Multiple sequence alignment - TraesCS5A01G012200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G012200 chr5A 100.000 4806 0 0 1 4806 8055763 8060568 0.000000e+00 8876.0
1 TraesCS5A01G012200 chr5A 91.304 46 4 0 4643 4688 329846166 329846211 4.020000e-06 63.9
2 TraesCS5A01G012200 chr5B 87.364 1836 108 52 2095 3871 42159457 42157687 0.000000e+00 1991.0
3 TraesCS5A01G012200 chr5B 93.003 929 36 10 906 1810 10268514 10267591 0.000000e+00 1328.0
4 TraesCS5A01G012200 chr5B 85.857 898 96 19 3 885 10270486 10269605 0.000000e+00 926.0
5 TraesCS5A01G012200 chr5B 88.207 619 52 6 3948 4566 69521223 69521820 0.000000e+00 719.0
6 TraesCS5A01G012200 chr5B 89.076 357 30 6 3554 3906 10267454 10267103 7.390000e-118 435.0
7 TraesCS5A01G012200 chr5B 98.333 120 1 1 1813 1931 10267469 10267588 4.870000e-50 209.0
8 TraesCS5A01G012200 chr5D 90.241 830 54 13 3003 3818 10037883 10038699 0.000000e+00 1059.0
9 TraesCS5A01G012200 chr5D 88.907 613 46 12 3954 4566 533670137 533669547 0.000000e+00 736.0
10 TraesCS5A01G012200 chr5D 88.744 613 48 13 3954 4566 434710338 434709747 0.000000e+00 730.0
11 TraesCS5A01G012200 chr5D 87.917 480 42 13 2095 2569 10036452 10036920 7.030000e-153 551.0
12 TraesCS5A01G012200 chr5D 91.083 314 15 3 2596 2907 10037162 10037464 3.460000e-111 412.0
13 TraesCS5A01G012200 chr5D 86.667 210 21 3 1739 1948 10036028 10036230 4.840000e-55 226.0
14 TraesCS5A01G012200 chr5D 91.860 86 7 0 3820 3905 10038784 10038869 2.350000e-23 121.0
15 TraesCS5A01G012200 chr5D 92.500 40 3 0 1842 1881 237426745 237426784 1.870000e-04 58.4
16 TraesCS5A01G012200 chr2D 88.553 629 51 8 3950 4578 485850303 485850910 0.000000e+00 743.0
17 TraesCS5A01G012200 chr2D 88.889 45 4 1 1854 1897 571892165 571892209 2.000000e-03 54.7
18 TraesCS5A01G012200 chr2D 100.000 28 0 0 1854 1881 271160237 271160210 9.000000e-03 52.8
19 TraesCS5A01G012200 chr4A 88.622 624 49 11 3943 4566 494124430 494125031 0.000000e+00 739.0
20 TraesCS5A01G012200 chr7A 88.655 617 50 7 3950 4566 726104422 726103826 0.000000e+00 734.0
21 TraesCS5A01G012200 chr7A 88.076 629 54 12 3950 4578 657308630 657309237 0.000000e+00 726.0
22 TraesCS5A01G012200 chr7A 87.840 625 55 10 3954 4578 631649490 631650093 0.000000e+00 713.0
23 TraesCS5A01G012200 chr6B 88.762 614 49 10 3953 4566 88942487 88941894 0.000000e+00 734.0
24 TraesCS5A01G012200 chr6B 87.146 459 41 12 3150 3601 572092276 572091829 5.550000e-139 505.0
25 TraesCS5A01G012200 chr6B 83.834 433 45 14 2156 2574 572093877 572093456 5.830000e-104 388.0
26 TraesCS5A01G012200 chr6B 88.745 231 16 5 2569 2798 572093325 572093104 1.700000e-69 274.0
27 TraesCS5A01G012200 chr6B 94.545 55 3 0 2569 2623 572093431 572093377 8.570000e-13 86.1
28 TraesCS5A01G012200 chr1A 88.780 615 48 7 3953 4566 487202585 487203179 0.000000e+00 734.0
29 TraesCS5A01G012200 chr1A 87.540 626 58 10 3954 4579 490477829 490477224 0.000000e+00 706.0
30 TraesCS5A01G012200 chr1A 78.636 660 98 27 233 881 355479780 355479153 9.690000e-107 398.0
31 TraesCS5A01G012200 chr3B 88.436 614 51 10 3953 4566 407412784 407412191 0.000000e+00 723.0
32 TraesCS5A01G012200 chr6A 87.840 625 54 11 3955 4578 79713140 79712537 0.000000e+00 713.0
33 TraesCS5A01G012200 chr6A 82.353 408 45 17 3306 3705 524333202 524332814 3.590000e-86 329.0
34 TraesCS5A01G012200 chr6A 88.837 215 13 7 1090 1304 524335029 524334826 2.220000e-63 254.0
35 TraesCS5A01G012200 chr6A 87.766 188 16 7 2816 2997 524333776 524333590 3.770000e-51 213.0
36 TraesCS5A01G012200 chr6A 90.909 55 5 0 826 880 203217322 203217376 1.860000e-09 75.0
37 TraesCS5A01G012200 chr6A 97.561 41 1 0 4643 4683 519949657 519949697 2.400000e-08 71.3
38 TraesCS5A01G012200 chr2A 87.859 626 53 12 3954 4579 417099611 417100213 0.000000e+00 713.0
39 TraesCS5A01G012200 chr2A 87.281 629 60 9 3951 4579 514882604 514883212 0.000000e+00 701.0
40 TraesCS5A01G012200 chr2A 95.238 42 2 0 4643 4684 54460637 54460596 3.100000e-07 67.6
41 TraesCS5A01G012200 chr3A 87.599 629 58 9 3950 4578 696150575 696151183 0.000000e+00 712.0
42 TraesCS5A01G012200 chr7B 87.864 618 54 12 3949 4566 434671754 434671158 0.000000e+00 706.0
43 TraesCS5A01G012200 chr7B 86.508 630 64 10 3951 4579 26452289 26451680 0.000000e+00 673.0
44 TraesCS5A01G012200 chr7B 90.244 82 8 0 1214 1295 262001218 262001299 1.830000e-19 108.0
45 TraesCS5A01G012200 chr7B 93.023 43 3 0 4642 4684 619084805 619084763 4.020000e-06 63.9
46 TraesCS5A01G012200 chr6D 79.095 818 103 50 2215 2997 382553319 382552535 7.180000e-138 501.0
47 TraesCS5A01G012200 chr6D 80.411 730 79 39 3003 3711 382552434 382551748 9.290000e-137 497.0
48 TraesCS5A01G012200 chr1D 77.904 878 133 39 23 881 283623760 283624595 1.550000e-134 490.0
49 TraesCS5A01G012200 chr3D 92.500 40 3 0 1842 1881 546116795 546116834 1.870000e-04 58.4
50 TraesCS5A01G012200 chr1B 92.500 40 3 0 1842 1881 494861590 494861551 1.870000e-04 58.4
51 TraesCS5A01G012200 chr4D 90.476 42 4 0 4636 4677 252218911 252218870 6.720000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G012200 chr5A 8055763 8060568 4805 False 8876.000000 8876 100.000000 1 4806 1 chr5A.!!$F1 4805
1 TraesCS5A01G012200 chr5B 42157687 42159457 1770 True 1991.000000 1991 87.364000 2095 3871 1 chr5B.!!$R1 1776
2 TraesCS5A01G012200 chr5B 10267103 10270486 3383 True 896.333333 1328 89.312000 3 3906 3 chr5B.!!$R2 3903
3 TraesCS5A01G012200 chr5B 69521223 69521820 597 False 719.000000 719 88.207000 3948 4566 1 chr5B.!!$F2 618
4 TraesCS5A01G012200 chr5D 533669547 533670137 590 True 736.000000 736 88.907000 3954 4566 1 chr5D.!!$R2 612
5 TraesCS5A01G012200 chr5D 434709747 434710338 591 True 730.000000 730 88.744000 3954 4566 1 chr5D.!!$R1 612
6 TraesCS5A01G012200 chr5D 10036028 10038869 2841 False 473.800000 1059 89.553600 1739 3905 5 chr5D.!!$F2 2166
7 TraesCS5A01G012200 chr2D 485850303 485850910 607 False 743.000000 743 88.553000 3950 4578 1 chr2D.!!$F1 628
8 TraesCS5A01G012200 chr4A 494124430 494125031 601 False 739.000000 739 88.622000 3943 4566 1 chr4A.!!$F1 623
9 TraesCS5A01G012200 chr7A 726103826 726104422 596 True 734.000000 734 88.655000 3950 4566 1 chr7A.!!$R1 616
10 TraesCS5A01G012200 chr7A 657308630 657309237 607 False 726.000000 726 88.076000 3950 4578 1 chr7A.!!$F2 628
11 TraesCS5A01G012200 chr7A 631649490 631650093 603 False 713.000000 713 87.840000 3954 4578 1 chr7A.!!$F1 624
12 TraesCS5A01G012200 chr6B 88941894 88942487 593 True 734.000000 734 88.762000 3953 4566 1 chr6B.!!$R1 613
13 TraesCS5A01G012200 chr6B 572091829 572093877 2048 True 313.275000 505 88.567500 2156 3601 4 chr6B.!!$R2 1445
14 TraesCS5A01G012200 chr1A 487202585 487203179 594 False 734.000000 734 88.780000 3953 4566 1 chr1A.!!$F1 613
15 TraesCS5A01G012200 chr1A 490477224 490477829 605 True 706.000000 706 87.540000 3954 4579 1 chr1A.!!$R2 625
16 TraesCS5A01G012200 chr1A 355479153 355479780 627 True 398.000000 398 78.636000 233 881 1 chr1A.!!$R1 648
17 TraesCS5A01G012200 chr3B 407412191 407412784 593 True 723.000000 723 88.436000 3953 4566 1 chr3B.!!$R1 613
18 TraesCS5A01G012200 chr6A 79712537 79713140 603 True 713.000000 713 87.840000 3955 4578 1 chr6A.!!$R1 623
19 TraesCS5A01G012200 chr6A 524332814 524335029 2215 True 265.333333 329 86.318667 1090 3705 3 chr6A.!!$R2 2615
20 TraesCS5A01G012200 chr2A 417099611 417100213 602 False 713.000000 713 87.859000 3954 4579 1 chr2A.!!$F1 625
21 TraesCS5A01G012200 chr2A 514882604 514883212 608 False 701.000000 701 87.281000 3951 4579 1 chr2A.!!$F2 628
22 TraesCS5A01G012200 chr3A 696150575 696151183 608 False 712.000000 712 87.599000 3950 4578 1 chr3A.!!$F1 628
23 TraesCS5A01G012200 chr7B 434671158 434671754 596 True 706.000000 706 87.864000 3949 4566 1 chr7B.!!$R2 617
24 TraesCS5A01G012200 chr7B 26451680 26452289 609 True 673.000000 673 86.508000 3951 4579 1 chr7B.!!$R1 628
25 TraesCS5A01G012200 chr6D 382551748 382553319 1571 True 499.000000 501 79.753000 2215 3711 2 chr6D.!!$R1 1496
26 TraesCS5A01G012200 chr1D 283623760 283624595 835 False 490.000000 490 77.904000 23 881 1 chr1D.!!$F1 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 667 0.307453 TACGCTGCTGCAGTTTGTTG 59.693 50.0 28.5 14.72 39.64 3.33 F
1788 2908 0.467290 AAATGTCACGGCACCCAAGT 60.467 50.0 0.0 0.00 0.00 3.16 F
2864 4943 0.695803 CAGGGATGGAGGGGTAGCTT 60.696 60.0 0.0 0.00 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 3256 0.107410 TCGAGCCCGGCATAAAACAT 60.107 50.0 13.15 0.0 36.24 2.71 R
3354 5895 0.106268 TGCAAGAAAACCTGGAGCCA 60.106 50.0 0.00 0.0 0.00 4.75 R
3934 6615 0.033504 ACTCAAAGCACCGTCGTCAT 59.966 50.0 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.066769 GCACTCGTTGCGTCGATA 57.933 55.556 0.00 0.00 42.79 2.92
35 36 4.201871 TGCGTCGATATCCAAAAATGTTCC 60.202 41.667 0.00 0.00 0.00 3.62
38 39 5.050363 CGTCGATATCCAAAAATGTTCCGAT 60.050 40.000 0.00 0.00 0.00 4.18
46 47 8.620116 ATCCAAAAATGTTCCGATTTTCAAAT 57.380 26.923 0.00 0.00 35.01 2.32
99 100 8.962884 AGCTTCAAAATTTTGTTCCTGTATTT 57.037 26.923 25.98 4.44 39.18 1.40
111 112 9.804758 TTTGTTCCTGTATTTAAAATTGTTCGT 57.195 25.926 0.00 0.00 0.00 3.85
112 113 8.789881 TGTTCCTGTATTTAAAATTGTTCGTG 57.210 30.769 0.00 0.00 0.00 4.35
151 164 9.322776 TGTTCAAAATTTCAAAATTTGTTCGTG 57.677 25.926 12.78 8.15 45.16 4.35
169 182 3.064820 TCGTGCAAGAAAGTTTGGAGTTC 59.935 43.478 0.00 0.00 0.00 3.01
170 183 3.181501 CGTGCAAGAAAGTTTGGAGTTCA 60.182 43.478 0.00 0.00 0.00 3.18
219 235 9.534565 TTGTTCGGTATTTCAAAATTTGATTGA 57.465 25.926 9.41 0.00 39.84 2.57
298 316 8.812329 CAGTTTCAAACAAATGTTCGGAATTTA 58.188 29.630 2.41 0.00 37.25 1.40
353 372 9.906111 GAGAGTTTCAAATTTTTGTTCATGTTC 57.094 29.630 3.18 0.00 39.18 3.18
357 376 9.914923 GTTTCAAATTTTTGTTCATGTTCCTAC 57.085 29.630 3.18 0.00 39.18 3.18
435 455 5.696724 TCAAAGAAGTTCGGAGTCTCAAATC 59.303 40.000 1.47 0.00 0.00 2.17
441 461 8.097662 AGAAGTTCGGAGTCTCAAATCTTATTT 58.902 33.333 1.47 0.00 0.00 1.40
520 541 5.414454 TCTTCATAATTCCAAAGGTGTTCCG 59.586 40.000 0.00 0.00 39.05 4.30
545 566 8.261908 CGAGTTTTCAAAGATTGTTCATGTTTC 58.738 33.333 0.00 0.00 0.00 2.78
552 573 9.859427 TCAAAGATTGTTCATGTTTCCAATATC 57.141 29.630 0.00 0.00 0.00 1.63
641 667 0.307453 TACGCTGCTGCAGTTTGTTG 59.693 50.000 28.50 14.72 39.64 3.33
656 682 0.948678 TGTTGTTTAGACTTGGCGCC 59.051 50.000 22.73 22.73 0.00 6.53
736 762 5.109500 AGAAGTTCTGGAGATCAAATCCC 57.891 43.478 4.10 0.00 35.86 3.85
767 793 8.087750 TGGTTGAGCATATTTTCTTTTTCGAAT 58.912 29.630 0.00 0.00 0.00 3.34
769 795 9.943465 GTTGAGCATATTTTCTTTTTCGAATTC 57.057 29.630 0.00 0.00 0.00 2.17
801 827 4.670347 GACCGATCGCTAAGAGTTTTACT 58.330 43.478 10.32 0.00 0.00 2.24
824 850 2.410322 AATGTCTGGCCAGTTCCGCA 62.410 55.000 31.58 21.69 0.00 5.69
825 851 3.050275 GTCTGGCCAGTTCCGCAC 61.050 66.667 31.58 17.78 0.00 5.34
832 858 2.356313 CAGTTCCGCACGCTCTGT 60.356 61.111 0.00 0.00 0.00 3.41
902 953 6.726258 CAATAGTTTGGAAAATTTGGGCTC 57.274 37.500 0.00 0.00 0.00 4.70
903 954 3.769739 AGTTTGGAAAATTTGGGCTCC 57.230 42.857 0.00 0.00 0.00 4.70
904 955 3.044894 AGTTTGGAAAATTTGGGCTCCA 58.955 40.909 5.40 5.40 36.16 3.86
927 2024 4.695455 ACCCAAATGTACATTCTCTTCGTG 59.305 41.667 21.02 13.17 0.00 4.35
1077 2174 1.064166 CCTCTTCTACCGGTGACCCTA 60.064 57.143 19.93 0.00 0.00 3.53
1324 2435 1.736586 GACATCGATCCGTGCTCCT 59.263 57.895 0.00 0.00 0.00 3.69
1328 2439 1.043816 ATCGATCCGTGCTCCTTCAT 58.956 50.000 0.00 0.00 0.00 2.57
1333 2444 2.169789 CCGTGCTCCTTCATCTGCG 61.170 63.158 0.00 0.00 0.00 5.18
1390 2501 9.553064 GTCCAGTCTAATGTCATGATATTTCTT 57.447 33.333 20.94 2.49 0.00 2.52
1487 2601 6.663093 TGGTTTTAGGTGCATCATTCTGTAAT 59.337 34.615 0.00 0.00 0.00 1.89
1491 2605 4.458397 AGGTGCATCATTCTGTAATCCAG 58.542 43.478 0.00 0.00 42.97 3.86
1511 2625 3.009033 CAGTCTGGAGGGGTTGTTATTGA 59.991 47.826 0.00 0.00 0.00 2.57
1615 2729 4.832266 ACATCACTTGATTTGCTTTGGGTA 59.168 37.500 0.00 0.00 31.21 3.69
1619 2733 6.919721 TCACTTGATTTGCTTTGGGTATAAC 58.080 36.000 0.00 0.00 0.00 1.89
1621 2735 7.029563 CACTTGATTTGCTTTGGGTATAACTC 58.970 38.462 0.00 0.00 0.00 3.01
1624 2744 7.775053 TGATTTGCTTTGGGTATAACTCTTT 57.225 32.000 0.00 0.00 0.00 2.52
1628 2748 6.969993 TGCTTTGGGTATAACTCTTTTTGT 57.030 33.333 0.00 0.00 0.00 2.83
1657 2777 8.007716 ACAATCGAAATTCTTGTAAACAGTACG 58.992 33.333 0.00 0.00 31.62 3.67
1658 2778 7.647907 ATCGAAATTCTTGTAAACAGTACGT 57.352 32.000 0.00 0.00 0.00 3.57
1666 2786 5.352016 TCTTGTAAACAGTACGTTTTGCACT 59.648 36.000 16.87 0.00 45.79 4.40
1710 2830 8.914011 TCTTATCATTCTCTAAATCGGTCTTCA 58.086 33.333 0.00 0.00 0.00 3.02
1788 2908 0.467290 AAATGTCACGGCACCCAAGT 60.467 50.000 0.00 0.00 0.00 3.16
1848 2983 1.200716 CCGTTACCTAGCTCGTGACAA 59.799 52.381 0.00 0.00 0.00 3.18
1892 3027 6.543430 TTGATCCTGGGAATTATGGTTTTG 57.457 37.500 0.00 0.00 0.00 2.44
1909 3054 6.559810 TGGTTTTGGATATAGTTTGCATTCG 58.440 36.000 0.00 0.00 0.00 3.34
1912 3057 6.618287 TTTGGATATAGTTTGCATTCGGAG 57.382 37.500 0.00 0.00 0.00 4.63
1917 3062 4.965119 ATAGTTTGCATTCGGAGGAAAC 57.035 40.909 10.18 10.18 44.46 2.78
1920 3065 4.965119 GTTTGCATTCGGAGGAAACTAT 57.035 40.909 10.66 0.00 44.43 2.12
1931 3076 4.587684 CGGAGGAAACTATGTACCTATGGT 59.412 45.833 0.00 0.00 44.43 3.55
1934 3079 5.206587 AGGAAACTATGTACCTATGGTCGT 58.793 41.667 0.00 0.00 40.61 4.34
1954 3144 1.229529 AGGATGGTTGGGAGGACGT 60.230 57.895 0.00 0.00 0.00 4.34
1956 3146 1.745489 GATGGTTGGGAGGACGTGC 60.745 63.158 0.00 0.00 0.00 5.34
1967 3157 1.227176 GGACGTGCGGGGAGATAAC 60.227 63.158 0.00 0.00 0.00 1.89
1974 3164 1.140852 TGCGGGGAGATAACAGATTGG 59.859 52.381 0.00 0.00 0.00 3.16
1987 3177 4.483476 ACAGATTGGTAAAAGACGTTGC 57.517 40.909 0.00 0.00 0.00 4.17
1988 3178 3.252458 ACAGATTGGTAAAAGACGTTGCC 59.748 43.478 0.00 0.00 34.12 4.52
2055 3245 7.531857 TTTATTTACAATTGCTGACTGGGAA 57.468 32.000 5.05 0.00 0.00 3.97
2065 3255 4.610333 TGCTGACTGGGAATCTCTAGTTA 58.390 43.478 0.00 0.00 0.00 2.24
2066 3256 5.023452 TGCTGACTGGGAATCTCTAGTTAA 58.977 41.667 0.00 0.00 0.00 2.01
2077 3267 8.568794 GGGAATCTCTAGTTAATGTTTTATGCC 58.431 37.037 0.00 0.00 0.00 4.40
2078 3268 8.283291 GGAATCTCTAGTTAATGTTTTATGCCG 58.717 37.037 0.00 0.00 0.00 5.69
2079 3269 7.730364 ATCTCTAGTTAATGTTTTATGCCGG 57.270 36.000 0.00 0.00 0.00 6.13
2154 3376 5.008613 TGTGTCAGACTGTATTTTCTTTGGC 59.991 40.000 1.59 0.00 0.00 4.52
2162 3384 6.681777 ACTGTATTTTCTTTGGCACTTGATC 58.318 36.000 0.00 0.00 0.00 2.92
2224 3446 8.595421 TCTAGAGGTCAGAGTGTTATATCGTAT 58.405 37.037 0.00 0.00 0.00 3.06
2240 3462 9.976776 TTATATCGTATCTTCACCTCTTATCCT 57.023 33.333 0.00 0.00 0.00 3.24
2247 3469 9.713713 GTATCTTCACCTCTTATCCTATTTTCC 57.286 37.037 0.00 0.00 0.00 3.13
2252 3474 8.807948 TCACCTCTTATCCTATTTTCCTTTTG 57.192 34.615 0.00 0.00 0.00 2.44
2262 3484 9.768215 ATCCTATTTTCCTTTTGAGGTGAATTA 57.232 29.630 0.00 0.00 0.00 1.40
2270 3492 6.780031 TCCTTTTGAGGTGAATTAACCATCAA 59.220 34.615 14.82 16.03 43.20 2.57
2311 3544 6.648879 TTCCACAGTTCTTTTCTTTATGGG 57.351 37.500 0.00 0.00 0.00 4.00
2317 3550 6.940867 ACAGTTCTTTTCTTTATGGGGTAGTC 59.059 38.462 0.00 0.00 0.00 2.59
2318 3551 6.940298 CAGTTCTTTTCTTTATGGGGTAGTCA 59.060 38.462 0.00 0.00 0.00 3.41
2329 3562 1.628327 GGGGTAGTCAGGGAAGGGAAT 60.628 57.143 0.00 0.00 0.00 3.01
2336 3569 4.923415 AGTCAGGGAAGGGAATTTTGTAG 58.077 43.478 0.00 0.00 0.00 2.74
2341 3678 4.294970 AGGGAAGGGAATTTTGTAGGACAT 59.705 41.667 0.00 0.00 0.00 3.06
2347 3684 7.718334 AGGGAATTTTGTAGGACATTTTAGG 57.282 36.000 0.00 0.00 0.00 2.69
2355 3692 4.530553 TGTAGGACATTTTAGGAGCTGACA 59.469 41.667 0.00 0.00 0.00 3.58
2366 3714 4.373156 AGGAGCTGACACCAGTATTTTT 57.627 40.909 0.00 0.00 42.35 1.94
2375 3723 7.119262 GCTGACACCAGTATTTTTAGTGTGTAT 59.881 37.037 0.00 0.00 41.52 2.29
2390 3738 6.531503 AGTGTGTATACATGCAGTTAGTCT 57.468 37.500 9.18 0.00 39.39 3.24
2391 3739 7.640597 AGTGTGTATACATGCAGTTAGTCTA 57.359 36.000 9.18 0.00 39.39 2.59
2447 3797 6.825721 ACATGATGAAGACAATAGAGTTTCCC 59.174 38.462 0.00 0.00 0.00 3.97
2548 3898 7.888546 AGTGGCATTTTAAACCTTGACTATAGT 59.111 33.333 4.68 4.68 0.00 2.12
2574 3924 9.790344 TTTGAAATGTATTTTCCCATGATTGTT 57.210 25.926 0.00 0.00 42.63 2.83
2578 3959 9.651913 AAATGTATTTTCCCATGATTGTTACAC 57.348 29.630 0.00 0.00 0.00 2.90
2613 4178 3.876274 TGTAGGTGCTCTAAGCTTGAG 57.124 47.619 9.86 14.35 42.97 3.02
2661 4332 8.199449 TGAGCTTTTGTCAGATTTCATTTCTTT 58.801 29.630 0.00 0.00 0.00 2.52
2768 4440 7.013220 AGGTTACTGGCAGATCTGATAGATTA 58.987 38.462 27.04 9.28 34.53 1.75
2836 4913 4.956075 TCAGTAATATCAGAGGTGTGCTGA 59.044 41.667 0.00 0.00 45.52 4.26
2864 4943 0.695803 CAGGGATGGAGGGGTAGCTT 60.696 60.000 0.00 0.00 0.00 3.74
2910 4989 2.479566 AGTGGTCATGGTTGCTACTG 57.520 50.000 0.00 0.00 0.00 2.74
2955 5038 8.497745 AGGTGACATATTAGAGAATTTGATGGT 58.502 33.333 0.00 0.00 30.87 3.55
2970 5053 3.221771 TGATGGTTTCAGGGAAGTGTTG 58.778 45.455 0.00 0.00 0.00 3.33
2974 5057 2.230660 GTTTCAGGGAAGTGTTGGGAG 58.769 52.381 0.00 0.00 0.00 4.30
3096 5605 2.421424 GAGCGGCAACATTCTGATTCTT 59.579 45.455 1.45 0.00 0.00 2.52
3097 5606 2.421424 AGCGGCAACATTCTGATTCTTC 59.579 45.455 1.45 0.00 0.00 2.87
3098 5607 2.421424 GCGGCAACATTCTGATTCTTCT 59.579 45.455 0.00 0.00 0.00 2.85
3101 5610 4.083110 CGGCAACATTCTGATTCTTCTGTT 60.083 41.667 0.00 0.00 0.00 3.16
3125 5639 7.759489 TTATAATGACCAAACATATGAGGGC 57.241 36.000 10.38 10.80 0.00 5.19
3144 5658 3.312697 GGGCGGAATCTAAAGACATGAAC 59.687 47.826 0.00 0.00 0.00 3.18
3148 5662 4.332819 CGGAATCTAAAGACATGAACCACC 59.667 45.833 0.00 0.00 0.00 4.61
3303 5838 4.148838 TCCAGGTTTTTGTCTTACCATGG 58.851 43.478 11.19 11.19 34.39 3.66
3304 5839 3.306019 CCAGGTTTTTGTCTTACCATGGC 60.306 47.826 13.04 0.00 34.32 4.40
3521 6065 0.654160 GGAAACATACCGTAAGCCGC 59.346 55.000 0.00 0.00 34.38 6.53
3522 6066 0.654160 GAAACATACCGTAAGCCGCC 59.346 55.000 0.00 0.00 34.38 6.13
3538 6082 1.810030 GCCGCCGAAGAAAGACGAT 60.810 57.895 0.00 0.00 0.00 3.73
3610 6164 8.393366 ACAGAAACATGATCTTCGTGAATATTG 58.607 33.333 0.00 0.00 36.89 1.90
3612 6166 9.166173 AGAAACATGATCTTCGTGAATATTGAA 57.834 29.630 0.00 0.00 36.89 2.69
3613 6167 9.430838 GAAACATGATCTTCGTGAATATTGAAG 57.569 33.333 0.00 7.41 40.30 3.02
3614 6168 8.498054 AACATGATCTTCGTGAATATTGAAGT 57.502 30.769 0.00 3.06 39.97 3.01
3674 6255 1.340889 TGAAGTTTGTCATGGCAAGGC 59.659 47.619 13.27 10.32 0.00 4.35
3689 6270 4.207165 GGCAAGGCTTGTGGATCTTTATA 58.793 43.478 26.71 0.00 0.00 0.98
3690 6271 4.829492 GGCAAGGCTTGTGGATCTTTATAT 59.171 41.667 26.71 0.00 0.00 0.86
3729 6311 5.637006 TTTTTGACGTCCCATCCAAATAG 57.363 39.130 14.12 0.00 0.00 1.73
3742 6324 4.584638 TCCAAATAGTATGGCACTGGTT 57.415 40.909 0.00 0.00 38.24 3.67
3771 6356 4.133820 TCATAATAAATGGGTGTCTGGCG 58.866 43.478 0.00 0.00 0.00 5.69
3811 6409 4.212214 CCGATTTGCTATCTCTTTACTGGC 59.788 45.833 0.00 0.00 0.00 4.85
3818 6416 5.130311 TGCTATCTCTTTACTGGCCATTACA 59.870 40.000 5.51 0.00 0.00 2.41
3863 6544 4.513198 TTCAGCAAAAATTCTTACCGGG 57.487 40.909 6.32 0.00 0.00 5.73
3906 6587 2.087009 GTCCGACTCGCCTGTTTCG 61.087 63.158 0.00 0.00 0.00 3.46
3907 6588 2.257371 CCGACTCGCCTGTTTCGA 59.743 61.111 0.00 0.00 33.20 3.71
3911 6592 3.862124 CTCGCCTGTTTCGAGGTG 58.138 61.111 4.66 0.00 46.82 4.00
3912 6593 2.357034 TCGCCTGTTTCGAGGTGC 60.357 61.111 0.00 0.00 42.52 5.01
3913 6594 2.664851 CGCCTGTTTCGAGGTGCA 60.665 61.111 0.00 0.00 36.83 4.57
3914 6595 2.946762 GCCTGTTTCGAGGTGCAC 59.053 61.111 8.80 8.80 35.29 4.57
3915 6596 2.617274 GCCTGTTTCGAGGTGCACC 61.617 63.158 29.22 29.22 35.29 5.01
3916 6597 2.317609 CCTGTTTCGAGGTGCACCG 61.318 63.158 29.68 18.99 42.08 4.94
3917 6598 2.280524 TGTTTCGAGGTGCACCGG 60.281 61.111 29.68 24.44 42.08 5.28
3918 6599 3.723348 GTTTCGAGGTGCACCGGC 61.723 66.667 29.68 23.43 42.08 6.13
3919 6600 3.936203 TTTCGAGGTGCACCGGCT 61.936 61.111 29.68 13.50 42.08 5.52
3920 6601 3.469863 TTTCGAGGTGCACCGGCTT 62.470 57.895 29.68 13.09 42.08 4.35
3921 6602 4.680237 TCGAGGTGCACCGGCTTG 62.680 66.667 29.68 16.63 42.08 4.01
3922 6603 4.988598 CGAGGTGCACCGGCTTGT 62.989 66.667 29.68 11.83 42.08 3.16
3923 6604 3.357079 GAGGTGCACCGGCTTGTG 61.357 66.667 29.68 0.00 42.08 3.33
3934 6615 3.286751 GCTTGTGCGGGCTGACAA 61.287 61.111 0.00 4.41 0.00 3.18
3935 6616 2.629656 GCTTGTGCGGGCTGACAAT 61.630 57.895 0.00 0.00 31.81 2.71
3936 6617 1.210931 CTTGTGCGGGCTGACAATG 59.789 57.895 0.00 0.00 31.81 2.82
3937 6618 1.228094 TTGTGCGGGCTGACAATGA 60.228 52.632 0.00 0.00 0.00 2.57
3938 6619 1.514678 TTGTGCGGGCTGACAATGAC 61.515 55.000 0.00 0.00 0.00 3.06
3939 6620 2.741985 TGCGGGCTGACAATGACG 60.742 61.111 0.00 0.00 0.00 4.35
3940 6621 2.434185 GCGGGCTGACAATGACGA 60.434 61.111 0.00 0.00 0.00 4.20
3941 6622 2.740714 GCGGGCTGACAATGACGAC 61.741 63.158 0.00 0.00 0.00 4.34
3942 6623 2.444624 CGGGCTGACAATGACGACG 61.445 63.158 0.00 0.00 0.00 5.12
3943 6624 2.100631 GGGCTGACAATGACGACGG 61.101 63.158 0.00 0.00 0.00 4.79
3944 6625 1.374252 GGCTGACAATGACGACGGT 60.374 57.895 0.00 0.00 0.00 4.83
3945 6626 1.626654 GGCTGACAATGACGACGGTG 61.627 60.000 0.00 0.00 0.00 4.94
3946 6627 1.781555 CTGACAATGACGACGGTGC 59.218 57.895 0.00 0.00 0.00 5.01
3947 6628 0.667487 CTGACAATGACGACGGTGCT 60.667 55.000 0.00 0.00 0.00 4.40
3973 6654 0.770557 AGGGGTGGAAAGTGGTAGCA 60.771 55.000 0.00 0.00 0.00 3.49
3974 6655 0.608308 GGGGTGGAAAGTGGTAGCAC 60.608 60.000 17.29 17.29 0.00 4.40
4018 6699 6.861065 TTTGTATCCGAGAAAATGCCTATC 57.139 37.500 0.00 0.00 0.00 2.08
4022 6703 1.867233 CCGAGAAAATGCCTATCCGTG 59.133 52.381 0.00 0.00 0.00 4.94
4025 6706 3.738281 CGAGAAAATGCCTATCCGTGTCT 60.738 47.826 0.00 0.00 0.00 3.41
4030 6711 3.845781 ATGCCTATCCGTGTCTGAAAT 57.154 42.857 0.00 0.00 0.00 2.17
4036 6717 5.509840 GCCTATCCGTGTCTGAAATATCTGT 60.510 44.000 0.00 0.00 0.00 3.41
4046 6727 5.629849 GTCTGAAATATCTGTATCCGAACCG 59.370 44.000 0.00 0.00 0.00 4.44
4051 6732 7.170828 TGAAATATCTGTATCCGAACCGAAATG 59.829 37.037 0.00 0.00 0.00 2.32
4197 6879 9.921637 TTATGCGAGGTAATTTTCAAAATTCTT 57.078 25.926 11.47 1.18 0.00 2.52
4424 7107 3.639538 CGTATCCGTTCCGAATCAAGAT 58.360 45.455 0.00 0.00 0.00 2.40
4463 7146 8.226819 ACATCTGATATGTATCCGTATTCGAT 57.773 34.615 0.00 0.00 39.71 3.59
4469 7152 9.563898 TGATATGTATCCGTATTCGATTAACAC 57.436 33.333 0.00 0.00 39.71 3.32
4529 7213 8.605746 TCGGATTCGTATTCGTTTTGAAAATAT 58.394 29.630 2.47 0.00 37.64 1.28
4530 7214 9.852481 CGGATTCGTATTCGTTTTGAAAATATA 57.148 29.630 0.00 0.00 40.71 0.86
4570 7254 2.032620 AGCACTATCCGATCCGTTTCT 58.967 47.619 0.00 0.00 0.00 2.52
4579 7263 2.579873 CGATCCGTTTCTACCCCTAGA 58.420 52.381 0.00 0.00 0.00 2.43
4580 7264 2.553172 CGATCCGTTTCTACCCCTAGAG 59.447 54.545 0.00 0.00 30.31 2.43
4581 7265 1.772836 TCCGTTTCTACCCCTAGAGC 58.227 55.000 0.00 0.00 30.31 4.09
4582 7266 0.751452 CCGTTTCTACCCCTAGAGCC 59.249 60.000 0.00 0.00 30.31 4.70
4583 7267 0.751452 CGTTTCTACCCCTAGAGCCC 59.249 60.000 0.00 0.00 30.31 5.19
4584 7268 1.129917 GTTTCTACCCCTAGAGCCCC 58.870 60.000 0.00 0.00 30.31 5.80
4585 7269 0.030399 TTTCTACCCCTAGAGCCCCC 60.030 60.000 0.00 0.00 30.31 5.40
4586 7270 2.203655 CTACCCCTAGAGCCCCCG 60.204 72.222 0.00 0.00 0.00 5.73
4587 7271 3.031873 TACCCCTAGAGCCCCCGT 61.032 66.667 0.00 0.00 0.00 5.28
4588 7272 2.998301 CTACCCCTAGAGCCCCCGTC 62.998 70.000 0.00 0.00 0.00 4.79
4590 7274 4.835891 CCCTAGAGCCCCCGTCGT 62.836 72.222 0.00 0.00 0.00 4.34
4591 7275 2.758737 CCTAGAGCCCCCGTCGTT 60.759 66.667 0.00 0.00 0.00 3.85
4592 7276 1.454479 CCTAGAGCCCCCGTCGTTA 60.454 63.158 0.00 0.00 0.00 3.18
4593 7277 1.039233 CCTAGAGCCCCCGTCGTTAA 61.039 60.000 0.00 0.00 0.00 2.01
4594 7278 1.038280 CTAGAGCCCCCGTCGTTAAT 58.962 55.000 0.00 0.00 0.00 1.40
4595 7279 1.411612 CTAGAGCCCCCGTCGTTAATT 59.588 52.381 0.00 0.00 0.00 1.40
4596 7280 0.616891 AGAGCCCCCGTCGTTAATTT 59.383 50.000 0.00 0.00 0.00 1.82
4597 7281 1.012086 GAGCCCCCGTCGTTAATTTC 58.988 55.000 0.00 0.00 0.00 2.17
4598 7282 0.616891 AGCCCCCGTCGTTAATTTCT 59.383 50.000 0.00 0.00 0.00 2.52
4599 7283 1.832998 AGCCCCCGTCGTTAATTTCTA 59.167 47.619 0.00 0.00 0.00 2.10
4600 7284 1.935873 GCCCCCGTCGTTAATTTCTAC 59.064 52.381 0.00 0.00 0.00 2.59
4601 7285 2.419159 GCCCCCGTCGTTAATTTCTACT 60.419 50.000 0.00 0.00 0.00 2.57
4602 7286 3.181476 GCCCCCGTCGTTAATTTCTACTA 60.181 47.826 0.00 0.00 0.00 1.82
4603 7287 4.502087 GCCCCCGTCGTTAATTTCTACTAT 60.502 45.833 0.00 0.00 0.00 2.12
4604 7288 5.604565 CCCCCGTCGTTAATTTCTACTATT 58.395 41.667 0.00 0.00 0.00 1.73
4605 7289 6.738453 GCCCCCGTCGTTAATTTCTACTATTA 60.738 42.308 0.00 0.00 0.00 0.98
4606 7290 7.381323 CCCCCGTCGTTAATTTCTACTATTAT 58.619 38.462 0.00 0.00 0.00 1.28
4607 7291 7.543520 CCCCCGTCGTTAATTTCTACTATTATC 59.456 40.741 0.00 0.00 0.00 1.75
4608 7292 8.302438 CCCCGTCGTTAATTTCTACTATTATCT 58.698 37.037 0.00 0.00 0.00 1.98
4609 7293 9.339492 CCCGTCGTTAATTTCTACTATTATCTC 57.661 37.037 0.00 0.00 0.00 2.75
4610 7294 9.339492 CCGTCGTTAATTTCTACTATTATCTCC 57.661 37.037 0.00 0.00 0.00 3.71
4611 7295 9.048922 CGTCGTTAATTTCTACTATTATCTCCG 57.951 37.037 0.00 0.00 0.00 4.63
4612 7296 9.890352 GTCGTTAATTTCTACTATTATCTCCGT 57.110 33.333 0.00 0.00 0.00 4.69
4681 7365 9.471084 AAATTTAAGACAAGTAATTTGGAACGG 57.529 29.630 0.00 0.00 41.25 4.44
4682 7366 7.804843 TTTAAGACAAGTAATTTGGAACGGA 57.195 32.000 0.00 0.00 41.25 4.69
4683 7367 5.941948 AAGACAAGTAATTTGGAACGGAG 57.058 39.130 0.00 0.00 41.25 4.63
4684 7368 5.223449 AGACAAGTAATTTGGAACGGAGA 57.777 39.130 0.00 0.00 41.25 3.71
4685 7369 5.617252 AGACAAGTAATTTGGAACGGAGAA 58.383 37.500 0.00 0.00 41.25 2.87
4686 7370 6.059484 AGACAAGTAATTTGGAACGGAGAAA 58.941 36.000 0.00 0.00 41.25 2.52
4687 7371 6.204882 AGACAAGTAATTTGGAACGGAGAAAG 59.795 38.462 0.00 0.00 41.25 2.62
4688 7372 5.240844 ACAAGTAATTTGGAACGGAGAAAGG 59.759 40.000 0.00 0.00 41.25 3.11
4689 7373 5.237236 AGTAATTTGGAACGGAGAAAGGA 57.763 39.130 0.00 0.00 0.00 3.36
4690 7374 5.816682 AGTAATTTGGAACGGAGAAAGGAT 58.183 37.500 0.00 0.00 0.00 3.24
4691 7375 5.880887 AGTAATTTGGAACGGAGAAAGGATC 59.119 40.000 0.00 0.00 0.00 3.36
4692 7376 2.380084 TTGGAACGGAGAAAGGATCG 57.620 50.000 0.00 0.00 0.00 3.69
4693 7377 1.552578 TGGAACGGAGAAAGGATCGA 58.447 50.000 0.00 0.00 0.00 3.59
4694 7378 1.203994 TGGAACGGAGAAAGGATCGAC 59.796 52.381 0.00 0.00 0.00 4.20
4695 7379 1.546834 GAACGGAGAAAGGATCGACG 58.453 55.000 0.00 0.00 37.82 5.12
4696 7380 0.172803 AACGGAGAAAGGATCGACGG 59.827 55.000 0.00 0.00 36.70 4.79
4697 7381 1.589196 CGGAGAAAGGATCGACGGC 60.589 63.158 0.00 0.00 0.00 5.68
4698 7382 1.589196 GGAGAAAGGATCGACGGCG 60.589 63.158 2.87 2.87 39.35 6.46
4699 7383 2.202756 AGAAAGGATCGACGGCGC 60.203 61.111 5.31 0.00 37.46 6.53
4700 7384 2.202756 GAAAGGATCGACGGCGCT 60.203 61.111 5.31 0.00 37.46 5.92
4701 7385 1.810030 GAAAGGATCGACGGCGCTT 60.810 57.895 5.31 0.00 37.46 4.68
4702 7386 2.025359 GAAAGGATCGACGGCGCTTG 62.025 60.000 5.31 2.40 37.46 4.01
4703 7387 2.501223 AAAGGATCGACGGCGCTTGA 62.501 55.000 5.31 2.13 37.46 3.02
4704 7388 2.890847 AAGGATCGACGGCGCTTGAG 62.891 60.000 5.31 0.00 37.46 3.02
4705 7389 3.621394 GATCGACGGCGCTTGAGC 61.621 66.667 5.31 0.67 37.46 4.26
4730 7414 6.040209 CATTGGGAATGGTTTTCAATCTCA 57.960 37.500 0.00 0.00 34.17 3.27
4731 7415 6.646267 CATTGGGAATGGTTTTCAATCTCAT 58.354 36.000 0.00 0.00 35.83 2.90
4732 7416 5.664294 TGGGAATGGTTTTCAATCTCATG 57.336 39.130 0.00 0.00 31.21 3.07
4733 7417 5.085920 TGGGAATGGTTTTCAATCTCATGT 58.914 37.500 0.00 0.00 31.21 3.21
4734 7418 5.543405 TGGGAATGGTTTTCAATCTCATGTT 59.457 36.000 0.00 0.00 31.21 2.71
4735 7419 5.870978 GGGAATGGTTTTCAATCTCATGTTG 59.129 40.000 0.00 0.00 0.00 3.33
4736 7420 5.349543 GGAATGGTTTTCAATCTCATGTTGC 59.650 40.000 0.00 0.00 0.00 4.17
4737 7421 5.733620 ATGGTTTTCAATCTCATGTTGCT 57.266 34.783 0.00 0.00 0.00 3.91
4738 7422 4.873817 TGGTTTTCAATCTCATGTTGCTG 58.126 39.130 0.00 0.00 0.00 4.41
4739 7423 4.341806 TGGTTTTCAATCTCATGTTGCTGT 59.658 37.500 0.00 0.00 0.00 4.40
4740 7424 4.919754 GGTTTTCAATCTCATGTTGCTGTC 59.080 41.667 0.00 0.00 0.00 3.51
4741 7425 5.507817 GGTTTTCAATCTCATGTTGCTGTCA 60.508 40.000 0.00 0.00 0.00 3.58
4742 7426 5.771153 TTTCAATCTCATGTTGCTGTCAA 57.229 34.783 0.00 0.00 0.00 3.18
4743 7427 5.771153 TTCAATCTCATGTTGCTGTCAAA 57.229 34.783 0.00 0.00 33.37 2.69
4744 7428 5.366829 TCAATCTCATGTTGCTGTCAAAG 57.633 39.130 0.00 0.00 33.37 2.77
4770 7454 6.715347 AAAAAGAGAGTACATGCCTGTTTT 57.285 33.333 0.00 0.32 35.71 2.43
4771 7455 7.817418 AAAAAGAGAGTACATGCCTGTTTTA 57.183 32.000 0.00 0.00 33.94 1.52
4772 7456 7.440523 AAAAGAGAGTACATGCCTGTTTTAG 57.559 36.000 0.00 0.00 33.50 1.85
4773 7457 5.746990 AGAGAGTACATGCCTGTTTTAGT 57.253 39.130 0.00 0.00 36.79 2.24
4774 7458 6.852420 AGAGAGTACATGCCTGTTTTAGTA 57.148 37.500 0.00 0.00 36.79 1.82
4775 7459 6.631962 AGAGAGTACATGCCTGTTTTAGTAC 58.368 40.000 0.00 0.00 36.79 2.73
4776 7460 6.437793 AGAGAGTACATGCCTGTTTTAGTACT 59.562 38.462 0.00 0.00 43.26 2.73
4777 7461 6.889019 GAGTACATGCCTGTTTTAGTACTC 57.111 41.667 12.86 12.86 46.05 2.59
4778 7462 5.731591 AGTACATGCCTGTTTTAGTACTCC 58.268 41.667 0.00 0.00 38.09 3.85
4779 7463 3.951663 ACATGCCTGTTTTAGTACTCCC 58.048 45.455 0.00 0.00 28.70 4.30
4780 7464 3.587506 ACATGCCTGTTTTAGTACTCCCT 59.412 43.478 0.00 0.00 28.70 4.20
4781 7465 4.042934 ACATGCCTGTTTTAGTACTCCCTT 59.957 41.667 0.00 0.00 28.70 3.95
4782 7466 4.281898 TGCCTGTTTTAGTACTCCCTTC 57.718 45.455 0.00 0.00 0.00 3.46
4783 7467 3.649023 TGCCTGTTTTAGTACTCCCTTCA 59.351 43.478 0.00 0.00 0.00 3.02
4784 7468 4.288626 TGCCTGTTTTAGTACTCCCTTCAT 59.711 41.667 0.00 0.00 0.00 2.57
4785 7469 5.222048 TGCCTGTTTTAGTACTCCCTTCATT 60.222 40.000 0.00 0.00 0.00 2.57
4786 7470 5.354513 GCCTGTTTTAGTACTCCCTTCATTC 59.645 44.000 0.00 0.00 0.00 2.67
4787 7471 6.712276 CCTGTTTTAGTACTCCCTTCATTCT 58.288 40.000 0.00 0.00 0.00 2.40
4788 7472 7.580882 GCCTGTTTTAGTACTCCCTTCATTCTA 60.581 40.741 0.00 0.00 0.00 2.10
4789 7473 7.764901 CCTGTTTTAGTACTCCCTTCATTCTAC 59.235 40.741 0.00 0.00 0.00 2.59
4790 7474 8.197592 TGTTTTAGTACTCCCTTCATTCTACA 57.802 34.615 0.00 0.00 0.00 2.74
4791 7475 8.653191 TGTTTTAGTACTCCCTTCATTCTACAA 58.347 33.333 0.00 0.00 0.00 2.41
4792 7476 9.668497 GTTTTAGTACTCCCTTCATTCTACAAT 57.332 33.333 0.00 0.00 0.00 2.71
4793 7477 9.667107 TTTTAGTACTCCCTTCATTCTACAATG 57.333 33.333 0.00 0.00 40.91 2.82
4794 7478 6.875972 AGTACTCCCTTCATTCTACAATGT 57.124 37.500 0.00 0.00 40.47 2.71
4795 7479 7.973048 AGTACTCCCTTCATTCTACAATGTA 57.027 36.000 0.00 0.00 40.47 2.29
4796 7480 8.012957 AGTACTCCCTTCATTCTACAATGTAG 57.987 38.462 13.92 13.92 40.47 2.74
4797 7481 6.875972 ACTCCCTTCATTCTACAATGTAGT 57.124 37.500 18.71 0.00 40.47 2.73
4798 7482 6.644347 ACTCCCTTCATTCTACAATGTAGTG 58.356 40.000 18.71 11.56 40.47 2.74
4799 7483 5.428253 TCCCTTCATTCTACAATGTAGTGC 58.572 41.667 18.71 0.00 40.47 4.40
4800 7484 4.576463 CCCTTCATTCTACAATGTAGTGCC 59.424 45.833 18.71 0.00 40.47 5.01
4801 7485 5.431765 CCTTCATTCTACAATGTAGTGCCT 58.568 41.667 18.71 1.59 40.47 4.75
4802 7486 6.408092 CCCTTCATTCTACAATGTAGTGCCTA 60.408 42.308 18.71 0.00 40.47 3.93
4803 7487 7.220030 CCTTCATTCTACAATGTAGTGCCTAT 58.780 38.462 18.71 5.07 40.47 2.57
4804 7488 8.367911 CCTTCATTCTACAATGTAGTGCCTATA 58.632 37.037 18.71 0.00 40.47 1.31
4805 7489 9.416794 CTTCATTCTACAATGTAGTGCCTATAG 57.583 37.037 18.71 6.77 40.47 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.736636 TGGATATCGACGCAACGAGT 59.263 50.000 8.11 0.44 45.22 4.18
19 20 9.717942 TTTGAAAATCGGAACATTTTTGGATAT 57.282 25.926 0.00 0.00 36.33 1.63
21 22 8.620116 ATTTGAAAATCGGAACATTTTTGGAT 57.380 26.923 0.00 0.00 36.33 3.41
140 149 5.063312 CCAAACTTTCTTGCACGAACAAATT 59.937 36.000 4.93 0.00 0.00 1.82
151 164 6.908870 AATTTGAACTCCAAACTTTCTTGC 57.091 33.333 0.00 0.00 46.41 4.01
265 283 9.279904 CGAACATTTGTTTGAAACTGTAAGTAA 57.720 29.630 9.69 0.00 43.56 2.24
266 284 7.911205 CCGAACATTTGTTTGAAACTGTAAGTA 59.089 33.333 9.69 0.00 43.56 2.24
268 286 6.970043 TCCGAACATTTGTTTGAAACTGTAAG 59.030 34.615 9.69 3.83 40.94 2.34
271 289 5.317733 TCCGAACATTTGTTTGAAACTGT 57.682 34.783 9.69 2.76 40.94 3.55
407 427 5.878116 TGAGACTCCGAACTTCTTTGAAAAA 59.122 36.000 0.00 0.00 0.00 1.94
458 478 5.538118 AGGACCAAAAATTGAAATTCCGAC 58.462 37.500 0.00 0.00 0.00 4.79
520 541 8.542953 GGAAACATGAACAATCTTTGAAAACTC 58.457 33.333 0.00 0.00 0.00 3.01
641 667 2.322081 TGCGGCGCCAAGTCTAAAC 61.322 57.895 30.82 3.91 0.00 2.01
656 682 1.833860 ACGGTTGTTGAAAATGTGCG 58.166 45.000 0.00 0.00 0.00 5.34
703 729 2.555199 CAGAACTTCTATTGAGGCCGG 58.445 52.381 0.00 0.00 0.00 6.13
736 762 5.649782 AGAAAATATGCTCAACCAACCAG 57.350 39.130 0.00 0.00 0.00 4.00
767 793 3.599285 ATCGGTCGGGCGCAAAGAA 62.599 57.895 10.83 0.00 0.00 2.52
769 795 3.564027 GATCGGTCGGGCGCAAAG 61.564 66.667 10.83 0.00 0.00 2.77
795 821 5.876357 ACTGGCCAGACATTTAGAGTAAAA 58.124 37.500 39.19 0.00 0.00 1.52
801 827 2.354704 CGGAACTGGCCAGACATTTAGA 60.355 50.000 39.19 0.00 0.00 2.10
809 835 4.680237 CGTGCGGAACTGGCCAGA 62.680 66.667 39.19 13.13 0.00 3.86
829 855 0.101399 ATAGACGCCTCTTCGCACAG 59.899 55.000 0.00 0.00 0.00 3.66
832 858 1.640428 CAAATAGACGCCTCTTCGCA 58.360 50.000 0.00 0.00 0.00 5.10
863 889 5.306114 ACTATTGGGAGCACCTAATTACC 57.694 43.478 16.45 0.00 43.24 2.85
898 949 2.143876 ATGTACATTTGGGTGGAGCC 57.856 50.000 1.41 0.00 0.00 4.70
899 950 3.356290 AGAATGTACATTTGGGTGGAGC 58.644 45.455 21.63 6.32 0.00 4.70
900 951 4.848357 AGAGAATGTACATTTGGGTGGAG 58.152 43.478 21.63 0.00 0.00 3.86
901 952 4.927267 AGAGAATGTACATTTGGGTGGA 57.073 40.909 21.63 0.00 0.00 4.02
902 953 4.094887 CGAAGAGAATGTACATTTGGGTGG 59.905 45.833 21.63 7.66 0.00 4.61
903 954 4.695455 ACGAAGAGAATGTACATTTGGGTG 59.305 41.667 21.63 12.66 0.00 4.61
904 955 4.695455 CACGAAGAGAATGTACATTTGGGT 59.305 41.667 21.63 11.36 0.00 4.51
907 2004 6.401474 CCAGACACGAAGAGAATGTACATTTG 60.401 42.308 21.63 15.65 0.00 2.32
910 2007 4.382040 CCCAGACACGAAGAGAATGTACAT 60.382 45.833 1.41 1.41 0.00 2.29
912 2009 3.512680 CCCAGACACGAAGAGAATGTAC 58.487 50.000 0.00 0.00 0.00 2.90
962 2059 1.474330 GGCAAAGATCCGAATTGGGT 58.526 50.000 6.37 0.00 38.76 4.51
1041 2138 2.366435 GGGAATCGGGAGGGGACA 60.366 66.667 0.00 0.00 0.00 4.02
1324 2435 0.174845 CTTACCGGGTCGCAGATGAA 59.825 55.000 6.32 0.00 40.67 2.57
1328 2439 1.607178 TTCCTTACCGGGTCGCAGA 60.607 57.895 6.32 0.00 0.00 4.26
1333 2444 2.235402 TGATCTTGTTCCTTACCGGGTC 59.765 50.000 6.32 0.00 0.00 4.46
1390 2501 4.646040 ACTGGCAGCTCAAATGCATTAATA 59.354 37.500 15.89 0.19 45.68 0.98
1487 2601 0.401395 AACAACCCCTCCAGACTGGA 60.401 55.000 22.97 22.97 45.98 3.86
1491 2605 3.713826 TCAATAACAACCCCTCCAGAC 57.286 47.619 0.00 0.00 0.00 3.51
1500 2614 3.119495 GGCCACACTGATCAATAACAACC 60.119 47.826 0.00 0.00 0.00 3.77
1501 2615 3.505680 TGGCCACACTGATCAATAACAAC 59.494 43.478 0.00 0.00 0.00 3.32
1511 2625 2.071778 AACAGTTTGGCCACACTGAT 57.928 45.000 43.83 34.78 42.74 2.90
1657 2777 6.292114 GCCACATAAACTTAACAGTGCAAAAC 60.292 38.462 0.00 0.00 31.60 2.43
1658 2778 5.751028 GCCACATAAACTTAACAGTGCAAAA 59.249 36.000 0.00 0.00 31.60 2.44
1666 2786 8.856153 TGATAAGAAGCCACATAAACTTAACA 57.144 30.769 0.00 0.00 0.00 2.41
1726 2846 3.685756 GCTTAACCACCGTACATAAAGCA 59.314 43.478 0.00 0.00 38.33 3.91
1788 2908 0.772124 AAGAGGGCAAGGGGTTCAGA 60.772 55.000 0.00 0.00 0.00 3.27
1848 2983 5.248477 TCAAAACCTGGCTCTGATACTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
1892 3027 4.894784 TCCTCCGAATGCAAACTATATCC 58.105 43.478 0.00 0.00 0.00 2.59
1909 3054 5.278858 CGACCATAGGTACATAGTTTCCTCC 60.279 48.000 0.00 0.00 35.25 4.30
1912 3057 5.068198 TCACGACCATAGGTACATAGTTTCC 59.932 44.000 0.00 0.00 35.25 3.13
1917 3062 4.395625 TCCTCACGACCATAGGTACATAG 58.604 47.826 0.00 0.00 35.25 2.23
1920 3065 2.812836 TCCTCACGACCATAGGTACA 57.187 50.000 0.00 0.00 35.25 2.90
1931 3076 1.264749 CCTCCCAACCATCCTCACGA 61.265 60.000 0.00 0.00 0.00 4.35
1934 3079 1.264749 CGTCCTCCCAACCATCCTCA 61.265 60.000 0.00 0.00 0.00 3.86
1954 3144 1.140852 CCAATCTGTTATCTCCCCGCA 59.859 52.381 0.00 0.00 0.00 5.69
1956 3146 4.682778 TTACCAATCTGTTATCTCCCCG 57.317 45.455 0.00 0.00 0.00 5.73
1967 3157 3.252215 TGGCAACGTCTTTTACCAATCTG 59.748 43.478 0.00 0.00 42.51 2.90
1974 3164 6.626199 CCAAATAATGGCAACGTCTTTTAC 57.374 37.500 0.00 0.00 43.80 2.01
2027 3217 7.148086 CCCAGTCAGCAATTGTAAATAAAGCTA 60.148 37.037 7.40 0.00 0.00 3.32
2029 3219 5.807011 CCCAGTCAGCAATTGTAAATAAAGC 59.193 40.000 7.40 0.00 0.00 3.51
2038 3228 3.009916 AGAGATTCCCAGTCAGCAATTGT 59.990 43.478 7.40 0.00 0.00 2.71
2041 3231 4.036518 ACTAGAGATTCCCAGTCAGCAAT 58.963 43.478 0.00 0.00 0.00 3.56
2045 3235 7.118496 ACATTAACTAGAGATTCCCAGTCAG 57.882 40.000 0.00 0.00 0.00 3.51
2055 3245 6.710744 CCCGGCATAAAACATTAACTAGAGAT 59.289 38.462 0.00 0.00 0.00 2.75
2065 3255 0.738389 CGAGCCCGGCATAAAACATT 59.262 50.000 13.15 0.00 0.00 2.71
2066 3256 0.107410 TCGAGCCCGGCATAAAACAT 60.107 50.000 13.15 0.00 36.24 2.71
2077 3267 5.759506 AGATAATACAGATATCGAGCCCG 57.240 43.478 0.00 0.00 35.40 6.13
2078 3268 6.754209 CACAAGATAATACAGATATCGAGCCC 59.246 42.308 0.00 0.00 35.40 5.19
2079 3269 7.316640 ACACAAGATAATACAGATATCGAGCC 58.683 38.462 0.00 0.00 35.40 4.70
2128 3348 6.912591 CCAAAGAAAATACAGTCTGACACAAC 59.087 38.462 10.88 0.00 0.00 3.32
2162 3384 1.654220 CACCAGCAGTTTTGACCCG 59.346 57.895 0.00 0.00 0.00 5.28
2192 3414 3.699038 ACACTCTGACCTCTAGAGCATTC 59.301 47.826 14.73 10.21 44.30 2.67
2224 3446 7.996758 AGGAAAATAGGATAAGAGGTGAAGA 57.003 36.000 0.00 0.00 0.00 2.87
2240 3462 9.148879 TGGTTAATTCACCTCAAAAGGAAAATA 57.851 29.630 10.12 0.00 46.67 1.40
2311 3544 4.017126 CAAAATTCCCTTCCCTGACTACC 58.983 47.826 0.00 0.00 0.00 3.18
2317 3550 4.017126 GTCCTACAAAATTCCCTTCCCTG 58.983 47.826 0.00 0.00 0.00 4.45
2318 3551 3.660669 TGTCCTACAAAATTCCCTTCCCT 59.339 43.478 0.00 0.00 0.00 4.20
2329 3562 6.430000 GTCAGCTCCTAAAATGTCCTACAAAA 59.570 38.462 0.00 0.00 0.00 2.44
2336 3569 3.010420 GGTGTCAGCTCCTAAAATGTCC 58.990 50.000 0.00 0.00 0.00 4.02
2341 3678 5.499004 AATACTGGTGTCAGCTCCTAAAA 57.501 39.130 3.30 0.00 44.59 1.52
2347 3684 5.701290 ACACTAAAAATACTGGTGTCAGCTC 59.299 40.000 3.30 0.00 44.59 4.09
2355 3692 8.889717 GCATGTATACACACTAAAAATACTGGT 58.110 33.333 7.96 0.00 37.54 4.00
2366 3714 7.640597 AGACTAACTGCATGTATACACACTA 57.359 36.000 7.96 0.00 37.54 2.74
2404 3753 8.912988 TCATCATGTATGACACTATGACTACAA 58.087 33.333 0.00 0.00 39.77 2.41
2411 3760 8.652810 TTGTCTTCATCATGTATGACACTATG 57.347 34.615 8.75 0.00 44.42 2.23
2413 3762 9.971922 CTATTGTCTTCATCATGTATGACACTA 57.028 33.333 8.75 7.79 44.42 2.74
2414 3763 8.699130 TCTATTGTCTTCATCATGTATGACACT 58.301 33.333 8.75 7.25 44.42 3.55
2415 3764 8.877808 TCTATTGTCTTCATCATGTATGACAC 57.122 34.615 8.75 7.78 44.42 3.67
2416 3765 8.699130 ACTCTATTGTCTTCATCATGTATGACA 58.301 33.333 7.17 8.07 44.42 3.58
2417 3766 9.539825 AACTCTATTGTCTTCATCATGTATGAC 57.460 33.333 7.17 6.14 44.42 3.06
2458 3808 9.454859 TCAACCAAAATTTAGAAAACCAAATGT 57.545 25.926 0.00 0.00 0.00 2.71
2462 3812 8.848474 TGTTCAACCAAAATTTAGAAAACCAA 57.152 26.923 0.00 0.00 0.00 3.67
2463 3813 8.848474 TTGTTCAACCAAAATTTAGAAAACCA 57.152 26.923 0.00 0.00 0.00 3.67
2492 3842 0.546122 ACTGACTTGTGAGCCCAACA 59.454 50.000 0.00 0.00 0.00 3.33
2502 3852 4.512944 CACTAACAATGCTCACTGACTTGT 59.487 41.667 0.00 0.00 0.00 3.16
2574 3924 4.927267 ACATCATTCTGGGGAAAGTGTA 57.073 40.909 0.00 0.00 34.90 2.90
2578 3959 4.202441 CACCTACATCATTCTGGGGAAAG 58.798 47.826 0.00 0.00 34.90 2.62
2613 4178 6.798482 TCATGAAACCATGCATACTCATTTC 58.202 36.000 0.00 6.17 40.83 2.17
2768 4440 3.636764 GGATTGGGCGAAGGTAATGAAAT 59.363 43.478 0.00 0.00 0.00 2.17
2778 4450 4.651778 TCCAAATATAGGATTGGGCGAAG 58.348 43.478 12.35 0.00 44.99 3.79
2836 4913 1.203174 CCTCCATCCCTGGTTTTTGGT 60.203 52.381 0.00 0.00 43.61 3.67
2864 4943 1.229359 CAGGCCCCGTCCTCTACTA 59.771 63.158 0.00 0.00 33.25 1.82
2910 4989 6.985059 GTCACCTTCCAAGAATACCATACTAC 59.015 42.308 0.00 0.00 0.00 2.73
2955 5038 2.106511 CTCTCCCAACACTTCCCTGAAA 59.893 50.000 0.00 0.00 0.00 2.69
2970 5053 4.459330 CAATGAGAAAATCTCCCTCTCCC 58.541 47.826 5.00 0.00 42.73 4.30
2974 5057 4.097589 CCAAGCAATGAGAAAATCTCCCTC 59.902 45.833 5.00 0.00 42.73 4.30
3098 5607 9.130661 CCCTCATATGTTTGGTCATTATAAACA 57.869 33.333 1.90 0.00 45.12 2.83
3101 5610 6.429692 CGCCCTCATATGTTTGGTCATTATAA 59.570 38.462 1.90 0.00 0.00 0.98
3125 5639 4.332819 GGTGGTTCATGTCTTTAGATTCCG 59.667 45.833 0.00 0.00 0.00 4.30
3148 5662 5.041951 ACGTTTACTGCCATTGTGTAATG 57.958 39.130 0.00 0.00 42.66 1.90
3354 5895 0.106268 TGCAAGAAAACCTGGAGCCA 60.106 50.000 0.00 0.00 0.00 4.75
3521 6065 0.457853 TCATCGTCTTTCTTCGGCGG 60.458 55.000 7.21 0.00 0.00 6.13
3522 6066 0.640768 GTCATCGTCTTTCTTCGGCG 59.359 55.000 0.00 0.00 0.00 6.46
3538 6082 2.485302 CCATGGGCGTGATAATCAGTCA 60.485 50.000 2.85 0.00 0.00 3.41
3619 6174 7.812690 TCTCAGCACTTGCAAATATCATAAT 57.187 32.000 0.00 0.00 45.16 1.28
3627 6182 5.706916 CTTGTATTCTCAGCACTTGCAAAT 58.293 37.500 0.00 0.00 45.16 2.32
3631 6186 2.746362 AGCTTGTATTCTCAGCACTTGC 59.254 45.455 0.00 0.00 42.49 4.01
3719 6301 4.464008 ACCAGTGCCATACTATTTGGATG 58.536 43.478 0.00 0.00 37.60 3.51
3729 6311 5.132897 TGAAATTTCAACCAGTGCCATAC 57.867 39.130 18.45 0.00 33.55 2.39
3771 6356 0.391263 CGGGGCACTCTTGGTAAGAC 60.391 60.000 0.00 0.00 33.12 3.01
3811 6409 9.667107 TGAACTAGGAGAAAAACTATGTAATGG 57.333 33.333 0.00 0.00 0.00 3.16
3818 6416 9.232473 GAAACCATGAACTAGGAGAAAAACTAT 57.768 33.333 0.00 0.00 0.00 2.12
3863 6544 1.370900 CAACCGCAAAGAGCTGCAC 60.371 57.895 1.02 0.00 42.77 4.57
3906 6587 3.357079 CACAAGCCGGTGCACCTC 61.357 66.667 32.28 22.98 41.13 3.85
3917 6598 2.629656 ATTGTCAGCCCGCACAAGC 61.630 57.895 0.13 0.00 35.99 4.01
3918 6599 1.210931 CATTGTCAGCCCGCACAAG 59.789 57.895 0.13 0.00 35.99 3.16
3919 6600 1.228094 TCATTGTCAGCCCGCACAA 60.228 52.632 0.00 0.00 36.94 3.33
3920 6601 1.965930 GTCATTGTCAGCCCGCACA 60.966 57.895 0.00 0.00 0.00 4.57
3921 6602 2.870372 GTCATTGTCAGCCCGCAC 59.130 61.111 0.00 0.00 0.00 5.34
3922 6603 2.741985 CGTCATTGTCAGCCCGCA 60.742 61.111 0.00 0.00 0.00 5.69
3923 6604 2.434185 TCGTCATTGTCAGCCCGC 60.434 61.111 0.00 0.00 0.00 6.13
3924 6605 2.444624 CGTCGTCATTGTCAGCCCG 61.445 63.158 0.00 0.00 0.00 6.13
3925 6606 2.100631 CCGTCGTCATTGTCAGCCC 61.101 63.158 0.00 0.00 0.00 5.19
3926 6607 1.374252 ACCGTCGTCATTGTCAGCC 60.374 57.895 0.00 0.00 0.00 4.85
3927 6608 1.781555 CACCGTCGTCATTGTCAGC 59.218 57.895 0.00 0.00 0.00 4.26
3928 6609 0.667487 AGCACCGTCGTCATTGTCAG 60.667 55.000 0.00 0.00 0.00 3.51
3929 6610 0.249699 AAGCACCGTCGTCATTGTCA 60.250 50.000 0.00 0.00 0.00 3.58
3930 6611 0.865769 AAAGCACCGTCGTCATTGTC 59.134 50.000 0.00 0.00 0.00 3.18
3931 6612 0.586319 CAAAGCACCGTCGTCATTGT 59.414 50.000 0.00 0.00 0.00 2.71
3932 6613 0.865111 TCAAAGCACCGTCGTCATTG 59.135 50.000 0.00 0.00 0.00 2.82
3933 6614 1.148310 CTCAAAGCACCGTCGTCATT 58.852 50.000 0.00 0.00 0.00 2.57
3934 6615 0.033504 ACTCAAAGCACCGTCGTCAT 59.966 50.000 0.00 0.00 0.00 3.06
3935 6616 0.669619 TACTCAAAGCACCGTCGTCA 59.330 50.000 0.00 0.00 0.00 4.35
3936 6617 1.337821 CTACTCAAAGCACCGTCGTC 58.662 55.000 0.00 0.00 0.00 4.20
3937 6618 0.038526 CCTACTCAAAGCACCGTCGT 60.039 55.000 0.00 0.00 0.00 4.34
3938 6619 0.736325 CCCTACTCAAAGCACCGTCG 60.736 60.000 0.00 0.00 0.00 5.12
3939 6620 0.391263 CCCCTACTCAAAGCACCGTC 60.391 60.000 0.00 0.00 0.00 4.79
3940 6621 1.125711 ACCCCTACTCAAAGCACCGT 61.126 55.000 0.00 0.00 0.00 4.83
3941 6622 0.673644 CACCCCTACTCAAAGCACCG 60.674 60.000 0.00 0.00 0.00 4.94
3942 6623 0.322546 CCACCCCTACTCAAAGCACC 60.323 60.000 0.00 0.00 0.00 5.01
3943 6624 0.690762 TCCACCCCTACTCAAAGCAC 59.309 55.000 0.00 0.00 0.00 4.40
3944 6625 1.440618 TTCCACCCCTACTCAAAGCA 58.559 50.000 0.00 0.00 0.00 3.91
3945 6626 2.224793 ACTTTCCACCCCTACTCAAAGC 60.225 50.000 0.00 0.00 0.00 3.51
3946 6627 3.412386 CACTTTCCACCCCTACTCAAAG 58.588 50.000 0.00 0.00 0.00 2.77
3947 6628 2.107552 CCACTTTCCACCCCTACTCAAA 59.892 50.000 0.00 0.00 0.00 2.69
3973 6654 9.342308 ACAAATGTCAGATATTTCGGATTATGT 57.658 29.630 2.24 0.00 0.00 2.29
4018 6699 4.917998 CGGATACAGATATTTCAGACACGG 59.082 45.833 0.00 0.00 0.00 4.94
4022 6703 5.629849 CGGTTCGGATACAGATATTTCAGAC 59.370 44.000 0.00 0.00 0.00 3.51
4025 6706 5.777850 TCGGTTCGGATACAGATATTTCA 57.222 39.130 0.00 0.00 0.00 2.69
4030 6711 4.585581 TCCATTTCGGTTCGGATACAGATA 59.414 41.667 0.00 0.00 35.57 1.98
4036 6717 4.336993 CCATTTTCCATTTCGGTTCGGATA 59.663 41.667 0.00 0.00 35.57 2.59
4046 6727 9.981114 ATACGGATAATTTCCATTTTCCATTTC 57.019 29.630 5.59 0.00 45.78 2.17
4109 6791 6.575162 ATTTGTGTCAAAATGTCCTACTCC 57.425 37.500 0.00 0.00 0.00 3.85
4110 6792 8.184192 CCATATTTGTGTCAAAATGTCCTACTC 58.816 37.037 0.00 0.00 32.16 2.59
4111 6793 7.888021 TCCATATTTGTGTCAAAATGTCCTACT 59.112 33.333 0.00 0.00 32.16 2.57
4112 6794 8.050778 TCCATATTTGTGTCAAAATGTCCTAC 57.949 34.615 0.00 0.00 32.16 3.18
4113 6795 8.821686 ATCCATATTTGTGTCAAAATGTCCTA 57.178 30.769 0.00 0.00 32.16 2.94
4176 6858 6.090763 GGGCAAGAATTTTGAAAATTACCTCG 59.909 38.462 15.15 1.57 0.00 4.63
4197 6879 6.385176 TGTTGGATAATTGAAATATTGGGGCA 59.615 34.615 0.00 0.00 0.00 5.36
4437 7120 8.051901 TCGAATACGGATACATATCAGATGTT 57.948 34.615 6.11 0.00 40.21 2.71
4438 7121 7.625828 TCGAATACGGATACATATCAGATGT 57.374 36.000 6.11 0.00 40.21 3.06
4441 7124 9.999009 GTTAATCGAATACGGATACATATCAGA 57.001 33.333 6.11 0.00 40.21 3.27
4442 7125 9.783256 TGTTAATCGAATACGGATACATATCAG 57.217 33.333 0.00 0.00 40.21 2.90
4443 7126 9.563898 GTGTTAATCGAATACGGATACATATCA 57.436 33.333 0.00 0.00 40.21 2.15
4444 7127 9.017669 GGTGTTAATCGAATACGGATACATATC 57.982 37.037 0.00 0.00 40.21 1.63
4445 7128 7.977853 GGGTGTTAATCGAATACGGATACATAT 59.022 37.037 0.00 0.00 40.21 1.78
4446 7129 7.315142 GGGTGTTAATCGAATACGGATACATA 58.685 38.462 0.00 0.00 40.21 2.29
4447 7130 6.161381 GGGTGTTAATCGAATACGGATACAT 58.839 40.000 0.00 0.00 40.21 2.29
4448 7131 5.531634 GGGTGTTAATCGAATACGGATACA 58.468 41.667 0.00 0.00 40.21 2.29
4463 7146 1.448893 GATGCGGCTCGGGTGTTAA 60.449 57.895 0.00 0.00 0.00 2.01
4469 7152 3.916392 GATACGGATGCGGCTCGGG 62.916 68.421 12.44 0.00 0.00 5.14
4529 7213 8.637986 AGTGCTTTTACCACTTTCATTTTCATA 58.362 29.630 0.00 0.00 40.45 2.15
4530 7214 7.500141 AGTGCTTTTACCACTTTCATTTTCAT 58.500 30.769 0.00 0.00 40.45 2.57
4549 7233 2.431057 AGAAACGGATCGGATAGTGCTT 59.569 45.455 7.35 0.00 0.00 3.91
4570 7254 3.031873 ACGGGGGCTCTAGGGGTA 61.032 66.667 0.00 0.00 0.00 3.69
4579 7263 0.616891 AGAAATTAACGACGGGGGCT 59.383 50.000 0.00 0.00 0.00 5.19
4580 7264 1.935873 GTAGAAATTAACGACGGGGGC 59.064 52.381 0.00 0.00 0.00 5.80
4581 7265 3.531934 AGTAGAAATTAACGACGGGGG 57.468 47.619 0.00 0.00 0.00 5.40
4582 7266 8.302438 AGATAATAGTAGAAATTAACGACGGGG 58.698 37.037 0.00 0.00 0.00 5.73
4583 7267 9.339492 GAGATAATAGTAGAAATTAACGACGGG 57.661 37.037 0.00 0.00 0.00 5.28
4584 7268 9.339492 GGAGATAATAGTAGAAATTAACGACGG 57.661 37.037 0.00 0.00 0.00 4.79
4585 7269 9.048922 CGGAGATAATAGTAGAAATTAACGACG 57.951 37.037 0.00 0.00 0.00 5.12
4586 7270 9.890352 ACGGAGATAATAGTAGAAATTAACGAC 57.110 33.333 0.00 0.00 0.00 4.34
4655 7339 9.471084 CCGTTCCAAATTACTTGTCTTAAATTT 57.529 29.630 0.00 0.00 33.07 1.82
4656 7340 8.852135 TCCGTTCCAAATTACTTGTCTTAAATT 58.148 29.630 0.00 0.00 32.65 1.82
4657 7341 8.398878 TCCGTTCCAAATTACTTGTCTTAAAT 57.601 30.769 0.00 0.00 32.65 1.40
4658 7342 7.716123 TCTCCGTTCCAAATTACTTGTCTTAAA 59.284 33.333 0.00 0.00 32.65 1.52
4659 7343 7.218614 TCTCCGTTCCAAATTACTTGTCTTAA 58.781 34.615 0.00 0.00 32.65 1.85
4660 7344 6.761312 TCTCCGTTCCAAATTACTTGTCTTA 58.239 36.000 0.00 0.00 32.65 2.10
4661 7345 5.617252 TCTCCGTTCCAAATTACTTGTCTT 58.383 37.500 0.00 0.00 32.65 3.01
4662 7346 5.223449 TCTCCGTTCCAAATTACTTGTCT 57.777 39.130 0.00 0.00 32.65 3.41
4663 7347 5.934935 TTCTCCGTTCCAAATTACTTGTC 57.065 39.130 0.00 0.00 32.65 3.18
4664 7348 5.240844 CCTTTCTCCGTTCCAAATTACTTGT 59.759 40.000 0.00 0.00 32.65 3.16
4665 7349 5.472137 TCCTTTCTCCGTTCCAAATTACTTG 59.528 40.000 0.00 0.00 34.52 3.16
4666 7350 5.627135 TCCTTTCTCCGTTCCAAATTACTT 58.373 37.500 0.00 0.00 0.00 2.24
4667 7351 5.237236 TCCTTTCTCCGTTCCAAATTACT 57.763 39.130 0.00 0.00 0.00 2.24
4668 7352 5.220605 CGATCCTTTCTCCGTTCCAAATTAC 60.221 44.000 0.00 0.00 0.00 1.89
4669 7353 4.873827 CGATCCTTTCTCCGTTCCAAATTA 59.126 41.667 0.00 0.00 0.00 1.40
4670 7354 3.689649 CGATCCTTTCTCCGTTCCAAATT 59.310 43.478 0.00 0.00 0.00 1.82
4671 7355 3.055385 TCGATCCTTTCTCCGTTCCAAAT 60.055 43.478 0.00 0.00 0.00 2.32
4672 7356 2.300723 TCGATCCTTTCTCCGTTCCAAA 59.699 45.455 0.00 0.00 0.00 3.28
4673 7357 1.897133 TCGATCCTTTCTCCGTTCCAA 59.103 47.619 0.00 0.00 0.00 3.53
4674 7358 1.203994 GTCGATCCTTTCTCCGTTCCA 59.796 52.381 0.00 0.00 0.00 3.53
4675 7359 1.798079 CGTCGATCCTTTCTCCGTTCC 60.798 57.143 0.00 0.00 0.00 3.62
4676 7360 1.546834 CGTCGATCCTTTCTCCGTTC 58.453 55.000 0.00 0.00 0.00 3.95
4677 7361 0.172803 CCGTCGATCCTTTCTCCGTT 59.827 55.000 0.00 0.00 0.00 4.44
4678 7362 1.807886 CCGTCGATCCTTTCTCCGT 59.192 57.895 0.00 0.00 0.00 4.69
4679 7363 1.589196 GCCGTCGATCCTTTCTCCG 60.589 63.158 0.00 0.00 0.00 4.63
4680 7364 1.589196 CGCCGTCGATCCTTTCTCC 60.589 63.158 0.00 0.00 38.10 3.71
4681 7365 2.231618 GCGCCGTCGATCCTTTCTC 61.232 63.158 0.00 0.00 38.10 2.87
4682 7366 2.202756 GCGCCGTCGATCCTTTCT 60.203 61.111 0.00 0.00 38.10 2.52
4683 7367 1.810030 AAGCGCCGTCGATCCTTTC 60.810 57.895 2.29 0.00 38.10 2.62
4684 7368 2.100631 CAAGCGCCGTCGATCCTTT 61.101 57.895 2.29 0.00 38.10 3.11
4685 7369 2.509336 CAAGCGCCGTCGATCCTT 60.509 61.111 2.29 0.00 38.10 3.36
4686 7370 3.417275 CTCAAGCGCCGTCGATCCT 62.417 63.158 2.29 0.00 38.10 3.24
4687 7371 2.956964 CTCAAGCGCCGTCGATCC 60.957 66.667 2.29 0.00 38.10 3.36
4688 7372 3.621394 GCTCAAGCGCCGTCGATC 61.621 66.667 2.29 0.00 38.10 3.69
4697 7381 1.039233 ATTCCCAATGGGCTCAAGCG 61.039 55.000 14.88 0.00 43.94 4.68
4698 7382 0.462789 CATTCCCAATGGGCTCAAGC 59.537 55.000 14.88 0.00 43.94 4.01
4707 7391 6.040209 TGAGATTGAAAACCATTCCCAATG 57.960 37.500 0.00 0.00 38.63 2.82
4708 7392 6.214005 ACATGAGATTGAAAACCATTCCCAAT 59.786 34.615 0.00 0.00 0.00 3.16
4709 7393 5.543405 ACATGAGATTGAAAACCATTCCCAA 59.457 36.000 0.00 0.00 0.00 4.12
4710 7394 5.085920 ACATGAGATTGAAAACCATTCCCA 58.914 37.500 0.00 0.00 0.00 4.37
4711 7395 5.665916 ACATGAGATTGAAAACCATTCCC 57.334 39.130 0.00 0.00 0.00 3.97
4712 7396 5.349543 GCAACATGAGATTGAAAACCATTCC 59.650 40.000 0.00 0.00 0.00 3.01
4713 7397 6.090358 CAGCAACATGAGATTGAAAACCATTC 59.910 38.462 0.00 0.00 0.00 2.67
4714 7398 5.929992 CAGCAACATGAGATTGAAAACCATT 59.070 36.000 0.00 0.00 0.00 3.16
4715 7399 5.011329 ACAGCAACATGAGATTGAAAACCAT 59.989 36.000 0.00 0.00 0.00 3.55
4716 7400 4.341806 ACAGCAACATGAGATTGAAAACCA 59.658 37.500 0.00 0.00 0.00 3.67
4717 7401 4.874970 ACAGCAACATGAGATTGAAAACC 58.125 39.130 0.00 0.00 0.00 3.27
4718 7402 5.522456 TGACAGCAACATGAGATTGAAAAC 58.478 37.500 0.00 0.00 0.00 2.43
4719 7403 5.771153 TGACAGCAACATGAGATTGAAAA 57.229 34.783 0.00 0.00 0.00 2.29
4720 7404 5.771153 TTGACAGCAACATGAGATTGAAA 57.229 34.783 0.00 0.00 0.00 2.69
4721 7405 5.765176 CTTTGACAGCAACATGAGATTGAA 58.235 37.500 0.00 0.00 32.79 2.69
4722 7406 5.366829 CTTTGACAGCAACATGAGATTGA 57.633 39.130 0.00 0.00 32.79 2.57
4747 7431 6.715347 AAAACAGGCATGTACTCTCTTTTT 57.285 33.333 3.57 0.00 39.29 1.94
4748 7432 6.998673 ACTAAAACAGGCATGTACTCTCTTTT 59.001 34.615 3.57 2.21 39.29 2.27
4749 7433 6.534634 ACTAAAACAGGCATGTACTCTCTTT 58.465 36.000 3.57 2.99 39.29 2.52
4750 7434 6.115448 ACTAAAACAGGCATGTACTCTCTT 57.885 37.500 3.57 0.00 39.29 2.85
4751 7435 5.746990 ACTAAAACAGGCATGTACTCTCT 57.253 39.130 3.57 0.00 39.29 3.10
4752 7436 6.631962 AGTACTAAAACAGGCATGTACTCTC 58.368 40.000 3.57 0.00 39.29 3.20
4753 7437 6.607004 AGTACTAAAACAGGCATGTACTCT 57.393 37.500 3.57 0.00 39.29 3.24
4754 7438 6.889019 GAGTACTAAAACAGGCATGTACTC 57.111 41.667 3.57 9.27 44.82 2.59
4755 7439 5.338137 GGGAGTACTAAAACAGGCATGTACT 60.338 44.000 3.57 2.78 41.87 2.73
4756 7440 4.874396 GGGAGTACTAAAACAGGCATGTAC 59.126 45.833 3.57 0.00 39.29 2.90
4757 7441 4.781087 AGGGAGTACTAAAACAGGCATGTA 59.219 41.667 3.57 0.00 39.29 2.29
4758 7442 3.587506 AGGGAGTACTAAAACAGGCATGT 59.412 43.478 0.00 0.00 43.15 3.21
4759 7443 4.222124 AGGGAGTACTAAAACAGGCATG 57.778 45.455 0.00 0.00 0.00 4.06
4760 7444 4.288626 TGAAGGGAGTACTAAAACAGGCAT 59.711 41.667 0.00 0.00 0.00 4.40
4761 7445 3.649023 TGAAGGGAGTACTAAAACAGGCA 59.351 43.478 0.00 0.00 0.00 4.75
4762 7446 4.281898 TGAAGGGAGTACTAAAACAGGC 57.718 45.455 0.00 0.00 0.00 4.85
4763 7447 6.712276 AGAATGAAGGGAGTACTAAAACAGG 58.288 40.000 0.00 0.00 0.00 4.00
4764 7448 8.311836 TGTAGAATGAAGGGAGTACTAAAACAG 58.688 37.037 0.00 0.00 0.00 3.16
4765 7449 8.197592 TGTAGAATGAAGGGAGTACTAAAACA 57.802 34.615 0.00 0.00 0.00 2.83
4766 7450 9.668497 ATTGTAGAATGAAGGGAGTACTAAAAC 57.332 33.333 0.00 0.00 0.00 2.43
4767 7451 9.667107 CATTGTAGAATGAAGGGAGTACTAAAA 57.333 33.333 6.76 0.00 41.49 1.52
4768 7452 8.822805 ACATTGTAGAATGAAGGGAGTACTAAA 58.177 33.333 18.70 0.00 41.49 1.85
4769 7453 8.375493 ACATTGTAGAATGAAGGGAGTACTAA 57.625 34.615 18.70 0.00 41.49 2.24
4770 7454 7.973048 ACATTGTAGAATGAAGGGAGTACTA 57.027 36.000 18.70 0.00 41.49 1.82
4771 7455 6.875972 ACATTGTAGAATGAAGGGAGTACT 57.124 37.500 18.70 0.00 41.49 2.73
4772 7456 7.707035 CACTACATTGTAGAATGAAGGGAGTAC 59.293 40.741 26.58 0.00 41.49 2.73
4773 7457 7.632898 GCACTACATTGTAGAATGAAGGGAGTA 60.633 40.741 26.58 0.00 41.49 2.59
4774 7458 6.644347 CACTACATTGTAGAATGAAGGGAGT 58.356 40.000 26.58 10.13 41.49 3.85
4775 7459 5.525378 GCACTACATTGTAGAATGAAGGGAG 59.475 44.000 26.58 9.61 41.49 4.30
4776 7460 5.428253 GCACTACATTGTAGAATGAAGGGA 58.572 41.667 26.58 0.00 41.49 4.20
4777 7461 4.576463 GGCACTACATTGTAGAATGAAGGG 59.424 45.833 26.58 4.76 41.49 3.95
4778 7462 5.431765 AGGCACTACATTGTAGAATGAAGG 58.568 41.667 26.58 10.11 41.96 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.