Multiple sequence alignment - TraesCS5A01G013600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G013600 chr5A 100.000 2429 0 0 1 2429 9386462 9384034 0.000000e+00 4486.0
1 TraesCS5A01G013600 chr5A 89.065 695 66 6 1087 1775 549201202 549201892 0.000000e+00 854.0
2 TraesCS5A01G013600 chr5A 87.198 703 51 12 405 1101 549200516 549201185 0.000000e+00 763.0
3 TraesCS5A01G013600 chr5A 94.426 305 16 1 109 413 165364957 165365260 3.660000e-128 468.0
4 TraesCS5A01G013600 chr5A 77.049 549 99 16 690 1215 549155109 549155653 8.500000e-75 291.0
5 TraesCS5A01G013600 chr5A 93.204 103 6 1 3 104 549200413 549200515 1.500000e-32 150.0
6 TraesCS5A01G013600 chr5A 90.123 81 7 1 1701 1781 549211630 549211709 1.190000e-18 104.0
7 TraesCS5A01G013600 chr5D 90.779 1399 103 12 405 1781 435263245 435264639 0.000000e+00 1845.0
8 TraesCS5A01G013600 chr5D 89.219 640 59 8 1796 2429 547833906 547833271 0.000000e+00 791.0
9 TraesCS5A01G013600 chr5D 89.043 648 56 8 1796 2429 396441840 396441194 0.000000e+00 789.0
10 TraesCS5A01G013600 chr5D 96.970 99 3 0 6 104 435263146 435263244 1.490000e-37 167.0
11 TraesCS5A01G013600 chr5D 90.123 81 7 1 1701 1781 435270632 435270711 1.190000e-18 104.0
12 TraesCS5A01G013600 chr5D 100.000 32 0 0 26 57 435263103 435263134 2.610000e-05 60.2
13 TraesCS5A01G013600 chr5B 90.302 1392 98 13 405 1785 528574730 528576095 0.000000e+00 1788.0
14 TraesCS5A01G013600 chr5B 79.147 422 68 13 835 1240 528539125 528539542 8.560000e-70 274.0
15 TraesCS5A01G013600 chr5B 85.567 194 23 5 1590 1781 528582646 528582836 5.300000e-47 198.0
16 TraesCS5A01G013600 chr5B 97.980 99 2 0 6 104 528574631 528574729 3.210000e-39 172.0
17 TraesCS5A01G013600 chr1A 91.393 639 48 5 1796 2429 516442297 516441661 0.000000e+00 869.0
18 TraesCS5A01G013600 chr1A 94.754 305 13 3 109 413 510700697 510700396 2.830000e-129 472.0
19 TraesCS5A01G013600 chr1A 95.254 295 14 0 109 403 159523864 159524158 3.660000e-128 468.0
20 TraesCS5A01G013600 chr3D 89.555 651 53 8 1793 2429 607538425 607539074 0.000000e+00 811.0
21 TraesCS5A01G013600 chr2D 88.872 647 61 9 1790 2428 624799547 624798904 0.000000e+00 785.0
22 TraesCS5A01G013600 chr1B 88.584 657 59 10 1787 2429 334677935 334677281 0.000000e+00 784.0
23 TraesCS5A01G013600 chr4D 88.580 648 59 8 1796 2429 107698885 107699531 0.000000e+00 773.0
24 TraesCS5A01G013600 chr1D 88.390 646 59 11 1796 2428 118507518 118506876 0.000000e+00 763.0
25 TraesCS5A01G013600 chr6D 88.784 633 56 8 1811 2429 159799357 159798726 0.000000e+00 761.0
26 TraesCS5A01G013600 chr6D 95.681 301 13 0 108 408 308586218 308585918 3.630000e-133 484.0
27 TraesCS5A01G013600 chr7A 96.296 297 10 1 109 405 645255650 645255945 1.010000e-133 486.0
28 TraesCS5A01G013600 chr7A 95.017 301 12 3 108 407 185196679 185196977 1.020000e-128 470.0
29 TraesCS5A01G013600 chr7A 94.352 301 15 2 108 408 477310121 477309823 6.120000e-126 460.0
30 TraesCS5A01G013600 chr4A 95.000 300 13 2 108 407 518118412 518118115 1.020000e-128 470.0
31 TraesCS5A01G013600 chr2A 93.506 308 16 3 108 414 278464067 278463763 2.850000e-124 455.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G013600 chr5A 9384034 9386462 2428 True 4486.000000 4486 100.000000 1 2429 1 chr5A.!!$R1 2428
1 TraesCS5A01G013600 chr5A 549200413 549201892 1479 False 589.000000 854 89.822333 3 1775 3 chr5A.!!$F4 1772
2 TraesCS5A01G013600 chr5A 549155109 549155653 544 False 291.000000 291 77.049000 690 1215 1 chr5A.!!$F2 525
3 TraesCS5A01G013600 chr5D 547833271 547833906 635 True 791.000000 791 89.219000 1796 2429 1 chr5D.!!$R2 633
4 TraesCS5A01G013600 chr5D 396441194 396441840 646 True 789.000000 789 89.043000 1796 2429 1 chr5D.!!$R1 633
5 TraesCS5A01G013600 chr5D 435263103 435264639 1536 False 690.733333 1845 95.916333 6 1781 3 chr5D.!!$F2 1775
6 TraesCS5A01G013600 chr5B 528574631 528576095 1464 False 980.000000 1788 94.141000 6 1785 2 chr5B.!!$F3 1779
7 TraesCS5A01G013600 chr1A 516441661 516442297 636 True 869.000000 869 91.393000 1796 2429 1 chr1A.!!$R2 633
8 TraesCS5A01G013600 chr3D 607538425 607539074 649 False 811.000000 811 89.555000 1793 2429 1 chr3D.!!$F1 636
9 TraesCS5A01G013600 chr2D 624798904 624799547 643 True 785.000000 785 88.872000 1790 2428 1 chr2D.!!$R1 638
10 TraesCS5A01G013600 chr1B 334677281 334677935 654 True 784.000000 784 88.584000 1787 2429 1 chr1B.!!$R1 642
11 TraesCS5A01G013600 chr4D 107698885 107699531 646 False 773.000000 773 88.580000 1796 2429 1 chr4D.!!$F1 633
12 TraesCS5A01G013600 chr1D 118506876 118507518 642 True 763.000000 763 88.390000 1796 2428 1 chr1D.!!$R1 632
13 TraesCS5A01G013600 chr6D 159798726 159799357 631 True 761.000000 761 88.784000 1811 2429 1 chr6D.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 162 0.107165 GCGATAGGCCTCCTTTGGTT 60.107 55.0 9.68 0.00 34.61 3.67 F
657 712 0.530744 CAAGATGCATGCACAAGGCT 59.469 50.0 25.37 12.39 45.15 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1252 1364 0.033699 GGCAGCTTGATCCCTCCTTT 60.034 55.0 0.0 0.0 0.00 3.11 R
2196 2335 0.326048 CTCCTCACTGGTCCCTCCAT 60.326 60.0 0.0 0.0 46.12 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 144 5.104982 TCCCCATCAAACCTAATCAAAATGC 60.105 40.000 0.00 0.00 0.00 3.56
105 145 4.805192 CCCATCAAACCTAATCAAAATGCG 59.195 41.667 0.00 0.00 0.00 4.73
106 146 5.394005 CCCATCAAACCTAATCAAAATGCGA 60.394 40.000 0.00 0.00 0.00 5.10
107 147 6.275335 CCATCAAACCTAATCAAAATGCGAT 58.725 36.000 0.00 0.00 0.00 4.58
108 148 7.424803 CCATCAAACCTAATCAAAATGCGATA 58.575 34.615 0.00 0.00 0.00 2.92
109 149 7.592533 CCATCAAACCTAATCAAAATGCGATAG 59.407 37.037 0.00 0.00 0.00 2.08
110 150 7.026631 TCAAACCTAATCAAAATGCGATAGG 57.973 36.000 0.00 0.00 0.00 2.57
111 151 5.438761 AACCTAATCAAAATGCGATAGGC 57.561 39.130 0.00 0.00 43.96 3.93
112 152 3.821033 ACCTAATCAAAATGCGATAGGCC 59.179 43.478 0.00 0.00 42.61 5.19
113 153 4.074970 CCTAATCAAAATGCGATAGGCCT 58.925 43.478 11.78 11.78 42.61 5.19
114 154 4.154918 CCTAATCAAAATGCGATAGGCCTC 59.845 45.833 9.68 0.00 42.61 4.70
115 155 1.967319 TCAAAATGCGATAGGCCTCC 58.033 50.000 9.68 0.70 42.61 4.30
116 156 1.490490 TCAAAATGCGATAGGCCTCCT 59.510 47.619 9.68 0.00 42.61 3.69
117 157 2.092429 TCAAAATGCGATAGGCCTCCTT 60.092 45.455 9.68 0.00 42.61 3.36
118 158 2.689983 CAAAATGCGATAGGCCTCCTTT 59.310 45.455 9.68 0.00 42.61 3.11
119 159 1.972872 AATGCGATAGGCCTCCTTTG 58.027 50.000 9.68 0.07 42.61 2.77
120 160 0.109342 ATGCGATAGGCCTCCTTTGG 59.891 55.000 9.68 0.00 42.61 3.28
121 161 1.271840 TGCGATAGGCCTCCTTTGGT 61.272 55.000 9.68 0.00 42.61 3.67
122 162 0.107165 GCGATAGGCCTCCTTTGGTT 60.107 55.000 9.68 0.00 34.61 3.67
123 163 1.682087 GCGATAGGCCTCCTTTGGTTT 60.682 52.381 9.68 0.00 34.61 3.27
124 164 2.017049 CGATAGGCCTCCTTTGGTTTG 58.983 52.381 9.68 0.00 34.61 2.93
125 165 2.618045 CGATAGGCCTCCTTTGGTTTGT 60.618 50.000 9.68 0.00 34.61 2.83
126 166 3.370103 CGATAGGCCTCCTTTGGTTTGTA 60.370 47.826 9.68 0.00 34.61 2.41
127 167 2.586648 AGGCCTCCTTTGGTTTGTAG 57.413 50.000 0.00 0.00 0.00 2.74
128 168 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
129 169 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
130 170 2.490168 GGCCTCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 37.61 3.36
131 171 3.431415 GCCTCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 37.61 3.01
132 172 3.444034 GCCTCCTTTGGTTTGTAGGAATC 59.556 47.826 0.00 0.00 37.61 2.52
133 173 4.811063 GCCTCCTTTGGTTTGTAGGAATCT 60.811 45.833 0.00 0.00 37.61 2.40
134 174 4.944317 CCTCCTTTGGTTTGTAGGAATCTC 59.056 45.833 0.00 0.00 37.61 2.75
135 175 5.514834 CCTCCTTTGGTTTGTAGGAATCTCA 60.515 44.000 0.00 0.00 37.61 3.27
136 176 6.139679 TCCTTTGGTTTGTAGGAATCTCAT 57.860 37.500 0.00 0.00 35.20 2.90
137 177 7.265599 TCCTTTGGTTTGTAGGAATCTCATA 57.734 36.000 0.00 0.00 35.20 2.15
138 178 7.338710 TCCTTTGGTTTGTAGGAATCTCATAG 58.661 38.462 0.00 0.00 35.20 2.23
139 179 7.182026 TCCTTTGGTTTGTAGGAATCTCATAGA 59.818 37.037 0.00 0.00 35.20 1.98
140 180 7.829211 CCTTTGGTTTGTAGGAATCTCATAGAA 59.171 37.037 0.00 0.00 0.00 2.10
141 181 9.401058 CTTTGGTTTGTAGGAATCTCATAGAAT 57.599 33.333 0.00 0.00 0.00 2.40
142 182 9.753674 TTTGGTTTGTAGGAATCTCATAGAATT 57.246 29.630 0.00 0.00 0.00 2.17
143 183 9.753674 TTGGTTTGTAGGAATCTCATAGAATTT 57.246 29.630 0.00 0.00 0.00 1.82
144 184 9.396022 TGGTTTGTAGGAATCTCATAGAATTTC 57.604 33.333 0.00 0.00 0.00 2.17
145 185 9.620259 GGTTTGTAGGAATCTCATAGAATTTCT 57.380 33.333 4.03 4.03 0.00 2.52
186 226 4.623932 GGAAAATTTCCTTTGAAGCCCT 57.376 40.909 17.01 0.00 46.57 5.19
187 227 4.973168 GGAAAATTTCCTTTGAAGCCCTT 58.027 39.130 17.01 0.00 46.57 3.95
188 228 5.376625 GGAAAATTTCCTTTGAAGCCCTTT 58.623 37.500 17.01 0.00 46.57 3.11
189 229 5.239306 GGAAAATTTCCTTTGAAGCCCTTTG 59.761 40.000 17.01 0.00 46.57 2.77
190 230 4.356405 AATTTCCTTTGAAGCCCTTTGG 57.644 40.909 0.00 0.00 0.00 3.28
191 231 2.470057 TTCCTTTGAAGCCCTTTGGT 57.530 45.000 0.00 0.00 0.00 3.67
192 232 2.470057 TCCTTTGAAGCCCTTTGGTT 57.530 45.000 0.00 0.00 37.39 3.67
193 233 2.758130 TCCTTTGAAGCCCTTTGGTTT 58.242 42.857 0.00 0.00 37.85 3.27
194 234 2.433970 TCCTTTGAAGCCCTTTGGTTTG 59.566 45.455 0.00 0.00 34.87 2.93
195 235 2.170397 CCTTTGAAGCCCTTTGGTTTGT 59.830 45.455 0.00 0.00 34.87 2.83
196 236 3.386402 CCTTTGAAGCCCTTTGGTTTGTA 59.614 43.478 0.00 0.00 34.87 2.41
197 237 4.501400 CCTTTGAAGCCCTTTGGTTTGTAG 60.501 45.833 0.00 0.00 34.87 2.74
198 238 2.593026 TGAAGCCCTTTGGTTTGTAGG 58.407 47.619 0.00 0.00 34.87 3.18
199 239 2.175931 TGAAGCCCTTTGGTTTGTAGGA 59.824 45.455 0.00 0.00 34.87 2.94
200 240 3.227614 GAAGCCCTTTGGTTTGTAGGAA 58.772 45.455 0.00 0.00 34.87 3.36
201 241 3.542969 AGCCCTTTGGTTTGTAGGAAT 57.457 42.857 0.00 0.00 0.00 3.01
202 242 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
203 243 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
204 244 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
205 245 4.352893 CCCTTTGGTTTGTAGGAATGGAT 58.647 43.478 0.00 0.00 0.00 3.41
206 246 4.777366 CCCTTTGGTTTGTAGGAATGGATT 59.223 41.667 0.00 0.00 0.00 3.01
207 247 5.105351 CCCTTTGGTTTGTAGGAATGGATTC 60.105 44.000 0.00 0.00 36.08 2.52
249 289 6.284891 GGAATCAATCCTTCACATTTTGGA 57.715 37.500 0.00 0.00 45.56 3.53
250 290 6.700352 GGAATCAATCCTTCACATTTTGGAA 58.300 36.000 0.00 0.00 45.56 3.53
251 291 7.333323 GGAATCAATCCTTCACATTTTGGAAT 58.667 34.615 0.00 0.00 45.56 3.01
252 292 7.279313 GGAATCAATCCTTCACATTTTGGAATG 59.721 37.037 0.00 0.00 45.56 2.67
253 293 6.914654 TCAATCCTTCACATTTTGGAATGA 57.085 33.333 6.17 0.00 44.37 2.57
254 294 7.300556 TCAATCCTTCACATTTTGGAATGAA 57.699 32.000 6.17 0.00 44.37 2.57
255 295 7.733969 TCAATCCTTCACATTTTGGAATGAAA 58.266 30.769 6.17 0.57 44.37 2.69
256 296 8.209584 TCAATCCTTCACATTTTGGAATGAAAA 58.790 29.630 6.17 0.00 44.37 2.29
257 297 8.838365 CAATCCTTCACATTTTGGAATGAAAAA 58.162 29.630 6.17 0.00 44.37 1.94
280 320 8.635765 AAAAACATTAGCTAAGACTCAATGGA 57.364 30.769 12.54 0.00 32.20 3.41
281 321 8.635765 AAAACATTAGCTAAGACTCAATGGAA 57.364 30.769 12.54 0.00 32.20 3.53
282 322 8.635765 AAACATTAGCTAAGACTCAATGGAAA 57.364 30.769 12.54 0.00 32.20 3.13
283 323 8.635765 AACATTAGCTAAGACTCAATGGAAAA 57.364 30.769 12.54 0.00 32.20 2.29
284 324 8.635765 ACATTAGCTAAGACTCAATGGAAAAA 57.364 30.769 12.54 0.00 32.20 1.94
285 325 9.247861 ACATTAGCTAAGACTCAATGGAAAAAT 57.752 29.630 12.54 0.00 32.20 1.82
302 342 7.765695 GGAAAAATTCCTATCCTATGCATCA 57.234 36.000 0.19 0.00 46.57 3.07
303 343 8.181904 GGAAAAATTCCTATCCTATGCATCAA 57.818 34.615 0.19 0.00 46.57 2.57
304 344 8.641541 GGAAAAATTCCTATCCTATGCATCAAA 58.358 33.333 0.19 0.00 46.57 2.69
306 346 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
307 347 8.945195 AAATTCCTATCCTATGCATCAAATGA 57.055 30.769 0.19 0.00 0.00 2.57
308 348 9.543231 AAATTCCTATCCTATGCATCAAATGAT 57.457 29.630 0.19 2.17 34.56 2.45
311 351 9.842775 TTCCTATCCTATGCATCAAATGATATC 57.157 33.333 0.19 0.00 32.63 1.63
312 352 9.222098 TCCTATCCTATGCATCAAATGATATCT 57.778 33.333 0.19 0.00 32.63 1.98
313 353 9.491675 CCTATCCTATGCATCAAATGATATCTC 57.508 37.037 0.19 0.00 32.63 2.75
316 356 9.976776 ATCCTATGCATCAAATGATATCTCTTT 57.023 29.630 0.19 1.54 32.63 2.52
317 357 9.445878 TCCTATGCATCAAATGATATCTCTTTC 57.554 33.333 0.19 0.00 32.63 2.62
318 358 9.451002 CCTATGCATCAAATGATATCTCTTTCT 57.549 33.333 0.19 0.00 32.63 2.52
347 387 7.904558 AGGAAGTAAGATACATGTCATCTCA 57.095 36.000 0.00 0.00 31.45 3.27
348 388 7.721402 AGGAAGTAAGATACATGTCATCTCAC 58.279 38.462 0.00 6.11 31.45 3.51
349 389 7.563188 AGGAAGTAAGATACATGTCATCTCACT 59.437 37.037 0.00 8.26 33.23 3.41
350 390 8.200792 GGAAGTAAGATACATGTCATCTCACTT 58.799 37.037 21.53 21.53 41.62 3.16
351 391 9.243637 GAAGTAAGATACATGTCATCTCACTTC 57.756 37.037 25.68 25.68 44.57 3.01
352 392 7.721402 AGTAAGATACATGTCATCTCACTTCC 58.279 38.462 0.00 0.00 28.26 3.46
353 393 6.805016 AAGATACATGTCATCTCACTTCCT 57.195 37.500 0.00 0.00 31.45 3.36
354 394 7.904558 AAGATACATGTCATCTCACTTCCTA 57.095 36.000 0.00 0.00 31.45 2.94
355 395 8.489676 AAGATACATGTCATCTCACTTCCTAT 57.510 34.615 0.00 0.00 31.45 2.57
356 396 7.894708 AGATACATGTCATCTCACTTCCTATG 58.105 38.462 0.00 0.00 0.00 2.23
357 397 7.727634 AGATACATGTCATCTCACTTCCTATGA 59.272 37.037 0.00 0.00 0.00 2.15
358 398 6.744175 ACATGTCATCTCACTTCCTATGAT 57.256 37.500 0.00 0.00 31.49 2.45
359 399 7.134362 ACATGTCATCTCACTTCCTATGATT 57.866 36.000 0.00 0.00 31.49 2.57
360 400 7.571919 ACATGTCATCTCACTTCCTATGATTT 58.428 34.615 0.00 0.00 31.49 2.17
361 401 8.051535 ACATGTCATCTCACTTCCTATGATTTT 58.948 33.333 0.00 0.00 31.49 1.82
362 402 8.557864 CATGTCATCTCACTTCCTATGATTTTC 58.442 37.037 0.00 0.00 31.49 2.29
363 403 7.050377 TGTCATCTCACTTCCTATGATTTTCC 58.950 38.462 0.00 0.00 31.49 3.13
364 404 7.092712 TGTCATCTCACTTCCTATGATTTTCCT 60.093 37.037 0.00 0.00 31.49 3.36
365 405 8.424918 GTCATCTCACTTCCTATGATTTTCCTA 58.575 37.037 0.00 0.00 31.49 2.94
366 406 9.163894 TCATCTCACTTCCTATGATTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
367 407 9.790344 CATCTCACTTCCTATGATTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
369 409 8.432805 TCTCACTTCCTATGATTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
370 410 8.337118 TCACTTCCTATGATTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
371 411 9.447279 TCACTTCCTATGATTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
399 439 9.753674 AACATTCTTATCCTATGAACCAAAAGA 57.246 29.630 0.00 0.00 0.00 2.52
400 440 9.401058 ACATTCTTATCCTATGAACCAAAAGAG 57.599 33.333 0.00 0.00 0.00 2.85
401 441 8.844244 CATTCTTATCCTATGAACCAAAAGAGG 58.156 37.037 0.00 0.00 0.00 3.69
402 442 6.357367 TCTTATCCTATGAACCAAAAGAGGC 58.643 40.000 0.00 0.00 0.00 4.70
403 443 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
631 686 4.871871 TGTAGCCCATCCATAAAAAGGA 57.128 40.909 0.00 0.00 39.97 3.36
646 701 1.002069 AAGGATGGACCCAAGATGCA 58.998 50.000 0.00 0.00 40.05 3.96
657 712 0.530744 CAAGATGCATGCACAAGGCT 59.469 50.000 25.37 12.39 45.15 4.58
853 922 2.672996 CGTGGCCTTGTCCCCTTG 60.673 66.667 3.32 0.00 0.00 3.61
881 950 0.770499 TCAATGGCACTTGACAGGGA 59.230 50.000 7.85 0.00 35.91 4.20
1079 1160 1.449778 GGAGGAAGCGGCTTACCAC 60.450 63.158 21.05 17.41 34.57 4.16
1080 1161 1.295423 GAGGAAGCGGCTTACCACA 59.705 57.895 21.05 0.00 34.57 4.17
1096 1208 1.135257 CCACAACGGCAACAACAGAAA 60.135 47.619 0.00 0.00 0.00 2.52
1102 1214 2.552315 ACGGCAACAACAGAAATCGAAT 59.448 40.909 0.00 0.00 0.00 3.34
1243 1355 2.092861 TCCGAAGAGGTGTTTGGTTTCA 60.093 45.455 0.00 0.00 41.99 2.69
1245 1357 2.286184 CGAAGAGGTGTTTGGTTTCACG 60.286 50.000 0.00 0.00 35.67 4.35
1251 1363 1.299850 GTTTGGTTTCACGGGCAGC 60.300 57.895 0.00 0.00 0.00 5.25
1252 1364 1.754621 TTTGGTTTCACGGGCAGCA 60.755 52.632 0.00 0.00 0.00 4.41
1341 1453 1.446791 CTCTGCTGAGATGGAGGCC 59.553 63.158 15.04 0.00 42.73 5.19
1366 1478 2.481441 TCCTTAGCTCCATGGTGATGT 58.519 47.619 17.98 3.77 0.00 3.06
1436 1548 7.744087 TTGTCTGTAGTTGCTAATTGTCATT 57.256 32.000 0.00 0.00 0.00 2.57
1502 1614 4.815308 CAGGAAAGAGGATGTTCTATGCAG 59.185 45.833 0.00 0.00 0.00 4.41
1506 1618 4.935352 AGAGGATGTTCTATGCAGAGAC 57.065 45.455 11.33 7.22 30.73 3.36
1528 1640 7.882179 AGACTTTTAGTTTTGCAACCGATTAT 58.118 30.769 0.00 0.00 32.70 1.28
1529 1641 8.021396 AGACTTTTAGTTTTGCAACCGATTATC 58.979 33.333 0.00 0.00 32.70 1.75
1530 1642 6.799925 ACTTTTAGTTTTGCAACCGATTATCG 59.200 34.615 7.74 7.74 40.07 2.92
1560 1677 4.610605 TTACAAACATCGTTCCTCCAGA 57.389 40.909 0.00 0.00 0.00 3.86
1573 1690 9.976776 ATCGTTCCTCCAGAGTATATATTTCTA 57.023 33.333 0.00 0.00 0.00 2.10
1614 1731 5.007332 GTCGCTTTTAGGACTTGAACAGAAA 59.993 40.000 0.00 0.00 0.00 2.52
1616 1733 5.909610 CGCTTTTAGGACTTGAACAGAAAAG 59.090 40.000 0.00 0.00 36.15 2.27
1619 1736 7.630728 GCTTTTAGGACTTGAACAGAAAAGGTT 60.631 37.037 0.00 0.00 34.51 3.50
1643 1760 8.717821 GTTAACATATTCTTCTGCACAGTTACA 58.282 33.333 0.00 0.00 0.00 2.41
1655 1772 2.027745 CACAGTTACATGGCCTCAGACT 60.028 50.000 3.32 0.00 0.00 3.24
1755 1874 4.615513 TCCCCCAATTTGATAAATCCGTT 58.384 39.130 0.00 0.00 0.00 4.44
1775 1894 9.635404 ATCCGTTCAAATGGGATTTACTAATAA 57.365 29.630 1.25 0.00 37.26 1.40
1784 1903 9.660544 AATGGGATTTACTAATAAAATGCTCCT 57.339 29.630 0.00 0.00 35.64 3.69
1785 1904 8.691661 TGGGATTTACTAATAAAATGCTCCTC 57.308 34.615 0.00 0.00 35.64 3.71
1786 1905 7.724061 TGGGATTTACTAATAAAATGCTCCTCC 59.276 37.037 0.00 0.00 35.64 4.30
1787 1906 7.176865 GGGATTTACTAATAAAATGCTCCTCCC 59.823 40.741 0.00 0.00 34.66 4.30
1788 1907 7.176865 GGATTTACTAATAAAATGCTCCTCCCC 59.823 40.741 0.00 0.00 33.98 4.81
1800 1920 4.505970 CTCCCCTCCCCTCCCCTG 62.506 77.778 0.00 0.00 0.00 4.45
2220 2359 1.079490 AGGGACCAGTGAGGAGATGAA 59.921 52.381 0.00 0.00 41.22 2.57
2273 2412 3.883744 CTTCGTGGCAAGGCTCCGT 62.884 63.158 0.00 0.00 0.00 4.69
2289 2428 2.032681 GTTCGGTTCCAGCCAGCT 59.967 61.111 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.176910 GGCCTACCTGACTTCTCAGC 59.823 60.000 0.00 0.00 42.55 4.26
4 5 4.755266 TTAATGGCCTACCTGACTTCTC 57.245 45.455 3.32 0.00 36.63 2.87
59 99 5.414454 GGGACTACATTAACTGATGCAACAA 59.586 40.000 0.00 0.00 0.00 2.83
104 144 2.017049 CAAACCAAAGGAGGCCTATCG 58.983 52.381 4.42 0.00 31.13 2.92
105 145 3.087370 ACAAACCAAAGGAGGCCTATC 57.913 47.619 4.42 0.15 31.13 2.08
106 146 3.053619 CCTACAAACCAAAGGAGGCCTAT 60.054 47.826 4.42 0.00 31.13 2.57
107 147 2.307686 CCTACAAACCAAAGGAGGCCTA 59.692 50.000 4.42 0.00 31.13 3.93
108 148 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
109 149 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
110 150 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
111 151 4.923415 AGATTCCTACAAACCAAAGGAGG 58.077 43.478 0.00 0.00 40.43 4.30
112 152 5.560724 TGAGATTCCTACAAACCAAAGGAG 58.439 41.667 0.00 0.00 40.43 3.69
113 153 5.576563 TGAGATTCCTACAAACCAAAGGA 57.423 39.130 0.00 0.00 37.64 3.36
114 154 7.338710 TCTATGAGATTCCTACAAACCAAAGG 58.661 38.462 0.00 0.00 0.00 3.11
115 155 8.792830 TTCTATGAGATTCCTACAAACCAAAG 57.207 34.615 0.00 0.00 0.00 2.77
116 156 9.753674 AATTCTATGAGATTCCTACAAACCAAA 57.246 29.630 0.00 0.00 0.00 3.28
117 157 9.753674 AAATTCTATGAGATTCCTACAAACCAA 57.246 29.630 0.00 0.00 0.00 3.67
118 158 9.396022 GAAATTCTATGAGATTCCTACAAACCA 57.604 33.333 0.00 0.00 0.00 3.67
119 159 9.620259 AGAAATTCTATGAGATTCCTACAAACC 57.380 33.333 0.00 0.00 0.00 3.27
165 205 9.962289 ACCAAAGGGCTTCAAAGGAAATTTTCC 62.962 40.741 18.71 18.71 44.02 3.13
166 206 5.239306 CCAAAGGGCTTCAAAGGAAATTTTC 59.761 40.000 0.24 0.24 31.35 2.29
167 207 5.132502 CCAAAGGGCTTCAAAGGAAATTTT 58.867 37.500 0.00 0.00 31.35 1.82
168 208 4.165950 ACCAAAGGGCTTCAAAGGAAATTT 59.834 37.500 0.00 0.00 37.90 1.82
169 209 3.716353 ACCAAAGGGCTTCAAAGGAAATT 59.284 39.130 0.00 0.00 37.90 1.82
170 210 3.317406 ACCAAAGGGCTTCAAAGGAAAT 58.683 40.909 0.00 0.00 37.90 2.17
171 211 2.758130 ACCAAAGGGCTTCAAAGGAAA 58.242 42.857 0.00 0.00 37.90 3.13
172 212 2.470057 ACCAAAGGGCTTCAAAGGAA 57.530 45.000 0.00 0.00 37.90 3.36
173 213 2.433970 CAAACCAAAGGGCTTCAAAGGA 59.566 45.455 0.00 0.00 37.90 3.36
174 214 2.170397 ACAAACCAAAGGGCTTCAAAGG 59.830 45.455 0.00 0.00 37.90 3.11
175 215 3.541996 ACAAACCAAAGGGCTTCAAAG 57.458 42.857 0.00 0.00 37.90 2.77
176 216 3.386402 CCTACAAACCAAAGGGCTTCAAA 59.614 43.478 0.00 0.00 37.90 2.69
177 217 2.962421 CCTACAAACCAAAGGGCTTCAA 59.038 45.455 0.00 0.00 37.90 2.69
178 218 2.175931 TCCTACAAACCAAAGGGCTTCA 59.824 45.455 0.00 0.00 37.90 3.02
179 219 2.871453 TCCTACAAACCAAAGGGCTTC 58.129 47.619 0.00 0.00 37.90 3.86
180 220 3.322191 TTCCTACAAACCAAAGGGCTT 57.678 42.857 0.00 0.00 37.90 4.35
181 221 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
182 222 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
183 223 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
184 224 5.965922 GAATCCATTCCTACAAACCAAAGG 58.034 41.667 0.00 0.00 0.00 3.11
226 266 6.284891 TCCAAAATGTGAAGGATTGATTCC 57.715 37.500 0.00 0.00 45.85 3.01
227 267 8.036575 TCATTCCAAAATGTGAAGGATTGATTC 58.963 33.333 0.00 0.00 42.46 2.52
228 268 7.909518 TCATTCCAAAATGTGAAGGATTGATT 58.090 30.769 0.00 0.00 42.46 2.57
229 269 7.484993 TCATTCCAAAATGTGAAGGATTGAT 57.515 32.000 0.00 0.00 42.46 2.57
230 270 6.914654 TCATTCCAAAATGTGAAGGATTGA 57.085 33.333 0.00 0.00 42.46 2.57
231 271 7.966246 TTTCATTCCAAAATGTGAAGGATTG 57.034 32.000 0.00 0.00 42.46 2.67
232 272 8.977267 TTTTTCATTCCAAAATGTGAAGGATT 57.023 26.923 0.00 0.00 42.46 3.01
255 295 8.635765 TCCATTGAGTCTTAGCTAATGTTTTT 57.364 30.769 6.64 0.00 0.00 1.94
256 296 8.635765 TTCCATTGAGTCTTAGCTAATGTTTT 57.364 30.769 6.64 0.00 0.00 2.43
257 297 8.635765 TTTCCATTGAGTCTTAGCTAATGTTT 57.364 30.769 6.64 0.00 0.00 2.83
258 298 8.635765 TTTTCCATTGAGTCTTAGCTAATGTT 57.364 30.769 6.64 0.00 0.00 2.71
259 299 8.635765 TTTTTCCATTGAGTCTTAGCTAATGT 57.364 30.769 6.64 0.00 0.00 2.71
280 320 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
281 321 9.370930 TCATTTGATGCATAGGATAGGAATTTT 57.629 29.630 0.00 0.00 0.00 1.82
282 322 8.945195 TCATTTGATGCATAGGATAGGAATTT 57.055 30.769 0.00 0.00 0.00 1.82
285 325 9.842775 GATATCATTTGATGCATAGGATAGGAA 57.157 33.333 0.00 0.00 36.05 3.36
286 326 9.222098 AGATATCATTTGATGCATAGGATAGGA 57.778 33.333 0.00 0.00 36.05 2.94
287 327 9.491675 GAGATATCATTTGATGCATAGGATAGG 57.508 37.037 0.00 0.00 36.05 2.57
290 330 9.976776 AAAGAGATATCATTTGATGCATAGGAT 57.023 29.630 0.00 0.00 36.05 3.24
291 331 9.445878 GAAAGAGATATCATTTGATGCATAGGA 57.554 33.333 0.00 0.00 36.05 2.94
292 332 9.451002 AGAAAGAGATATCATTTGATGCATAGG 57.549 33.333 0.00 0.00 36.05 2.57
321 361 9.593565 TGAGATGACATGTATCTTACTTCCTAT 57.406 33.333 14.85 0.00 35.14 2.57
322 362 8.851145 GTGAGATGACATGTATCTTACTTCCTA 58.149 37.037 20.50 2.04 37.85 2.94
323 363 7.563188 AGTGAGATGACATGTATCTTACTTCCT 59.437 37.037 22.59 11.44 44.33 3.36
324 364 7.721402 AGTGAGATGACATGTATCTTACTTCC 58.279 38.462 22.59 11.15 44.33 3.46
327 367 7.563188 AGGAAGTGAGATGACATGTATCTTACT 59.437 37.037 22.59 22.59 46.90 2.24
328 368 7.721402 AGGAAGTGAGATGACATGTATCTTAC 58.279 38.462 20.35 20.35 39.87 2.34
329 369 7.904558 AGGAAGTGAGATGACATGTATCTTA 57.095 36.000 14.85 10.45 35.14 2.10
330 370 6.805016 AGGAAGTGAGATGACATGTATCTT 57.195 37.500 14.85 0.00 35.14 2.40
331 371 7.727634 TCATAGGAAGTGAGATGACATGTATCT 59.272 37.037 14.05 14.05 37.59 1.98
332 372 7.890515 TCATAGGAAGTGAGATGACATGTATC 58.109 38.462 0.00 2.87 0.00 2.24
333 373 7.846101 TCATAGGAAGTGAGATGACATGTAT 57.154 36.000 0.00 0.00 0.00 2.29
334 374 7.846101 ATCATAGGAAGTGAGATGACATGTA 57.154 36.000 0.00 0.00 31.41 2.29
335 375 6.744175 ATCATAGGAAGTGAGATGACATGT 57.256 37.500 0.00 0.00 31.41 3.21
336 376 8.447924 AAAATCATAGGAAGTGAGATGACATG 57.552 34.615 0.00 0.00 31.41 3.21
337 377 7.718753 GGAAAATCATAGGAAGTGAGATGACAT 59.281 37.037 0.00 0.00 31.41 3.06
338 378 7.050377 GGAAAATCATAGGAAGTGAGATGACA 58.950 38.462 0.00 0.00 31.41 3.58
339 379 7.278875 AGGAAAATCATAGGAAGTGAGATGAC 58.721 38.462 0.00 0.00 31.41 3.06
340 380 7.443302 AGGAAAATCATAGGAAGTGAGATGA 57.557 36.000 0.00 0.00 33.09 2.92
341 381 9.790344 AATAGGAAAATCATAGGAAGTGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
343 383 8.432805 GGAATAGGAAAATCATAGGAAGTGAGA 58.567 37.037 0.00 0.00 0.00 3.27
344 384 8.435982 AGGAATAGGAAAATCATAGGAAGTGAG 58.564 37.037 0.00 0.00 0.00 3.51
345 385 8.337118 AGGAATAGGAAAATCATAGGAAGTGA 57.663 34.615 0.00 0.00 0.00 3.41
373 413 9.753674 TCTTTTGGTTCATAGGATAAGAATGTT 57.246 29.630 0.00 0.00 30.42 2.71
374 414 9.401058 CTCTTTTGGTTCATAGGATAAGAATGT 57.599 33.333 0.00 0.00 30.42 2.71
375 415 8.844244 CCTCTTTTGGTTCATAGGATAAGAATG 58.156 37.037 0.00 0.00 30.42 2.67
376 416 7.503902 GCCTCTTTTGGTTCATAGGATAAGAAT 59.496 37.037 0.00 0.00 30.42 2.40
377 417 6.828785 GCCTCTTTTGGTTCATAGGATAAGAA 59.171 38.462 0.00 0.00 0.00 2.52
378 418 6.357367 GCCTCTTTTGGTTCATAGGATAAGA 58.643 40.000 0.00 0.00 0.00 2.10
379 419 5.532779 GGCCTCTTTTGGTTCATAGGATAAG 59.467 44.000 0.00 0.00 0.00 1.73
380 420 5.193728 AGGCCTCTTTTGGTTCATAGGATAA 59.806 40.000 0.00 0.00 0.00 1.75
381 421 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
382 422 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
383 423 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
384 424 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
385 425 6.603201 TCATTAAGGCCTCTTTTGGTTCATAG 59.397 38.462 5.23 0.00 34.59 2.23
386 426 6.489603 TCATTAAGGCCTCTTTTGGTTCATA 58.510 36.000 5.23 0.00 34.59 2.15
387 427 5.332743 TCATTAAGGCCTCTTTTGGTTCAT 58.667 37.500 5.23 0.00 34.59 2.57
388 428 4.735369 TCATTAAGGCCTCTTTTGGTTCA 58.265 39.130 5.23 0.00 34.59 3.18
389 429 5.921962 ATCATTAAGGCCTCTTTTGGTTC 57.078 39.130 5.23 0.00 34.59 3.62
390 430 6.466812 CAAATCATTAAGGCCTCTTTTGGTT 58.533 36.000 5.23 1.30 34.59 3.67
391 431 5.569428 GCAAATCATTAAGGCCTCTTTTGGT 60.569 40.000 5.23 0.00 34.59 3.67
392 432 4.872124 GCAAATCATTAAGGCCTCTTTTGG 59.128 41.667 5.23 0.00 34.59 3.28
393 433 5.481105 TGCAAATCATTAAGGCCTCTTTTG 58.519 37.500 5.23 11.08 34.59 2.44
394 434 5.743636 TGCAAATCATTAAGGCCTCTTTT 57.256 34.783 5.23 0.00 34.59 2.27
395 435 5.945144 ATGCAAATCATTAAGGCCTCTTT 57.055 34.783 5.23 0.00 34.59 2.52
396 436 5.945144 AATGCAAATCATTAAGGCCTCTT 57.055 34.783 5.23 0.00 43.24 2.85
559 614 6.259550 GTGAAACTGTCAAGGATTTGCTAT 57.740 37.500 0.00 0.00 38.23 2.97
624 679 2.833943 GCATCTTGGGTCCATCCTTTTT 59.166 45.455 0.00 0.00 36.25 1.94
631 686 0.032912 TGCATGCATCTTGGGTCCAT 60.033 50.000 18.46 0.00 0.00 3.41
646 701 0.316204 GCAGACAAAGCCTTGTGCAT 59.684 50.000 5.18 0.00 45.98 3.96
657 712 4.705991 TGCAATGAGATATTGGCAGACAAA 59.294 37.500 0.00 0.00 43.46 2.83
796 865 4.194640 GCTGCAAGAGGATCAGTGAAATA 58.805 43.478 0.00 0.00 37.82 1.40
802 871 2.366533 CAATGCTGCAAGAGGATCAGT 58.633 47.619 6.36 0.00 37.82 3.41
830 899 1.228154 GGACAAGGCCACGAGGTTT 60.228 57.895 5.01 0.00 37.19 3.27
853 922 1.117150 AGTGCCATTGATGATTGGGC 58.883 50.000 0.00 0.00 44.82 5.36
881 950 9.784531 CCAATAATTTATAGCTCGGGATATGAT 57.215 33.333 2.60 0.00 0.00 2.45
903 982 3.181434 TGTTTTGAGGCTACTGGACCAAT 60.181 43.478 0.00 0.00 0.00 3.16
985 1064 5.175491 CGTTGATCATGGTTGGTTCTTTTTG 59.825 40.000 0.00 0.00 0.00 2.44
1079 1160 2.043411 CGATTTCTGTTGTTGCCGTTG 58.957 47.619 0.00 0.00 0.00 4.10
1080 1161 1.944024 TCGATTTCTGTTGTTGCCGTT 59.056 42.857 0.00 0.00 0.00 4.44
1096 1208 1.089920 GCTGTTGAGCACCATTCGAT 58.910 50.000 0.00 0.00 45.46 3.59
1188 1300 0.317160 CACTGAAGACCACCGTGCTA 59.683 55.000 0.00 0.00 0.00 3.49
1243 1355 4.351054 CCCTCCTTTGCTGCCCGT 62.351 66.667 0.00 0.00 0.00 5.28
1245 1357 1.454663 GATCCCTCCTTTGCTGCCC 60.455 63.158 0.00 0.00 0.00 5.36
1251 1363 1.101331 GCAGCTTGATCCCTCCTTTG 58.899 55.000 0.00 0.00 0.00 2.77
1252 1364 0.033699 GGCAGCTTGATCCCTCCTTT 60.034 55.000 0.00 0.00 0.00 3.11
1320 1432 1.446791 CTCCATCTCAGCAGAGGCC 59.553 63.158 6.25 0.00 42.34 5.19
1341 1453 1.066143 ACCATGGAGCTAAGGAACACG 60.066 52.381 21.47 0.00 0.00 4.49
1366 1478 2.041701 TGGAGCTGCATAGTAGCATGA 58.958 47.619 2.72 0.00 44.68 3.07
1467 1579 4.844085 TCCTCTTTCCTGTTTCCTACATCA 59.156 41.667 0.00 0.00 35.85 3.07
1502 1614 5.164606 TCGGTTGCAAAACTAAAAGTCTC 57.835 39.130 0.00 0.00 0.00 3.36
1506 1618 7.192676 CGATAATCGGTTGCAAAACTAAAAG 57.807 36.000 0.00 0.00 36.00 2.27
1538 1655 4.963373 TCTGGAGGAACGATGTTTGTAAA 58.037 39.130 0.00 0.00 0.00 2.01
1573 1690 2.548067 GCGACCGGTCATTTATCTCCAT 60.548 50.000 32.80 0.00 0.00 3.41
1588 1705 2.074547 TCAAGTCCTAAAAGCGACCG 57.925 50.000 0.00 0.00 0.00 4.79
1614 1731 6.942576 ACTGTGCAGAAGAATATGTTAACCTT 59.057 34.615 6.17 0.00 0.00 3.50
1616 1733 6.743575 ACTGTGCAGAAGAATATGTTAACC 57.256 37.500 6.17 0.00 0.00 2.85
1619 1736 8.882736 CATGTAACTGTGCAGAAGAATATGTTA 58.117 33.333 6.17 0.00 0.00 2.41
1643 1760 4.313020 AAATTTCTGAGTCTGAGGCCAT 57.687 40.909 5.01 0.00 0.00 4.40
1674 1792 5.836024 ACATTTCTCCTACCCACTAAACA 57.164 39.130 0.00 0.00 0.00 2.83
1678 1796 5.724370 TCATGAACATTTCTCCTACCCACTA 59.276 40.000 0.00 0.00 0.00 2.74
1681 1799 5.512942 TTCATGAACATTTCTCCTACCCA 57.487 39.130 3.38 0.00 0.00 4.51
1682 1800 6.122277 TCATTCATGAACATTTCTCCTACCC 58.878 40.000 11.07 0.00 33.08 3.69
1767 1886 5.309806 GGAGGGGAGGAGCATTTTATTAGTA 59.690 44.000 0.00 0.00 0.00 1.82
1775 1894 2.009302 GGGGAGGGGAGGAGCATTT 61.009 63.158 0.00 0.00 0.00 2.32
1783 1902 4.505970 CAGGGGAGGGGAGGGGAG 62.506 77.778 0.00 0.00 0.00 4.30
1835 1957 2.662596 CTGCGGTGCTAGGGTTGA 59.337 61.111 0.00 0.00 0.00 3.18
1836 1958 2.436646 CCTGCGGTGCTAGGGTTG 60.437 66.667 0.00 0.00 0.00 3.77
1942 2074 1.372748 GCCGCCTCAGATGAGATCG 60.373 63.158 11.44 12.82 44.74 3.69
2127 2264 4.194720 GGATCCGCAGTCGTCGCT 62.195 66.667 0.00 0.00 0.00 4.93
2131 2268 2.126071 CGTTGGATCCGCAGTCGT 60.126 61.111 7.39 0.00 0.00 4.34
2196 2335 0.326048 CTCCTCACTGGTCCCTCCAT 60.326 60.000 0.00 0.00 46.12 3.41
2220 2359 1.186267 GGTAATCCGGCGGAGATCCT 61.186 60.000 33.82 14.47 34.05 3.24
2248 2387 0.878523 CCTTGCCACGAAGACGAACA 60.879 55.000 0.00 0.00 42.66 3.18
2273 2412 2.032528 CAGCTGGCTGGAACCGAA 59.967 61.111 14.11 0.00 40.17 4.30
2289 2428 2.119029 ATGTCGTCCCGATCTCGCA 61.119 57.895 0.00 0.00 38.42 5.10
2309 2448 1.908066 GCGCGATTTTCACCGGAAGT 61.908 55.000 12.10 0.00 33.82 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.