Multiple sequence alignment - TraesCS5A01G012700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G012700 chr5A 100.000 2450 0 0 1 2450 8504116 8506565 0.000000e+00 4525
1 TraesCS5A01G012700 chr5A 90.741 162 12 2 2288 2449 601344263 601344105 1.910000e-51 213
2 TraesCS5A01G012700 chr5A 85.714 126 18 0 2146 2271 514065850 514065725 1.530000e-27 134
3 TraesCS5A01G012700 chr5D 94.198 1172 51 6 744 1908 10624031 10625192 0.000000e+00 1772
4 TraesCS5A01G012700 chr5D 86.466 532 72 0 205 736 482814658 482814127 3.510000e-163 584
5 TraesCS5A01G012700 chr5D 89.508 305 30 2 2146 2449 10625191 10625494 3.820000e-103 385
6 TraesCS5A01G012700 chr5D 91.358 162 12 1 2288 2449 421831461 421831302 1.140000e-53 220
7 TraesCS5A01G012700 chr5D 88.281 128 13 2 2146 2272 185365016 185365142 4.220000e-33 152
8 TraesCS5A01G012700 chr5B 90.625 704 44 10 744 1441 11042725 11043412 0.000000e+00 915
9 TraesCS5A01G012700 chr5B 89.313 262 17 6 1444 1698 11043453 11043710 3.930000e-83 318
10 TraesCS5A01G012700 chr5B 86.260 131 13 5 2146 2272 652872190 652872319 1.180000e-28 137
11 TraesCS5A01G012700 chr1D 87.358 530 64 3 207 736 173047698 173048224 2.690000e-169 604
12 TraesCS5A01G012700 chr6D 85.929 533 73 2 205 736 296684980 296684449 3.540000e-158 568
13 TraesCS5A01G012700 chr2A 85.714 532 75 1 205 736 619838972 619838442 5.920000e-156 560
14 TraesCS5A01G012700 chr2A 97.189 249 7 0 1907 2155 84977769 84977521 2.910000e-114 422
15 TraesCS5A01G012700 chr2A 97.131 244 7 0 1904 2147 753083160 753083403 1.750000e-111 412
16 TraesCS5A01G012700 chr2A 88.189 127 15 0 2146 2272 136620214 136620088 4.220000e-33 152
17 TraesCS5A01G012700 chr2A 85.039 127 19 0 2146 2272 771824474 771824348 1.980000e-26 130
18 TraesCS5A01G012700 chr2A 85.039 127 19 0 2146 2272 771839332 771839206 1.980000e-26 130
19 TraesCS5A01G012700 chr2D 85.687 531 75 1 205 735 314367007 314366478 2.130000e-155 558
20 TraesCS5A01G012700 chr2D 84.991 533 79 1 205 736 560588563 560588031 7.710000e-150 540
21 TraesCS5A01G012700 chr2D 90.123 162 13 2 2288 2449 257497615 257497457 8.880000e-50 207
22 TraesCS5A01G012700 chr6B 85.047 535 79 1 202 736 633543835 633544368 5.960000e-151 544
23 TraesCS5A01G012700 chr6B 96.032 252 9 1 1907 2157 21064543 21064794 2.270000e-110 409
24 TraesCS5A01G012700 chr3A 84.515 536 81 2 202 736 312002573 312003107 1.670000e-146 529
25 TraesCS5A01G012700 chr1B 84.586 532 81 1 205 736 14855052 14854522 6.000000e-146 527
26 TraesCS5A01G012700 chr1B 91.358 162 12 1 2288 2449 396137729 396137888 1.140000e-53 220
27 TraesCS5A01G012700 chr1B 90.741 162 13 1 2288 2449 488542184 488542025 5.310000e-52 215
28 TraesCS5A01G012700 chr7A 97.107 242 7 0 1906 2147 515976621 515976862 2.270000e-110 409
29 TraesCS5A01G012700 chr7A 90.625 160 13 1 2290 2449 46691563 46691720 6.860000e-51 211
30 TraesCS5A01G012700 chr6A 96.341 246 9 0 1902 2147 111203018 111203263 2.930000e-109 405
31 TraesCS5A01G012700 chr6A 95.968 248 10 0 1904 2151 408339078 408339325 1.060000e-108 403
32 TraesCS5A01G012700 chr6A 93.585 265 15 2 1890 2154 98181343 98181081 6.350000e-106 394
33 TraesCS5A01G012700 chr6A 90.741 162 13 1 2288 2449 458239333 458239174 5.310000e-52 215
34 TraesCS5A01G012700 chr3B 96.356 247 8 1 1907 2153 12174775 12175020 2.930000e-109 405
35 TraesCS5A01G012700 chr3B 94.253 261 12 1 1907 2167 661163691 661163948 1.770000e-106 396
36 TraesCS5A01G012700 chr4D 90.123 162 14 1 2288 2449 223569063 223569222 2.470000e-50 209
37 TraesCS5A01G012700 chr4D 86.614 127 17 0 2146 2272 203024837 203024711 9.130000e-30 141
38 TraesCS5A01G012700 chr3D 85.938 128 15 3 2146 2272 251394948 251394823 1.530000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G012700 chr5A 8504116 8506565 2449 False 4525.0 4525 100.000 1 2450 1 chr5A.!!$F1 2449
1 TraesCS5A01G012700 chr5D 10624031 10625494 1463 False 1078.5 1772 91.853 744 2449 2 chr5D.!!$F2 1705
2 TraesCS5A01G012700 chr5D 482814127 482814658 531 True 584.0 584 86.466 205 736 1 chr5D.!!$R2 531
3 TraesCS5A01G012700 chr5B 11042725 11043710 985 False 616.5 915 89.969 744 1698 2 chr5B.!!$F2 954
4 TraesCS5A01G012700 chr1D 173047698 173048224 526 False 604.0 604 87.358 207 736 1 chr1D.!!$F1 529
5 TraesCS5A01G012700 chr6D 296684449 296684980 531 True 568.0 568 85.929 205 736 1 chr6D.!!$R1 531
6 TraesCS5A01G012700 chr2A 619838442 619838972 530 True 560.0 560 85.714 205 736 1 chr2A.!!$R3 531
7 TraesCS5A01G012700 chr2D 314366478 314367007 529 True 558.0 558 85.687 205 735 1 chr2D.!!$R2 530
8 TraesCS5A01G012700 chr2D 560588031 560588563 532 True 540.0 540 84.991 205 736 1 chr2D.!!$R3 531
9 TraesCS5A01G012700 chr6B 633543835 633544368 533 False 544.0 544 85.047 202 736 1 chr6B.!!$F2 534
10 TraesCS5A01G012700 chr3A 312002573 312003107 534 False 529.0 529 84.515 202 736 1 chr3A.!!$F1 534
11 TraesCS5A01G012700 chr1B 14854522 14855052 530 True 527.0 527 84.586 205 736 1 chr1B.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 960 0.179097 GCCAACCCGCAAAACAGAAA 60.179 50.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2423 2480 0.036388 ATCGACCAAGTCAACGGCAT 60.036 50.0 0.0 0.0 32.09 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.037715 GATGGGGGAGGAGGAGGA 58.962 66.667 0.00 0.00 0.00 3.71
18 19 1.460497 GATGGGGGAGGAGGAGGAC 60.460 68.421 0.00 0.00 0.00 3.85
19 20 2.974435 GATGGGGGAGGAGGAGGACC 62.974 70.000 0.00 0.00 0.00 4.46
20 21 4.862823 GGGGGAGGAGGAGGACCG 62.863 77.778 0.00 0.00 41.83 4.79
21 22 3.752167 GGGGAGGAGGAGGACCGA 61.752 72.222 0.00 0.00 41.83 4.69
22 23 2.123640 GGGAGGAGGAGGACCGAG 60.124 72.222 0.00 0.00 41.83 4.63
23 24 2.691779 GGGAGGAGGAGGACCGAGA 61.692 68.421 0.00 0.00 41.83 4.04
24 25 1.454295 GGAGGAGGAGGACCGAGAC 60.454 68.421 0.00 0.00 41.83 3.36
25 26 1.303615 GAGGAGGAGGACCGAGACA 59.696 63.158 0.00 0.00 41.83 3.41
26 27 0.323542 GAGGAGGAGGACCGAGACAA 60.324 60.000 0.00 0.00 41.83 3.18
27 28 0.323908 AGGAGGAGGACCGAGACAAG 60.324 60.000 0.00 0.00 41.83 3.16
28 29 1.324005 GGAGGAGGACCGAGACAAGG 61.324 65.000 0.00 0.00 41.83 3.61
29 30 1.305381 AGGAGGACCGAGACAAGGG 60.305 63.158 0.00 0.00 41.83 3.95
30 31 2.359967 GGAGGACCGAGACAAGGGG 61.360 68.421 0.00 0.00 0.00 4.79
31 32 1.305046 GAGGACCGAGACAAGGGGA 60.305 63.158 0.00 0.00 0.00 4.81
32 33 1.305381 AGGACCGAGACAAGGGGAG 60.305 63.158 0.00 0.00 0.00 4.30
33 34 2.359967 GGACCGAGACAAGGGGAGG 61.360 68.421 0.00 0.00 0.00 4.30
34 35 2.284699 ACCGAGACAAGGGGAGGG 60.285 66.667 0.00 0.00 0.00 4.30
35 36 3.787001 CCGAGACAAGGGGAGGGC 61.787 72.222 0.00 0.00 0.00 5.19
36 37 3.003173 CGAGACAAGGGGAGGGCA 61.003 66.667 0.00 0.00 0.00 5.36
37 38 2.993853 GAGACAAGGGGAGGGCAG 59.006 66.667 0.00 0.00 0.00 4.85
38 39 2.612115 AGACAAGGGGAGGGCAGG 60.612 66.667 0.00 0.00 0.00 4.85
39 40 3.732849 GACAAGGGGAGGGCAGGG 61.733 72.222 0.00 0.00 0.00 4.45
90 91 4.505970 CAGGGGGAGGGAGAGGGG 62.506 77.778 0.00 0.00 0.00 4.79
93 94 3.462501 GGGGAGGGAGAGGGGGAT 61.463 72.222 0.00 0.00 0.00 3.85
94 95 2.122189 GGGAGGGAGAGGGGGATG 60.122 72.222 0.00 0.00 0.00 3.51
95 96 2.122189 GGAGGGAGAGGGGGATGG 60.122 72.222 0.00 0.00 0.00 3.51
96 97 2.122189 GAGGGAGAGGGGGATGGG 60.122 72.222 0.00 0.00 0.00 4.00
97 98 4.523282 AGGGAGAGGGGGATGGGC 62.523 72.222 0.00 0.00 0.00 5.36
98 99 4.843331 GGGAGAGGGGGATGGGCA 62.843 72.222 0.00 0.00 0.00 5.36
99 100 3.174265 GGAGAGGGGGATGGGCAG 61.174 72.222 0.00 0.00 0.00 4.85
100 101 2.040464 GAGAGGGGGATGGGCAGA 60.040 66.667 0.00 0.00 0.00 4.26
101 102 2.040043 AGAGGGGGATGGGCAGAG 60.040 66.667 0.00 0.00 0.00 3.35
102 103 3.174265 GAGGGGGATGGGCAGAGG 61.174 72.222 0.00 0.00 0.00 3.69
103 104 3.710631 AGGGGGATGGGCAGAGGA 61.711 66.667 0.00 0.00 0.00 3.71
104 105 2.696125 GGGGGATGGGCAGAGGAA 60.696 66.667 0.00 0.00 0.00 3.36
105 106 2.761465 GGGGGATGGGCAGAGGAAG 61.761 68.421 0.00 0.00 0.00 3.46
106 107 2.761465 GGGGATGGGCAGAGGAAGG 61.761 68.421 0.00 0.00 0.00 3.46
107 108 2.761465 GGGATGGGCAGAGGAAGGG 61.761 68.421 0.00 0.00 0.00 3.95
108 109 2.761465 GGATGGGCAGAGGAAGGGG 61.761 68.421 0.00 0.00 0.00 4.79
109 110 1.694169 GATGGGCAGAGGAAGGGGA 60.694 63.158 0.00 0.00 0.00 4.81
110 111 1.988982 GATGGGCAGAGGAAGGGGAC 61.989 65.000 0.00 0.00 0.00 4.46
233 234 7.979537 GCAATAAAATTCCCTTTATCGTTCCTT 59.020 33.333 0.00 0.00 31.66 3.36
252 253 0.325860 TAGGACTGCCCCAACCGTAT 60.326 55.000 0.00 0.00 34.66 3.06
259 260 3.244981 ACTGCCCCAACCGTATCTTTAAA 60.245 43.478 0.00 0.00 0.00 1.52
334 335 3.294214 GACGAGTCCATCTACCCCTTTA 58.706 50.000 0.00 0.00 0.00 1.85
403 404 4.229582 AGCTTGTATCCCCATTGAAACCTA 59.770 41.667 0.00 0.00 0.00 3.08
448 449 6.425577 TTTGTGCACTAGTTTACGTCTTTT 57.574 33.333 19.41 0.00 0.00 2.27
469 470 1.199097 CCACCACAAATACCAAGACGC 59.801 52.381 0.00 0.00 0.00 5.19
473 474 4.155099 CACCACAAATACCAAGACGCAATA 59.845 41.667 0.00 0.00 0.00 1.90
484 485 4.036027 CCAAGACGCAATAGCAATCATCTT 59.964 41.667 0.00 0.00 42.27 2.40
494 495 8.025445 GCAATAGCAATCATCTTCCGAATATTT 58.975 33.333 0.00 0.00 41.58 1.40
553 555 6.407475 GTGCAACAAAAATTTGAGAACTGT 57.593 33.333 12.54 0.00 40.55 3.55
620 622 1.439543 AACCAAGCCTTCTCCAGACT 58.560 50.000 0.00 0.00 0.00 3.24
634 636 4.017407 TCTCCAGACTTCCTTAGCCTTCTA 60.017 45.833 0.00 0.00 0.00 2.10
635 637 4.684724 TCCAGACTTCCTTAGCCTTCTAA 58.315 43.478 0.00 0.00 33.95 2.10
717 719 8.006298 AGGTGAAACTTTCATGTGTTTATTGA 57.994 30.769 7.47 0.00 42.47 2.57
732 734 2.273370 ATTGACGAGCGTAACACGAT 57.727 45.000 2.35 0.00 45.73 3.73
736 738 2.096335 TGACGAGCGTAACACGATATGT 59.904 45.455 2.35 0.00 41.80 2.29
781 783 0.895530 TGTTTCTCCCTAGCCACTCG 59.104 55.000 0.00 0.00 0.00 4.18
833 835 3.378427 GGTTTAGGACATCCATTGCAGTC 59.622 47.826 0.00 0.00 38.89 3.51
851 856 4.556233 CAGTCTGAATGGTTGTCTCGTAA 58.444 43.478 0.00 0.00 0.00 3.18
888 893 0.612732 CAGTGGCCACCAATCCATGT 60.613 55.000 32.29 7.53 34.18 3.21
952 957 2.354539 CGCCAACCCGCAAAACAG 60.355 61.111 0.00 0.00 0.00 3.16
955 960 0.179097 GCCAACCCGCAAAACAGAAA 60.179 50.000 0.00 0.00 0.00 2.52
1122 1130 2.586792 GCGGTGAGCCTGGAGATT 59.413 61.111 0.00 0.00 40.81 2.40
1153 1161 2.612493 ATGAACCAGAACCCCGGGG 61.612 63.158 39.18 39.18 42.03 5.73
1209 1217 1.519246 CGATCTGCTCTCAAGGCCA 59.481 57.895 5.01 0.00 0.00 5.36
1214 1222 2.164865 CTGCTCTCAAGGCCAGACGT 62.165 60.000 5.01 0.00 0.00 4.34
1270 1278 2.203337 TTGTGCCAGAGGTGGTGC 60.203 61.111 0.00 0.00 46.96 5.01
1317 1328 3.900892 CTCGGCGGTGGCTCGTAT 61.901 66.667 7.21 0.00 39.81 3.06
1330 1341 0.678395 CTCGTATGCAGAGGAGCCAT 59.322 55.000 17.12 0.00 32.38 4.40
1665 1720 0.314935 TAAGAACCGGCGAACGTTCT 59.685 50.000 24.80 19.66 41.37 3.01
1698 1753 6.070824 TGCTACAGATCAGAACACCTCAATAA 60.071 38.462 0.00 0.00 0.00 1.40
1699 1754 6.989169 GCTACAGATCAGAACACCTCAATAAT 59.011 38.462 0.00 0.00 0.00 1.28
1700 1755 7.497249 GCTACAGATCAGAACACCTCAATAATT 59.503 37.037 0.00 0.00 0.00 1.40
1701 1756 7.621428 ACAGATCAGAACACCTCAATAATTG 57.379 36.000 0.00 0.00 0.00 2.32
1702 1757 7.170965 ACAGATCAGAACACCTCAATAATTGT 58.829 34.615 0.00 0.00 0.00 2.71
1703 1758 7.667219 ACAGATCAGAACACCTCAATAATTGTT 59.333 33.333 0.00 0.00 34.88 2.83
1704 1759 8.180267 CAGATCAGAACACCTCAATAATTGTTC 58.820 37.037 5.38 5.38 45.42 3.18
1748 1803 6.560253 TTCTTTCCTAACTAAGCTTGCTTG 57.440 37.500 17.04 9.85 0.00 4.01
1800 1855 3.040147 TCATGGACCGAGAGAAACAAC 57.960 47.619 0.00 0.00 0.00 3.32
1832 1887 1.269102 GGACTCGATACACCACGATGG 60.269 57.143 0.00 0.00 45.02 3.51
1907 1963 4.819761 CTGCGGCGGCTGCTCTTA 62.820 66.667 31.57 12.91 42.25 2.10
1909 1965 4.821589 GCGGCGGCTGCTCTTACT 62.822 66.667 25.88 0.00 42.25 2.24
1910 1966 2.125512 CGGCGGCTGCTCTTACTT 60.126 61.111 18.85 0.00 42.25 2.24
1911 1967 2.167861 CGGCGGCTGCTCTTACTTC 61.168 63.158 18.85 0.00 42.25 3.01
1912 1968 1.815840 GGCGGCTGCTCTTACTTCC 60.816 63.158 18.85 0.00 42.25 3.46
1913 1969 1.219393 GCGGCTGCTCTTACTTCCT 59.781 57.895 11.21 0.00 38.39 3.36
1914 1970 0.808060 GCGGCTGCTCTTACTTCCTC 60.808 60.000 11.21 0.00 38.39 3.71
1915 1971 0.179097 CGGCTGCTCTTACTTCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
1916 1972 0.905357 GGCTGCTCTTACTTCCTCCA 59.095 55.000 0.00 0.00 0.00 3.86
1917 1973 1.488393 GGCTGCTCTTACTTCCTCCAT 59.512 52.381 0.00 0.00 0.00 3.41
1918 1974 2.092699 GGCTGCTCTTACTTCCTCCATT 60.093 50.000 0.00 0.00 0.00 3.16
1919 1975 3.202097 GCTGCTCTTACTTCCTCCATTC 58.798 50.000 0.00 0.00 0.00 2.67
1920 1976 3.802866 CTGCTCTTACTTCCTCCATTCC 58.197 50.000 0.00 0.00 0.00 3.01
1921 1977 3.181329 TGCTCTTACTTCCTCCATTCCA 58.819 45.455 0.00 0.00 0.00 3.53
1922 1978 3.587061 TGCTCTTACTTCCTCCATTCCAA 59.413 43.478 0.00 0.00 0.00 3.53
1923 1979 4.042809 TGCTCTTACTTCCTCCATTCCAAA 59.957 41.667 0.00 0.00 0.00 3.28
1924 1980 5.010282 GCTCTTACTTCCTCCATTCCAAAA 58.990 41.667 0.00 0.00 0.00 2.44
1925 1981 5.654209 GCTCTTACTTCCTCCATTCCAAAAT 59.346 40.000 0.00 0.00 0.00 1.82
1926 1982 6.828785 GCTCTTACTTCCTCCATTCCAAAATA 59.171 38.462 0.00 0.00 0.00 1.40
1927 1983 7.503902 GCTCTTACTTCCTCCATTCCAAAATAT 59.496 37.037 0.00 0.00 0.00 1.28
1930 1986 9.853177 CTTACTTCCTCCATTCCAAAATATAGT 57.147 33.333 0.00 0.00 0.00 2.12
1931 1987 9.627123 TTACTTCCTCCATTCCAAAATATAGTG 57.373 33.333 0.00 0.00 0.00 2.74
1932 1988 6.547510 ACTTCCTCCATTCCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
1933 1989 5.063204 TCCTCCATTCCAAAATATAGTGCG 58.937 41.667 0.00 0.00 0.00 5.34
1934 1990 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
1935 1991 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
1936 1992 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
1937 1993 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
1938 1994 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
1939 1995 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
1953 2009 2.736995 CGCGCTTTCCGAGGTTCA 60.737 61.111 5.56 0.00 40.02 3.18
1954 2010 2.314647 CGCGCTTTCCGAGGTTCAA 61.315 57.895 5.56 0.00 40.02 2.69
1955 2011 1.206831 GCGCTTTCCGAGGTTCAAC 59.793 57.895 0.00 0.00 40.02 3.18
1956 2012 1.228657 GCGCTTTCCGAGGTTCAACT 61.229 55.000 0.00 0.00 40.02 3.16
1957 2013 1.226746 CGCTTTCCGAGGTTCAACTT 58.773 50.000 0.00 0.00 40.02 2.66
1958 2014 1.602377 CGCTTTCCGAGGTTCAACTTT 59.398 47.619 0.00 0.00 40.02 2.66
1959 2015 2.602217 CGCTTTCCGAGGTTCAACTTTG 60.602 50.000 0.00 0.00 40.02 2.77
1960 2016 2.616842 GCTTTCCGAGGTTCAACTTTGA 59.383 45.455 0.00 0.00 34.92 2.69
1961 2017 3.548214 GCTTTCCGAGGTTCAACTTTGAC 60.548 47.826 0.00 0.00 36.83 3.18
1962 2018 2.249844 TCCGAGGTTCAACTTTGACC 57.750 50.000 0.00 0.00 36.83 4.02
1963 2019 1.487142 TCCGAGGTTCAACTTTGACCA 59.513 47.619 11.01 0.00 36.83 4.02
1964 2020 2.105821 TCCGAGGTTCAACTTTGACCAT 59.894 45.455 11.01 0.00 36.83 3.55
1965 2021 3.325425 TCCGAGGTTCAACTTTGACCATA 59.675 43.478 11.01 0.00 36.83 2.74
1966 2022 4.069304 CCGAGGTTCAACTTTGACCATAA 58.931 43.478 11.01 0.00 36.83 1.90
1967 2023 4.517453 CCGAGGTTCAACTTTGACCATAAA 59.483 41.667 11.01 0.00 36.83 1.40
1968 2024 5.183140 CCGAGGTTCAACTTTGACCATAAAT 59.817 40.000 11.01 0.00 36.83 1.40
1969 2025 6.294508 CCGAGGTTCAACTTTGACCATAAATT 60.295 38.462 11.01 0.00 36.83 1.82
1970 2026 7.145323 CGAGGTTCAACTTTGACCATAAATTT 58.855 34.615 0.00 0.00 36.83 1.82
1971 2027 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
1972 2028 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
1973 2029 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
1974 2030 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
1975 2031 9.535878 GTTCAACTTTGACCATAAATTTAACCA 57.464 29.630 1.21 0.00 36.83 3.67
1977 2033 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
1978 2034 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
1979 2035 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
1980 2036 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
1981 2037 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
1982 2038 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
1983 2039 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
1984 2040 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
1985 2041 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
1986 2042 6.804783 CCATAAATTTAACCAACGAGACCAAC 59.195 38.462 1.21 0.00 0.00 3.77
1987 2043 7.308951 CCATAAATTTAACCAACGAGACCAACT 60.309 37.037 1.21 0.00 0.00 3.16
1988 2044 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
1989 2045 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
1990 2046 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
1991 2047 2.317609 CCAACGAGACCAACTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
1992 2048 1.594293 CAACGAGACCAACTGCGGT 60.594 57.895 0.00 0.00 43.91 5.68
1993 2049 1.594293 AACGAGACCAACTGCGGTG 60.594 57.895 0.00 0.00 40.22 4.94
1994 2050 2.738521 CGAGACCAACTGCGGTGG 60.739 66.667 10.52 10.52 40.22 4.61
1995 2051 2.358737 GAGACCAACTGCGGTGGG 60.359 66.667 18.33 18.33 40.22 4.61
1996 2052 2.847234 AGACCAACTGCGGTGGGA 60.847 61.111 26.78 0.00 40.22 4.37
1997 2053 2.358737 GACCAACTGCGGTGGGAG 60.359 66.667 26.78 4.53 40.22 4.30
1998 2054 2.847234 ACCAACTGCGGTGGGAGA 60.847 61.111 26.78 0.00 38.85 3.71
1999 2055 2.391724 GACCAACTGCGGTGGGAGAA 62.392 60.000 26.78 0.00 40.22 2.87
2000 2056 1.228124 CCAACTGCGGTGGGAGAAA 60.228 57.895 14.70 0.00 38.85 2.52
2001 2057 0.821711 CCAACTGCGGTGGGAGAAAA 60.822 55.000 14.70 0.00 38.85 2.29
2002 2058 1.028905 CAACTGCGGTGGGAGAAAAA 58.971 50.000 0.00 0.00 35.29 1.94
2057 2113 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
2058 2114 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
2059 2115 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
2060 2116 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
2061 2117 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
2062 2118 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
2063 2119 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
2064 2120 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
2065 2121 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
2066 2122 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
2067 2123 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
2068 2124 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
2084 2140 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
2085 2141 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
2086 2142 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
2087 2143 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
2088 2144 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
2089 2145 9.434559 GCAATCGGTCTTGATAGTTAAATTTAC 57.565 33.333 0.00 0.00 0.00 2.01
2090 2146 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
2091 2147 7.760131 TCGGTCTTGATAGTTAAATTTACGG 57.240 36.000 0.00 0.00 0.00 4.02
2092 2148 7.322664 TCGGTCTTGATAGTTAAATTTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
2093 2149 7.489113 TCGGTCTTGATAGTTAAATTTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
2094 2150 7.276218 CGGTCTTGATAGTTAAATTTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
2095 2151 8.938906 GGTCTTGATAGTTAAATTTACGGTCAA 58.061 33.333 0.00 6.02 0.00 3.18
2104 2160 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
2105 2161 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
2106 2162 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
2107 2163 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
2108 2164 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
2109 2165 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
2110 2166 0.310854 GTCAAAGTTGAAGCACGGGG 59.689 55.000 0.00 0.00 39.21 5.73
2111 2167 0.181587 TCAAAGTTGAAGCACGGGGA 59.818 50.000 0.00 0.00 33.55 4.81
2112 2168 1.202879 TCAAAGTTGAAGCACGGGGAT 60.203 47.619 0.00 0.00 33.55 3.85
2113 2169 2.039216 TCAAAGTTGAAGCACGGGGATA 59.961 45.455 0.00 0.00 33.55 2.59
2114 2170 2.403252 AAGTTGAAGCACGGGGATAG 57.597 50.000 0.00 0.00 0.00 2.08
2115 2171 1.568504 AGTTGAAGCACGGGGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
2116 2172 1.482593 AGTTGAAGCACGGGGATAGAG 59.517 52.381 0.00 0.00 0.00 2.43
2117 2173 1.480954 GTTGAAGCACGGGGATAGAGA 59.519 52.381 0.00 0.00 0.00 3.10
2118 2174 1.860641 TGAAGCACGGGGATAGAGAA 58.139 50.000 0.00 0.00 0.00 2.87
2119 2175 2.184533 TGAAGCACGGGGATAGAGAAA 58.815 47.619 0.00 0.00 0.00 2.52
2120 2176 2.168521 TGAAGCACGGGGATAGAGAAAG 59.831 50.000 0.00 0.00 0.00 2.62
2121 2177 0.466124 AGCACGGGGATAGAGAAAGC 59.534 55.000 0.00 0.00 0.00 3.51
2122 2178 0.178068 GCACGGGGATAGAGAAAGCA 59.822 55.000 0.00 0.00 0.00 3.91
2123 2179 1.941325 CACGGGGATAGAGAAAGCAC 58.059 55.000 0.00 0.00 0.00 4.40
2124 2180 1.482593 CACGGGGATAGAGAAAGCACT 59.517 52.381 0.00 0.00 0.00 4.40
2125 2181 2.693591 CACGGGGATAGAGAAAGCACTA 59.306 50.000 0.00 0.00 0.00 2.74
2126 2182 2.694109 ACGGGGATAGAGAAAGCACTAC 59.306 50.000 0.00 0.00 0.00 2.73
2127 2183 2.693591 CGGGGATAGAGAAAGCACTACA 59.306 50.000 0.00 0.00 0.00 2.74
2128 2184 3.322254 CGGGGATAGAGAAAGCACTACAT 59.678 47.826 0.00 0.00 0.00 2.29
2129 2185 4.202264 CGGGGATAGAGAAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
2130 2186 5.059833 GGGGATAGAGAAAGCACTACATTG 58.940 45.833 0.00 0.00 0.00 2.82
2131 2187 5.396884 GGGGATAGAGAAAGCACTACATTGT 60.397 44.000 0.00 0.00 0.00 2.71
2132 2188 5.525378 GGGATAGAGAAAGCACTACATTGTG 59.475 44.000 0.00 0.00 40.62 3.33
2133 2189 5.525378 GGATAGAGAAAGCACTACATTGTGG 59.475 44.000 0.00 0.00 38.31 4.17
2134 2190 4.623932 AGAGAAAGCACTACATTGTGGA 57.376 40.909 7.20 0.00 38.31 4.02
2135 2191 4.973168 AGAGAAAGCACTACATTGTGGAA 58.027 39.130 7.20 0.00 38.31 3.53
2136 2192 5.564550 AGAGAAAGCACTACATTGTGGAAT 58.435 37.500 7.20 0.00 38.31 3.01
2137 2193 5.413833 AGAGAAAGCACTACATTGTGGAATG 59.586 40.000 7.20 0.00 44.11 2.67
2138 2194 4.460382 AGAAAGCACTACATTGTGGAATGG 59.540 41.667 7.20 0.00 43.00 3.16
2139 2195 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
2143 2199 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
2144 2200 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
2161 2217 5.484290 GGAGGGAGTAATAAATAGCTAGCCA 59.516 44.000 12.13 0.00 0.00 4.75
2191 2247 4.585581 GGGCTTAGACTTGGGTTTTGTTTA 59.414 41.667 0.00 0.00 0.00 2.01
2192 2248 5.508489 GGGCTTAGACTTGGGTTTTGTTTAC 60.508 44.000 0.00 0.00 0.00 2.01
2237 2294 3.570926 ATTTGTCTTCACTCGTAGCGA 57.429 42.857 0.00 0.00 0.00 4.93
2253 2310 1.226046 CGACTAGTGCGACCGTCAG 60.226 63.158 0.00 0.00 0.00 3.51
2259 2316 1.374252 GTGCGACCGTCAGGACATT 60.374 57.895 0.00 0.00 41.02 2.71
2269 2326 4.935808 ACCGTCAGGACATTCTATCAAAAC 59.064 41.667 0.00 0.00 41.02 2.43
2270 2327 4.332819 CCGTCAGGACATTCTATCAAAACC 59.667 45.833 0.00 0.00 41.02 3.27
2274 2331 4.641989 CAGGACATTCTATCAAAACCCTGG 59.358 45.833 0.00 0.00 36.07 4.45
2280 2337 0.988832 TATCAAAACCCTGGCGTCCT 59.011 50.000 0.00 0.00 0.00 3.85
2324 2381 7.507956 TCGGAACCCTGACTTATGAGATTTATA 59.492 37.037 0.00 0.00 0.00 0.98
2349 2406 7.810658 ACATCTAGCATATCCGCAATTTTTAG 58.189 34.615 0.00 0.00 0.00 1.85
2376 2433 6.642430 TGCTTGGCTATTATTTTCTTGCATT 58.358 32.000 0.00 0.00 0.00 3.56
2407 2464 4.420522 TTGCTTGCAGGAAAAATCCTTT 57.579 36.364 0.00 0.00 38.22 3.11
2423 2480 3.371034 TCCTTTGTGGATAGGTCGATCA 58.629 45.455 0.00 0.00 40.56 2.92
2432 2489 1.107945 TAGGTCGATCATGCCGTTGA 58.892 50.000 0.00 0.00 0.00 3.18
2440 2497 0.948623 TCATGCCGTTGACTTGGTCG 60.949 55.000 0.00 0.00 34.95 4.79
2449 2506 2.740447 GTTGACTTGGTCGATAACACCC 59.260 50.000 0.00 0.00 34.95 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.460497 GTCCTCCTCCTCCCCCATC 60.460 68.421 0.00 0.00 0.00 3.51
1 2 2.706071 GTCCTCCTCCTCCCCCAT 59.294 66.667 0.00 0.00 0.00 4.00
2 3 3.695825 GGTCCTCCTCCTCCCCCA 61.696 72.222 0.00 0.00 0.00 4.96
3 4 4.862823 CGGTCCTCCTCCTCCCCC 62.863 77.778 0.00 0.00 0.00 5.40
4 5 3.742248 CTCGGTCCTCCTCCTCCCC 62.742 73.684 0.00 0.00 0.00 4.81
5 6 2.123640 CTCGGTCCTCCTCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
6 7 1.454295 GTCTCGGTCCTCCTCCTCC 60.454 68.421 0.00 0.00 0.00 4.30
7 8 0.323542 TTGTCTCGGTCCTCCTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
8 9 0.323908 CTTGTCTCGGTCCTCCTCCT 60.324 60.000 0.00 0.00 0.00 3.69
9 10 1.324005 CCTTGTCTCGGTCCTCCTCC 61.324 65.000 0.00 0.00 0.00 4.30
10 11 1.324005 CCCTTGTCTCGGTCCTCCTC 61.324 65.000 0.00 0.00 0.00 3.71
11 12 1.305381 CCCTTGTCTCGGTCCTCCT 60.305 63.158 0.00 0.00 0.00 3.69
12 13 2.359967 CCCCTTGTCTCGGTCCTCC 61.360 68.421 0.00 0.00 0.00 4.30
13 14 1.305046 TCCCCTTGTCTCGGTCCTC 60.305 63.158 0.00 0.00 0.00 3.71
14 15 1.305381 CTCCCCTTGTCTCGGTCCT 60.305 63.158 0.00 0.00 0.00 3.85
15 16 2.359967 CCTCCCCTTGTCTCGGTCC 61.360 68.421 0.00 0.00 0.00 4.46
16 17 2.359967 CCCTCCCCTTGTCTCGGTC 61.360 68.421 0.00 0.00 0.00 4.79
17 18 2.284699 CCCTCCCCTTGTCTCGGT 60.285 66.667 0.00 0.00 0.00 4.69
18 19 3.787001 GCCCTCCCCTTGTCTCGG 61.787 72.222 0.00 0.00 0.00 4.63
19 20 3.003173 TGCCCTCCCCTTGTCTCG 61.003 66.667 0.00 0.00 0.00 4.04
20 21 2.674220 CCTGCCCTCCCCTTGTCTC 61.674 68.421 0.00 0.00 0.00 3.36
21 22 2.612115 CCTGCCCTCCCCTTGTCT 60.612 66.667 0.00 0.00 0.00 3.41
22 23 3.732849 CCCTGCCCTCCCCTTGTC 61.733 72.222 0.00 0.00 0.00 3.18
73 74 4.505970 CCCCTCTCCCTCCCCCTG 62.506 77.778 0.00 0.00 0.00 4.45
76 77 3.462501 ATCCCCCTCTCCCTCCCC 61.463 72.222 0.00 0.00 0.00 4.81
77 78 2.122189 CATCCCCCTCTCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
78 79 2.122189 CCATCCCCCTCTCCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
79 80 2.122189 CCCATCCCCCTCTCCCTC 60.122 72.222 0.00 0.00 0.00 4.30
80 81 4.523282 GCCCATCCCCCTCTCCCT 62.523 72.222 0.00 0.00 0.00 4.20
81 82 4.843331 TGCCCATCCCCCTCTCCC 62.843 72.222 0.00 0.00 0.00 4.30
82 83 3.174265 CTGCCCATCCCCCTCTCC 61.174 72.222 0.00 0.00 0.00 3.71
83 84 2.040464 TCTGCCCATCCCCCTCTC 60.040 66.667 0.00 0.00 0.00 3.20
84 85 2.040043 CTCTGCCCATCCCCCTCT 60.040 66.667 0.00 0.00 0.00 3.69
85 86 3.174265 CCTCTGCCCATCCCCCTC 61.174 72.222 0.00 0.00 0.00 4.30
86 87 3.287954 TTCCTCTGCCCATCCCCCT 62.288 63.158 0.00 0.00 0.00 4.79
87 88 2.696125 TTCCTCTGCCCATCCCCC 60.696 66.667 0.00 0.00 0.00 5.40
88 89 2.761465 CCTTCCTCTGCCCATCCCC 61.761 68.421 0.00 0.00 0.00 4.81
89 90 2.761465 CCCTTCCTCTGCCCATCCC 61.761 68.421 0.00 0.00 0.00 3.85
90 91 2.761465 CCCCTTCCTCTGCCCATCC 61.761 68.421 0.00 0.00 0.00 3.51
91 92 1.694169 TCCCCTTCCTCTGCCCATC 60.694 63.158 0.00 0.00 0.00 3.51
92 93 2.003548 GTCCCCTTCCTCTGCCCAT 61.004 63.158 0.00 0.00 0.00 4.00
93 94 2.610859 GTCCCCTTCCTCTGCCCA 60.611 66.667 0.00 0.00 0.00 5.36
94 95 3.412408 GGTCCCCTTCCTCTGCCC 61.412 72.222 0.00 0.00 0.00 5.36
95 96 3.787001 CGGTCCCCTTCCTCTGCC 61.787 72.222 0.00 0.00 0.00 4.85
96 97 3.787001 CCGGTCCCCTTCCTCTGC 61.787 72.222 0.00 0.00 0.00 4.26
97 98 3.083997 CCCGGTCCCCTTCCTCTG 61.084 72.222 0.00 0.00 0.00 3.35
98 99 4.416601 CCCCGGTCCCCTTCCTCT 62.417 72.222 0.00 0.00 0.00 3.69
196 197 1.309499 TTTTATTGCAGGCGGACCCG 61.309 55.000 3.73 3.73 43.09 5.28
197 198 1.111277 ATTTTATTGCAGGCGGACCC 58.889 50.000 0.00 0.00 36.11 4.46
198 199 2.481276 GGAATTTTATTGCAGGCGGACC 60.481 50.000 0.00 0.00 0.00 4.46
199 200 2.481276 GGGAATTTTATTGCAGGCGGAC 60.481 50.000 0.00 0.00 0.00 4.79
200 201 1.754226 GGGAATTTTATTGCAGGCGGA 59.246 47.619 0.00 0.00 0.00 5.54
203 204 5.691754 CGATAAAGGGAATTTTATTGCAGGC 59.308 40.000 0.00 0.00 34.31 4.85
233 234 0.325860 ATACGGTTGGGGCAGTCCTA 60.326 55.000 0.00 0.00 35.33 2.94
323 324 4.892198 AGGCTTCTATGTAAAGGGGTAGA 58.108 43.478 0.00 0.00 0.00 2.59
325 326 5.339695 CCAAAGGCTTCTATGTAAAGGGGTA 60.340 44.000 0.00 0.00 0.00 3.69
326 327 4.569865 CCAAAGGCTTCTATGTAAAGGGGT 60.570 45.833 0.00 0.00 0.00 4.95
329 330 4.640647 GGTCCAAAGGCTTCTATGTAAAGG 59.359 45.833 0.00 0.00 0.00 3.11
334 335 1.065418 CCGGTCCAAAGGCTTCTATGT 60.065 52.381 0.00 0.00 0.00 2.29
365 366 6.365518 GGATACAAGCTCTTACGGCTAATTAC 59.634 42.308 0.00 0.00 39.30 1.89
420 421 6.314400 AGACGTAAACTAGTGCACAAAAAGAA 59.686 34.615 21.04 0.00 0.00 2.52
424 425 6.425577 AAAGACGTAAACTAGTGCACAAAA 57.574 33.333 21.04 2.80 0.00 2.44
425 426 6.425577 AAAAGACGTAAACTAGTGCACAAA 57.574 33.333 21.04 5.62 0.00 2.83
448 449 2.773487 CGTCTTGGTATTTGTGGTGGA 58.227 47.619 0.00 0.00 0.00 4.02
469 470 9.903682 AAAATATTCGGAAGATGATTGCTATTG 57.096 29.630 0.00 0.00 41.60 1.90
473 474 7.500227 TCTCAAAATATTCGGAAGATGATTGCT 59.500 33.333 14.43 0.00 41.60 3.91
484 485 4.788925 ATGGGGTCTCAAAATATTCGGA 57.211 40.909 0.00 0.00 0.00 4.55
521 522 2.975732 TTTTGTTGCACATGCCTGAA 57.024 40.000 0.49 0.00 41.18 3.02
551 553 2.297315 AGTTGATCGTGCTGAAGAGACA 59.703 45.455 0.00 0.00 0.00 3.41
553 555 3.005791 TGAAGTTGATCGTGCTGAAGAGA 59.994 43.478 0.00 0.00 0.00 3.10
620 622 6.171213 GCTTTAGTGTTAGAAGGCTAAGGAA 58.829 40.000 0.00 0.00 37.28 3.36
717 719 2.447250 CACATATCGTGTTACGCTCGT 58.553 47.619 0.00 0.00 42.21 4.18
761 763 1.404315 CGAGTGGCTAGGGAGAAACAC 60.404 57.143 0.00 0.00 0.00 3.32
762 764 0.895530 CGAGTGGCTAGGGAGAAACA 59.104 55.000 0.00 0.00 0.00 2.83
781 783 4.165779 CAACAATGGACGTCCTAAAATGC 58.834 43.478 33.39 6.69 36.82 3.56
833 835 3.926616 ACCTTACGAGACAACCATTCAG 58.073 45.455 0.00 0.00 0.00 3.02
851 856 5.629366 GCCACTGCTATTTTAGGACTAACCT 60.629 44.000 0.00 0.00 42.78 3.50
888 893 5.970640 AGAGGATGGGAGGTACTATTTTTGA 59.029 40.000 0.00 0.00 41.55 2.69
943 948 5.458452 TGCACTAATTTCTTTCTGTTTTGCG 59.542 36.000 0.00 0.00 0.00 4.85
950 955 9.252962 AGATTTGTTTGCACTAATTTCTTTCTG 57.747 29.630 0.00 0.00 29.64 3.02
952 957 9.248291 TGAGATTTGTTTGCACTAATTTCTTTC 57.752 29.630 0.00 0.00 33.30 2.62
955 960 7.715657 TGTGAGATTTGTTTGCACTAATTTCT 58.284 30.769 0.00 0.00 33.30 2.52
1011 1016 1.737816 GACCGCCGGTAATAGCTGA 59.262 57.895 9.73 0.00 35.25 4.26
1122 1130 1.375908 GTTCATGGACAGCGGCTCA 60.376 57.895 0.00 0.00 0.00 4.26
1254 1262 3.170672 AGCACCACCTCTGGCACA 61.171 61.111 0.00 0.00 42.08 4.57
1308 1316 2.021068 GCTCCTCTGCATACGAGCCA 62.021 60.000 14.85 0.00 41.52 4.75
1317 1328 1.953231 CTGTCGATGGCTCCTCTGCA 61.953 60.000 0.00 0.00 34.04 4.41
1330 1341 3.733960 CGTGACCGGCTCTGTCGA 61.734 66.667 0.00 0.00 35.46 4.20
1665 1720 5.105513 TGTTCTGATCTGTAGCAATTCGGTA 60.106 40.000 0.00 0.00 0.00 4.02
1698 1753 7.664318 AGGAGGAAATAAACAACTACGAACAAT 59.336 33.333 0.00 0.00 0.00 2.71
1699 1754 6.993902 AGGAGGAAATAAACAACTACGAACAA 59.006 34.615 0.00 0.00 0.00 2.83
1700 1755 6.527423 AGGAGGAAATAAACAACTACGAACA 58.473 36.000 0.00 0.00 0.00 3.18
1701 1756 7.430992 AAGGAGGAAATAAACAACTACGAAC 57.569 36.000 0.00 0.00 0.00 3.95
1702 1757 7.935210 AGAAAGGAGGAAATAAACAACTACGAA 59.065 33.333 0.00 0.00 0.00 3.85
1703 1758 7.447594 AGAAAGGAGGAAATAAACAACTACGA 58.552 34.615 0.00 0.00 0.00 3.43
1704 1759 7.668525 AGAAAGGAGGAAATAAACAACTACG 57.331 36.000 0.00 0.00 0.00 3.51
1705 1760 9.894783 GAAAGAAAGGAGGAAATAAACAACTAC 57.105 33.333 0.00 0.00 0.00 2.73
1706 1761 9.074576 GGAAAGAAAGGAGGAAATAAACAACTA 57.925 33.333 0.00 0.00 0.00 2.24
1707 1762 7.785028 AGGAAAGAAAGGAGGAAATAAACAACT 59.215 33.333 0.00 0.00 0.00 3.16
1748 1803 2.467566 TTGTTTCTCCCTTCGTAGCC 57.532 50.000 0.00 0.00 0.00 3.93
1800 1855 1.374252 CGAGTCCTTGGACCCAACG 60.374 63.158 15.44 12.25 0.00 4.10
1832 1887 0.951558 ATTGACAAGACGTGTTGGCC 59.048 50.000 26.71 18.23 41.96 5.36
1875 1930 2.151202 CCGCAGAACACTTTGTGGTAT 58.849 47.619 2.72 0.00 39.54 2.73
1906 1962 7.719633 GCACTATATTTTGGAATGGAGGAAGTA 59.280 37.037 0.00 0.00 0.00 2.24
1907 1963 6.547510 GCACTATATTTTGGAATGGAGGAAGT 59.452 38.462 0.00 0.00 0.00 3.01
1908 1964 6.293626 CGCACTATATTTTGGAATGGAGGAAG 60.294 42.308 0.00 0.00 0.00 3.46
1909 1965 5.530915 CGCACTATATTTTGGAATGGAGGAA 59.469 40.000 0.00 0.00 0.00 3.36
1910 1966 5.063204 CGCACTATATTTTGGAATGGAGGA 58.937 41.667 0.00 0.00 0.00 3.71
1911 1967 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
1912 1968 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
1913 1969 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
1914 1970 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
1915 1971 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
1916 1972 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
1917 1973 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
1918 1974 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
1919 1975 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
1920 1976 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
1921 1977 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
1922 1978 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
1935 1991 3.488090 GAACCTCGGAAAGCGCGG 61.488 66.667 8.83 0.00 0.00 6.46
1936 1992 2.314647 TTGAACCTCGGAAAGCGCG 61.315 57.895 0.00 0.00 0.00 6.86
1937 1993 1.206831 GTTGAACCTCGGAAAGCGC 59.793 57.895 0.00 0.00 0.00 5.92
1938 1994 1.226746 AAGTTGAACCTCGGAAAGCG 58.773 50.000 0.00 0.00 0.00 4.68
1939 1995 2.616842 TCAAAGTTGAACCTCGGAAAGC 59.383 45.455 0.00 0.00 33.55 3.51
1940 1996 3.003378 GGTCAAAGTTGAACCTCGGAAAG 59.997 47.826 0.00 0.00 38.96 2.62
1941 1997 2.946990 GGTCAAAGTTGAACCTCGGAAA 59.053 45.455 0.00 0.00 38.96 3.13
1942 1998 2.092861 TGGTCAAAGTTGAACCTCGGAA 60.093 45.455 6.62 0.00 44.20 4.30
1943 1999 1.487142 TGGTCAAAGTTGAACCTCGGA 59.513 47.619 6.62 0.00 44.20 4.55
1944 2000 1.961793 TGGTCAAAGTTGAACCTCGG 58.038 50.000 6.62 0.00 44.20 4.63
1945 2001 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
1946 2002 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
1947 2003 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
1948 2004 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
1949 2005 9.535878 TGGTTAAATTTATGGTCAAAGTTGAAC 57.464 29.630 1.98 1.98 45.04 3.18
1951 2007 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
1952 2008 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
1953 2009 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
1954 2010 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
1955 2011 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
1956 2012 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
1957 2013 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
1958 2014 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
1959 2015 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
1960 2016 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
1961 2017 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
1962 2018 7.537306 CAGTTGGTCTCGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
1963 2019 7.590279 CAGTTGGTCTCGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
1964 2020 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
1965 2021 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
1966 2022 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
1967 2023 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
1968 2024 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
1969 2025 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
1970 2026 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
1971 2027 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
1972 2028 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
1973 2029 2.317609 CCGCAGTTGGTCTCGTTGG 61.318 63.158 0.00 0.00 0.00 3.77
1974 2030 1.594293 ACCGCAGTTGGTCTCGTTG 60.594 57.895 0.00 0.00 37.91 4.10
1975 2031 1.594293 CACCGCAGTTGGTCTCGTT 60.594 57.895 0.00 0.00 41.38 3.85
1976 2032 2.029073 CACCGCAGTTGGTCTCGT 59.971 61.111 0.00 0.00 41.38 4.18
1977 2033 2.738521 CCACCGCAGTTGGTCTCG 60.739 66.667 0.00 0.00 41.38 4.04
1978 2034 2.358737 CCCACCGCAGTTGGTCTC 60.359 66.667 0.00 0.00 41.38 3.36
1979 2035 2.847234 TCCCACCGCAGTTGGTCT 60.847 61.111 0.00 0.00 41.38 3.85
1980 2036 2.358737 CTCCCACCGCAGTTGGTC 60.359 66.667 0.00 0.00 41.38 4.02
1981 2037 1.990160 TTTCTCCCACCGCAGTTGGT 61.990 55.000 0.00 0.00 45.21 3.67
1982 2038 0.821711 TTTTCTCCCACCGCAGTTGG 60.822 55.000 0.00 0.00 0.00 3.77
1983 2039 1.028905 TTTTTCTCCCACCGCAGTTG 58.971 50.000 0.00 0.00 0.00 3.16
1984 2040 3.505835 TTTTTCTCCCACCGCAGTT 57.494 47.368 0.00 0.00 0.00 3.16
2031 2087 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
2032 2088 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
2033 2089 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
2034 2090 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
2035 2091 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
2036 2092 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
2037 2093 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
2062 2118 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
2063 2119 9.434559 GTAAATTTAACTATCAAGACCGATTGC 57.565 33.333 0.00 0.00 0.00 3.56
2064 2120 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
2065 2121 8.823818 CCGTAAATTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
2066 2122 7.983484 ACCGTAAATTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
2067 2123 7.322664 ACCGTAAATTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
2068 2124 7.276218 TGACCGTAAATTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
2069 2125 8.483307 TGACCGTAAATTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
2078 2134 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
2079 2135 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
2080 2136 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
2081 2137 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
2082 2138 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
2083 2139 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
2084 2140 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
2085 2141 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
2086 2142 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
2087 2143 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
2088 2144 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
2089 2145 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
2090 2146 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
2091 2147 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
2092 2148 0.181587 TCCCCGTGCTTCAACTTTGA 59.818 50.000 0.00 0.00 34.92 2.69
2093 2149 1.247567 ATCCCCGTGCTTCAACTTTG 58.752 50.000 0.00 0.00 0.00 2.77
2094 2150 2.304761 TCTATCCCCGTGCTTCAACTTT 59.695 45.455 0.00 0.00 0.00 2.66
2095 2151 1.906574 TCTATCCCCGTGCTTCAACTT 59.093 47.619 0.00 0.00 0.00 2.66
2096 2152 1.482593 CTCTATCCCCGTGCTTCAACT 59.517 52.381 0.00 0.00 0.00 3.16
2097 2153 1.480954 TCTCTATCCCCGTGCTTCAAC 59.519 52.381 0.00 0.00 0.00 3.18
2098 2154 1.860641 TCTCTATCCCCGTGCTTCAA 58.139 50.000 0.00 0.00 0.00 2.69
2099 2155 1.860641 TTCTCTATCCCCGTGCTTCA 58.139 50.000 0.00 0.00 0.00 3.02
2100 2156 2.827652 CTTTCTCTATCCCCGTGCTTC 58.172 52.381 0.00 0.00 0.00 3.86
2101 2157 1.134371 GCTTTCTCTATCCCCGTGCTT 60.134 52.381 0.00 0.00 0.00 3.91
2102 2158 0.466124 GCTTTCTCTATCCCCGTGCT 59.534 55.000 0.00 0.00 0.00 4.40
2103 2159 0.178068 TGCTTTCTCTATCCCCGTGC 59.822 55.000 0.00 0.00 0.00 5.34
2104 2160 1.482593 AGTGCTTTCTCTATCCCCGTG 59.517 52.381 0.00 0.00 0.00 4.94
2105 2161 1.867363 AGTGCTTTCTCTATCCCCGT 58.133 50.000 0.00 0.00 0.00 5.28
2106 2162 2.693591 TGTAGTGCTTTCTCTATCCCCG 59.306 50.000 0.00 0.00 0.00 5.73
2107 2163 4.965200 ATGTAGTGCTTTCTCTATCCCC 57.035 45.455 0.00 0.00 0.00 4.81
2108 2164 5.525378 CACAATGTAGTGCTTTCTCTATCCC 59.475 44.000 0.00 0.00 32.04 3.85
2109 2165 5.525378 CCACAATGTAGTGCTTTCTCTATCC 59.475 44.000 0.00 0.00 38.18 2.59
2110 2166 6.341316 TCCACAATGTAGTGCTTTCTCTATC 58.659 40.000 0.00 0.00 38.18 2.08
2111 2167 6.299805 TCCACAATGTAGTGCTTTCTCTAT 57.700 37.500 0.00 0.00 38.18 1.98
2112 2168 5.738619 TCCACAATGTAGTGCTTTCTCTA 57.261 39.130 0.00 0.00 38.18 2.43
2113 2169 4.623932 TCCACAATGTAGTGCTTTCTCT 57.376 40.909 0.00 0.00 38.18 3.10
2114 2170 5.392380 CCATTCCACAATGTAGTGCTTTCTC 60.392 44.000 0.00 0.00 38.22 2.87
2115 2171 4.460382 CCATTCCACAATGTAGTGCTTTCT 59.540 41.667 0.00 0.00 38.22 2.52
2116 2172 4.458989 TCCATTCCACAATGTAGTGCTTTC 59.541 41.667 0.00 0.00 38.22 2.62
2117 2173 4.406456 TCCATTCCACAATGTAGTGCTTT 58.594 39.130 0.00 0.00 38.22 3.51
2118 2174 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
2119 2175 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
2120 2176 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
2121 2177 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
2122 2178 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
2123 2179 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
2124 2180 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
2125 2181 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
2126 2182 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
2127 2183 6.590656 TTATTACTCCCTCCATTCCACAAT 57.409 37.500 0.00 0.00 0.00 2.71
2128 2184 6.395780 TTTATTACTCCCTCCATTCCACAA 57.604 37.500 0.00 0.00 0.00 3.33
2129 2185 6.590656 ATTTATTACTCCCTCCATTCCACA 57.409 37.500 0.00 0.00 0.00 4.17
2130 2186 6.655425 GCTATTTATTACTCCCTCCATTCCAC 59.345 42.308 0.00 0.00 0.00 4.02
2131 2187 6.562608 AGCTATTTATTACTCCCTCCATTCCA 59.437 38.462 0.00 0.00 0.00 3.53
2132 2188 7.021998 AGCTATTTATTACTCCCTCCATTCC 57.978 40.000 0.00 0.00 0.00 3.01
2133 2189 7.766738 GCTAGCTATTTATTACTCCCTCCATTC 59.233 40.741 7.70 0.00 0.00 2.67
2134 2190 7.311360 GGCTAGCTATTTATTACTCCCTCCATT 60.311 40.741 15.72 0.00 0.00 3.16
2135 2191 6.157123 GGCTAGCTATTTATTACTCCCTCCAT 59.843 42.308 15.72 0.00 0.00 3.41
2136 2192 5.484290 GGCTAGCTATTTATTACTCCCTCCA 59.516 44.000 15.72 0.00 0.00 3.86
2137 2193 5.484290 TGGCTAGCTATTTATTACTCCCTCC 59.516 44.000 15.72 0.00 0.00 4.30
2138 2194 6.607004 TGGCTAGCTATTTATTACTCCCTC 57.393 41.667 15.72 0.00 0.00 4.30
2139 2195 7.388638 TTTGGCTAGCTATTTATTACTCCCT 57.611 36.000 15.72 0.00 0.00 4.20
2140 2196 8.637196 ATTTTGGCTAGCTATTTATTACTCCC 57.363 34.615 15.72 0.00 0.00 4.30
2161 2217 5.270979 ACCCAAGTCTAAGCCCTAATTTT 57.729 39.130 0.00 0.00 0.00 1.82
2209 2265 8.373992 GCTACGAGTGAAGACAAATAAAAGTAG 58.626 37.037 0.00 0.00 0.00 2.57
2211 2267 6.128902 CGCTACGAGTGAAGACAAATAAAAGT 60.129 38.462 0.00 0.00 0.00 2.66
2216 2272 4.155462 AGTCGCTACGAGTGAAGACAAATA 59.845 41.667 0.00 0.00 38.17 1.40
2227 2283 0.738762 TCGCACTAGTCGCTACGAGT 60.739 55.000 13.14 0.00 41.64 4.18
2230 2286 1.297451 GGTCGCACTAGTCGCTACG 60.297 63.158 13.14 4.67 0.00 3.51
2237 2294 1.303074 TCCTGACGGTCGCACTAGT 60.303 57.895 3.34 0.00 0.00 2.57
2253 2310 3.381590 GCCAGGGTTTTGATAGAATGTCC 59.618 47.826 0.00 0.00 0.00 4.02
2259 2316 1.065709 GGACGCCAGGGTTTTGATAGA 60.066 52.381 0.00 0.00 0.00 1.98
2324 2381 6.639632 AAAAATTGCGGATATGCTAGATGT 57.360 33.333 0.00 0.00 35.36 3.06
2349 2406 6.757947 TGCAAGAAAATAATAGCCAAGCAATC 59.242 34.615 0.00 0.00 0.00 2.67
2376 2433 5.384063 TTCCTGCAAGCAAATCGAATAAA 57.616 34.783 0.00 0.00 0.00 1.40
2407 2464 1.344438 GGCATGATCGACCTATCCACA 59.656 52.381 0.00 0.00 0.00 4.17
2418 2475 0.374758 CCAAGTCAACGGCATGATCG 59.625 55.000 0.00 1.60 0.00 3.69
2422 2479 0.948623 TCGACCAAGTCAACGGCATG 60.949 55.000 0.00 0.00 32.09 4.06
2423 2480 0.036388 ATCGACCAAGTCAACGGCAT 60.036 50.000 0.00 0.00 32.09 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.