00 0.00 0.00 3.71
981 1192 1.315216 GCCTAACTCCCTCCCTCCT 59.685 63.158 0.00 0.00 0.00 3.69
982 1193 0.400670 ATGCCTAACTCCCTCCCTCC 60.401 60.000 0.00 0.00 0.00 4.30
1334 1548 3.640257 CTCATGGGCCTGCTGCTGT 62.640 63.158 4.53 0.00 40.92 4.40
1749 1971 5.003692 TCACAGTGTAGAATCAGATGAGC 57.996 43.478 0.00 0.00 0.00 4.26
1752 1974 5.006455 GCACATCACAGTGTAGAATCAGATG 59.994 44.000 13.20 13.20 41.52 2.90
1799 2027 3.751246 TACTTGACCGCGTCCCCG 61.751 66.667 4.92 0.00 37.07 5.73
1811 2039 0.737715 GCAGCTCCCTCACGTACTTG 60.738 60.000 0.00 0.00 0.00 3.16
1880 2108 2.351276 GAGCGGATGGTGGTGGTT 59.649 61.111 0.00 0.00 0.00 3.67
2008 2242 2.651361 CCAGCACGGTCTTCTCGT 59.349 61.111 0.00 0.00 41.93 4.18
2030 2264 1.133253 CGCGTTCTTGCAGTGGATG 59.867 57.895 0.00 0.00 34.15 3.51
2170 2404 4.280677 TGAGCAGAAACTTGGTTAATTGGG 59.719 41.667 0.00 0.00 0.00 4.12
2172 2406 9.643693 AAATATGAGCAGAAACTTGGTTAATTG 57.356 29.630 0.00 0.00 0.00 2.32
2179 2432 4.952335 AGGGAAATATGAGCAGAAACTTGG 59.048 41.667 0.00 0.00 0.00 3.61
2214 2471 9.628500 TTGCACTCTTGACTCTATCTATAGTAA 57.372 33.333 0.00 0.00 0.00 2.24
2217 2474 9.979578 AATTTGCACTCTTGACTCTATCTATAG 57.020 33.333 0.00 0.00 0.00 1.31
2222 2484 5.567552 GCAATTTGCACTCTTGACTCTATC 58.432 41.667 16.35 0.00 44.26 2.08
2253 2525 5.717119 AAGAAAATCTTAGTCGGCTTACGA 58.283 37.500 0.00 0.00 41.56 3.43
2254 2526 6.020041 GGTAAGAAAATCTTAGTCGGCTTACG 60.020 42.308 0.00 0.00 39.41 3.18
2260 2568 7.265673 TCAGATGGTAAGAAAATCTTAGTCGG 58.734 38.462 0.22 2.12 39.41 4.79
2291 2599 9.023962 GCAGGGTGGAATTAATGATCAATATTA 57.976 33.333 0.00 0.00 0.00 0.98
2295 2603 4.590222 GGCAGGGTGGAATTAATGATCAAT 59.410 41.667 0.00 0.00 0.00 2.57
2315 2623 2.147958 GGTGTTTAGATTCACGTGGCA 58.852 47.619 17.00 2.93 35.67 4.92
2337 2655 0.178998 GCATGAGCCATCCCATGTCT 60.179 55.000 0.00 0.00 41.49 3.41
2382 2700 9.725019 TCCAAGTCGCATGATATTTTCTTATAT 57.275 29.630 0.00 0.00 0.00 0.86
2383 2701 9.725019 ATCCAAGTCGCATGATATTTTCTTATA 57.275 29.630 0.00 0.00 0.00 0.98
2423 2741 1.275291 TGGACGAGGATGAGGTGAAAC 59.725 52.381 0.00 0.00 0.00 2.78
2442 2762 9.516314 TCATTTACTCGTATTGTGAGATTAGTG 57.484 33.333 0.00 0.00 36.93 2.74
2451 2771 5.959527 GCATGTGTCATTTACTCGTATTGTG 59.040 40.000 0.00 0.00 0.00 3.33
2470 2790 0.609957 CCAGACCCACACATGCATGT 60.610 55.000 26.61 26.61 42.84 3.21
2471 2791 0.322726 TCCAGACCCACACATGCATG 60.323 55.000 25.09 25.09 0.00 4.06
2479 2894 2.217038 GCACCTCTCCAGACCCACA 61.217 63.158 0.00 0.00 0.00 4.17
2483 2898 0.176910 GCTAAGCACCTCTCCAGACC 59.823 60.000 0.00 0.00 0.00 3.85
2489 2904 6.254281 TGTTTATTTTGCTAAGCACCTCTC 57.746 37.500 0.00 0.00 38.71 3.20
2512 2927 6.476378 TCTAGAAGGCAAGAAGCTAAAACAT 58.524 36.000 0.00 0.00 44.79 2.71
2520 3098 1.134250 CCCCTCTAGAAGGCAAGAAGC 60.134 57.143 1.35 0.00 44.71 3.86
2521 3099 1.488393 CCCCCTCTAGAAGGCAAGAAG 59.512 57.143 1.35 0.00 44.71 2.85
2541 3119 1.544724 ACACCCCATGCATGTTACAC 58.455 50.000 24.58 0.00 0.00 2.90
2543 3121 3.130340 CCTTAACACCCCATGCATGTTAC 59.870 47.826 24.58 0.00 38.26 2.50
2547 3125 2.142356 TCCTTAACACCCCATGCATG 57.858 50.000 20.19 20.19 0.00 4.06
2548 3126 2.515429 AGATCCTTAACACCCCATGCAT 59.485 45.455 0.00 0.00 0.00 3.96
2550 3128 2.173569 AGAGATCCTTAACACCCCATGC 59.826 50.000 0.00 0.00 0.00 4.06
2551 3129 4.164988 AGAAGAGATCCTTAACACCCCATG 59.835 45.833 0.00 0.00 34.68 3.66
2614 3225 5.479306 TGTCGAAAATAAAGGAGAGACAGG 58.521 41.667 0.00 0.00 34.01 4.00
2616 3227 7.421530 CTTTGTCGAAAATAAAGGAGAGACA 57.578 36.000 0.00 0.00 33.67 3.41
2690 3396 3.087031 CAATGTCTCCTCAAGCACCAAT 58.913 45.455 0.00 0.00 0.00 3.16
2691 3397 2.106338 TCAATGTCTCCTCAAGCACCAA 59.894 45.455 0.00 0.00 0.00 3.67
2692 3398 1.699083 TCAATGTCTCCTCAAGCACCA 59.301 47.619 0.00 0.00 0.00 4.17
2693 3399 2.479566 TCAATGTCTCCTCAAGCACC 57.520 50.000 0.00 0.00 0.00 5.01
2694 3400 3.603532 TGATCAATGTCTCCTCAAGCAC 58.396 45.455 0.00 0.00 0.00 4.40
2695 3401 3.986996 TGATCAATGTCTCCTCAAGCA 57.013 42.857 0.00 0.00 0.00 3.91
2696 3402 4.706035 AGATGATCAATGTCTCCTCAAGC 58.294 43.478 0.00 0.00 0.00 4.01
2697 3403 7.053316 ACTAGATGATCAATGTCTCCTCAAG 57.947 40.000 0.00 0.00 0.00 3.02
2698 3404 7.429374 AACTAGATGATCAATGTCTCCTCAA 57.571 36.000 0.00 0.00 0.00 3.02
2699 3405 6.238869 CGAACTAGATGATCAATGTCTCCTCA 60.239 42.308 0.00 0.00 0.00 3.86
2700 3406 6.148948 CGAACTAGATGATCAATGTCTCCTC 58.851 44.000 0.00 0.00 0.00 3.71
2701 3407 5.508825 GCGAACTAGATGATCAATGTCTCCT 60.509 44.000 0.00 0.00 0.00 3.69
2702 3408 4.683781 GCGAACTAGATGATCAATGTCTCC 59.316 45.833 0.00 0.00 0.00 3.71
2703 3409 4.683781 GGCGAACTAGATGATCAATGTCTC 59.316 45.833 0.00 0.00 0.00 3.36
2704 3410 4.343526 AGGCGAACTAGATGATCAATGTCT 59.656 41.667 0.00 0.38 0.00 3.41
2705 3411 4.626042 AGGCGAACTAGATGATCAATGTC 58.374 43.478 0.00 0.00 0.00 3.06
2706 3412 4.679373 AGGCGAACTAGATGATCAATGT 57.321 40.909 0.00 0.00 0.00 2.71
2707 3413 5.052481 TGAAGGCGAACTAGATGATCAATG 58.948 41.667 0.00 0.00 0.00 2.82
2708 3414 5.282055 TGAAGGCGAACTAGATGATCAAT 57.718 39.130 0.00 0.00 0.00 2.57
2709 3415 4.686972 CTGAAGGCGAACTAGATGATCAA 58.313 43.478 0.00 0.00 0.00 2.57
2710 3416 3.491619 GCTGAAGGCGAACTAGATGATCA 60.492 47.826 0.00 0.00 0.00 2.92
2711 3417 3.056304 GCTGAAGGCGAACTAGATGATC 58.944 50.000 0.00 0.00 0.00 2.92
2712 3418 2.224161 GGCTGAAGGCGAACTAGATGAT 60.224 50.000 0.00 0.00 42.94 2.45
2713 3419 1.137086 GGCTGAAGGCGAACTAGATGA 59.863 52.381 0.00 0.00 42.94 2.92
2714 3420 1.134699 TGGCTGAAGGCGAACTAGATG 60.135 52.381 0.00 0.00 44.42 2.90
2715 3421 1.195115 TGGCTGAAGGCGAACTAGAT 58.805 50.000 0.00 0.00 44.42 1.98
2716 3422 0.973632 TTGGCTGAAGGCGAACTAGA 59.026 50.000 0.00 0.00 44.42 2.43
2717 3423 1.936547 GATTGGCTGAAGGCGAACTAG 59.063 52.381 0.00 0.00 41.17 2.57
2718 3424 1.739035 CGATTGGCTGAAGGCGAACTA 60.739 52.381 0.00 0.00 41.17 2.24
2731 3437 5.539582 TGTTTGTTACACTATCGATTGGC 57.460 39.130 1.71 0.00 0.00 4.52
2767 3474 4.991687 GGTCCATCTTCGAACTATCCATTC 59.008 45.833 0.00 0.00 0.00 2.67
2789 3496 1.757118 TCCTAGGAGAAGCATCAACGG 59.243 52.381 7.62 0.00 0.00 4.44
2835 3561 9.157104 GAGACTTTTAAACCAGAAAGGAGATAG 57.843 37.037 0.00 0.00 41.22 2.08
2836 3562 8.656806 TGAGACTTTTAAACCAGAAAGGAGATA 58.343 33.333 0.00 0.00 41.22 1.98
2837 3563 7.518188 TGAGACTTTTAAACCAGAAAGGAGAT 58.482 34.615 0.00 0.00 41.22 2.75
2838 3564 6.895782 TGAGACTTTTAAACCAGAAAGGAGA 58.104 36.000 0.00 0.00 41.22 3.71
2840 3566 7.013274 CACATGAGACTTTTAAACCAGAAAGGA 59.987 37.037 0.00 0.00 41.22 3.36
2849 3581 6.002082 AGGGGTACACATGAGACTTTTAAAC 58.998 40.000 0.00 0.00 0.00 2.01
2860 3592 3.220110 GTCGATCTAGGGGTACACATGA 58.780 50.000 0.00 0.00 0.00 3.07
2863 3595 2.812836 TGTCGATCTAGGGGTACACA 57.187 50.000 0.00 0.00 0.00 3.72
2874 3606 9.778741 ATGTTATGTTGGTTATATTGTCGATCT 57.221 29.630 0.00 0.00 0.00 2.75
2875 3607 9.811655 CATGTTATGTTGGTTATATTGTCGATC 57.188 33.333 0.00 0.00 0.00 3.69
2876 3608 9.554395 TCATGTTATGTTGGTTATATTGTCGAT 57.446 29.630 0.00 0.00 0.00 3.59
2877 3609 8.950208 TCATGTTATGTTGGTTATATTGTCGA 57.050 30.769 0.00 0.00 0.00 4.20
2878 3610 8.826710 ACTCATGTTATGTTGGTTATATTGTCG 58.173 33.333 0.00 0.00 0.00 4.35
2957 3689 7.296628 TGTATGCCCCAAAAATTATACCATC 57.703 36.000 0.00 0.00 0.00 3.51
2973 3705 7.496747 ACCAATGTAATACAAATTGTATGCCC 58.503 34.615 18.15 10.17 42.29 5.36
2985 3717 9.607988 AATCGACAATTCTACCAATGTAATACA 57.392 29.630 0.00 0.00 0.00 2.29
2992 3724 6.765989 TCCCTAAATCGACAATTCTACCAATG 59.234 38.462 0.00 0.00 0.00 2.82
3000 3732 7.307989 CCACATGTATCCCTAAATCGACAATTC 60.308 40.741 0.00 0.00 0.00 2.17
3004 3736 4.742440 GCCACATGTATCCCTAAATCGACA 60.742 45.833 0.00 0.00 0.00 4.35
3007 3739 3.074412 GGCCACATGTATCCCTAAATCG 58.926 50.000 0.00 0.00 0.00 3.34
3020 3752 2.757868 TCCGATTTAAAAGGGCCACATG 59.242 45.455 6.18 0.00 0.00 3.21
3021 3753 3.094484 TCCGATTTAAAAGGGCCACAT 57.906 42.857 6.18 0.00 0.00 3.21
3037 3769 1.980772 GGTCGTCCCTCCTTTCCGA 60.981 63.158 0.00 0.00 0.00 4.55
3038 3770 1.823169 TTGGTCGTCCCTCCTTTCCG 61.823 60.000 0.00 0.00 0.00 4.30
3083 3816 8.375506 TCCATTATCAGTGACAACTTTCTTAGT 58.624 33.333 0.00 0.00 39.32 2.24
3157 3890 0.460284 ACCGGACGAATGCACTCATC 60.460 55.000 9.46 0.00 31.27 2.92
3193 3932 2.446994 AGACCGGGAACACCACCA 60.447 61.111 6.32 0.00 40.22 4.17
3212 3951 5.665381 AAATTACGGTTTTTGTGCAATGG 57.335 34.783 0.00 0.00 0.00 3.16
3242 3981 6.563422 TCCTTTTTGAGACACACATTTTCTG 58.437 36.000 0.00 0.00 0.00 3.02
3272 4011 2.020720 TCATTTCAGCGTGTTGGTGTT 58.979 42.857 0.00 0.00 46.24 3.32
3275 4014 1.333619 GTGTCATTTCAGCGTGTTGGT 59.666 47.619 0.00 0.00 0.00 3.67
3333 4075 3.692690 TGAGGTGCCTAAATAACCCAAC 58.307 45.455 0.00 0.00 34.29 3.77
3350 4092 1.933853 GTACAAGCGGCTTACATGAGG 59.066 52.381 15.93 3.65 0.00 3.86
3363 4108 6.480320 AGATGTTCGGAGATAAATGTACAAGC 59.520 38.462 0.00 0.00 35.04 4.01
3380 4125 7.993821 ACAATACAGTGAATAGAGATGTTCG 57.006 36.000 0.00 0.00 0.00 3.95
3475 4222 3.834231 CCATTTGGGGTTTTCACATCTCT 59.166 43.478 0.00 0.00 0.00 3.10
3498 4245 7.886629 TTTTTCCAGAGATCAATAAGGATGG 57.113 36.000 0.00 0.00 0.00 3.51
3508 4256 6.015918 TGGCCTTTTATTTTTCCAGAGATCA 58.984 36.000 3.32 0.00 0.00 2.92
3628 4380 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3629 4381 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3630 4382 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3631 4383 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3632 4384 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3633 4385 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
3634 4386 1.533299 TCAACACACACACACACACAC 59.467 47.619 0.00 0.00 0.00 3.82
3635 4387 1.884235 TCAACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
3636 4388 2.979401 TTCAACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
3637 4389 3.066760 TGTTTTCAACACACACACACACA 59.933 39.130 0.00 0.00 36.25 3.72
3638 4390 3.633235 TGTTTTCAACACACACACACAC 58.367 40.909 0.00 0.00 36.25 3.82
3639 4391 3.990318 TGTTTTCAACACACACACACA 57.010 38.095 0.00 0.00 36.25 3.72
3651 4403 4.340617 ACCTCTTGGTGAGTTGTTTTCAA 58.659 39.130 0.00 0.00 46.51 2.69
3702 4454 2.869801 CGCTTGAGTCCAACAACTAACA 59.130 45.455 0.00 0.00 0.00 2.41
3802 4559 3.874543 ACGACACAACTGCATGAAAAGTA 59.125 39.130 0.00 0.00 0.00 2.24
3819 4577 9.268268 GATTGATTTATTACCTATCCAACGACA 57.732 33.333 0.00 0.00 0.00 4.35
3843 4601 8.949177 GCCAAAAAGTTTATCATTCCATTTGAT 58.051 29.630 0.00 0.00 37.56 2.57
3911 4671 2.932614 CGGAAGGAGATGCTACAGTTTG 59.067 50.000 0.00 0.00 0.00 2.93
3927 4687 4.488126 TTTCATTTTGAGACAGCGGAAG 57.512 40.909 0.00 0.00 0.00 3.46
4080 5069 8.044060 ACCACAGTGTATCTCATGTAATTTTG 57.956 34.615 0.00 0.00 0.00 2.44
4185 5689 4.687483 CCTGAAATCAATCAAAGTTGCACC 59.313 41.667 0.00 0.00 0.00 5.01
4197 5701 3.593328 TCCCTCTTCCACCTGAAATCAAT 59.407 43.478 0.00 0.00 31.06 2.57
4231 5735 1.040339 GCCTCACGATCTCCTCCACT 61.040 60.000 0.00 0.00 0.00 4.00
4264 5768 2.686816 GCCGTAATGTTGGCGCAGT 61.687 57.895 10.83 0.00 42.22 4.40
4379 5894 7.721286 TGAATTTCTCTCTCAGTTTTCAGAC 57.279 36.000 0.00 0.00 0.00 3.51
4495 6039 1.205655 CTGTGGCTGAGAAATCCTCGA 59.794 52.381 0.00 0.00 44.92 4.04
4619 6167 7.568349 ACTGAAAATCCATACTTAGATGCAGA 58.432 34.615 0.00 0.00 0.00 4.26
4691 6239 4.701765 ACATGACAGGACTGAGATAATGC 58.298 43.478 6.29 0.00 0.00 3.56
4692 6240 6.343703 TCAACATGACAGGACTGAGATAATG 58.656 40.000 6.29 5.02 0.00 1.90
4695 6243 5.481824 AGTTCAACATGACAGGACTGAGATA 59.518 40.000 6.29 0.00 0.00 1.98
4696 6244 4.285517 AGTTCAACATGACAGGACTGAGAT 59.714 41.667 6.29 0.00 0.00 2.75
4698 6246 3.744942 CAGTTCAACATGACAGGACTGAG 59.255 47.826 15.48 0.00 34.90 3.35
4701 6249 3.389329 AGACAGTTCAACATGACAGGACT 59.611 43.478 0.00 0.00 0.00 3.85
4702 6250 3.496130 CAGACAGTTCAACATGACAGGAC 59.504 47.826 0.00 0.00 0.00 3.85
4735 6298 8.461249 AGATCAGACCTAAAATTCATGATTGG 57.539 34.615 0.00 0.00 0.00 3.16
4781 6346 3.118629 TGAGATGCTGGGACTTGTCATAC 60.119 47.826 3.08 0.00 0.00 2.39
4886 6470 5.928839 GCATGTATACCGGGATATGATCATC 59.071 44.000 12.53 0.00 0.00 2.92
4887 6471 5.366477 TGCATGTATACCGGGATATGATCAT 59.634 40.000 10.29 13.81 0.00 2.45
4888 6472 4.714308 TGCATGTATACCGGGATATGATCA 59.286 41.667 10.29 3.20 0.00 2.92
4981 6568 7.771927 ATAAATTAAGAGGGCCAATGAGATG 57.228 36.000 6.18 0.00 0.00 2.90
5044 6631 7.545489 TCTCAATCTCGGATTGATCATATCTG 58.455 38.462 21.74 15.22 37.40 2.90
5237 6824 5.278315 CCGATCATCTGTCTGTATTAACGGA 60.278 44.000 0.00 0.00 38.73 4.69
5239 6826 4.383052 GCCGATCATCTGTCTGTATTAACG 59.617 45.833 0.00 0.00 0.00 3.18
5295 6882 7.643371 TCGATAACGCGTTGTTTAATCATAGTA 59.357 33.333 33.40 9.29 42.09 1.82
5296 6883 6.473131 TCGATAACGCGTTGTTTAATCATAGT 59.527 34.615 33.40 5.06 42.09 2.12
5297 6884 6.859090 TCGATAACGCGTTGTTTAATCATAG 58.141 36.000 33.40 16.20 42.09 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.