Multiple sequence alignment - TraesCS5A01G013400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G013400 chr5A 100.000 4106 0 0 780 4885 9323259 9327364 0.000000e+00 7583
1 TraesCS5A01G013400 chr5A 100.000 461 0 0 1 461 9322480 9322940 0.000000e+00 852
2 TraesCS5A01G013400 chr5A 100.000 238 0 0 1 238 605343855 605344092 1.610000e-119 440
3 TraesCS5A01G013400 chr5A 99.167 240 2 0 1 240 537346898 537347137 2.700000e-117 433
4 TraesCS5A01G013400 chr5D 93.677 2151 117 8 1486 3623 10897950 10900094 0.000000e+00 3201
5 TraesCS5A01G013400 chr5D 89.884 1295 74 22 3439 4716 10900096 10901350 0.000000e+00 1613
6 TraesCS5A01G013400 chr5D 90.948 707 30 13 780 1485 10897215 10897888 0.000000e+00 920
7 TraesCS5A01G013400 chr5D 93.363 226 8 4 237 461 10896916 10897135 1.310000e-85 327
8 TraesCS5A01G013400 chr5B 92.364 2056 141 7 1841 3885 11455711 11457761 0.000000e+00 2913
9 TraesCS5A01G013400 chr5B 92.688 465 22 6 853 1317 11454818 11455270 0.000000e+00 660
10 TraesCS5A01G013400 chr5B 89.655 464 30 10 1350 1802 11455263 11455719 4.240000e-160 575
11 TraesCS5A01G013400 chr5B 83.503 588 44 22 3866 4442 11457880 11458425 2.630000e-137 499
12 TraesCS5A01G013400 chr5B 97.333 150 4 0 4736 4885 461694294 461694145 6.270000e-64 255
13 TraesCS5A01G013400 chr5B 95.890 73 3 0 4644 4716 11458425 11458497 8.590000e-23 119
14 TraesCS5A01G013400 chr4B 82.237 1368 162 25 2135 3456 446856414 446855082 0.000000e+00 1105
15 TraesCS5A01G013400 chr4B 91.946 149 12 0 4736 4884 614063200 614063348 4.950000e-50 209
16 TraesCS5A01G013400 chr4A 82.751 1287 155 25 2135 3388 103387978 103389230 0.000000e+00 1085
17 TraesCS5A01G013400 chr4A 91.946 149 12 0 4736 4884 708318410 708318558 4.950000e-50 209
18 TraesCS5A01G013400 chr4D 84.156 1155 136 13 2135 3257 361598457 361597318 0.000000e+00 1075
19 TraesCS5A01G013400 chr7A 99.580 238 1 0 1 238 704840097 704840334 7.510000e-118 435
20 TraesCS5A01G013400 chr6A 99.580 238 1 0 1 238 38481906 38482143 7.510000e-118 435
21 TraesCS5A01G013400 chr6A 97.890 237 4 1 1 237 100351889 100352124 4.550000e-110 409
22 TraesCS5A01G013400 chr2A 99.578 237 0 1 1 237 705852269 705852504 9.710000e-117 431
23 TraesCS5A01G013400 chr1A 99.160 238 2 0 1 238 496091550 496091313 3.490000e-116 429
24 TraesCS5A01G013400 chr1A 98.739 238 3 0 1 238 541887345 541887108 1.630000e-114 424
25 TraesCS5A01G013400 chrUn 99.160 238 1 1 1 238 252263393 252263157 1.260000e-115 427
26 TraesCS5A01G013400 chr6B 98.667 150 2 0 4736 4885 689938875 689939024 2.900000e-67 267
27 TraesCS5A01G013400 chr6B 91.946 149 12 0 4736 4884 674950375 674950227 4.950000e-50 209
28 TraesCS5A01G013400 chr2B 91.275 149 13 0 4736 4884 170884988 170885136 2.310000e-48 204
29 TraesCS5A01G013400 chr3A 90.604 149 14 0 4736 4884 715436354 715436502 1.070000e-46 198
30 TraesCS5A01G013400 chr3B 98.214 112 2 0 4774 4885 643987234 643987345 3.860000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G013400 chr5A 9322480 9327364 4884 False 4217.50 7583 100.000 1 4885 2 chr5A.!!$F3 4884
1 TraesCS5A01G013400 chr5D 10896916 10901350 4434 False 1515.25 3201 91.968 237 4716 4 chr5D.!!$F1 4479
2 TraesCS5A01G013400 chr5B 11454818 11458497 3679 False 953.20 2913 90.820 853 4716 5 chr5B.!!$F1 3863
3 TraesCS5A01G013400 chr4B 446855082 446856414 1332 True 1105.00 1105 82.237 2135 3456 1 chr4B.!!$R1 1321
4 TraesCS5A01G013400 chr4A 103387978 103389230 1252 False 1085.00 1085 82.751 2135 3388 1 chr4A.!!$F1 1253
5 TraesCS5A01G013400 chr4D 361597318 361598457 1139 True 1075.00 1075 84.156 2135 3257 1 chr4D.!!$R1 1122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.036388 TGCGGATTCAGTCAAGGTCC 60.036 55.0 0.0 0.0 0.00 4.46 F
1244 1249 0.246635 AACTGTACTGGCCACTAGCG 59.753 55.0 0.0 0.0 45.17 4.26 F
2391 2477 0.462759 CGGCATCCTTCTCCAACTCC 60.463 60.0 0.0 0.0 0.00 3.85 F
2880 2978 1.013596 CGCCGTATTCCATTGCTTCA 58.986 50.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1990 0.034616 TGCAAAGGAAAATTGGGCCG 59.965 50.0 0.00 0.0 0.00 6.13 R
3080 3196 0.963355 GTCCCTCGAGACACTGAGCT 60.963 60.0 15.71 0.0 36.73 4.09 R
3363 3482 0.037303 CTGCTGGCTTCTTTGAGGGA 59.963 55.0 0.00 0.0 0.00 4.20 R
4858 5333 0.026803 GGCGCATTGCTTCTTACGAG 59.973 55.0 10.83 0.0 45.43 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.848562 AGTCGTAACAAGATCACTCACA 57.151 40.909 0.00 0.00 0.00 3.58
23 24 5.392767 AGTCGTAACAAGATCACTCACAT 57.607 39.130 0.00 0.00 0.00 3.21
24 25 5.403246 AGTCGTAACAAGATCACTCACATC 58.597 41.667 0.00 0.00 0.00 3.06
25 26 5.048013 AGTCGTAACAAGATCACTCACATCA 60.048 40.000 0.00 0.00 0.00 3.07
26 27 5.633601 GTCGTAACAAGATCACTCACATCAA 59.366 40.000 0.00 0.00 0.00 2.57
27 28 5.633601 TCGTAACAAGATCACTCACATCAAC 59.366 40.000 0.00 0.00 0.00 3.18
28 29 5.405269 CGTAACAAGATCACTCACATCAACA 59.595 40.000 0.00 0.00 0.00 3.33
29 30 5.936686 AACAAGATCACTCACATCAACAG 57.063 39.130 0.00 0.00 0.00 3.16
30 31 5.219343 ACAAGATCACTCACATCAACAGA 57.781 39.130 0.00 0.00 0.00 3.41
31 32 5.614308 ACAAGATCACTCACATCAACAGAA 58.386 37.500 0.00 0.00 0.00 3.02
32 33 5.699915 ACAAGATCACTCACATCAACAGAAG 59.300 40.000 0.00 0.00 0.00 2.85
33 34 4.252073 AGATCACTCACATCAACAGAAGC 58.748 43.478 0.00 0.00 0.00 3.86
34 35 3.473923 TCACTCACATCAACAGAAGCA 57.526 42.857 0.00 0.00 0.00 3.91
35 36 3.807553 TCACTCACATCAACAGAAGCAA 58.192 40.909 0.00 0.00 0.00 3.91
36 37 3.561310 TCACTCACATCAACAGAAGCAAC 59.439 43.478 0.00 0.00 0.00 4.17
37 38 3.313249 CACTCACATCAACAGAAGCAACA 59.687 43.478 0.00 0.00 0.00 3.33
38 39 3.947196 ACTCACATCAACAGAAGCAACAA 59.053 39.130 0.00 0.00 0.00 2.83
39 40 4.581824 ACTCACATCAACAGAAGCAACAAT 59.418 37.500 0.00 0.00 0.00 2.71
40 41 4.862350 TCACATCAACAGAAGCAACAATG 58.138 39.130 0.00 0.00 0.00 2.82
41 42 4.338964 TCACATCAACAGAAGCAACAATGT 59.661 37.500 0.00 0.00 0.00 2.71
42 43 5.530543 TCACATCAACAGAAGCAACAATGTA 59.469 36.000 0.00 0.00 0.00 2.29
43 44 6.039159 TCACATCAACAGAAGCAACAATGTAA 59.961 34.615 0.00 0.00 0.00 2.41
44 45 6.696583 CACATCAACAGAAGCAACAATGTAAA 59.303 34.615 0.00 0.00 0.00 2.01
45 46 7.222417 CACATCAACAGAAGCAACAATGTAAAA 59.778 33.333 0.00 0.00 0.00 1.52
46 47 7.436080 ACATCAACAGAAGCAACAATGTAAAAG 59.564 33.333 0.00 0.00 0.00 2.27
47 48 5.748152 TCAACAGAAGCAACAATGTAAAAGC 59.252 36.000 0.00 0.00 0.00 3.51
48 49 5.520376 ACAGAAGCAACAATGTAAAAGCT 57.480 34.783 0.00 0.00 0.00 3.74
49 50 5.284079 ACAGAAGCAACAATGTAAAAGCTG 58.716 37.500 0.00 4.31 31.88 4.24
50 51 5.067674 ACAGAAGCAACAATGTAAAAGCTGA 59.932 36.000 10.79 0.00 31.88 4.26
51 52 6.154445 CAGAAGCAACAATGTAAAAGCTGAT 58.846 36.000 0.00 0.00 31.88 2.90
52 53 6.307318 CAGAAGCAACAATGTAAAAGCTGATC 59.693 38.462 0.00 0.00 31.88 2.92
53 54 5.710513 AGCAACAATGTAAAAGCTGATCA 57.289 34.783 0.00 0.00 0.00 2.92
54 55 6.276832 AGCAACAATGTAAAAGCTGATCAT 57.723 33.333 0.00 0.00 0.00 2.45
55 56 6.327934 AGCAACAATGTAAAAGCTGATCATC 58.672 36.000 0.00 0.00 0.00 2.92
56 57 6.071784 AGCAACAATGTAAAAGCTGATCATCA 60.072 34.615 0.00 0.00 0.00 3.07
57 58 6.587226 GCAACAATGTAAAAGCTGATCATCAA 59.413 34.615 0.00 0.00 0.00 2.57
58 59 7.201410 GCAACAATGTAAAAGCTGATCATCAAG 60.201 37.037 0.00 0.00 0.00 3.02
59 60 6.327934 ACAATGTAAAAGCTGATCATCAAGC 58.672 36.000 0.00 0.00 0.00 4.01
60 61 6.152323 ACAATGTAAAAGCTGATCATCAAGCT 59.848 34.615 0.00 0.00 34.14 3.74
61 62 5.808042 TGTAAAAGCTGATCATCAAGCTC 57.192 39.130 7.56 0.00 32.48 4.09
62 63 4.330894 TGTAAAAGCTGATCATCAAGCTCG 59.669 41.667 7.56 0.00 32.48 5.03
63 64 2.975732 AAGCTGATCATCAAGCTCGA 57.024 45.000 7.56 0.00 32.48 4.04
64 65 3.472283 AAGCTGATCATCAAGCTCGAT 57.528 42.857 7.56 0.00 32.48 3.59
65 66 3.472283 AGCTGATCATCAAGCTCGATT 57.528 42.857 0.00 0.00 29.31 3.34
66 67 4.597404 AGCTGATCATCAAGCTCGATTA 57.403 40.909 0.00 0.00 29.31 1.75
67 68 4.558178 AGCTGATCATCAAGCTCGATTAG 58.442 43.478 0.00 0.00 29.31 1.73
79 80 3.511856 CTCGATTAGCTTTGCGGATTC 57.488 47.619 0.00 0.00 0.00 2.52
80 81 2.866156 CTCGATTAGCTTTGCGGATTCA 59.134 45.455 0.00 0.00 0.00 2.57
81 82 2.866156 TCGATTAGCTTTGCGGATTCAG 59.134 45.455 0.00 0.00 0.00 3.02
82 83 2.609459 CGATTAGCTTTGCGGATTCAGT 59.391 45.455 0.00 0.00 0.00 3.41
83 84 3.302740 CGATTAGCTTTGCGGATTCAGTC 60.303 47.826 0.00 0.00 0.00 3.51
84 85 2.760634 TAGCTTTGCGGATTCAGTCA 57.239 45.000 0.00 0.00 0.00 3.41
85 86 1.896220 AGCTTTGCGGATTCAGTCAA 58.104 45.000 0.00 0.00 0.00 3.18
86 87 1.808945 AGCTTTGCGGATTCAGTCAAG 59.191 47.619 0.00 0.00 0.00 3.02
87 88 1.135575 GCTTTGCGGATTCAGTCAAGG 60.136 52.381 0.00 0.00 0.00 3.61
88 89 2.154462 CTTTGCGGATTCAGTCAAGGT 58.846 47.619 0.00 0.00 0.00 3.50
89 90 1.808411 TTGCGGATTCAGTCAAGGTC 58.192 50.000 0.00 0.00 0.00 3.85
90 91 0.036388 TGCGGATTCAGTCAAGGTCC 60.036 55.000 0.00 0.00 0.00 4.46
91 92 0.250513 GCGGATTCAGTCAAGGTCCT 59.749 55.000 0.00 0.00 0.00 3.85
92 93 1.339151 GCGGATTCAGTCAAGGTCCTT 60.339 52.381 0.00 0.00 0.00 3.36
93 94 2.093658 GCGGATTCAGTCAAGGTCCTTA 60.094 50.000 3.08 0.00 0.00 2.69
94 95 3.786635 CGGATTCAGTCAAGGTCCTTAG 58.213 50.000 3.08 0.00 0.00 2.18
95 96 3.536570 GGATTCAGTCAAGGTCCTTAGC 58.463 50.000 3.08 0.06 0.00 3.09
96 97 3.198853 GGATTCAGTCAAGGTCCTTAGCT 59.801 47.826 3.08 2.58 34.01 3.32
97 98 3.963428 TTCAGTCAAGGTCCTTAGCTC 57.037 47.619 3.08 0.00 31.54 4.09
98 99 3.176924 TCAGTCAAGGTCCTTAGCTCT 57.823 47.619 3.08 0.00 31.54 4.09
99 100 3.511477 TCAGTCAAGGTCCTTAGCTCTT 58.489 45.455 3.08 0.00 31.54 2.85
100 101 3.511934 TCAGTCAAGGTCCTTAGCTCTTC 59.488 47.826 3.08 0.00 31.54 2.87
101 102 2.494073 AGTCAAGGTCCTTAGCTCTTCG 59.506 50.000 3.08 0.00 31.54 3.79
102 103 2.231721 GTCAAGGTCCTTAGCTCTTCGT 59.768 50.000 3.08 0.00 31.54 3.85
103 104 2.897969 TCAAGGTCCTTAGCTCTTCGTT 59.102 45.455 3.08 0.00 31.54 3.85
104 105 2.996621 CAAGGTCCTTAGCTCTTCGTTG 59.003 50.000 3.08 0.00 31.54 4.10
105 106 1.066787 AGGTCCTTAGCTCTTCGTTGC 60.067 52.381 0.00 0.00 0.00 4.17
106 107 1.066787 GGTCCTTAGCTCTTCGTTGCT 60.067 52.381 0.00 0.00 42.67 3.91
107 108 2.613223 GGTCCTTAGCTCTTCGTTGCTT 60.613 50.000 0.00 0.00 40.35 3.91
108 109 3.368116 GGTCCTTAGCTCTTCGTTGCTTA 60.368 47.826 0.00 0.00 40.35 3.09
109 110 4.434520 GTCCTTAGCTCTTCGTTGCTTAT 58.565 43.478 0.00 0.00 40.35 1.73
110 111 4.268884 GTCCTTAGCTCTTCGTTGCTTATG 59.731 45.833 0.00 0.00 40.35 1.90
111 112 4.081642 TCCTTAGCTCTTCGTTGCTTATGT 60.082 41.667 0.00 0.00 40.35 2.29
112 113 5.126545 TCCTTAGCTCTTCGTTGCTTATGTA 59.873 40.000 0.00 0.00 40.35 2.29
113 114 5.232414 CCTTAGCTCTTCGTTGCTTATGTAC 59.768 44.000 0.00 0.00 40.35 2.90
114 115 4.188247 AGCTCTTCGTTGCTTATGTACA 57.812 40.909 0.00 0.00 35.86 2.90
115 116 3.927142 AGCTCTTCGTTGCTTATGTACAC 59.073 43.478 0.00 0.00 35.86 2.90
116 117 3.678072 GCTCTTCGTTGCTTATGTACACA 59.322 43.478 0.00 0.00 0.00 3.72
117 118 4.151689 GCTCTTCGTTGCTTATGTACACAA 59.848 41.667 0.00 0.00 0.00 3.33
118 119 5.668866 GCTCTTCGTTGCTTATGTACACAAG 60.669 44.000 9.60 9.60 0.00 3.16
119 120 4.151689 TCTTCGTTGCTTATGTACACAAGC 59.848 41.667 27.98 27.98 45.90 4.01
126 127 5.801350 GCTTATGTACACAAGCAGATCAA 57.199 39.130 29.29 0.00 45.20 2.57
127 128 5.804173 GCTTATGTACACAAGCAGATCAAG 58.196 41.667 29.29 7.74 45.20 3.02
128 129 5.220739 GCTTATGTACACAAGCAGATCAAGG 60.221 44.000 29.29 0.00 45.20 3.61
129 130 3.769739 TGTACACAAGCAGATCAAGGT 57.230 42.857 0.00 0.00 0.00 3.50
130 131 3.664107 TGTACACAAGCAGATCAAGGTC 58.336 45.455 0.00 0.00 0.00 3.85
131 132 2.936919 ACACAAGCAGATCAAGGTCA 57.063 45.000 0.00 0.00 0.00 4.02
132 133 3.213206 ACACAAGCAGATCAAGGTCAA 57.787 42.857 0.00 0.00 0.00 3.18
133 134 3.759581 ACACAAGCAGATCAAGGTCAAT 58.240 40.909 0.00 0.00 0.00 2.57
134 135 3.504906 ACACAAGCAGATCAAGGTCAATG 59.495 43.478 0.00 0.00 0.00 2.82
135 136 3.504906 CACAAGCAGATCAAGGTCAATGT 59.495 43.478 0.00 0.00 0.00 2.71
136 137 3.755378 ACAAGCAGATCAAGGTCAATGTC 59.245 43.478 0.00 0.00 0.00 3.06
137 138 2.996631 AGCAGATCAAGGTCAATGTCC 58.003 47.619 0.00 0.00 0.00 4.02
138 139 2.019984 GCAGATCAAGGTCAATGTCCC 58.980 52.381 0.00 0.00 0.00 4.46
139 140 2.283298 CAGATCAAGGTCAATGTCCCG 58.717 52.381 0.00 0.00 0.00 5.14
140 141 1.210478 AGATCAAGGTCAATGTCCCGG 59.790 52.381 0.00 0.00 0.00 5.73
141 142 1.209504 GATCAAGGTCAATGTCCCGGA 59.790 52.381 0.73 0.00 0.00 5.14
142 143 1.060729 TCAAGGTCAATGTCCCGGAA 58.939 50.000 0.73 0.00 0.00 4.30
143 144 1.422024 TCAAGGTCAATGTCCCGGAAA 59.578 47.619 0.73 0.00 0.00 3.13
144 145 1.812571 CAAGGTCAATGTCCCGGAAAG 59.187 52.381 0.73 0.00 0.00 2.62
145 146 0.328258 AGGTCAATGTCCCGGAAAGG 59.672 55.000 0.73 0.00 40.63 3.11
146 147 0.326927 GGTCAATGTCCCGGAAAGGA 59.673 55.000 0.73 0.00 45.00 3.36
155 156 3.622166 TCCCGGAAAGGACATAGTTTC 57.378 47.619 0.73 0.00 45.00 2.78
156 157 3.178865 TCCCGGAAAGGACATAGTTTCT 58.821 45.455 0.73 0.00 45.00 2.52
157 158 3.055385 TCCCGGAAAGGACATAGTTTCTG 60.055 47.826 0.73 0.00 45.00 3.02
159 160 3.939066 CGGAAAGGACATAGTTTCTGGT 58.061 45.455 0.00 0.00 36.01 4.00
160 161 4.324267 CGGAAAGGACATAGTTTCTGGTT 58.676 43.478 0.00 0.00 36.01 3.67
161 162 4.392138 CGGAAAGGACATAGTTTCTGGTTC 59.608 45.833 0.00 0.00 36.01 3.62
162 163 5.561679 GGAAAGGACATAGTTTCTGGTTCT 58.438 41.667 0.00 0.00 33.85 3.01
163 164 6.573680 CGGAAAGGACATAGTTTCTGGTTCTA 60.574 42.308 0.00 0.00 36.01 2.10
164 165 6.819146 GGAAAGGACATAGTTTCTGGTTCTAG 59.181 42.308 0.00 0.00 33.85 2.43
165 166 5.346181 AGGACATAGTTTCTGGTTCTAGC 57.654 43.478 0.00 0.00 0.00 3.42
166 167 4.777896 AGGACATAGTTTCTGGTTCTAGCA 59.222 41.667 0.00 0.00 0.00 3.49
167 168 5.426833 AGGACATAGTTTCTGGTTCTAGCAT 59.573 40.000 0.00 0.00 0.00 3.79
168 169 5.525378 GGACATAGTTTCTGGTTCTAGCATG 59.475 44.000 0.00 0.00 0.00 4.06
169 170 6.299805 ACATAGTTTCTGGTTCTAGCATGA 57.700 37.500 0.00 0.00 0.00 3.07
170 171 6.344500 ACATAGTTTCTGGTTCTAGCATGAG 58.656 40.000 0.00 0.00 0.00 2.90
171 172 4.899352 AGTTTCTGGTTCTAGCATGAGT 57.101 40.909 0.00 0.00 0.00 3.41
172 173 4.826556 AGTTTCTGGTTCTAGCATGAGTC 58.173 43.478 0.00 0.00 0.00 3.36
173 174 3.895232 TTCTGGTTCTAGCATGAGTCC 57.105 47.619 0.00 0.00 0.00 3.85
174 175 2.111384 TCTGGTTCTAGCATGAGTCCC 58.889 52.381 0.00 0.00 0.00 4.46
175 176 2.114616 CTGGTTCTAGCATGAGTCCCT 58.885 52.381 0.00 0.00 0.00 4.20
176 177 2.503356 CTGGTTCTAGCATGAGTCCCTT 59.497 50.000 0.00 0.00 0.00 3.95
177 178 2.501723 TGGTTCTAGCATGAGTCCCTTC 59.498 50.000 0.00 0.00 0.00 3.46
178 179 2.501723 GGTTCTAGCATGAGTCCCTTCA 59.498 50.000 0.00 0.00 0.00 3.02
179 180 3.135530 GGTTCTAGCATGAGTCCCTTCAT 59.864 47.826 0.00 0.00 38.30 2.57
185 186 3.278668 CATGAGTCCCTTCATGCTTCT 57.721 47.619 3.37 0.00 45.49 2.85
186 187 3.618351 CATGAGTCCCTTCATGCTTCTT 58.382 45.455 3.37 0.00 45.49 2.52
187 188 3.795688 TGAGTCCCTTCATGCTTCTTT 57.204 42.857 0.00 0.00 0.00 2.52
188 189 3.679389 TGAGTCCCTTCATGCTTCTTTC 58.321 45.455 0.00 0.00 0.00 2.62
189 190 3.328931 TGAGTCCCTTCATGCTTCTTTCT 59.671 43.478 0.00 0.00 0.00 2.52
190 191 3.683802 AGTCCCTTCATGCTTCTTTCTG 58.316 45.455 0.00 0.00 0.00 3.02
191 192 3.073650 AGTCCCTTCATGCTTCTTTCTGT 59.926 43.478 0.00 0.00 0.00 3.41
192 193 4.287067 AGTCCCTTCATGCTTCTTTCTGTA 59.713 41.667 0.00 0.00 0.00 2.74
193 194 5.003804 GTCCCTTCATGCTTCTTTCTGTAA 58.996 41.667 0.00 0.00 0.00 2.41
194 195 5.473504 GTCCCTTCATGCTTCTTTCTGTAAA 59.526 40.000 0.00 0.00 0.00 2.01
195 196 6.016276 GTCCCTTCATGCTTCTTTCTGTAAAA 60.016 38.462 0.00 0.00 0.00 1.52
196 197 6.721208 TCCCTTCATGCTTCTTTCTGTAAAAT 59.279 34.615 0.00 0.00 0.00 1.82
197 198 6.810182 CCCTTCATGCTTCTTTCTGTAAAATG 59.190 38.462 0.00 0.00 0.00 2.32
198 199 6.309737 CCTTCATGCTTCTTTCTGTAAAATGC 59.690 38.462 0.00 0.00 0.00 3.56
199 200 6.330004 TCATGCTTCTTTCTGTAAAATGCA 57.670 33.333 0.00 0.00 0.00 3.96
200 201 6.151691 TCATGCTTCTTTCTGTAAAATGCAC 58.848 36.000 0.00 0.00 0.00 4.57
201 202 4.870363 TGCTTCTTTCTGTAAAATGCACC 58.130 39.130 0.00 0.00 0.00 5.01
202 203 4.584325 TGCTTCTTTCTGTAAAATGCACCT 59.416 37.500 0.00 0.00 0.00 4.00
203 204 4.919754 GCTTCTTTCTGTAAAATGCACCTG 59.080 41.667 0.00 0.00 0.00 4.00
204 205 5.278463 GCTTCTTTCTGTAAAATGCACCTGA 60.278 40.000 0.00 0.00 0.00 3.86
205 206 6.571150 GCTTCTTTCTGTAAAATGCACCTGAT 60.571 38.462 0.00 0.00 0.00 2.90
206 207 6.500684 TCTTTCTGTAAAATGCACCTGATC 57.499 37.500 0.00 0.00 0.00 2.92
207 208 6.003326 TCTTTCTGTAAAATGCACCTGATCA 58.997 36.000 0.00 0.00 0.00 2.92
208 209 6.660521 TCTTTCTGTAAAATGCACCTGATCAT 59.339 34.615 0.00 0.00 0.00 2.45
209 210 6.441093 TTCTGTAAAATGCACCTGATCATC 57.559 37.500 0.00 0.00 0.00 2.92
210 211 5.499313 TCTGTAAAATGCACCTGATCATCA 58.501 37.500 0.00 0.00 0.00 3.07
211 212 5.945191 TCTGTAAAATGCACCTGATCATCAA 59.055 36.000 0.00 0.00 0.00 2.57
212 213 6.604396 TCTGTAAAATGCACCTGATCATCAAT 59.396 34.615 0.00 0.00 0.00 2.57
213 214 7.774625 TCTGTAAAATGCACCTGATCATCAATA 59.225 33.333 0.00 0.00 0.00 1.90
214 215 8.291191 TGTAAAATGCACCTGATCATCAATAA 57.709 30.769 0.00 0.00 0.00 1.40
215 216 8.747471 TGTAAAATGCACCTGATCATCAATAAA 58.253 29.630 0.00 0.00 0.00 1.40
216 217 9.241317 GTAAAATGCACCTGATCATCAATAAAG 57.759 33.333 0.00 0.00 0.00 1.85
217 218 7.414222 AAATGCACCTGATCATCAATAAAGT 57.586 32.000 0.00 0.00 0.00 2.66
218 219 7.414222 AATGCACCTGATCATCAATAAAGTT 57.586 32.000 0.00 0.00 0.00 2.66
219 220 6.839124 TGCACCTGATCATCAATAAAGTTT 57.161 33.333 0.00 0.00 0.00 2.66
220 221 7.230849 TGCACCTGATCATCAATAAAGTTTT 57.769 32.000 0.00 0.00 0.00 2.43
221 222 7.315142 TGCACCTGATCATCAATAAAGTTTTC 58.685 34.615 0.00 0.00 0.00 2.29
222 223 7.177216 TGCACCTGATCATCAATAAAGTTTTCT 59.823 33.333 0.00 0.00 0.00 2.52
223 224 8.031277 GCACCTGATCATCAATAAAGTTTTCTT 58.969 33.333 0.00 0.00 42.58 2.52
224 225 9.350357 CACCTGATCATCAATAAAGTTTTCTTG 57.650 33.333 0.00 0.00 40.37 3.02
225 226 9.082313 ACCTGATCATCAATAAAGTTTTCTTGT 57.918 29.630 0.00 0.00 40.37 3.16
226 227 9.350357 CCTGATCATCAATAAAGTTTTCTTGTG 57.650 33.333 0.00 1.50 40.37 3.33
227 228 9.903682 CTGATCATCAATAAAGTTTTCTTGTGT 57.096 29.630 0.00 0.00 40.37 3.72
274 275 2.093890 TGGGTTGACATCATCATGTGC 58.906 47.619 0.00 0.00 43.79 4.57
306 307 5.258841 TGGATCAATTCTTGTTCTCAGCAT 58.741 37.500 0.00 0.00 31.61 3.79
332 333 7.664082 TTTTTGTGTGCTTGAATTGAAAGAA 57.336 28.000 2.35 0.00 0.00 2.52
333 334 6.890663 TTTGTGTGCTTGAATTGAAAGAAG 57.109 33.333 2.35 0.00 0.00 2.85
334 335 5.833406 TGTGTGCTTGAATTGAAAGAAGA 57.167 34.783 2.35 0.00 0.00 2.87
335 336 6.206395 TGTGTGCTTGAATTGAAAGAAGAA 57.794 33.333 2.35 0.00 0.00 2.52
336 337 6.267817 TGTGTGCTTGAATTGAAAGAAGAAG 58.732 36.000 2.35 0.00 0.00 2.85
340 341 8.034215 TGTGCTTGAATTGAAAGAAGAAGAAAA 58.966 29.630 2.35 0.00 0.00 2.29
369 370 4.174704 TGCAATGGAAGATGATTAGCCT 57.825 40.909 0.00 0.00 0.00 4.58
422 424 2.563179 TCTTCTCCTTTCCCGTTCTCTG 59.437 50.000 0.00 0.00 0.00 3.35
801 803 1.595382 CCCGCACCAGATTCGATCC 60.595 63.158 0.00 0.00 0.00 3.36
802 804 1.443407 CCGCACCAGATTCGATCCT 59.557 57.895 0.00 0.00 0.00 3.24
822 824 2.282887 CCCTCCCAAAACCCACGG 60.283 66.667 0.00 0.00 0.00 4.94
858 860 2.746803 CCGAATCCGCCGTTTCCAC 61.747 63.158 0.00 0.00 0.00 4.02
958 960 4.277593 CGCGAGGAGGCTAGCTGG 62.278 72.222 15.72 0.00 0.00 4.85
960 962 2.123683 CGAGGAGGCTAGCTGGGA 60.124 66.667 15.72 0.00 0.00 4.37
1102 1104 0.587242 GCGCACGCTTACATGTGATG 60.587 55.000 9.11 0.00 38.36 3.07
1103 1105 0.721154 CGCACGCTTACATGTGATGT 59.279 50.000 9.11 0.00 46.92 3.06
1104 1106 1.527591 CGCACGCTTACATGTGATGTG 60.528 52.381 9.11 12.85 44.60 3.21
1108 1113 1.202065 CGCTTACATGTGATGTGGTGC 60.202 52.381 9.11 0.00 44.60 5.01
1187 1192 3.713936 GGTACCTGCCGAAATTTGC 57.286 52.632 4.06 0.00 0.00 3.68
1191 1196 0.827507 ACCTGCCGAAATTTGCCAGT 60.828 50.000 0.00 0.00 0.00 4.00
1194 1199 0.885196 TGCCGAAATTTGCCAGTACC 59.115 50.000 0.00 0.00 0.00 3.34
1195 1200 1.173913 GCCGAAATTTGCCAGTACCT 58.826 50.000 0.00 0.00 0.00 3.08
1196 1201 1.135402 GCCGAAATTTGCCAGTACCTG 60.135 52.381 0.00 0.00 0.00 4.00
1197 1202 2.432444 CCGAAATTTGCCAGTACCTGA 58.568 47.619 0.00 0.00 32.44 3.86
1211 1216 2.706339 ACCTGAATGAGCTCATCCAC 57.294 50.000 28.83 21.44 35.10 4.02
1215 1220 1.137675 TGAATGAGCTCATCCACTCCG 59.862 52.381 28.83 0.00 35.10 4.63
1242 1247 1.623811 ACCAACTGTACTGGCCACTAG 59.376 52.381 0.00 0.00 37.48 2.57
1243 1248 1.676014 CCAACTGTACTGGCCACTAGC 60.676 57.143 0.00 0.00 42.60 3.42
1244 1249 0.246635 AACTGTACTGGCCACTAGCG 59.753 55.000 0.00 0.00 45.17 4.26
1254 1259 1.886313 CCACTAGCGGCTGATGCAG 60.886 63.158 13.86 3.77 41.91 4.41
1354 1359 1.265365 GGCTGCTGAACTGAACTGAAC 59.735 52.381 0.00 0.00 0.00 3.18
1379 1384 4.070581 CAGTAATTTTGCTGTCAGTCCG 57.929 45.455 0.93 0.00 36.35 4.79
1396 1401 1.062258 CCGTGTTGAATTGCATGCAC 58.938 50.000 22.58 10.11 32.72 4.57
1426 1431 3.230134 AGACCAGCCACTAATTTTGCAA 58.770 40.909 0.00 0.00 0.00 4.08
1462 1467 4.329462 GGAGTGTGTATCTCTCCCATTC 57.671 50.000 0.00 0.00 45.73 2.67
1463 1468 3.070302 GGAGTGTGTATCTCTCCCATTCC 59.930 52.174 0.00 0.00 45.73 3.01
1471 1476 1.294986 TCTCTCCCATTCCTCCATGGA 59.705 52.381 15.27 15.27 46.18 3.41
1478 1483 5.169438 TCCCATTCCTCCATGGATATTGTA 58.831 41.667 16.63 0.00 46.18 2.41
1533 1599 7.391148 TTTTTCCACTTATATTCACAGAGGC 57.609 36.000 0.00 0.00 0.00 4.70
1535 1601 4.037222 TCCACTTATATTCACAGAGGCCA 58.963 43.478 5.01 0.00 0.00 5.36
1536 1602 4.473196 TCCACTTATATTCACAGAGGCCAA 59.527 41.667 5.01 0.00 0.00 4.52
1549 1615 2.174210 AGAGGCCAATAGTCATGTGCAT 59.826 45.455 5.01 0.00 0.00 3.96
1550 1616 2.551459 GAGGCCAATAGTCATGTGCATC 59.449 50.000 5.01 0.00 0.00 3.91
1587 1663 4.002906 ACATTGTCCGTTCAGCTCTAAA 57.997 40.909 0.00 0.00 0.00 1.85
1622 1698 1.055338 GCATTTTGCACTCGTTCAGC 58.945 50.000 0.00 0.00 44.26 4.26
1641 1717 2.009051 GCCAGTAATTTTGCAATGCCC 58.991 47.619 1.53 0.00 0.00 5.36
1738 1814 2.029918 GGATTTGGGCTTCTGTTCACAC 60.030 50.000 0.00 0.00 0.00 3.82
1748 1824 6.030228 GGCTTCTGTTCACACTTATATTTGC 58.970 40.000 0.00 0.00 0.00 3.68
1801 1877 2.224621 ACAAACTCTGTGGTGCTATGCT 60.225 45.455 0.00 0.00 36.69 3.79
1823 1899 4.243007 AGGATCCTTTTGCACTTTTTCG 57.757 40.909 9.02 0.00 0.00 3.46
1886 1962 8.980143 ACAACAGTTTTTATGTTATATGTGCC 57.020 30.769 0.00 0.00 38.80 5.01
1891 1967 9.585099 CAGTTTTTATGTTATATGTGCCACATT 57.415 29.630 16.67 6.69 39.88 2.71
1917 1993 3.554324 TCGTTATGCTTATGAAGTTCGGC 59.446 43.478 0.00 1.24 0.00 5.54
1930 2006 2.325484 AGTTCGGCCCAATTTTCCTTT 58.675 42.857 0.00 0.00 0.00 3.11
1936 2012 2.086094 GCCCAATTTTCCTTTGCATGG 58.914 47.619 0.00 0.00 0.00 3.66
1982 2058 6.971726 TCCTTTCTGTACAGAGTTCAGTAA 57.028 37.500 23.97 13.43 38.88 2.24
1985 2061 6.528423 CCTTTCTGTACAGAGTTCAGTAATCG 59.472 42.308 23.97 4.95 38.88 3.34
2004 2085 1.332465 CGTGTGCAATTTCGTCGTTGA 60.332 47.619 0.00 0.00 0.00 3.18
2082 2163 1.782569 CTGCGCAGTCAATTTTGTGTG 59.217 47.619 29.24 0.00 0.00 3.82
2087 2168 3.725740 CGCAGTCAATTTTGTGTGTCTTC 59.274 43.478 0.00 0.00 0.00 2.87
2110 2191 8.871629 TTCCTTTACCTGTCAATAATTAGCAA 57.128 30.769 0.00 0.00 0.00 3.91
2114 2195 3.627577 ACCTGTCAATAATTAGCAAGGCG 59.372 43.478 0.00 0.00 0.00 5.52
2158 2241 8.717821 TCAAATTCATGTACTTGCACTACTAAC 58.282 33.333 3.90 0.00 0.00 2.34
2391 2477 0.462759 CGGCATCCTTCTCCAACTCC 60.463 60.000 0.00 0.00 0.00 3.85
2451 2537 4.654915 TGTCAATCTCTGCAAATTCTCCA 58.345 39.130 0.00 0.00 0.00 3.86
2627 2713 1.663379 CCAGATGTCCCGTACGCTCA 61.663 60.000 10.49 8.63 0.00 4.26
2880 2978 1.013596 CGCCGTATTCCATTGCTTCA 58.986 50.000 0.00 0.00 0.00 3.02
3080 3196 3.660970 TCAGGCTTATAATGGTGGCAA 57.339 42.857 0.00 0.00 0.00 4.52
3261 3377 4.344968 GGAAACAATGCCCCTGCTAATAAT 59.655 41.667 0.00 0.00 38.71 1.28
3273 3389 6.017192 CCCTGCTAATAATACAGAGGAGGTA 58.983 44.000 7.41 0.00 43.88 3.08
3274 3390 6.071278 CCCTGCTAATAATACAGAGGAGGTAC 60.071 46.154 7.41 0.00 43.88 3.34
3288 3404 2.199236 GAGGTACGCCCGTTTAATGAG 58.801 52.381 0.00 0.00 38.74 2.90
3293 3409 1.062525 GCCCGTTTAATGAGCTGCG 59.937 57.895 0.00 0.00 0.00 5.18
3298 3417 3.546020 CCCGTTTAATGAGCTGCGTAATG 60.546 47.826 0.00 0.00 0.00 1.90
3325 3444 3.263425 GGTTCAGAAGGTGGGTAAGATGA 59.737 47.826 0.00 0.00 0.00 2.92
3339 3458 6.667848 TGGGTAAGATGAGTAGATCACTTTCA 59.332 38.462 0.00 0.00 41.91 2.69
3363 3482 6.585695 AATGCAAAAGAGATGATGACAAGT 57.414 33.333 0.00 0.00 0.00 3.16
3376 3495 2.851195 TGACAAGTCCCTCAAAGAAGC 58.149 47.619 0.00 0.00 0.00 3.86
3392 3523 2.033141 GCCAGCAGACCAGCTTCA 59.967 61.111 0.00 0.00 43.70 3.02
3406 3537 2.816087 CAGCTTCAACATAAGGCAGTGT 59.184 45.455 0.00 0.00 0.00 3.55
3457 3588 0.887933 CTTCCAACCCCAACCATTCG 59.112 55.000 0.00 0.00 0.00 3.34
3601 3917 3.057315 CCTGAACCTAAATGCTGGTGTTG 60.057 47.826 0.00 0.00 36.57 3.33
3606 3922 2.884012 CCTAAATGCTGGTGTTGTGTCA 59.116 45.455 0.00 0.00 0.00 3.58
3617 3933 2.783284 GTGTTGTGTCAATGTTTCTGCG 59.217 45.455 0.00 0.00 0.00 5.18
3650 3966 4.043435 ACCATGCTCCTTTCCTTTCTTACT 59.957 41.667 0.00 0.00 0.00 2.24
3659 3975 4.706842 TTCCTTTCTTACTGCAGGAACT 57.293 40.909 19.93 0.00 39.95 3.01
3812 4128 2.687805 CGCGGAGGTCGAGTTCAGA 61.688 63.158 0.00 0.00 42.43 3.27
3977 4427 2.126618 CCTAGCGTGCGTTGTCGA 60.127 61.111 0.00 0.00 39.71 4.20
3978 4428 1.516386 CCTAGCGTGCGTTGTCGAT 60.516 57.895 0.00 0.00 39.71 3.59
3979 4429 1.472276 CCTAGCGTGCGTTGTCGATC 61.472 60.000 0.00 0.00 39.71 3.69
3980 4430 1.788621 CTAGCGTGCGTTGTCGATCG 61.789 60.000 9.36 9.36 39.71 3.69
4024 4475 0.673956 TCTGTCGTAGTCGCAGAGCT 60.674 55.000 0.00 0.00 41.35 4.09
4076 4527 3.803340 TGTCTGGGGATCCTTTCTACTT 58.197 45.455 12.58 0.00 0.00 2.24
4149 4603 1.538047 TTGCCATGTTCCTCTTCTGC 58.462 50.000 0.00 0.00 0.00 4.26
4178 4632 3.097614 AGACTCTGTAACCATTAGCCGT 58.902 45.455 0.00 0.00 0.00 5.68
4181 4635 2.167693 CTCTGTAACCATTAGCCGTCCA 59.832 50.000 0.00 0.00 0.00 4.02
4243 4699 2.202878 GCCGCCTGAATACTCGCA 60.203 61.111 0.00 0.00 0.00 5.10
4247 4703 0.877649 CGCCTGAATACTCGCATGCT 60.878 55.000 17.13 0.00 0.00 3.79
4264 4720 0.248215 GCTTACGCGATTTGCTGCAT 60.248 50.000 15.93 0.00 43.27 3.96
4265 4721 1.734885 CTTACGCGATTTGCTGCATC 58.265 50.000 15.93 0.00 43.27 3.91
4274 4730 4.337763 CGATTTGCTGCATCTAACTGAAC 58.662 43.478 1.84 0.00 0.00 3.18
4275 4731 4.093998 CGATTTGCTGCATCTAACTGAACT 59.906 41.667 1.84 0.00 0.00 3.01
4292 4748 6.471146 ACTGAACTTGATCTTGAGTAGCATT 58.529 36.000 0.00 0.00 0.00 3.56
4309 4765 1.067846 CATTGTTCACAGCAGCAGCAT 60.068 47.619 3.17 0.00 45.49 3.79
4312 4768 0.594602 GTTCACAGCAGCAGCATCAA 59.405 50.000 3.17 0.00 45.49 2.57
4313 4769 1.201647 GTTCACAGCAGCAGCATCAAT 59.798 47.619 3.17 0.00 45.49 2.57
4314 4770 0.808755 TCACAGCAGCAGCATCAATG 59.191 50.000 3.17 0.00 45.49 2.82
4315 4771 0.526211 CACAGCAGCAGCATCAATGT 59.474 50.000 3.17 0.00 45.49 2.71
4316 4772 0.809385 ACAGCAGCAGCATCAATGTC 59.191 50.000 3.17 0.00 45.49 3.06
4317 4773 0.808755 CAGCAGCAGCATCAATGTCA 59.191 50.000 3.17 0.00 45.49 3.58
4318 4774 1.201414 CAGCAGCAGCATCAATGTCAA 59.799 47.619 3.17 0.00 45.49 3.18
4319 4775 2.100197 AGCAGCAGCATCAATGTCAAT 58.900 42.857 3.17 0.00 45.49 2.57
4320 4776 2.159240 AGCAGCAGCATCAATGTCAATG 60.159 45.455 3.17 0.00 45.49 2.82
4321 4777 2.193447 CAGCAGCATCAATGTCAATGC 58.807 47.619 0.00 0.46 46.84 3.56
4325 4781 2.953466 GCATCAATGTCAATGCTGGT 57.047 45.000 1.44 0.00 43.87 4.00
4327 4783 3.699067 GCATCAATGTCAATGCTGGTAC 58.301 45.455 1.44 0.00 43.87 3.34
4328 4784 3.489738 GCATCAATGTCAATGCTGGTACC 60.490 47.826 4.43 4.43 43.87 3.34
4329 4785 2.722094 TCAATGTCAATGCTGGTACCC 58.278 47.619 10.07 0.00 0.00 3.69
4330 4786 2.308570 TCAATGTCAATGCTGGTACCCT 59.691 45.455 10.07 0.00 0.00 4.34
4331 4787 2.424601 CAATGTCAATGCTGGTACCCTG 59.575 50.000 10.07 3.37 0.00 4.45
4332 4788 0.322456 TGTCAATGCTGGTACCCTGC 60.322 55.000 17.09 17.09 46.46 4.85
4448 4920 7.917505 GGAAGGAAGTCTTTTGTTATATGCATG 59.082 37.037 10.16 0.00 35.50 4.06
4484 4956 4.632153 TGTTCTCTGCCTTTCTACAGTTC 58.368 43.478 0.00 0.00 35.37 3.01
4485 4957 4.100963 TGTTCTCTGCCTTTCTACAGTTCA 59.899 41.667 0.00 0.00 35.37 3.18
4487 4959 4.825422 TCTCTGCCTTTCTACAGTTCATG 58.175 43.478 0.00 0.00 35.37 3.07
4488 4960 3.937706 CTCTGCCTTTCTACAGTTCATGG 59.062 47.826 0.00 0.00 35.37 3.66
4489 4961 3.327757 TCTGCCTTTCTACAGTTCATGGT 59.672 43.478 0.00 0.00 35.37 3.55
4490 4962 3.411446 TGCCTTTCTACAGTTCATGGTG 58.589 45.455 0.00 0.00 0.00 4.17
4492 4964 4.263462 TGCCTTTCTACAGTTCATGGTGAT 60.263 41.667 0.00 0.00 0.00 3.06
4495 4967 5.124457 CCTTTCTACAGTTCATGGTGATTGG 59.876 44.000 0.00 0.00 0.00 3.16
4497 4969 5.497464 TCTACAGTTCATGGTGATTGGAA 57.503 39.130 0.00 0.00 0.00 3.53
4502 4974 6.009589 ACAGTTCATGGTGATTGGAATTGTA 58.990 36.000 0.00 0.00 38.09 2.41
4525 5000 8.894731 TGTAACAGAGTTGCAATTTGTACTTAA 58.105 29.630 0.59 0.00 0.00 1.85
4529 5004 6.360681 CAGAGTTGCAATTTGTACTTAACTGC 59.639 38.462 0.59 7.48 0.00 4.40
4557 5032 9.013490 GTTACATAATGCATTTGTTCTCACATC 57.987 33.333 18.75 2.46 31.06 3.06
4587 5062 1.779025 TACGCGGCGTCTCATAGACC 61.779 60.000 32.91 0.00 42.12 3.85
4630 5105 5.513094 GGGTTAGGCAGAGATGCAACATATA 60.513 44.000 2.29 0.00 36.33 0.86
4631 5106 5.409826 GGTTAGGCAGAGATGCAACATATAC 59.590 44.000 2.29 0.00 36.33 1.47
4632 5107 4.013267 AGGCAGAGATGCAACATATACC 57.987 45.455 2.29 0.00 36.33 2.73
4633 5108 3.077359 GGCAGAGATGCAACATATACCC 58.923 50.000 2.29 0.00 36.33 3.69
4634 5109 3.244700 GGCAGAGATGCAACATATACCCT 60.245 47.826 2.29 0.00 36.33 4.34
4635 5110 3.750130 GCAGAGATGCAACATATACCCTG 59.250 47.826 0.00 0.00 34.41 4.45
4636 5111 4.744867 GCAGAGATGCAACATATACCCTGT 60.745 45.833 0.00 0.00 34.41 4.00
4637 5112 5.511373 GCAGAGATGCAACATATACCCTGTA 60.511 44.000 0.00 0.00 34.41 2.74
4638 5113 6.705302 CAGAGATGCAACATATACCCTGTAT 58.295 40.000 0.00 0.00 0.00 2.29
4639 5114 6.815641 CAGAGATGCAACATATACCCTGTATC 59.184 42.308 0.00 0.00 32.86 2.24
4640 5115 6.054860 AGATGCAACATATACCCTGTATCC 57.945 41.667 0.00 0.00 33.05 2.59
4641 5116 5.787494 AGATGCAACATATACCCTGTATCCT 59.213 40.000 0.00 0.00 33.05 3.24
4642 5117 5.483685 TGCAACATATACCCTGTATCCTC 57.516 43.478 0.00 0.00 0.00 3.71
4643 5118 5.155161 TGCAACATATACCCTGTATCCTCT 58.845 41.667 0.00 0.00 0.00 3.69
4662 5137 2.356667 CCCCTGAAACCTCCAGCC 59.643 66.667 0.00 0.00 0.00 4.85
4667 5142 1.151810 TGAAACCTCCAGCCCCTCT 60.152 57.895 0.00 0.00 0.00 3.69
4707 5182 3.492482 GCTCTCTCTAGCACATTCTTCCC 60.492 52.174 0.00 0.00 42.30 3.97
4727 5202 2.365293 CCCCCAGGCTTTTGTTATATGC 59.635 50.000 0.00 0.00 0.00 3.14
4728 5203 3.030291 CCCCAGGCTTTTGTTATATGCA 58.970 45.455 0.00 0.00 0.00 3.96
4729 5204 3.642848 CCCCAGGCTTTTGTTATATGCAT 59.357 43.478 3.79 3.79 0.00 3.96
4730 5205 4.101430 CCCCAGGCTTTTGTTATATGCATT 59.899 41.667 3.54 0.00 0.00 3.56
4731 5206 5.291971 CCCAGGCTTTTGTTATATGCATTC 58.708 41.667 3.54 0.00 0.00 2.67
4732 5207 5.291971 CCAGGCTTTTGTTATATGCATTCC 58.708 41.667 3.54 0.00 0.00 3.01
4733 5208 5.291971 CAGGCTTTTGTTATATGCATTCCC 58.708 41.667 3.54 0.00 0.00 3.97
4734 5209 5.069516 CAGGCTTTTGTTATATGCATTCCCT 59.930 40.000 3.54 0.00 0.00 4.20
4735 5210 5.302823 AGGCTTTTGTTATATGCATTCCCTC 59.697 40.000 3.54 0.00 0.00 4.30
4736 5211 5.509670 GGCTTTTGTTATATGCATTCCCTCC 60.510 44.000 3.54 0.00 0.00 4.30
4737 5212 5.762045 CTTTTGTTATATGCATTCCCTCCG 58.238 41.667 3.54 0.00 0.00 4.63
4738 5213 2.778299 TGTTATATGCATTCCCTCCGC 58.222 47.619 3.54 0.00 0.00 5.54
4739 5214 2.084546 GTTATATGCATTCCCTCCGCC 58.915 52.381 3.54 0.00 0.00 6.13
4740 5215 0.618458 TATATGCATTCCCTCCGCCC 59.382 55.000 3.54 0.00 0.00 6.13
4741 5216 1.136329 ATATGCATTCCCTCCGCCCT 61.136 55.000 3.54 0.00 0.00 5.19
4742 5217 1.352622 TATGCATTCCCTCCGCCCTT 61.353 55.000 3.54 0.00 0.00 3.95
4743 5218 2.043953 GCATTCCCTCCGCCCTTT 60.044 61.111 0.00 0.00 0.00 3.11
4744 5219 1.682344 GCATTCCCTCCGCCCTTTT 60.682 57.895 0.00 0.00 0.00 2.27
4745 5220 1.948721 GCATTCCCTCCGCCCTTTTG 61.949 60.000 0.00 0.00 0.00 2.44
4746 5221 1.000359 ATTCCCTCCGCCCTTTTGG 60.000 57.895 0.00 0.00 39.97 3.28
4747 5222 1.800229 ATTCCCTCCGCCCTTTTGGT 61.800 55.000 0.00 0.00 38.10 3.67
4748 5223 2.676471 CCCTCCGCCCTTTTGGTG 60.676 66.667 0.00 0.00 44.77 4.17
4756 5231 2.636768 GCCCTTTTGGTGATTCTTCG 57.363 50.000 0.00 0.00 38.10 3.79
4757 5232 1.402852 GCCCTTTTGGTGATTCTTCGC 60.403 52.381 0.00 0.00 38.10 4.70
4767 5242 3.751621 GTGATTCTTCGCCTTGACATTG 58.248 45.455 0.00 0.00 0.00 2.82
4768 5243 2.162208 TGATTCTTCGCCTTGACATTGC 59.838 45.455 0.00 0.00 0.00 3.56
4769 5244 0.881118 TTCTTCGCCTTGACATTGCC 59.119 50.000 0.00 0.00 0.00 4.52
4770 5245 0.960364 TCTTCGCCTTGACATTGCCC 60.960 55.000 0.00 0.00 0.00 5.36
4771 5246 1.228398 TTCGCCTTGACATTGCCCA 60.228 52.632 0.00 0.00 0.00 5.36
4772 5247 0.825425 TTCGCCTTGACATTGCCCAA 60.825 50.000 0.00 0.00 0.00 4.12
4773 5248 1.213537 CGCCTTGACATTGCCCAAG 59.786 57.895 10.67 10.67 39.43 3.61
4774 5249 1.243342 CGCCTTGACATTGCCCAAGA 61.243 55.000 16.42 0.00 41.56 3.02
4775 5250 0.529378 GCCTTGACATTGCCCAAGAG 59.471 55.000 16.42 10.14 41.56 2.85
4776 5251 1.180029 CCTTGACATTGCCCAAGAGG 58.820 55.000 16.42 3.22 41.56 3.69
4787 5262 2.609046 CCAAGAGGGTAGGGTCCTG 58.391 63.158 0.00 0.00 34.21 3.86
4788 5263 0.252742 CCAAGAGGGTAGGGTCCTGT 60.253 60.000 0.00 0.00 34.21 4.00
4789 5264 1.196012 CAAGAGGGTAGGGTCCTGTC 58.804 60.000 0.00 0.00 34.21 3.51
4790 5265 0.042881 AAGAGGGTAGGGTCCTGTCC 59.957 60.000 0.00 2.59 34.21 4.02
4791 5266 1.757340 GAGGGTAGGGTCCTGTCCG 60.757 68.421 0.00 0.00 34.21 4.79
4792 5267 2.220786 GAGGGTAGGGTCCTGTCCGA 62.221 65.000 0.00 0.00 34.21 4.55
4793 5268 1.075450 GGGTAGGGTCCTGTCCGAT 60.075 63.158 0.00 0.00 0.00 4.18
4794 5269 1.400530 GGGTAGGGTCCTGTCCGATG 61.401 65.000 0.00 0.00 0.00 3.84
4795 5270 0.396695 GGTAGGGTCCTGTCCGATGA 60.397 60.000 0.00 0.00 0.00 2.92
4796 5271 1.705873 GTAGGGTCCTGTCCGATGAT 58.294 55.000 0.00 0.00 0.00 2.45
4797 5272 1.341531 GTAGGGTCCTGTCCGATGATG 59.658 57.143 0.00 0.00 0.00 3.07
4798 5273 0.032117 AGGGTCCTGTCCGATGATGA 60.032 55.000 0.00 0.00 0.00 2.92
4799 5274 0.390860 GGGTCCTGTCCGATGATGAG 59.609 60.000 0.00 0.00 0.00 2.90
4800 5275 0.249657 GGTCCTGTCCGATGATGAGC 60.250 60.000 0.00 0.00 0.00 4.26
4801 5276 0.596083 GTCCTGTCCGATGATGAGCG 60.596 60.000 0.00 0.00 0.00 5.03
4802 5277 1.037579 TCCTGTCCGATGATGAGCGT 61.038 55.000 0.00 0.00 0.00 5.07
4803 5278 0.873312 CCTGTCCGATGATGAGCGTG 60.873 60.000 0.00 0.00 0.00 5.34
4804 5279 0.101219 CTGTCCGATGATGAGCGTGA 59.899 55.000 0.00 0.00 0.00 4.35
4805 5280 0.101219 TGTCCGATGATGAGCGTGAG 59.899 55.000 0.00 0.00 0.00 3.51
4822 5297 3.217231 GCTACGGGCTAGGCTCAA 58.783 61.111 16.80 0.73 38.06 3.02
4823 5298 1.068250 GCTACGGGCTAGGCTCAAG 59.932 63.158 16.80 11.36 38.06 3.02
4824 5299 1.392710 GCTACGGGCTAGGCTCAAGA 61.393 60.000 16.80 0.00 38.06 3.02
4825 5300 0.671251 CTACGGGCTAGGCTCAAGAG 59.329 60.000 16.80 3.39 0.00 2.85
4826 5301 0.755698 TACGGGCTAGGCTCAAGAGG 60.756 60.000 16.80 0.23 0.00 3.69
4833 5308 3.706373 GGCTCAAGAGGCGGGTCA 61.706 66.667 7.92 0.00 44.15 4.02
4834 5309 2.586792 GCTCAAGAGGCGGGTCAT 59.413 61.111 0.00 0.00 0.00 3.06
4835 5310 1.078143 GCTCAAGAGGCGGGTCATT 60.078 57.895 0.00 0.00 0.00 2.57
4836 5311 1.372087 GCTCAAGAGGCGGGTCATTG 61.372 60.000 0.00 0.00 0.00 2.82
4837 5312 1.372087 CTCAAGAGGCGGGTCATTGC 61.372 60.000 0.00 0.00 0.00 3.56
4843 5318 2.877691 GCGGGTCATTGCCTTGTC 59.122 61.111 0.00 0.00 0.00 3.18
4844 5319 1.675641 GCGGGTCATTGCCTTGTCT 60.676 57.895 0.00 0.00 0.00 3.41
4845 5320 1.926511 GCGGGTCATTGCCTTGTCTG 61.927 60.000 0.00 0.00 0.00 3.51
4846 5321 0.606401 CGGGTCATTGCCTTGTCTGT 60.606 55.000 0.00 0.00 0.00 3.41
4847 5322 0.883833 GGGTCATTGCCTTGTCTGTG 59.116 55.000 0.00 0.00 0.00 3.66
4848 5323 0.242017 GGTCATTGCCTTGTCTGTGC 59.758 55.000 0.00 0.00 0.00 4.57
4849 5324 1.242076 GTCATTGCCTTGTCTGTGCT 58.758 50.000 0.00 0.00 0.00 4.40
4850 5325 1.610522 GTCATTGCCTTGTCTGTGCTT 59.389 47.619 0.00 0.00 0.00 3.91
4851 5326 1.610038 TCATTGCCTTGTCTGTGCTTG 59.390 47.619 0.00 0.00 0.00 4.01
4852 5327 1.610038 CATTGCCTTGTCTGTGCTTGA 59.390 47.619 0.00 0.00 0.00 3.02
4853 5328 1.761449 TTGCCTTGTCTGTGCTTGAA 58.239 45.000 0.00 0.00 0.00 2.69
4854 5329 1.761449 TGCCTTGTCTGTGCTTGAAA 58.239 45.000 0.00 0.00 0.00 2.69
4855 5330 1.677576 TGCCTTGTCTGTGCTTGAAAG 59.322 47.619 0.00 0.00 0.00 2.62
4856 5331 1.000938 GCCTTGTCTGTGCTTGAAAGG 60.001 52.381 0.00 0.00 37.76 3.11
4857 5332 2.301346 CCTTGTCTGTGCTTGAAAGGT 58.699 47.619 0.00 0.00 31.49 3.50
4858 5333 2.291741 CCTTGTCTGTGCTTGAAAGGTC 59.708 50.000 0.00 0.00 31.49 3.85
4859 5334 3.209410 CTTGTCTGTGCTTGAAAGGTCT 58.791 45.455 0.00 0.00 0.00 3.85
4860 5335 2.838736 TGTCTGTGCTTGAAAGGTCTC 58.161 47.619 0.00 0.00 0.00 3.36
4861 5336 1.795286 GTCTGTGCTTGAAAGGTCTCG 59.205 52.381 0.00 0.00 0.00 4.04
4862 5337 1.412710 TCTGTGCTTGAAAGGTCTCGT 59.587 47.619 0.00 0.00 0.00 4.18
4863 5338 2.626266 TCTGTGCTTGAAAGGTCTCGTA 59.374 45.455 0.00 0.00 0.00 3.43
4864 5339 3.069016 TCTGTGCTTGAAAGGTCTCGTAA 59.931 43.478 0.00 0.00 0.00 3.18
4865 5340 3.390135 TGTGCTTGAAAGGTCTCGTAAG 58.610 45.455 0.00 0.00 0.00 2.34
4877 5352 4.670606 CGTAAGAAGCAATGCGCC 57.329 55.556 4.18 0.00 40.97 6.53
4878 5353 1.793581 CGTAAGAAGCAATGCGCCA 59.206 52.632 4.18 0.00 40.97 5.69
4879 5354 0.247814 CGTAAGAAGCAATGCGCCAG 60.248 55.000 4.18 0.00 40.97 4.85
4880 5355 1.086696 GTAAGAAGCAATGCGCCAGA 58.913 50.000 4.18 0.00 44.04 3.86
4881 5356 1.468520 GTAAGAAGCAATGCGCCAGAA 59.531 47.619 4.18 0.00 44.04 3.02
4882 5357 1.180029 AAGAAGCAATGCGCCAGAAT 58.820 45.000 4.18 0.00 44.04 2.40
4883 5358 0.737219 AGAAGCAATGCGCCAGAATC 59.263 50.000 4.18 0.00 44.04 2.52
4884 5359 0.737219 GAAGCAATGCGCCAGAATCT 59.263 50.000 4.18 0.00 44.04 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.952526 TGTGAGTGATCTTGTTACGACTA 57.047 39.130 0.00 0.00 0.00 2.59
1 2 4.848562 TGTGAGTGATCTTGTTACGACT 57.151 40.909 0.00 0.00 0.00 4.18
2 3 5.161358 TGATGTGAGTGATCTTGTTACGAC 58.839 41.667 0.00 0.00 0.00 4.34
3 4 5.385509 TGATGTGAGTGATCTTGTTACGA 57.614 39.130 0.00 0.00 0.00 3.43
4 5 5.405269 TGTTGATGTGAGTGATCTTGTTACG 59.595 40.000 0.00 0.00 0.00 3.18
5 6 6.646653 TCTGTTGATGTGAGTGATCTTGTTAC 59.353 38.462 0.00 0.00 0.00 2.50
6 7 6.758254 TCTGTTGATGTGAGTGATCTTGTTA 58.242 36.000 0.00 0.00 0.00 2.41
7 8 5.614308 TCTGTTGATGTGAGTGATCTTGTT 58.386 37.500 0.00 0.00 0.00 2.83
8 9 5.219343 TCTGTTGATGTGAGTGATCTTGT 57.781 39.130 0.00 0.00 0.00 3.16
9 10 5.390673 GCTTCTGTTGATGTGAGTGATCTTG 60.391 44.000 0.00 0.00 0.00 3.02
10 11 4.694509 GCTTCTGTTGATGTGAGTGATCTT 59.305 41.667 0.00 0.00 0.00 2.40
11 12 4.252073 GCTTCTGTTGATGTGAGTGATCT 58.748 43.478 0.00 0.00 0.00 2.75
12 13 3.999001 TGCTTCTGTTGATGTGAGTGATC 59.001 43.478 0.00 0.00 0.00 2.92
13 14 4.011966 TGCTTCTGTTGATGTGAGTGAT 57.988 40.909 0.00 0.00 0.00 3.06
14 15 3.473923 TGCTTCTGTTGATGTGAGTGA 57.526 42.857 0.00 0.00 0.00 3.41
15 16 3.313249 TGTTGCTTCTGTTGATGTGAGTG 59.687 43.478 0.00 0.00 0.00 3.51
16 17 3.544684 TGTTGCTTCTGTTGATGTGAGT 58.455 40.909 0.00 0.00 0.00 3.41
17 18 4.556942 TTGTTGCTTCTGTTGATGTGAG 57.443 40.909 0.00 0.00 0.00 3.51
18 19 4.338964 ACATTGTTGCTTCTGTTGATGTGA 59.661 37.500 0.00 0.00 0.00 3.58
19 20 4.613944 ACATTGTTGCTTCTGTTGATGTG 58.386 39.130 0.00 0.00 0.00 3.21
20 21 4.924305 ACATTGTTGCTTCTGTTGATGT 57.076 36.364 0.00 0.00 0.00 3.06
21 22 7.568134 GCTTTTACATTGTTGCTTCTGTTGATG 60.568 37.037 0.00 0.00 0.00 3.07
22 23 6.421801 GCTTTTACATTGTTGCTTCTGTTGAT 59.578 34.615 0.00 0.00 0.00 2.57
23 24 5.748152 GCTTTTACATTGTTGCTTCTGTTGA 59.252 36.000 0.00 0.00 0.00 3.18
24 25 5.750067 AGCTTTTACATTGTTGCTTCTGTTG 59.250 36.000 0.00 0.00 0.00 3.33
25 26 5.750067 CAGCTTTTACATTGTTGCTTCTGTT 59.250 36.000 0.00 0.00 0.00 3.16
26 27 5.067674 TCAGCTTTTACATTGTTGCTTCTGT 59.932 36.000 0.00 0.00 0.00 3.41
27 28 5.522456 TCAGCTTTTACATTGTTGCTTCTG 58.478 37.500 0.00 0.00 0.00 3.02
28 29 5.772825 TCAGCTTTTACATTGTTGCTTCT 57.227 34.783 0.00 0.00 0.00 2.85
29 30 6.151691 TGATCAGCTTTTACATTGTTGCTTC 58.848 36.000 0.00 0.00 0.00 3.86
30 31 6.088016 TGATCAGCTTTTACATTGTTGCTT 57.912 33.333 0.00 0.00 0.00 3.91
31 32 5.710513 TGATCAGCTTTTACATTGTTGCT 57.289 34.783 0.00 0.00 0.00 3.91
32 33 6.094719 TGATGATCAGCTTTTACATTGTTGC 58.905 36.000 12.92 0.00 0.00 4.17
33 34 7.201410 GCTTGATGATCAGCTTTTACATTGTTG 60.201 37.037 12.92 0.00 0.00 3.33
34 35 6.810182 GCTTGATGATCAGCTTTTACATTGTT 59.190 34.615 12.92 0.00 0.00 2.83
35 36 6.152323 AGCTTGATGATCAGCTTTTACATTGT 59.848 34.615 12.92 0.00 30.52 2.71
36 37 6.561614 AGCTTGATGATCAGCTTTTACATTG 58.438 36.000 12.92 0.00 30.52 2.82
37 38 6.457934 CGAGCTTGATGATCAGCTTTTACATT 60.458 38.462 12.92 0.00 33.33 2.71
38 39 5.007430 CGAGCTTGATGATCAGCTTTTACAT 59.993 40.000 12.92 0.00 33.33 2.29
39 40 4.330894 CGAGCTTGATGATCAGCTTTTACA 59.669 41.667 12.92 0.00 33.33 2.41
40 41 4.568359 TCGAGCTTGATGATCAGCTTTTAC 59.432 41.667 12.92 6.90 33.33 2.01
41 42 4.758688 TCGAGCTTGATGATCAGCTTTTA 58.241 39.130 12.92 6.70 33.33 1.52
42 43 3.603532 TCGAGCTTGATGATCAGCTTTT 58.396 40.909 12.92 0.00 33.33 2.27
43 44 3.257469 TCGAGCTTGATGATCAGCTTT 57.743 42.857 12.92 0.00 33.33 3.51
44 45 2.975732 TCGAGCTTGATGATCAGCTT 57.024 45.000 12.92 0.00 33.33 3.74
45 46 3.472283 AATCGAGCTTGATGATCAGCT 57.528 42.857 17.44 15.76 34.95 4.24
46 47 4.907188 CTAATCGAGCTTGATGATCAGC 57.093 45.455 17.44 3.40 0.00 4.26
59 60 2.866156 TGAATCCGCAAAGCTAATCGAG 59.134 45.455 0.00 0.00 0.00 4.04
60 61 2.866156 CTGAATCCGCAAAGCTAATCGA 59.134 45.455 0.00 0.00 0.00 3.59
61 62 2.609459 ACTGAATCCGCAAAGCTAATCG 59.391 45.455 0.00 0.00 0.00 3.34
62 63 3.623060 TGACTGAATCCGCAAAGCTAATC 59.377 43.478 0.00 0.00 0.00 1.75
63 64 3.609853 TGACTGAATCCGCAAAGCTAAT 58.390 40.909 0.00 0.00 0.00 1.73
64 65 3.052455 TGACTGAATCCGCAAAGCTAA 57.948 42.857 0.00 0.00 0.00 3.09
65 66 2.760634 TGACTGAATCCGCAAAGCTA 57.239 45.000 0.00 0.00 0.00 3.32
66 67 1.808945 CTTGACTGAATCCGCAAAGCT 59.191 47.619 0.00 0.00 0.00 3.74
67 68 1.135575 CCTTGACTGAATCCGCAAAGC 60.136 52.381 0.00 0.00 0.00 3.51
68 69 2.154462 ACCTTGACTGAATCCGCAAAG 58.846 47.619 0.00 0.00 0.00 2.77
69 70 2.151202 GACCTTGACTGAATCCGCAAA 58.849 47.619 0.00 0.00 0.00 3.68
70 71 1.610624 GGACCTTGACTGAATCCGCAA 60.611 52.381 0.00 0.00 0.00 4.85
71 72 0.036388 GGACCTTGACTGAATCCGCA 60.036 55.000 0.00 0.00 0.00 5.69
72 73 0.250513 AGGACCTTGACTGAATCCGC 59.749 55.000 0.00 0.00 34.46 5.54
73 74 2.770164 AAGGACCTTGACTGAATCCG 57.230 50.000 5.76 0.00 34.46 4.18
74 75 3.198853 AGCTAAGGACCTTGACTGAATCC 59.801 47.826 17.47 0.00 0.00 3.01
75 76 4.161377 AGAGCTAAGGACCTTGACTGAATC 59.839 45.833 17.47 5.37 0.00 2.52
76 77 4.100373 AGAGCTAAGGACCTTGACTGAAT 58.900 43.478 17.47 0.31 0.00 2.57
77 78 3.511477 AGAGCTAAGGACCTTGACTGAA 58.489 45.455 17.47 0.00 0.00 3.02
78 79 3.176924 AGAGCTAAGGACCTTGACTGA 57.823 47.619 17.47 0.00 0.00 3.41
79 80 3.674682 CGAAGAGCTAAGGACCTTGACTG 60.675 52.174 17.47 5.63 0.00 3.51
80 81 2.494073 CGAAGAGCTAAGGACCTTGACT 59.506 50.000 17.47 13.23 0.00 3.41
81 82 2.231721 ACGAAGAGCTAAGGACCTTGAC 59.768 50.000 17.47 8.50 0.00 3.18
82 83 2.526432 ACGAAGAGCTAAGGACCTTGA 58.474 47.619 17.47 0.47 0.00 3.02
83 84 2.996621 CAACGAAGAGCTAAGGACCTTG 59.003 50.000 17.47 8.02 0.00 3.61
84 85 2.613223 GCAACGAAGAGCTAAGGACCTT 60.613 50.000 12.41 12.41 0.00 3.50
85 86 1.066787 GCAACGAAGAGCTAAGGACCT 60.067 52.381 0.00 0.00 0.00 3.85
86 87 1.066787 AGCAACGAAGAGCTAAGGACC 60.067 52.381 0.00 0.00 40.08 4.46
87 88 2.371910 AGCAACGAAGAGCTAAGGAC 57.628 50.000 0.00 0.00 40.08 3.85
88 89 4.081642 ACATAAGCAACGAAGAGCTAAGGA 60.082 41.667 0.00 0.00 40.83 3.36
89 90 4.184629 ACATAAGCAACGAAGAGCTAAGG 58.815 43.478 0.00 0.00 40.83 2.69
90 91 5.805486 TGTACATAAGCAACGAAGAGCTAAG 59.195 40.000 0.00 0.00 40.83 2.18
91 92 5.575606 GTGTACATAAGCAACGAAGAGCTAA 59.424 40.000 0.00 0.00 40.83 3.09
92 93 5.100259 GTGTACATAAGCAACGAAGAGCTA 58.900 41.667 0.00 0.00 40.83 3.32
93 94 3.927142 GTGTACATAAGCAACGAAGAGCT 59.073 43.478 0.00 0.00 43.07 4.09
94 95 3.678072 TGTGTACATAAGCAACGAAGAGC 59.322 43.478 0.00 0.00 0.00 4.09
95 96 5.839262 TTGTGTACATAAGCAACGAAGAG 57.161 39.130 0.00 0.00 0.00 2.85
96 97 5.839262 CTTGTGTACATAAGCAACGAAGA 57.161 39.130 17.93 0.00 0.00 2.87
105 106 5.877012 ACCTTGATCTGCTTGTGTACATAAG 59.123 40.000 23.71 23.71 33.38 1.73
106 107 5.804639 ACCTTGATCTGCTTGTGTACATAA 58.195 37.500 0.00 0.96 0.00 1.90
107 108 5.046663 TGACCTTGATCTGCTTGTGTACATA 60.047 40.000 0.00 0.00 0.00 2.29
108 109 4.256920 GACCTTGATCTGCTTGTGTACAT 58.743 43.478 0.00 0.00 0.00 2.29
109 110 3.070878 TGACCTTGATCTGCTTGTGTACA 59.929 43.478 0.00 0.00 0.00 2.90
110 111 3.664107 TGACCTTGATCTGCTTGTGTAC 58.336 45.455 0.00 0.00 0.00 2.90
111 112 4.350368 TTGACCTTGATCTGCTTGTGTA 57.650 40.909 0.00 0.00 0.00 2.90
112 113 2.936919 TGACCTTGATCTGCTTGTGT 57.063 45.000 0.00 0.00 0.00 3.72
113 114 3.504906 ACATTGACCTTGATCTGCTTGTG 59.495 43.478 0.00 0.00 0.00 3.33
114 115 3.755378 GACATTGACCTTGATCTGCTTGT 59.245 43.478 0.00 0.00 0.00 3.16
115 116 3.128242 GGACATTGACCTTGATCTGCTTG 59.872 47.826 0.00 0.00 0.00 4.01
116 117 3.350833 GGACATTGACCTTGATCTGCTT 58.649 45.455 0.00 0.00 0.00 3.91
117 118 2.356535 GGGACATTGACCTTGATCTGCT 60.357 50.000 5.17 0.00 0.00 4.24
118 119 2.019984 GGGACATTGACCTTGATCTGC 58.980 52.381 5.17 0.00 0.00 4.26
119 120 2.283298 CGGGACATTGACCTTGATCTG 58.717 52.381 5.17 0.00 0.00 2.90
120 121 1.210478 CCGGGACATTGACCTTGATCT 59.790 52.381 5.17 0.00 0.00 2.75
121 122 1.209504 TCCGGGACATTGACCTTGATC 59.790 52.381 0.00 0.00 0.00 2.92
122 123 1.285280 TCCGGGACATTGACCTTGAT 58.715 50.000 0.00 0.00 0.00 2.57
123 124 1.060729 TTCCGGGACATTGACCTTGA 58.939 50.000 0.00 0.12 0.00 3.02
124 125 1.812571 CTTTCCGGGACATTGACCTTG 59.187 52.381 0.00 0.00 0.00 3.61
125 126 1.271926 CCTTTCCGGGACATTGACCTT 60.272 52.381 0.00 0.00 0.00 3.50
126 127 0.328258 CCTTTCCGGGACATTGACCT 59.672 55.000 0.00 0.00 0.00 3.85
127 128 0.326927 TCCTTTCCGGGACATTGACC 59.673 55.000 0.00 0.00 0.00 4.02
128 129 3.948735 TCCTTTCCGGGACATTGAC 57.051 52.632 0.00 0.00 0.00 3.18
135 136 3.055385 CAGAAACTATGTCCTTTCCGGGA 60.055 47.826 0.00 0.00 0.00 5.14
136 137 3.270877 CAGAAACTATGTCCTTTCCGGG 58.729 50.000 0.00 0.00 0.00 5.73
137 138 3.270877 CCAGAAACTATGTCCTTTCCGG 58.729 50.000 0.00 0.00 0.00 5.14
138 139 3.939066 ACCAGAAACTATGTCCTTTCCG 58.061 45.455 0.00 0.00 0.00 4.30
139 140 5.561679 AGAACCAGAAACTATGTCCTTTCC 58.438 41.667 0.00 0.00 0.00 3.13
140 141 6.314152 GCTAGAACCAGAAACTATGTCCTTTC 59.686 42.308 0.00 0.00 0.00 2.62
141 142 6.174049 GCTAGAACCAGAAACTATGTCCTTT 58.826 40.000 0.00 0.00 0.00 3.11
142 143 5.248477 TGCTAGAACCAGAAACTATGTCCTT 59.752 40.000 0.00 0.00 0.00 3.36
143 144 4.777896 TGCTAGAACCAGAAACTATGTCCT 59.222 41.667 0.00 0.00 0.00 3.85
144 145 5.086104 TGCTAGAACCAGAAACTATGTCC 57.914 43.478 0.00 0.00 0.00 4.02
145 146 6.341316 TCATGCTAGAACCAGAAACTATGTC 58.659 40.000 0.00 0.00 0.00 3.06
146 147 6.070538 ACTCATGCTAGAACCAGAAACTATGT 60.071 38.462 0.00 0.00 0.00 2.29
147 148 6.344500 ACTCATGCTAGAACCAGAAACTATG 58.656 40.000 0.00 0.00 0.00 2.23
148 149 6.407525 GGACTCATGCTAGAACCAGAAACTAT 60.408 42.308 0.00 0.00 0.00 2.12
149 150 5.105310 GGACTCATGCTAGAACCAGAAACTA 60.105 44.000 0.00 0.00 0.00 2.24
150 151 4.323104 GGACTCATGCTAGAACCAGAAACT 60.323 45.833 0.00 0.00 0.00 2.66
151 152 3.935828 GGACTCATGCTAGAACCAGAAAC 59.064 47.826 0.00 0.00 0.00 2.78
152 153 3.055094 GGGACTCATGCTAGAACCAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
153 154 2.501723 GGGACTCATGCTAGAACCAGAA 59.498 50.000 0.00 0.00 0.00 3.02
154 155 2.111384 GGGACTCATGCTAGAACCAGA 58.889 52.381 0.00 0.00 0.00 3.86
155 156 2.114616 AGGGACTCATGCTAGAACCAG 58.885 52.381 0.00 0.00 0.00 4.00
156 157 2.254152 AGGGACTCATGCTAGAACCA 57.746 50.000 0.00 0.00 0.00 3.67
157 158 2.501723 TGAAGGGACTCATGCTAGAACC 59.498 50.000 0.00 0.00 38.49 3.62
158 159 3.895232 TGAAGGGACTCATGCTAGAAC 57.105 47.619 0.00 0.00 38.49 3.01
159 160 4.412796 CATGAAGGGACTCATGCTAGAA 57.587 45.455 0.00 0.00 38.49 2.10
165 166 3.278668 AGAAGCATGAAGGGACTCATG 57.721 47.619 8.83 8.83 42.54 3.07
166 167 4.018597 AGAAAGAAGCATGAAGGGACTCAT 60.019 41.667 0.00 0.00 38.49 2.90
167 168 3.328931 AGAAAGAAGCATGAAGGGACTCA 59.671 43.478 0.00 0.00 38.49 3.41
168 169 3.688673 CAGAAAGAAGCATGAAGGGACTC 59.311 47.826 0.00 0.00 38.49 3.36
170 171 3.416156 ACAGAAAGAAGCATGAAGGGAC 58.584 45.455 0.00 0.00 0.00 4.46
171 172 3.795688 ACAGAAAGAAGCATGAAGGGA 57.204 42.857 0.00 0.00 0.00 4.20
172 173 5.964958 TTTACAGAAAGAAGCATGAAGGG 57.035 39.130 0.00 0.00 0.00 3.95
173 174 6.309737 GCATTTTACAGAAAGAAGCATGAAGG 59.690 38.462 0.00 0.00 0.00 3.46
174 175 6.864685 TGCATTTTACAGAAAGAAGCATGAAG 59.135 34.615 0.00 0.00 0.00 3.02
175 176 6.642131 GTGCATTTTACAGAAAGAAGCATGAA 59.358 34.615 0.00 0.00 33.20 2.57
176 177 6.151691 GTGCATTTTACAGAAAGAAGCATGA 58.848 36.000 0.00 0.00 33.20 3.07
177 178 5.346822 GGTGCATTTTACAGAAAGAAGCATG 59.653 40.000 0.00 0.00 33.20 4.06
178 179 5.244626 AGGTGCATTTTACAGAAAGAAGCAT 59.755 36.000 0.00 0.00 33.20 3.79
179 180 4.584325 AGGTGCATTTTACAGAAAGAAGCA 59.416 37.500 0.00 0.00 0.00 3.91
180 181 4.919754 CAGGTGCATTTTACAGAAAGAAGC 59.080 41.667 0.00 0.00 0.00 3.86
181 182 6.317789 TCAGGTGCATTTTACAGAAAGAAG 57.682 37.500 0.00 0.00 0.00 2.85
182 183 6.489700 TGATCAGGTGCATTTTACAGAAAGAA 59.510 34.615 0.00 0.00 0.00 2.52
183 184 6.003326 TGATCAGGTGCATTTTACAGAAAGA 58.997 36.000 0.00 0.00 0.00 2.52
184 185 6.258230 TGATCAGGTGCATTTTACAGAAAG 57.742 37.500 0.00 0.00 0.00 2.62
185 186 6.433716 TGATGATCAGGTGCATTTTACAGAAA 59.566 34.615 0.09 0.00 0.00 2.52
186 187 5.945191 TGATGATCAGGTGCATTTTACAGAA 59.055 36.000 0.09 0.00 0.00 3.02
187 188 5.499313 TGATGATCAGGTGCATTTTACAGA 58.501 37.500 0.09 0.00 0.00 3.41
188 189 5.823209 TGATGATCAGGTGCATTTTACAG 57.177 39.130 0.09 0.00 0.00 2.74
189 190 6.778834 ATTGATGATCAGGTGCATTTTACA 57.221 33.333 0.09 0.00 0.00 2.41
190 191 9.241317 CTTTATTGATGATCAGGTGCATTTTAC 57.759 33.333 0.09 0.00 0.00 2.01
191 192 8.970020 ACTTTATTGATGATCAGGTGCATTTTA 58.030 29.630 0.09 0.00 0.00 1.52
192 193 7.844009 ACTTTATTGATGATCAGGTGCATTTT 58.156 30.769 0.09 0.00 0.00 1.82
193 194 7.414222 ACTTTATTGATGATCAGGTGCATTT 57.586 32.000 0.09 0.00 0.00 2.32
194 195 7.414222 AACTTTATTGATGATCAGGTGCATT 57.586 32.000 0.09 0.00 0.00 3.56
195 196 7.414222 AAACTTTATTGATGATCAGGTGCAT 57.586 32.000 0.09 0.00 0.00 3.96
196 197 6.839124 AAACTTTATTGATGATCAGGTGCA 57.161 33.333 0.09 0.00 0.00 4.57
197 198 7.542025 AGAAAACTTTATTGATGATCAGGTGC 58.458 34.615 0.09 0.00 0.00 5.01
198 199 9.350357 CAAGAAAACTTTATTGATGATCAGGTG 57.650 33.333 0.09 0.00 40.72 4.00
199 200 9.082313 ACAAGAAAACTTTATTGATGATCAGGT 57.918 29.630 14.63 0.00 40.72 4.00
200 201 9.350357 CACAAGAAAACTTTATTGATGATCAGG 57.650 33.333 14.63 0.00 40.72 3.86
201 202 9.903682 ACACAAGAAAACTTTATTGATGATCAG 57.096 29.630 14.63 0.00 40.72 2.90
233 234 5.945191 CCCAGTTGCCCATGAAAATATTTTT 59.055 36.000 14.45 0.00 0.00 1.94
234 235 5.014018 ACCCAGTTGCCCATGAAAATATTTT 59.986 36.000 13.24 13.24 0.00 1.82
235 236 4.535692 ACCCAGTTGCCCATGAAAATATTT 59.464 37.500 0.00 0.00 0.00 1.40
266 267 2.481441 TCCAGGAGTTAGGCACATGAT 58.519 47.619 0.00 0.00 0.00 2.45
314 315 6.698008 TCTTCTTCTTTCAATTCAAGCACA 57.302 33.333 0.00 0.00 0.00 4.57
340 341 9.542462 CTAATCATCTTCCATTGCAATGATTTT 57.458 29.630 35.47 19.18 41.77 1.82
422 424 0.892063 GAGTGAGTGAGTGAGGGGAC 59.108 60.000 0.00 0.00 0.00 4.46
801 803 2.167037 TGGGTTTTGGGAGGGGGAG 61.167 63.158 0.00 0.00 0.00 4.30
802 804 2.037128 TGGGTTTTGGGAGGGGGA 60.037 61.111 0.00 0.00 0.00 4.81
822 824 3.082055 GGAAGGAGACGGGTCCCC 61.082 72.222 1.00 0.00 37.31 4.81
836 838 3.256824 AAACGGCGGATTCGGGGAA 62.257 57.895 13.24 0.00 36.79 3.97
1102 1104 2.712077 CGCAAGAAAATCGCACCAC 58.288 52.632 0.00 0.00 43.02 4.16
1108 1113 3.588337 GCGCGCGCAAGAAAATCG 61.588 61.111 46.11 12.36 41.49 3.34
1141 1146 0.249238 ATCAGCCTCTAAAGCGAGCG 60.249 55.000 0.00 0.00 34.64 5.03
1142 1147 1.216122 CATCAGCCTCTAAAGCGAGC 58.784 55.000 0.00 0.00 34.64 5.03
1143 1148 2.200067 CACATCAGCCTCTAAAGCGAG 58.800 52.381 0.00 0.00 34.64 5.03
1144 1149 1.550524 ACACATCAGCCTCTAAAGCGA 59.449 47.619 0.00 0.00 34.64 4.93
1145 1150 2.015736 ACACATCAGCCTCTAAAGCG 57.984 50.000 0.00 0.00 34.64 4.68
1187 1192 3.494048 GGATGAGCTCATTCAGGTACTGG 60.494 52.174 29.26 0.00 46.82 4.00
1191 1196 3.378512 AGTGGATGAGCTCATTCAGGTA 58.621 45.455 33.68 12.88 42.18 3.08
1194 1199 2.802415 CGGAGTGGATGAGCTCATTCAG 60.802 54.545 33.68 21.24 42.18 3.02
1195 1200 1.137675 CGGAGTGGATGAGCTCATTCA 59.862 52.381 30.29 30.29 39.44 2.57
1196 1201 1.863267 CGGAGTGGATGAGCTCATTC 58.137 55.000 29.26 27.49 36.57 2.67
1197 1202 0.179062 GCGGAGTGGATGAGCTCATT 60.179 55.000 29.26 14.38 36.57 2.57
1211 1216 2.094659 CAGTTGGTACGCAGCGGAG 61.095 63.158 21.15 0.00 0.00 4.63
1334 1339 1.265365 GTTCAGTTCAGTTCAGCAGCC 59.735 52.381 0.00 0.00 0.00 4.85
1379 1384 3.605231 GCAAAGTGCATGCAATTCAACAC 60.605 43.478 31.05 15.97 44.26 3.32
1396 1401 1.160137 GTGGCTGGTCTAGTGCAAAG 58.840 55.000 0.00 0.00 0.00 2.77
1405 1410 2.875296 TGCAAAATTAGTGGCTGGTCT 58.125 42.857 0.00 0.00 0.00 3.85
1426 1431 3.504906 CACACTCCAAATGATGCTGTCTT 59.495 43.478 0.00 0.00 0.00 3.01
1509 1575 6.377146 GGCCTCTGTGAATATAAGTGGAAAAA 59.623 38.462 0.00 0.00 0.00 1.94
1516 1582 7.071196 TGACTATTGGCCTCTGTGAATATAAGT 59.929 37.037 3.32 0.00 0.00 2.24
1533 1599 5.449588 GGTCAAAGATGCACATGACTATTGG 60.450 44.000 17.30 0.00 41.42 3.16
1535 1601 4.333649 CGGTCAAAGATGCACATGACTATT 59.666 41.667 17.30 0.00 41.42 1.73
1536 1602 3.873361 CGGTCAAAGATGCACATGACTAT 59.127 43.478 17.30 0.00 41.42 2.12
1549 1615 4.219944 ACAATGTACTAGCTCGGTCAAAGA 59.780 41.667 0.00 0.00 0.00 2.52
1550 1616 4.495422 ACAATGTACTAGCTCGGTCAAAG 58.505 43.478 0.00 0.00 0.00 2.77
1622 1698 2.027377 TGGGGCATTGCAAAATTACTGG 60.027 45.455 11.39 0.00 0.00 4.00
1641 1717 6.286758 AGAAACATACTACAGATGATGCTGG 58.713 40.000 0.00 0.00 40.20 4.85
1738 1814 4.823989 CCTCAACCCTCTGGCAAATATAAG 59.176 45.833 0.00 0.00 33.59 1.73
1748 1824 0.543749 CCTTAGCCTCAACCCTCTGG 59.456 60.000 0.00 0.00 37.80 3.86
1801 1877 4.825085 ACGAAAAAGTGCAAAAGGATCCTA 59.175 37.500 16.55 0.00 0.00 2.94
1823 1899 5.106396 GCATGCACATATCTCCCAAGAATAC 60.106 44.000 14.21 0.00 34.49 1.89
1886 1962 8.982685 ACTTCATAAGCATAACGAGATAATGTG 58.017 33.333 0.00 0.00 0.00 3.21
1891 1967 6.861572 CCGAACTTCATAAGCATAACGAGATA 59.138 38.462 0.00 0.00 0.00 1.98
1914 1990 0.034616 TGCAAAGGAAAATTGGGCCG 59.965 50.000 0.00 0.00 0.00 6.13
1917 1993 3.421919 ACCATGCAAAGGAAAATTGGG 57.578 42.857 14.81 0.00 0.00 4.12
1982 2058 1.144969 ACGACGAAATTGCACACGAT 58.855 45.000 0.00 0.00 0.00 3.73
1985 2061 2.034076 GTCAACGACGAAATTGCACAC 58.966 47.619 0.00 0.00 0.00 3.82
2004 2085 6.381420 AGGACAATGTAATGTACTAGCTCAGT 59.619 38.462 0.00 0.00 42.76 3.41
2082 2163 8.613482 GCTAATTATTGACAGGTAAAGGAAGAC 58.387 37.037 0.00 0.00 0.00 3.01
2087 2168 7.682021 GCCTTGCTAATTATTGACAGGTAAAGG 60.682 40.741 0.00 0.00 0.00 3.11
2110 2191 9.984190 TTTGATTAAACTAAATAAAAACCGCCT 57.016 25.926 0.00 0.00 0.00 5.52
2125 2206 9.410556 GTGCAAGTACATGAATTTGATTAAACT 57.589 29.630 0.00 0.00 0.00 2.66
2158 2241 4.843147 TGTTAAGAACAGTGAAACATGCG 58.157 39.130 0.00 0.00 41.43 4.73
2279 2362 1.017177 TCCACGGTTAGTTGATGCGC 61.017 55.000 0.00 0.00 0.00 6.09
2391 2477 2.383527 GGCAGTCGAAGGAAGTGCG 61.384 63.158 0.00 0.00 35.97 5.34
2451 2537 1.072266 TGTTAGATGTTGGGCCACCT 58.928 50.000 5.23 3.79 37.76 4.00
2880 2978 1.338136 CCTCTTGCTCGGGTATGGGT 61.338 60.000 0.00 0.00 0.00 4.51
3039 3140 2.171840 TCCAGGTAGAACTGAGCAGAC 58.828 52.381 4.21 0.00 40.97 3.51
3080 3196 0.963355 GTCCCTCGAGACACTGAGCT 60.963 60.000 15.71 0.00 36.73 4.09
3261 3377 1.452651 CGGGCGTACCTCCTCTGTA 60.453 63.158 0.00 0.00 36.97 2.74
3273 3389 1.644786 GCAGCTCATTAAACGGGCGT 61.645 55.000 0.00 0.00 0.00 5.68
3274 3390 1.062525 GCAGCTCATTAAACGGGCG 59.937 57.895 0.00 0.00 0.00 6.13
3288 3404 2.279741 TGAACCTCATCATTACGCAGC 58.720 47.619 0.00 0.00 0.00 5.25
3293 3409 4.878397 CCACCTTCTGAACCTCATCATTAC 59.122 45.833 0.00 0.00 0.00 1.89
3298 3417 1.630878 ACCCACCTTCTGAACCTCATC 59.369 52.381 0.00 0.00 0.00 2.92
3325 3444 8.169977 TCTTTTGCATTTGAAAGTGATCTACT 57.830 30.769 8.14 0.00 42.89 2.57
3339 3458 6.989659 ACTTGTCATCATCTCTTTTGCATTT 58.010 32.000 0.00 0.00 0.00 2.32
3363 3482 0.037303 CTGCTGGCTTCTTTGAGGGA 59.963 55.000 0.00 0.00 0.00 4.20
3376 3495 0.535780 TGTTGAAGCTGGTCTGCTGG 60.536 55.000 3.20 0.00 43.24 4.85
3392 3523 2.829720 TCGAGGTACACTGCCTTATGTT 59.170 45.455 0.00 0.00 36.29 2.71
3457 3588 9.530633 AAAGATCGGTACTATAACAGAATGAAC 57.469 33.333 0.00 0.00 39.69 3.18
3601 3917 4.410492 AAGATCGCAGAAACATTGACAC 57.590 40.909 0.00 0.00 43.58 3.67
3606 3922 4.631813 GGTGAGTAAGATCGCAGAAACATT 59.368 41.667 0.00 0.00 43.58 2.71
3617 3933 4.414337 AAGGAGCATGGTGAGTAAGATC 57.586 45.455 0.00 0.00 0.00 2.75
3692 4008 1.612726 GGATGGCAGTCTTTCACAGCT 60.613 52.381 0.00 0.00 37.65 4.24
3697 4013 3.349927 CTGAATGGATGGCAGTCTTTCA 58.650 45.455 15.24 15.24 0.00 2.69
3863 4179 2.550830 ACTGTAGTTGCCTTGACAGG 57.449 50.000 5.91 0.00 42.93 4.00
3887 4203 2.916702 TAGCTAGTGCACCATCCATG 57.083 50.000 14.63 0.00 42.74 3.66
3970 4420 1.586564 CCTCCGAGCGATCGACAAC 60.587 63.158 26.68 0.00 34.64 3.32
3972 4422 2.437895 ACCTCCGAGCGATCGACA 60.438 61.111 26.68 9.67 34.64 4.35
3974 4424 0.745486 TAACACCTCCGAGCGATCGA 60.745 55.000 26.68 9.82 34.64 3.59
3975 4425 0.317103 CTAACACCTCCGAGCGATCG 60.317 60.000 17.57 17.57 0.00 3.69
3977 4427 1.405821 CTTCTAACACCTCCGAGCGAT 59.594 52.381 0.00 0.00 0.00 4.58
3978 4428 0.809385 CTTCTAACACCTCCGAGCGA 59.191 55.000 0.00 0.00 0.00 4.93
3979 4429 0.526662 ACTTCTAACACCTCCGAGCG 59.473 55.000 0.00 0.00 0.00 5.03
3980 4430 3.193056 ACTTACTTCTAACACCTCCGAGC 59.807 47.826 0.00 0.00 0.00 5.03
3981 4431 6.506500 TTACTTACTTCTAACACCTCCGAG 57.493 41.667 0.00 0.00 0.00 4.63
4024 4475 5.944599 GGTAGTGCATAGATACAGGCTACTA 59.055 44.000 0.00 0.00 0.00 1.82
4076 4527 4.132122 TCACATATCCATCTGGGCTAGA 57.868 45.455 2.05 2.05 40.37 2.43
4149 4603 7.439655 GCTAATGGTTACAGAGTCTCCATAAAG 59.560 40.741 10.64 11.63 37.84 1.85
4178 4632 5.725325 TCATTTCATTTCATTGTGCTGGA 57.275 34.783 0.00 0.00 0.00 3.86
4181 4635 5.935789 CCCTTTCATTTCATTTCATTGTGCT 59.064 36.000 0.00 0.00 0.00 4.40
4264 4720 7.039714 TGCTACTCAAGATCAAGTTCAGTTAGA 60.040 37.037 0.00 0.00 0.00 2.10
4265 4721 7.093354 TGCTACTCAAGATCAAGTTCAGTTAG 58.907 38.462 0.00 0.00 0.00 2.34
4274 4730 6.148315 TGTGAACAATGCTACTCAAGATCAAG 59.852 38.462 0.00 0.00 0.00 3.02
4275 4731 5.997129 TGTGAACAATGCTACTCAAGATCAA 59.003 36.000 0.00 0.00 0.00 2.57
4292 4748 0.535553 TGATGCTGCTGCTGTGAACA 60.536 50.000 17.00 0.00 40.48 3.18
4337 4793 9.860898 GATAAATTCTACCAGCATTGACTTTTT 57.139 29.630 0.00 0.00 0.00 1.94
4338 4794 8.184192 CGATAAATTCTACCAGCATTGACTTTT 58.816 33.333 0.00 0.00 0.00 2.27
4341 4797 6.582636 TCGATAAATTCTACCAGCATTGACT 58.417 36.000 0.00 0.00 0.00 3.41
4349 4805 8.344831 TGCATTCATTTCGATAAATTCTACCAG 58.655 33.333 0.00 0.00 32.87 4.00
4355 4814 7.433131 TCAGCTTGCATTCATTTCGATAAATTC 59.567 33.333 0.00 0.00 32.87 2.17
4360 4819 4.035558 GGTCAGCTTGCATTCATTTCGATA 59.964 41.667 0.00 0.00 0.00 2.92
4431 4903 7.459795 TGGTGTTCATGCATATAACAAAAGA 57.540 32.000 21.81 8.80 35.08 2.52
4484 4956 6.151648 ACTCTGTTACAATTCCAATCACCATG 59.848 38.462 0.00 0.00 0.00 3.66
4485 4957 6.248433 ACTCTGTTACAATTCCAATCACCAT 58.752 36.000 0.00 0.00 0.00 3.55
4487 4959 6.381801 CAACTCTGTTACAATTCCAATCACC 58.618 40.000 0.00 0.00 0.00 4.02
4488 4960 5.858581 GCAACTCTGTTACAATTCCAATCAC 59.141 40.000 0.00 0.00 0.00 3.06
4489 4961 5.534278 TGCAACTCTGTTACAATTCCAATCA 59.466 36.000 0.00 0.00 0.00 2.57
4490 4962 6.012658 TGCAACTCTGTTACAATTCCAATC 57.987 37.500 0.00 0.00 0.00 2.67
4492 4964 5.843673 TTGCAACTCTGTTACAATTCCAA 57.156 34.783 0.00 0.00 0.00 3.53
4495 4967 7.698836 ACAAATTGCAACTCTGTTACAATTC 57.301 32.000 16.88 0.00 39.37 2.17
4497 4969 7.940850 AGTACAAATTGCAACTCTGTTACAAT 58.059 30.769 0.00 3.79 32.53 2.71
4502 4974 7.915397 CAGTTAAGTACAAATTGCAACTCTGTT 59.085 33.333 0.00 0.00 0.00 3.16
4525 5000 6.271488 ACAAATGCATTATGTAACAGCAGT 57.729 33.333 13.39 0.00 38.75 4.40
4529 5004 8.022550 TGTGAGAACAAATGCATTATGTAACAG 58.977 33.333 13.39 0.00 0.00 3.16
4557 5032 1.423845 GCCGCGTACATTGTTCAGG 59.576 57.895 4.92 0.00 0.00 3.86
4587 5062 5.612725 ACCCTAACCCAATTGCATAAATG 57.387 39.130 0.00 0.00 0.00 2.32
4630 5105 0.936863 AGGGGGAGAGGATACAGGGT 60.937 60.000 0.00 0.00 41.41 4.34
4631 5106 0.472734 CAGGGGGAGAGGATACAGGG 60.473 65.000 0.00 0.00 41.41 4.45
4632 5107 0.563173 TCAGGGGGAGAGGATACAGG 59.437 60.000 0.00 0.00 41.41 4.00
4633 5108 2.436173 GTTTCAGGGGGAGAGGATACAG 59.564 54.545 0.00 0.00 41.41 2.74
4634 5109 2.478292 GTTTCAGGGGGAGAGGATACA 58.522 52.381 0.00 0.00 41.41 2.29
4635 5110 1.769465 GGTTTCAGGGGGAGAGGATAC 59.231 57.143 0.00 0.00 0.00 2.24
4636 5111 1.657162 AGGTTTCAGGGGGAGAGGATA 59.343 52.381 0.00 0.00 0.00 2.59
4637 5112 0.423544 AGGTTTCAGGGGGAGAGGAT 59.576 55.000 0.00 0.00 0.00 3.24
4638 5113 0.252742 GAGGTTTCAGGGGGAGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
4639 5114 1.275421 GGAGGTTTCAGGGGGAGAGG 61.275 65.000 0.00 0.00 0.00 3.69
4640 5115 0.547712 TGGAGGTTTCAGGGGGAGAG 60.548 60.000 0.00 0.00 0.00 3.20
4641 5116 0.547712 CTGGAGGTTTCAGGGGGAGA 60.548 60.000 0.00 0.00 0.00 3.71
4642 5117 1.994463 CTGGAGGTTTCAGGGGGAG 59.006 63.158 0.00 0.00 0.00 4.30
4643 5118 2.231380 GCTGGAGGTTTCAGGGGGA 61.231 63.158 0.00 0.00 33.16 4.81
4662 5137 1.199615 GGAGGAAGAACAGGAGAGGG 58.800 60.000 0.00 0.00 0.00 4.30
4707 5182 3.030291 TGCATATAACAAAAGCCTGGGG 58.970 45.455 0.00 0.00 0.00 4.96
4716 5191 3.568007 GCGGAGGGAATGCATATAACAAA 59.432 43.478 0.00 0.00 0.00 2.83
4717 5192 3.146066 GCGGAGGGAATGCATATAACAA 58.854 45.455 0.00 0.00 0.00 2.83
4718 5193 2.552155 GGCGGAGGGAATGCATATAACA 60.552 50.000 0.00 0.00 0.00 2.41
4719 5194 2.084546 GGCGGAGGGAATGCATATAAC 58.915 52.381 0.00 0.00 0.00 1.89
4720 5195 1.004277 GGGCGGAGGGAATGCATATAA 59.996 52.381 0.00 0.00 0.00 0.98
4721 5196 0.618458 GGGCGGAGGGAATGCATATA 59.382 55.000 0.00 0.00 0.00 0.86
4722 5197 1.136329 AGGGCGGAGGGAATGCATAT 61.136 55.000 0.00 0.00 0.00 1.78
4723 5198 1.352622 AAGGGCGGAGGGAATGCATA 61.353 55.000 0.00 0.00 0.00 3.14
4724 5199 2.228841 AAAGGGCGGAGGGAATGCAT 62.229 55.000 0.00 0.00 0.00 3.96
4725 5200 2.439553 AAAAGGGCGGAGGGAATGCA 62.440 55.000 0.00 0.00 0.00 3.96
4726 5201 1.682344 AAAAGGGCGGAGGGAATGC 60.682 57.895 0.00 0.00 0.00 3.56
4727 5202 1.322538 CCAAAAGGGCGGAGGGAATG 61.323 60.000 0.00 0.00 0.00 2.67
4728 5203 1.000359 CCAAAAGGGCGGAGGGAAT 60.000 57.895 0.00 0.00 0.00 3.01
4729 5204 2.438795 CCAAAAGGGCGGAGGGAA 59.561 61.111 0.00 0.00 0.00 3.97
4730 5205 2.856988 ACCAAAAGGGCGGAGGGA 60.857 61.111 0.00 0.00 42.05 4.20
4731 5206 2.499303 ATCACCAAAAGGGCGGAGGG 62.499 60.000 0.00 0.00 42.05 4.30
4732 5207 0.611896 AATCACCAAAAGGGCGGAGG 60.612 55.000 0.00 0.00 42.05 4.30
4733 5208 0.811281 GAATCACCAAAAGGGCGGAG 59.189 55.000 0.00 0.00 42.05 4.63
4734 5209 0.404040 AGAATCACCAAAAGGGCGGA 59.596 50.000 0.00 0.00 42.05 5.54
4735 5210 1.202348 GAAGAATCACCAAAAGGGCGG 59.798 52.381 0.00 0.00 42.05 6.13
4736 5211 1.135689 CGAAGAATCACCAAAAGGGCG 60.136 52.381 0.00 0.00 42.05 6.13
4737 5212 1.402852 GCGAAGAATCACCAAAAGGGC 60.403 52.381 0.00 0.00 42.05 5.19
4738 5213 1.202348 GGCGAAGAATCACCAAAAGGG 59.798 52.381 0.00 0.00 44.81 3.95
4739 5214 2.162681 AGGCGAAGAATCACCAAAAGG 58.837 47.619 0.00 0.00 29.65 3.11
4740 5215 3.253188 TCAAGGCGAAGAATCACCAAAAG 59.747 43.478 0.00 0.00 29.65 2.27
4741 5216 3.004315 GTCAAGGCGAAGAATCACCAAAA 59.996 43.478 0.00 0.00 29.65 2.44
4742 5217 2.552315 GTCAAGGCGAAGAATCACCAAA 59.448 45.455 0.00 0.00 29.65 3.28
4743 5218 2.151202 GTCAAGGCGAAGAATCACCAA 58.849 47.619 0.00 0.00 29.65 3.67
4744 5219 1.071542 TGTCAAGGCGAAGAATCACCA 59.928 47.619 0.00 0.00 29.65 4.17
4745 5220 1.808411 TGTCAAGGCGAAGAATCACC 58.192 50.000 0.00 0.00 0.00 4.02
4746 5221 3.751621 CAATGTCAAGGCGAAGAATCAC 58.248 45.455 0.00 0.00 0.00 3.06
4747 5222 2.162208 GCAATGTCAAGGCGAAGAATCA 59.838 45.455 0.00 0.00 0.00 2.57
4748 5223 2.478539 GGCAATGTCAAGGCGAAGAATC 60.479 50.000 0.00 0.00 0.00 2.52
4749 5224 1.474077 GGCAATGTCAAGGCGAAGAAT 59.526 47.619 0.00 0.00 0.00 2.40
4750 5225 0.881118 GGCAATGTCAAGGCGAAGAA 59.119 50.000 0.00 0.00 0.00 2.52
4751 5226 0.960364 GGGCAATGTCAAGGCGAAGA 60.960 55.000 0.00 0.00 0.00 2.87
4752 5227 1.243342 TGGGCAATGTCAAGGCGAAG 61.243 55.000 0.00 0.00 0.00 3.79
4753 5228 0.825425 TTGGGCAATGTCAAGGCGAA 60.825 50.000 0.00 0.00 0.00 4.70
4754 5229 1.228398 TTGGGCAATGTCAAGGCGA 60.228 52.632 0.00 0.00 0.00 5.54
4755 5230 1.213537 CTTGGGCAATGTCAAGGCG 59.786 57.895 9.43 0.00 37.35 5.52
4756 5231 0.529378 CTCTTGGGCAATGTCAAGGC 59.471 55.000 14.63 0.00 40.35 4.35
4757 5232 1.180029 CCTCTTGGGCAATGTCAAGG 58.820 55.000 14.63 8.29 40.35 3.61
4769 5244 0.252742 ACAGGACCCTACCCTCTTGG 60.253 60.000 0.00 0.00 41.37 3.61
4770 5245 1.196012 GACAGGACCCTACCCTCTTG 58.804 60.000 0.00 0.00 0.00 3.02
4771 5246 0.042881 GGACAGGACCCTACCCTCTT 59.957 60.000 0.00 0.00 0.00 2.85
4772 5247 1.704704 GGACAGGACCCTACCCTCT 59.295 63.158 0.00 0.00 0.00 3.69
4773 5248 1.757340 CGGACAGGACCCTACCCTC 60.757 68.421 0.00 0.00 0.00 4.30
4774 5249 1.591280 ATCGGACAGGACCCTACCCT 61.591 60.000 0.00 0.00 0.00 4.34
4775 5250 1.075450 ATCGGACAGGACCCTACCC 60.075 63.158 0.00 2.24 0.00 3.69
4776 5251 0.396695 TCATCGGACAGGACCCTACC 60.397 60.000 0.00 0.00 0.00 3.18
4777 5252 1.341531 CATCATCGGACAGGACCCTAC 59.658 57.143 0.00 0.00 0.00 3.18
4778 5253 1.216930 TCATCATCGGACAGGACCCTA 59.783 52.381 0.00 0.00 0.00 3.53
4779 5254 0.032117 TCATCATCGGACAGGACCCT 60.032 55.000 0.00 0.00 0.00 4.34
4780 5255 0.390860 CTCATCATCGGACAGGACCC 59.609 60.000 0.00 0.00 0.00 4.46
4781 5256 0.249657 GCTCATCATCGGACAGGACC 60.250 60.000 0.00 0.00 0.00 4.46
4782 5257 0.596083 CGCTCATCATCGGACAGGAC 60.596 60.000 0.00 0.00 0.00 3.85
4783 5258 1.037579 ACGCTCATCATCGGACAGGA 61.038 55.000 0.00 0.00 0.00 3.86
4784 5259 0.873312 CACGCTCATCATCGGACAGG 60.873 60.000 0.00 0.00 0.00 4.00
4785 5260 0.101219 TCACGCTCATCATCGGACAG 59.899 55.000 0.00 0.00 0.00 3.51
4786 5261 0.101219 CTCACGCTCATCATCGGACA 59.899 55.000 0.00 0.00 0.00 4.02
4787 5262 1.211818 GCTCACGCTCATCATCGGAC 61.212 60.000 0.00 0.00 0.00 4.79
4788 5263 1.066422 GCTCACGCTCATCATCGGA 59.934 57.895 0.00 0.00 0.00 4.55
4789 5264 0.312102 TAGCTCACGCTCATCATCGG 59.688 55.000 0.00 0.00 45.15 4.18
4790 5265 1.403493 GTAGCTCACGCTCATCATCG 58.597 55.000 0.00 0.00 45.15 3.84
4791 5266 1.403493 CGTAGCTCACGCTCATCATC 58.597 55.000 0.00 0.00 45.15 2.92
4792 5267 3.559015 CGTAGCTCACGCTCATCAT 57.441 52.632 0.00 0.00 45.15 2.45
4805 5280 1.068250 CTTGAGCCTAGCCCGTAGC 59.932 63.158 0.00 0.00 44.25 3.58
4806 5281 0.671251 CTCTTGAGCCTAGCCCGTAG 59.329 60.000 0.00 0.00 0.00 3.51
4807 5282 0.755698 CCTCTTGAGCCTAGCCCGTA 60.756 60.000 0.00 0.00 0.00 4.02
4808 5283 2.060980 CCTCTTGAGCCTAGCCCGT 61.061 63.158 0.00 0.00 0.00 5.28
4809 5284 2.818132 CCTCTTGAGCCTAGCCCG 59.182 66.667 0.00 0.00 0.00 6.13
4810 5285 2.508436 GCCTCTTGAGCCTAGCCC 59.492 66.667 0.00 0.00 0.00 5.19
4811 5286 2.107953 CGCCTCTTGAGCCTAGCC 59.892 66.667 0.00 0.00 0.00 3.93
4812 5287 2.107953 CCGCCTCTTGAGCCTAGC 59.892 66.667 0.00 0.00 0.00 3.42
4813 5288 2.022240 GACCCGCCTCTTGAGCCTAG 62.022 65.000 0.00 0.00 0.00 3.02
4814 5289 2.038975 ACCCGCCTCTTGAGCCTA 59.961 61.111 0.00 0.00 0.00 3.93
4815 5290 3.394836 GACCCGCCTCTTGAGCCT 61.395 66.667 0.00 0.00 0.00 4.58
4816 5291 2.543067 AATGACCCGCCTCTTGAGCC 62.543 60.000 0.00 0.00 0.00 4.70
4817 5292 1.078143 AATGACCCGCCTCTTGAGC 60.078 57.895 0.00 0.00 0.00 4.26
4818 5293 1.372087 GCAATGACCCGCCTCTTGAG 61.372 60.000 0.00 0.00 0.00 3.02
4819 5294 1.377202 GCAATGACCCGCCTCTTGA 60.377 57.895 0.00 0.00 0.00 3.02
4820 5295 2.409870 GGCAATGACCCGCCTCTTG 61.410 63.158 0.00 0.00 45.29 3.02
4821 5296 2.044946 GGCAATGACCCGCCTCTT 60.045 61.111 0.00 0.00 45.29 2.85
4826 5301 1.675641 AGACAAGGCAATGACCCGC 60.676 57.895 0.00 0.00 0.00 6.13
4827 5302 0.606401 ACAGACAAGGCAATGACCCG 60.606 55.000 0.00 0.00 0.00 5.28
4828 5303 0.883833 CACAGACAAGGCAATGACCC 59.116 55.000 0.00 0.00 0.00 4.46
4829 5304 0.242017 GCACAGACAAGGCAATGACC 59.758 55.000 0.00 0.00 0.00 4.02
4830 5305 1.242076 AGCACAGACAAGGCAATGAC 58.758 50.000 0.00 0.00 0.00 3.06
4831 5306 1.610038 CAAGCACAGACAAGGCAATGA 59.390 47.619 0.00 0.00 0.00 2.57
4832 5307 1.610038 TCAAGCACAGACAAGGCAATG 59.390 47.619 0.00 0.00 0.00 2.82
4833 5308 1.985473 TCAAGCACAGACAAGGCAAT 58.015 45.000 0.00 0.00 0.00 3.56
4834 5309 1.761449 TTCAAGCACAGACAAGGCAA 58.239 45.000 0.00 0.00 0.00 4.52
4835 5310 1.677576 CTTTCAAGCACAGACAAGGCA 59.322 47.619 0.00 0.00 0.00 4.75
4836 5311 1.000938 CCTTTCAAGCACAGACAAGGC 60.001 52.381 0.00 0.00 0.00 4.35
4837 5312 2.291741 GACCTTTCAAGCACAGACAAGG 59.708 50.000 0.00 0.00 37.42 3.61
4838 5313 3.209410 AGACCTTTCAAGCACAGACAAG 58.791 45.455 0.00 0.00 0.00 3.16
4839 5314 3.206150 GAGACCTTTCAAGCACAGACAA 58.794 45.455 0.00 0.00 0.00 3.18
4840 5315 2.803133 CGAGACCTTTCAAGCACAGACA 60.803 50.000 0.00 0.00 0.00 3.41
4841 5316 1.795286 CGAGACCTTTCAAGCACAGAC 59.205 52.381 0.00 0.00 0.00 3.51
4842 5317 1.412710 ACGAGACCTTTCAAGCACAGA 59.587 47.619 0.00 0.00 0.00 3.41
4843 5318 1.871080 ACGAGACCTTTCAAGCACAG 58.129 50.000 0.00 0.00 0.00 3.66
4844 5319 3.069016 TCTTACGAGACCTTTCAAGCACA 59.931 43.478 0.00 0.00 0.00 4.57
4845 5320 3.650139 TCTTACGAGACCTTTCAAGCAC 58.350 45.455 0.00 0.00 0.00 4.40
4846 5321 4.307432 CTTCTTACGAGACCTTTCAAGCA 58.693 43.478 0.00 0.00 0.00 3.91
4847 5322 3.123790 GCTTCTTACGAGACCTTTCAAGC 59.876 47.826 0.00 0.00 0.00 4.01
4848 5323 4.307432 TGCTTCTTACGAGACCTTTCAAG 58.693 43.478 0.00 0.00 0.00 3.02
4849 5324 4.330944 TGCTTCTTACGAGACCTTTCAA 57.669 40.909 0.00 0.00 0.00 2.69
4850 5325 4.330944 TTGCTTCTTACGAGACCTTTCA 57.669 40.909 0.00 0.00 0.00 2.69
4851 5326 4.436183 GCATTGCTTCTTACGAGACCTTTC 60.436 45.833 0.16 0.00 0.00 2.62
4852 5327 3.437049 GCATTGCTTCTTACGAGACCTTT 59.563 43.478 0.16 0.00 0.00 3.11
4853 5328 3.003480 GCATTGCTTCTTACGAGACCTT 58.997 45.455 0.16 0.00 0.00 3.50
4854 5329 2.622436 GCATTGCTTCTTACGAGACCT 58.378 47.619 0.16 0.00 0.00 3.85
4855 5330 1.324736 CGCATTGCTTCTTACGAGACC 59.675 52.381 7.12 0.00 0.00 3.85
4856 5331 1.267087 GCGCATTGCTTCTTACGAGAC 60.267 52.381 0.30 0.00 41.73 3.36
4857 5332 0.999406 GCGCATTGCTTCTTACGAGA 59.001 50.000 0.30 0.00 41.73 4.04
4858 5333 0.026803 GGCGCATTGCTTCTTACGAG 59.973 55.000 10.83 0.00 45.43 4.18
4859 5334 0.672091 TGGCGCATTGCTTCTTACGA 60.672 50.000 10.83 0.00 45.43 3.43
4860 5335 0.247814 CTGGCGCATTGCTTCTTACG 60.248 55.000 10.83 0.00 45.43 3.18
4861 5336 1.086696 TCTGGCGCATTGCTTCTTAC 58.913 50.000 10.83 0.00 45.43 2.34
4862 5337 1.819928 TTCTGGCGCATTGCTTCTTA 58.180 45.000 10.83 0.00 45.43 2.10
4863 5338 1.133790 GATTCTGGCGCATTGCTTCTT 59.866 47.619 10.83 0.00 45.43 2.52
4864 5339 0.737219 GATTCTGGCGCATTGCTTCT 59.263 50.000 10.83 0.00 45.43 2.85
4865 5340 0.737219 AGATTCTGGCGCATTGCTTC 59.263 50.000 10.83 0.00 45.43 3.86
4866 5341 2.877975 AGATTCTGGCGCATTGCTT 58.122 47.368 10.83 0.00 45.43 3.91
4867 5342 4.651867 AGATTCTGGCGCATTGCT 57.348 50.000 10.83 0.00 45.43 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.