Multiple sequence alignment - TraesCS5A01G011600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G011600 chr5A 100.000 4461 0 0 1 4461 7568533 7572993 0.000000e+00 8239.0
1 TraesCS5A01G011600 chr5A 94.042 621 29 5 3848 4461 672453780 672453161 0.000000e+00 935.0
2 TraesCS5A01G011600 chr5A 92.255 439 27 5 4029 4461 30061607 30062044 2.280000e-172 616.0
3 TraesCS5A01G011600 chr5A 92.116 241 10 1 3234 3465 7584670 7584910 9.250000e-87 331.0
4 TraesCS5A01G011600 chr5B 94.446 2971 121 14 819 3751 9356085 9359049 0.000000e+00 4532.0
5 TraesCS5A01G011600 chr5B 90.099 707 54 9 130 822 9350182 9350886 0.000000e+00 904.0
6 TraesCS5A01G011600 chr5B 86.311 694 58 14 3774 4461 617666668 617667330 0.000000e+00 721.0
7 TraesCS5A01G011600 chr5B 90.287 453 29 7 3774 4223 520103551 520103991 2.990000e-161 579.0
8 TraesCS5A01G011600 chr5B 91.538 130 5 1 3234 3357 9367789 9367918 1.650000e-39 174.0
9 TraesCS5A01G011600 chr5B 95.238 84 4 0 4 87 9345093 9345176 2.800000e-27 134.0
10 TraesCS5A01G011600 chr5D 94.993 1438 55 5 2318 3740 9403260 9401825 0.000000e+00 2241.0
11 TraesCS5A01G011600 chr5D 92.253 1407 103 2 783 2183 9404917 9403511 0.000000e+00 1989.0
12 TraesCS5A01G011600 chr5D 84.936 1175 147 20 998 2157 556877988 556876829 0.000000e+00 1162.0
13 TraesCS5A01G011600 chr5D 83.333 1164 138 28 2321 3459 556876271 556875139 0.000000e+00 1024.0
14 TraesCS5A01G011600 chr5D 87.063 572 46 14 3899 4461 462039755 462039203 4.900000e-174 621.0
15 TraesCS5A01G011600 chr5D 86.179 369 27 13 3234 3592 9449604 9449958 1.170000e-100 377.0
16 TraesCS5A01G011600 chr5D 93.671 158 8 1 3591 3748 9450231 9450386 7.460000e-58 235.0
17 TraesCS5A01G011600 chr5D 82.576 264 41 4 520 778 424109941 424109678 1.250000e-55 228.0
18 TraesCS5A01G011600 chr5D 94.444 90 5 0 3662 3751 9409211 9409300 6.020000e-29 139.0
19 TraesCS5A01G011600 chr5D 86.585 82 11 0 430 511 254131915 254131834 1.710000e-14 91.6
20 TraesCS5A01G011600 chrUn 84.833 1167 150 21 1000 2157 48204651 48205799 0.000000e+00 1149.0
21 TraesCS5A01G011600 chrUn 83.290 1167 142 26 2321 3459 48206280 48207421 0.000000e+00 1026.0
22 TraesCS5A01G011600 chrUn 84.127 189 25 1 521 704 71739379 71739191 1.280000e-40 178.0
23 TraesCS5A01G011600 chr4A 84.747 1167 151 21 1000 2157 605377040 605375892 0.000000e+00 1144.0
24 TraesCS5A01G011600 chr4A 98.435 639 8 2 3823 4461 39580927 39581563 0.000000e+00 1123.0
25 TraesCS5A01G011600 chr4A 83.290 1167 142 26 2321 3459 605375411 605374270 0.000000e+00 1026.0
26 TraesCS5A01G011600 chr4A 78.657 1162 194 33 1011 2151 738784341 738783213 0.000000e+00 723.0
27 TraesCS5A01G011600 chr6D 89.883 682 48 11 3787 4461 110724922 110725589 0.000000e+00 857.0
28 TraesCS5A01G011600 chr6D 82.129 263 41 2 521 778 460392052 460392313 2.090000e-53 220.0
29 TraesCS5A01G011600 chr7D 79.002 1162 189 32 1011 2152 4813644 4812518 0.000000e+00 743.0
30 TraesCS5A01G011600 chr7D 79.087 263 50 3 521 778 461086708 461086446 4.590000e-40 176.0
31 TraesCS5A01G011600 chr3D 86.455 694 56 14 3774 4461 96390318 96389657 0.000000e+00 726.0
32 TraesCS5A01G011600 chr3D 85.246 244 31 1 545 783 577507766 577508009 3.450000e-61 246.0
33 TraesCS5A01G011600 chr3D 75.654 382 66 14 1583 1961 600173281 600173638 9.930000e-37 165.0
34 TraesCS5A01G011600 chr3D 84.034 119 18 1 544 662 37983214 37983097 3.650000e-21 113.0
35 TraesCS5A01G011600 chr3D 86.585 82 11 0 430 511 422787699 422787618 1.710000e-14 91.6
36 TraesCS5A01G011600 chr7A 78.590 1163 193 36 1011 2151 4742503 4743631 0.000000e+00 717.0
37 TraesCS5A01G011600 chr7A 74.812 798 134 44 2516 3296 4744068 4744815 9.380000e-77 298.0
38 TraesCS5A01G011600 chr2B 85.610 688 60 17 3780 4461 686045230 686044576 0.000000e+00 686.0
39 TraesCS5A01G011600 chr1B 85.088 684 64 13 3784 4461 72016758 72017409 0.000000e+00 664.0
40 TraesCS5A01G011600 chr1B 86.047 86 11 1 425 510 532397493 532397409 1.710000e-14 91.6
41 TraesCS5A01G011600 chr6B 92.274 453 21 6 3774 4223 652381555 652381996 8.140000e-177 630.0
42 TraesCS5A01G011600 chr3A 83.811 698 57 28 3770 4461 682274584 682273937 2.950000e-171 612.0
43 TraesCS5A01G011600 chr3B 90.949 453 26 7 3774 4223 741495958 741496398 2.970000e-166 595.0
44 TraesCS5A01G011600 chr3B 85.714 91 13 0 421 511 151709028 151709118 3.670000e-16 97.1
45 TraesCS5A01G011600 chr2A 83.333 258 38 1 526 778 35898863 35899120 2.680000e-57 233.0
46 TraesCS5A01G011600 chr2A 86.585 82 11 0 430 511 508475315 508475234 1.710000e-14 91.6
47 TraesCS5A01G011600 chr2A 86.585 82 10 1 430 511 139553757 139553677 6.150000e-14 89.8
48 TraesCS5A01G011600 chr2A 82.828 99 15 2 413 511 466335882 466335978 2.210000e-13 87.9
49 TraesCS5A01G011600 chr2D 83.429 175 24 3 565 734 491496771 491496945 1.660000e-34 158.0
50 TraesCS5A01G011600 chr1D 86.813 91 12 0 421 511 85127093 85127183 7.890000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G011600 chr5A 7568533 7572993 4460 False 8239.0 8239 100.0000 1 4461 1 chr5A.!!$F1 4460
1 TraesCS5A01G011600 chr5A 672453161 672453780 619 True 935.0 935 94.0420 3848 4461 1 chr5A.!!$R1 613
2 TraesCS5A01G011600 chr5B 9356085 9359049 2964 False 4532.0 4532 94.4460 819 3751 1 chr5B.!!$F3 2932
3 TraesCS5A01G011600 chr5B 9350182 9350886 704 False 904.0 904 90.0990 130 822 1 chr5B.!!$F2 692
4 TraesCS5A01G011600 chr5B 617666668 617667330 662 False 721.0 721 86.3110 3774 4461 1 chr5B.!!$F6 687
5 TraesCS5A01G011600 chr5D 9401825 9404917 3092 True 2115.0 2241 93.6230 783 3740 2 chr5D.!!$R4 2957
6 TraesCS5A01G011600 chr5D 556875139 556877988 2849 True 1093.0 1162 84.1345 998 3459 2 chr5D.!!$R5 2461
7 TraesCS5A01G011600 chr5D 462039203 462039755 552 True 621.0 621 87.0630 3899 4461 1 chr5D.!!$R3 562
8 TraesCS5A01G011600 chr5D 9449604 9450386 782 False 306.0 377 89.9250 3234 3748 2 chr5D.!!$F2 514
9 TraesCS5A01G011600 chrUn 48204651 48207421 2770 False 1087.5 1149 84.0615 1000 3459 2 chrUn.!!$F1 2459
10 TraesCS5A01G011600 chr4A 39580927 39581563 636 False 1123.0 1123 98.4350 3823 4461 1 chr4A.!!$F1 638
11 TraesCS5A01G011600 chr4A 605374270 605377040 2770 True 1085.0 1144 84.0185 1000 3459 2 chr4A.!!$R2 2459
12 TraesCS5A01G011600 chr4A 738783213 738784341 1128 True 723.0 723 78.6570 1011 2151 1 chr4A.!!$R1 1140
13 TraesCS5A01G011600 chr6D 110724922 110725589 667 False 857.0 857 89.8830 3787 4461 1 chr6D.!!$F1 674
14 TraesCS5A01G011600 chr7D 4812518 4813644 1126 True 743.0 743 79.0020 1011 2152 1 chr7D.!!$R1 1141
15 TraesCS5A01G011600 chr3D 96389657 96390318 661 True 726.0 726 86.4550 3774 4461 1 chr3D.!!$R2 687
16 TraesCS5A01G011600 chr7A 4742503 4744815 2312 False 507.5 717 76.7010 1011 3296 2 chr7A.!!$F1 2285
17 TraesCS5A01G011600 chr2B 686044576 686045230 654 True 686.0 686 85.6100 3780 4461 1 chr2B.!!$R1 681
18 TraesCS5A01G011600 chr1B 72016758 72017409 651 False 664.0 664 85.0880 3784 4461 1 chr1B.!!$F1 677
19 TraesCS5A01G011600 chr3A 682273937 682274584 647 True 612.0 612 83.8110 3770 4461 1 chr3A.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.036164 AAAGGTGCTACCATGACGCA 59.964 50.000 0.00 0.00 41.95 5.24 F
97 98 0.313672 GTTGGCCAAATTCTGCACGA 59.686 50.000 22.47 0.00 0.00 4.35 F
1389 1413 0.102481 GTGACATCTATGGCGTCGGT 59.898 55.000 0.00 0.00 39.17 4.69 F
2022 2052 1.134401 CAGTACCGGCACATCCAGATT 60.134 52.381 7.75 0.00 34.01 2.40 F
2038 2068 1.286354 GATTTTCGACACGGCCACGA 61.286 55.000 2.24 5.33 44.60 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1395 0.102300 CACCGACGCCATAGATGTCA 59.898 55.000 0.00 0.00 32.91 3.58 R
1395 1422 1.302752 GCTGTCCTCCATGCACACA 60.303 57.895 0.00 0.00 0.00 3.72 R
2239 2785 0.107703 ATATCATATGTGCCCGGCCG 60.108 55.000 21.04 21.04 0.00 6.13 R
3076 3962 1.302431 CATGTCGGGGCTGAACACA 60.302 57.895 0.00 0.00 0.00 3.72 R
3610 4795 1.655484 CAGGTAGTTCGATGCATGCA 58.345 50.000 25.04 25.04 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.703001 ATCGAATTCATATCCGGCCTT 57.297 42.857 6.22 0.00 0.00 4.35
21 22 2.766313 TCGAATTCATATCCGGCCTTG 58.234 47.619 6.22 0.00 0.00 3.61
22 23 1.197721 CGAATTCATATCCGGCCTTGC 59.802 52.381 6.22 0.00 0.00 4.01
23 24 1.197721 GAATTCATATCCGGCCTTGCG 59.802 52.381 0.00 0.00 0.00 4.85
24 25 0.108585 ATTCATATCCGGCCTTGCGT 59.891 50.000 0.00 0.00 0.00 5.24
25 26 0.531974 TTCATATCCGGCCTTGCGTC 60.532 55.000 0.00 0.00 0.00 5.19
26 27 1.227527 CATATCCGGCCTTGCGTCA 60.228 57.895 0.00 0.00 0.00 4.35
27 28 1.069765 ATATCCGGCCTTGCGTCAG 59.930 57.895 0.00 0.00 0.00 3.51
28 29 2.383245 ATATCCGGCCTTGCGTCAGG 62.383 60.000 0.00 0.00 36.95 3.86
32 33 4.329545 GGCCTTGCGTCAGGTGGA 62.330 66.667 0.00 0.00 36.15 4.02
33 34 2.045926 GCCTTGCGTCAGGTGGAT 60.046 61.111 4.21 0.00 36.15 3.41
34 35 2.109126 GCCTTGCGTCAGGTGGATC 61.109 63.158 4.21 0.00 36.15 3.36
35 36 1.296392 CCTTGCGTCAGGTGGATCA 59.704 57.895 0.00 0.00 0.00 2.92
36 37 0.321564 CCTTGCGTCAGGTGGATCAA 60.322 55.000 0.00 0.00 0.00 2.57
37 38 1.522668 CTTGCGTCAGGTGGATCAAA 58.477 50.000 0.00 0.00 0.00 2.69
38 39 1.197721 CTTGCGTCAGGTGGATCAAAC 59.802 52.381 0.00 0.00 0.00 2.93
39 40 0.605319 TGCGTCAGGTGGATCAAACC 60.605 55.000 8.44 8.44 38.03 3.27
41 42 1.066430 GCGTCAGGTGGATCAAACCTA 60.066 52.381 16.64 5.76 46.58 3.08
42 43 2.614481 GCGTCAGGTGGATCAAACCTAA 60.614 50.000 16.64 2.67 46.58 2.69
43 44 3.262420 CGTCAGGTGGATCAAACCTAAG 58.738 50.000 16.64 8.00 46.58 2.18
44 45 3.010420 GTCAGGTGGATCAAACCTAAGC 58.990 50.000 16.64 8.22 46.58 3.09
45 46 2.009774 CAGGTGGATCAAACCTAAGCG 58.990 52.381 16.64 3.94 46.58 4.68
46 47 1.065418 AGGTGGATCAAACCTAAGCGG 60.065 52.381 15.77 0.00 46.44 5.52
47 48 0.733150 GTGGATCAAACCTAAGCGGC 59.267 55.000 0.00 0.00 35.61 6.53
48 49 0.393808 TGGATCAAACCTAAGCGGCC 60.394 55.000 0.00 0.00 35.61 6.13
49 50 1.101635 GGATCAAACCTAAGCGGCCC 61.102 60.000 0.00 0.00 35.61 5.80
50 51 0.393808 GATCAAACCTAAGCGGCCCA 60.394 55.000 0.00 0.00 35.61 5.36
51 52 0.039035 ATCAAACCTAAGCGGCCCAA 59.961 50.000 0.00 0.00 35.61 4.12
52 53 0.178987 TCAAACCTAAGCGGCCCAAA 60.179 50.000 0.00 0.00 35.61 3.28
53 54 0.676736 CAAACCTAAGCGGCCCAAAA 59.323 50.000 0.00 0.00 35.61 2.44
54 55 0.966179 AAACCTAAGCGGCCCAAAAG 59.034 50.000 0.00 0.00 35.61 2.27
55 56 0.898326 AACCTAAGCGGCCCAAAAGG 60.898 55.000 0.00 1.79 35.61 3.11
56 57 1.304134 CCTAAGCGGCCCAAAAGGT 60.304 57.895 0.00 0.00 38.26 3.50
57 58 1.595093 CCTAAGCGGCCCAAAAGGTG 61.595 60.000 0.00 0.00 38.26 4.00
58 59 2.212900 CTAAGCGGCCCAAAAGGTGC 62.213 60.000 0.00 0.00 38.87 5.01
59 60 4.603535 AGCGGCCCAAAAGGTGCT 62.604 61.111 0.00 0.00 42.51 4.40
60 61 2.675075 GCGGCCCAAAAGGTGCTA 60.675 61.111 0.00 0.00 38.26 3.49
61 62 2.989881 GCGGCCCAAAAGGTGCTAC 61.990 63.158 0.00 0.00 38.26 3.58
62 63 2.340328 CGGCCCAAAAGGTGCTACC 61.340 63.158 0.00 0.00 38.99 3.18
63 64 1.228737 GGCCCAAAAGGTGCTACCA 60.229 57.895 0.00 0.00 41.95 3.25
64 65 0.614697 GGCCCAAAAGGTGCTACCAT 60.615 55.000 0.00 0.00 41.95 3.55
65 66 0.532115 GCCCAAAAGGTGCTACCATG 59.468 55.000 7.86 0.00 41.95 3.66
66 67 1.890573 GCCCAAAAGGTGCTACCATGA 60.891 52.381 0.00 0.00 41.95 3.07
67 68 1.818674 CCCAAAAGGTGCTACCATGAC 59.181 52.381 0.00 0.00 41.95 3.06
68 69 1.468520 CCAAAAGGTGCTACCATGACG 59.531 52.381 0.00 0.00 41.95 4.35
69 70 1.135689 CAAAAGGTGCTACCATGACGC 60.136 52.381 0.00 0.00 41.95 5.19
70 71 0.036164 AAAGGTGCTACCATGACGCA 59.964 50.000 0.00 0.00 41.95 5.24
71 72 0.036164 AAGGTGCTACCATGACGCAA 59.964 50.000 0.00 0.00 41.95 4.85
72 73 0.391661 AGGTGCTACCATGACGCAAG 60.392 55.000 0.00 0.00 41.95 4.01
73 74 1.369091 GGTGCTACCATGACGCAAGG 61.369 60.000 0.00 0.54 39.36 3.61
90 91 2.264480 GCGGGGTTGGCCAAATTC 59.736 61.111 22.47 12.77 36.17 2.17
91 92 2.282783 GCGGGGTTGGCCAAATTCT 61.283 57.895 22.47 0.00 36.17 2.40
92 93 1.591183 CGGGGTTGGCCAAATTCTG 59.409 57.895 22.47 13.57 36.17 3.02
93 94 1.296392 GGGGTTGGCCAAATTCTGC 59.704 57.895 22.47 6.33 36.17 4.26
94 95 1.479368 GGGGTTGGCCAAATTCTGCA 61.479 55.000 22.47 0.00 36.17 4.41
95 96 0.320683 GGGTTGGCCAAATTCTGCAC 60.321 55.000 22.47 5.43 36.17 4.57
96 97 0.667184 GGTTGGCCAAATTCTGCACG 60.667 55.000 22.47 0.00 34.09 5.34
97 98 0.313672 GTTGGCCAAATTCTGCACGA 59.686 50.000 22.47 0.00 0.00 4.35
98 99 1.035923 TTGGCCAAATTCTGCACGAA 58.964 45.000 17.98 1.85 35.78 3.85
99 100 1.035923 TGGCCAAATTCTGCACGAAA 58.964 45.000 0.61 0.00 34.79 3.46
100 101 1.000385 TGGCCAAATTCTGCACGAAAG 60.000 47.619 0.61 0.00 34.79 2.62
101 102 1.269448 GGCCAAATTCTGCACGAAAGA 59.731 47.619 0.00 0.00 34.79 2.52
102 103 2.589014 GCCAAATTCTGCACGAAAGAG 58.411 47.619 0.00 0.00 34.79 2.85
103 104 2.226437 GCCAAATTCTGCACGAAAGAGA 59.774 45.455 0.00 0.00 34.79 3.10
104 105 3.814945 CCAAATTCTGCACGAAAGAGAC 58.185 45.455 0.00 0.00 34.79 3.36
105 106 3.250762 CCAAATTCTGCACGAAAGAGACA 59.749 43.478 0.00 0.00 34.79 3.41
106 107 4.083110 CCAAATTCTGCACGAAAGAGACAT 60.083 41.667 0.00 0.00 34.79 3.06
107 108 4.935885 AATTCTGCACGAAAGAGACATC 57.064 40.909 0.00 0.00 34.79 3.06
108 109 3.385193 TTCTGCACGAAAGAGACATCA 57.615 42.857 0.00 0.00 0.00 3.07
109 110 2.951726 TCTGCACGAAAGAGACATCAG 58.048 47.619 0.00 0.00 0.00 2.90
110 111 2.558359 TCTGCACGAAAGAGACATCAGA 59.442 45.455 0.00 0.00 0.00 3.27
111 112 2.665537 CTGCACGAAAGAGACATCAGAC 59.334 50.000 0.00 0.00 0.00 3.51
112 113 1.651138 GCACGAAAGAGACATCAGACG 59.349 52.381 0.00 0.00 0.00 4.18
113 114 2.668556 GCACGAAAGAGACATCAGACGA 60.669 50.000 0.00 0.00 0.00 4.20
114 115 3.565516 CACGAAAGAGACATCAGACGAA 58.434 45.455 0.00 0.00 0.00 3.85
115 116 4.169508 CACGAAAGAGACATCAGACGAAT 58.830 43.478 0.00 0.00 0.00 3.34
116 117 5.332707 CACGAAAGAGACATCAGACGAATA 58.667 41.667 0.00 0.00 0.00 1.75
117 118 5.228220 CACGAAAGAGACATCAGACGAATAC 59.772 44.000 0.00 0.00 0.00 1.89
118 119 5.106277 ACGAAAGAGACATCAGACGAATACA 60.106 40.000 0.00 0.00 0.00 2.29
119 120 5.974158 CGAAAGAGACATCAGACGAATACAT 59.026 40.000 0.00 0.00 0.00 2.29
120 121 7.132863 CGAAAGAGACATCAGACGAATACATA 58.867 38.462 0.00 0.00 0.00 2.29
121 122 7.644157 CGAAAGAGACATCAGACGAATACATAA 59.356 37.037 0.00 0.00 0.00 1.90
122 123 9.302345 GAAAGAGACATCAGACGAATACATAAA 57.698 33.333 0.00 0.00 0.00 1.40
123 124 9.653287 AAAGAGACATCAGACGAATACATAAAA 57.347 29.630 0.00 0.00 0.00 1.52
124 125 9.823647 AAGAGACATCAGACGAATACATAAAAT 57.176 29.630 0.00 0.00 0.00 1.82
204 206 2.984435 TTTTTGGGACCCTCTTACCC 57.016 50.000 13.00 0.00 43.51 3.69
207 209 2.767073 GGGACCCTCTTACCCGGG 60.767 72.222 22.25 22.25 46.26 5.73
210 212 1.306397 GACCCTCTTACCCGGGGAA 60.306 63.158 27.92 23.91 45.07 3.97
219 221 0.614415 TACCCGGGGAACTTTCGCTA 60.614 55.000 27.92 0.00 39.76 4.26
245 247 2.736192 GGGTTGGCATTTTGAACGATTG 59.264 45.455 0.00 0.00 0.00 2.67
250 252 2.514902 GCATTTTGAACGATTGCGCTA 58.485 42.857 9.73 0.00 42.48 4.26
252 254 3.547468 GCATTTTGAACGATTGCGCTAAT 59.453 39.130 9.73 6.88 42.48 1.73
254 256 5.108630 GCATTTTGAACGATTGCGCTAATAG 60.109 40.000 9.73 9.74 42.48 1.73
272 274 5.717119 AATAGCTTTAGTTGTGAGGGGAT 57.283 39.130 0.00 0.00 0.00 3.85
314 317 3.486383 TGGCAGTTTCTCCAAAACTAGG 58.514 45.455 3.08 0.00 38.32 3.02
316 319 2.884639 GCAGTTTCTCCAAAACTAGGCA 59.115 45.455 3.08 0.00 38.32 4.75
350 354 0.317160 ACAGACGCCGTTTGATCTCA 59.683 50.000 15.16 0.00 0.00 3.27
360 364 2.476619 CGTTTGATCTCACGAAGCAACT 59.523 45.455 10.67 0.00 38.76 3.16
364 368 6.427150 GTTTGATCTCACGAAGCAACTAAAA 58.573 36.000 0.00 0.00 0.00 1.52
377 381 6.136541 AGCAACTAAAACAGTCAGGAAAAG 57.863 37.500 0.00 0.00 36.04 2.27
383 387 2.052782 ACAGTCAGGAAAAGGCGTTT 57.947 45.000 0.00 0.00 0.00 3.60
407 411 3.496160 CATCCCCCTCCCAGCCAG 61.496 72.222 0.00 0.00 0.00 4.85
416 420 2.711009 CCCTCCCAGCCAGATAACATTA 59.289 50.000 0.00 0.00 0.00 1.90
417 421 3.138283 CCCTCCCAGCCAGATAACATTAA 59.862 47.826 0.00 0.00 0.00 1.40
454 458 6.667414 TGGGTTAATTTGATAAATGCCACTCT 59.333 34.615 0.00 0.00 0.00 3.24
462 466 7.936496 TTGATAAATGCCACTCTAATTGTGA 57.064 32.000 0.00 0.00 37.60 3.58
508 512 3.907894 TTACACACTCCGAAAAATGCC 57.092 42.857 0.00 0.00 0.00 4.40
514 518 1.818674 ACTCCGAAAAATGCCATGGAC 59.181 47.619 18.40 7.64 0.00 4.02
517 521 1.632422 CGAAAAATGCCATGGACTGC 58.368 50.000 18.40 0.00 0.00 4.40
530 534 1.204146 GGACTGCCATACTTCCTCCA 58.796 55.000 0.00 0.00 0.00 3.86
612 616 8.931568 ACCAACTTTCTAGGAAAAAGTAGTAGA 58.068 33.333 8.10 0.00 44.13 2.59
677 689 9.832445 AAATGTTCTTTCATAGTATACCGATGT 57.168 29.630 12.70 0.00 0.00 3.06
792 807 9.503399 ACGGAGGGAGTATCATTTAATATTTTC 57.497 33.333 0.00 0.00 36.25 2.29
794 809 9.807921 GGAGGGAGTATCATTTAATATTTTCCA 57.192 33.333 0.00 0.00 36.25 3.53
815 830 4.875536 CCAAGCCAATTTTATGGTTAAGCC 59.124 41.667 1.51 0.00 42.75 4.35
867 882 3.483808 AATTAAGAGGCAGGCTAGCTC 57.516 47.619 15.72 3.54 34.17 4.09
911 926 2.352617 GCATCGGAGAGCCTCATCTAAG 60.353 54.545 0.00 0.00 43.63 2.18
926 941 2.571212 TCTAAGCACACAACCACAAGG 58.429 47.619 0.00 0.00 42.21 3.61
1149 1170 0.974383 AGTCCTACAACCAGAACGGG 59.026 55.000 0.00 0.00 40.22 5.28
1389 1413 0.102481 GTGACATCTATGGCGTCGGT 59.898 55.000 0.00 0.00 39.17 4.69
1626 1656 2.499685 CCGTCCGGGAAGATGGTC 59.500 66.667 11.78 0.00 38.03 4.02
1977 2007 2.751806 GGAGAAATCCAAGCAAGTCCAG 59.248 50.000 0.00 0.00 0.00 3.86
1979 2009 4.074970 GAGAAATCCAAGCAAGTCCAGAA 58.925 43.478 0.00 0.00 0.00 3.02
2022 2052 1.134401 CAGTACCGGCACATCCAGATT 60.134 52.381 7.75 0.00 34.01 2.40
2038 2068 1.286354 GATTTTCGACACGGCCACGA 61.286 55.000 2.24 5.33 44.60 4.35
2159 2195 2.120232 CTGCAGAACCGATAAGCTACG 58.880 52.381 8.42 0.00 0.00 3.51
2200 2738 3.438360 CGGCCAGTTGCTAATGAATTTC 58.562 45.455 2.24 0.00 40.92 2.17
2239 2785 7.174107 TCTTTACGTACCCTATATATTGGCC 57.826 40.000 7.62 0.00 0.00 5.36
2593 3452 2.505982 CCGGCCTTCACCATCGAT 59.494 61.111 0.00 0.00 0.00 3.59
2703 3577 4.715523 CCCGTCCACCAACGCCAT 62.716 66.667 0.00 0.00 41.26 4.40
3000 3886 2.281484 GGTGAGCGCCAAGGACAA 60.281 61.111 2.29 0.00 0.00 3.18
3055 3941 2.359354 TACAGCGCGCCAACCATT 60.359 55.556 30.33 3.60 0.00 3.16
3076 3962 2.440599 GGCCACATCAACCACCCT 59.559 61.111 0.00 0.00 0.00 4.34
3442 4341 0.544357 TGACCGGACACCTCTCCATT 60.544 55.000 9.46 0.00 0.00 3.16
3448 4347 3.118408 CCGGACACCTCTCCATTGATAAA 60.118 47.826 0.00 0.00 0.00 1.40
3519 4430 0.179200 CGCCCCTTTCGTTTTCATCG 60.179 55.000 0.00 0.00 0.00 3.84
3521 4432 1.530323 CCCCTTTCGTTTTCATCGGT 58.470 50.000 0.00 0.00 0.00 4.69
3609 4794 5.768662 CCTCCTCTTATGGTTGTCTCGTATA 59.231 44.000 0.00 0.00 0.00 1.47
3610 4795 6.434652 CCTCCTCTTATGGTTGTCTCGTATAT 59.565 42.308 0.00 0.00 0.00 0.86
3664 4852 1.335872 CCGGTTTCATGTCCTTGTTGC 60.336 52.381 0.00 0.00 0.00 4.17
3758 4947 2.818274 GGCCGACCGGTTGTGATC 60.818 66.667 20.63 6.59 37.65 2.92
3759 4948 2.264794 GCCGACCGGTTGTGATCT 59.735 61.111 20.63 0.00 37.65 2.75
3760 4949 1.375523 GCCGACCGGTTGTGATCTT 60.376 57.895 20.63 0.00 37.65 2.40
3761 4950 0.108520 GCCGACCGGTTGTGATCTTA 60.109 55.000 20.63 0.00 37.65 2.10
3762 4951 1.472728 GCCGACCGGTTGTGATCTTAT 60.473 52.381 20.63 0.00 37.65 1.73
3763 4952 2.901249 CCGACCGGTTGTGATCTTATT 58.099 47.619 20.63 0.00 0.00 1.40
3764 4953 3.267483 CCGACCGGTTGTGATCTTATTT 58.733 45.455 20.63 0.00 0.00 1.40
3765 4954 4.435425 CCGACCGGTTGTGATCTTATTTA 58.565 43.478 20.63 0.00 0.00 1.40
3766 4955 5.054477 CCGACCGGTTGTGATCTTATTTAT 58.946 41.667 20.63 0.00 0.00 1.40
3767 4956 5.526111 CCGACCGGTTGTGATCTTATTTATT 59.474 40.000 20.63 0.00 0.00 1.40
3768 4957 6.702723 CCGACCGGTTGTGATCTTATTTATTA 59.297 38.462 20.63 0.00 0.00 0.98
3907 5096 3.942748 AGCCTGAAACAAACGAAACAGTA 59.057 39.130 0.00 0.00 0.00 2.74
4269 5464 4.442706 CCATCTATTTAGCGGTGTGTCTT 58.557 43.478 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.338249 CAAGGCCGGATATGAATTCGAT 58.662 45.455 5.05 0.00 36.05 3.59
1 2 2.766313 CAAGGCCGGATATGAATTCGA 58.234 47.619 5.05 0.00 36.05 3.71
2 3 1.197721 GCAAGGCCGGATATGAATTCG 59.802 52.381 5.05 0.00 33.56 3.34
3 4 1.197721 CGCAAGGCCGGATATGAATTC 59.802 52.381 5.05 0.00 0.00 2.17
4 5 1.238439 CGCAAGGCCGGATATGAATT 58.762 50.000 5.05 0.00 0.00 2.17
5 6 0.108585 ACGCAAGGCCGGATATGAAT 59.891 50.000 5.05 0.00 46.39 2.57
6 7 0.531974 GACGCAAGGCCGGATATGAA 60.532 55.000 5.05 0.00 42.36 2.57
7 8 1.069090 GACGCAAGGCCGGATATGA 59.931 57.895 5.05 0.00 42.36 2.15
8 9 3.642755 GACGCAAGGCCGGATATG 58.357 61.111 5.05 0.03 42.36 1.78
17 18 0.321564 TTGATCCACCTGACGCAAGG 60.322 55.000 2.48 2.48 46.39 3.61
18 19 6.893308 TAGGTTTGATCCACCTGACGCAAG 62.893 50.000 19.61 0.00 44.89 4.01
19 20 1.234821 GTTTGATCCACCTGACGCAA 58.765 50.000 0.00 0.00 0.00 4.85
20 21 0.605319 GGTTTGATCCACCTGACGCA 60.605 55.000 4.25 0.00 0.00 5.24
21 22 0.321653 AGGTTTGATCCACCTGACGC 60.322 55.000 12.00 0.00 43.52 5.19
22 23 3.262420 CTTAGGTTTGATCCACCTGACG 58.738 50.000 19.61 7.50 44.89 4.35
23 24 3.010420 GCTTAGGTTTGATCCACCTGAC 58.990 50.000 19.61 8.36 44.89 3.51
24 25 2.354704 CGCTTAGGTTTGATCCACCTGA 60.355 50.000 19.61 12.74 44.89 3.86
25 26 2.009774 CGCTTAGGTTTGATCCACCTG 58.990 52.381 19.61 8.44 44.89 4.00
26 27 1.065418 CCGCTTAGGTTTGATCCACCT 60.065 52.381 16.06 16.06 46.95 4.00
27 28 1.379527 CCGCTTAGGTTTGATCCACC 58.620 55.000 3.37 3.37 34.51 4.61
28 29 0.733150 GCCGCTTAGGTTTGATCCAC 59.267 55.000 0.00 0.00 43.70 4.02
29 30 0.393808 GGCCGCTTAGGTTTGATCCA 60.394 55.000 0.00 0.00 43.70 3.41
30 31 1.101635 GGGCCGCTTAGGTTTGATCC 61.102 60.000 0.00 0.00 43.70 3.36
31 32 0.393808 TGGGCCGCTTAGGTTTGATC 60.394 55.000 0.00 0.00 43.70 2.92
32 33 0.039035 TTGGGCCGCTTAGGTTTGAT 59.961 50.000 0.00 0.00 43.70 2.57
33 34 0.178987 TTTGGGCCGCTTAGGTTTGA 60.179 50.000 0.00 0.00 43.70 2.69
34 35 0.676736 TTTTGGGCCGCTTAGGTTTG 59.323 50.000 0.00 0.00 43.70 2.93
35 36 0.966179 CTTTTGGGCCGCTTAGGTTT 59.034 50.000 0.00 0.00 43.70 3.27
36 37 0.898326 CCTTTTGGGCCGCTTAGGTT 60.898 55.000 0.00 0.00 43.70 3.50
37 38 1.304134 CCTTTTGGGCCGCTTAGGT 60.304 57.895 0.00 0.00 43.70 3.08
38 39 1.304134 ACCTTTTGGGCCGCTTAGG 60.304 57.895 11.01 11.01 46.08 2.69
39 40 1.883021 CACCTTTTGGGCCGCTTAG 59.117 57.895 0.00 0.00 46.08 2.18
40 41 2.272447 GCACCTTTTGGGCCGCTTA 61.272 57.895 0.00 0.00 46.08 3.09
41 42 2.706952 TAGCACCTTTTGGGCCGCTT 62.707 55.000 5.17 0.00 42.35 4.68
42 43 3.204467 TAGCACCTTTTGGGCCGCT 62.204 57.895 0.00 1.54 45.47 5.52
43 44 2.675075 TAGCACCTTTTGGGCCGC 60.675 61.111 0.00 0.00 46.08 6.53
44 45 2.340328 GGTAGCACCTTTTGGGCCG 61.340 63.158 0.00 0.00 46.08 6.13
45 46 0.614697 ATGGTAGCACCTTTTGGGCC 60.615 55.000 0.00 0.00 46.08 5.80
46 47 0.532115 CATGGTAGCACCTTTTGGGC 59.468 55.000 0.00 0.00 46.08 5.36
47 48 1.818674 GTCATGGTAGCACCTTTTGGG 59.181 52.381 0.00 0.00 46.08 4.12
49 50 1.135689 GCGTCATGGTAGCACCTTTTG 60.136 52.381 0.00 0.00 39.58 2.44
50 51 1.165270 GCGTCATGGTAGCACCTTTT 58.835 50.000 0.00 0.00 39.58 2.27
51 52 0.036164 TGCGTCATGGTAGCACCTTT 59.964 50.000 0.00 0.00 39.58 3.11
52 53 0.036164 TTGCGTCATGGTAGCACCTT 59.964 50.000 0.00 0.00 40.92 3.50
53 54 0.391661 CTTGCGTCATGGTAGCACCT 60.392 55.000 0.00 0.00 40.92 4.00
54 55 1.369091 CCTTGCGTCATGGTAGCACC 61.369 60.000 0.00 0.00 40.92 5.01
55 56 1.982073 GCCTTGCGTCATGGTAGCAC 61.982 60.000 0.00 0.00 40.92 4.40
56 57 1.745115 GCCTTGCGTCATGGTAGCA 60.745 57.895 0.00 0.00 39.33 3.49
57 58 3.102097 GCCTTGCGTCATGGTAGC 58.898 61.111 11.45 0.00 32.20 3.58
73 74 2.264480 GAATTTGGCCAACCCCGC 59.736 61.111 20.35 2.28 33.59 6.13
74 75 1.591183 CAGAATTTGGCCAACCCCG 59.409 57.895 20.35 1.87 33.59 5.73
75 76 1.296392 GCAGAATTTGGCCAACCCC 59.704 57.895 20.35 9.88 33.59 4.95
76 77 0.320683 GTGCAGAATTTGGCCAACCC 60.321 55.000 20.35 10.26 33.59 4.11
77 78 0.667184 CGTGCAGAATTTGGCCAACC 60.667 55.000 20.35 10.65 0.00 3.77
78 79 0.313672 TCGTGCAGAATTTGGCCAAC 59.686 50.000 20.35 7.13 0.00 3.77
79 80 1.035923 TTCGTGCAGAATTTGGCCAA 58.964 45.000 16.05 16.05 33.14 4.52
80 81 1.000385 CTTTCGTGCAGAATTTGGCCA 60.000 47.619 0.00 0.00 38.86 5.36
81 82 1.269448 TCTTTCGTGCAGAATTTGGCC 59.731 47.619 0.00 0.00 38.86 5.36
82 83 2.226437 TCTCTTTCGTGCAGAATTTGGC 59.774 45.455 0.00 0.00 38.86 4.52
83 84 3.250762 TGTCTCTTTCGTGCAGAATTTGG 59.749 43.478 0.00 0.00 38.86 3.28
84 85 4.472691 TGTCTCTTTCGTGCAGAATTTG 57.527 40.909 0.00 0.00 38.86 2.32
85 86 4.756642 TGATGTCTCTTTCGTGCAGAATTT 59.243 37.500 0.00 0.00 38.86 1.82
86 87 4.318332 TGATGTCTCTTTCGTGCAGAATT 58.682 39.130 0.00 0.00 38.86 2.17
87 88 3.930336 TGATGTCTCTTTCGTGCAGAAT 58.070 40.909 0.00 0.00 38.86 2.40
88 89 3.005791 TCTGATGTCTCTTTCGTGCAGAA 59.994 43.478 0.00 0.00 37.01 3.02
89 90 2.558359 TCTGATGTCTCTTTCGTGCAGA 59.442 45.455 0.00 0.00 0.00 4.26
90 91 2.665537 GTCTGATGTCTCTTTCGTGCAG 59.334 50.000 0.00 0.00 0.00 4.41
91 92 2.677199 GTCTGATGTCTCTTTCGTGCA 58.323 47.619 0.00 0.00 0.00 4.57
92 93 1.651138 CGTCTGATGTCTCTTTCGTGC 59.349 52.381 0.00 0.00 0.00 5.34
93 94 3.203161 TCGTCTGATGTCTCTTTCGTG 57.797 47.619 0.00 0.00 0.00 4.35
94 95 3.917329 TTCGTCTGATGTCTCTTTCGT 57.083 42.857 0.00 0.00 0.00 3.85
95 96 5.332707 TGTATTCGTCTGATGTCTCTTTCG 58.667 41.667 0.00 0.00 0.00 3.46
96 97 8.858003 TTATGTATTCGTCTGATGTCTCTTTC 57.142 34.615 0.00 0.00 0.00 2.62
97 98 9.653287 TTTTATGTATTCGTCTGATGTCTCTTT 57.347 29.630 0.00 0.00 0.00 2.52
98 99 9.823647 ATTTTATGTATTCGTCTGATGTCTCTT 57.176 29.630 0.00 0.00 0.00 2.85
202 204 1.153429 CTAGCGAAAGTTCCCCGGG 60.153 63.158 15.80 15.80 0.00 5.73
204 206 1.641577 CTTCTAGCGAAAGTTCCCCG 58.358 55.000 0.00 0.00 0.00 5.73
207 209 1.278413 ACCCCTTCTAGCGAAAGTTCC 59.722 52.381 0.00 0.00 0.00 3.62
210 212 1.003233 CCAACCCCTTCTAGCGAAAGT 59.997 52.381 0.00 0.00 0.00 2.66
219 221 2.368548 GTTCAAAATGCCAACCCCTTCT 59.631 45.455 0.00 0.00 0.00 2.85
250 252 5.191722 TCATCCCCTCACAACTAAAGCTATT 59.808 40.000 0.00 0.00 0.00 1.73
252 254 4.081087 GTCATCCCCTCACAACTAAAGCTA 60.081 45.833 0.00 0.00 0.00 3.32
254 256 3.010420 GTCATCCCCTCACAACTAAAGC 58.990 50.000 0.00 0.00 0.00 3.51
296 299 5.712152 AATGCCTAGTTTTGGAGAAACTG 57.288 39.130 12.91 4.90 40.38 3.16
323 327 2.761392 AACGGCGTCTGTTTTAAACC 57.239 45.000 15.17 0.00 0.00 3.27
337 341 0.095417 GCTTCGTGAGATCAAACGGC 59.905 55.000 17.00 11.26 41.60 5.68
339 343 2.476619 AGTTGCTTCGTGAGATCAAACG 59.523 45.455 12.51 12.51 41.60 3.60
350 354 3.560068 CCTGACTGTTTTAGTTGCTTCGT 59.440 43.478 0.00 0.00 40.53 3.85
360 364 3.547746 ACGCCTTTTCCTGACTGTTTTA 58.452 40.909 0.00 0.00 0.00 1.52
364 368 1.676006 CAAACGCCTTTTCCTGACTGT 59.324 47.619 0.00 0.00 0.00 3.55
377 381 1.212751 GGGATGTCAAGCAAACGCC 59.787 57.895 0.00 0.00 0.00 5.68
383 387 2.308722 GGGAGGGGGATGTCAAGCA 61.309 63.158 0.00 0.00 0.00 3.91
454 458 8.312564 TGGCATTTTTCTGAATCATCACAATTA 58.687 29.630 0.00 0.00 0.00 1.40
459 463 5.575606 CAGTGGCATTTTTCTGAATCATCAC 59.424 40.000 0.00 0.00 0.00 3.06
460 464 5.716094 CAGTGGCATTTTTCTGAATCATCA 58.284 37.500 0.00 0.00 0.00 3.07
462 466 4.501071 GCAGTGGCATTTTTCTGAATCAT 58.499 39.130 6.27 0.00 40.72 2.45
514 518 1.770658 TGGATGGAGGAAGTATGGCAG 59.229 52.381 0.00 0.00 0.00 4.85
517 521 4.712051 TTCATGGATGGAGGAAGTATGG 57.288 45.455 0.00 0.00 0.00 2.74
524 528 5.665360 TGTACACTTATTCATGGATGGAGGA 59.335 40.000 0.00 0.00 0.00 3.71
573 577 8.400186 CCTAGAAAGTTGGTCGAAGTTTTAAAA 58.600 33.333 0.00 0.00 37.33 1.52
584 588 6.704937 ACTACTTTTTCCTAGAAAGTTGGTCG 59.295 38.462 11.90 2.29 42.90 4.79
710 724 9.579610 CGCAAGTCAAAATTTTAAAAATTCGAT 57.420 25.926 4.44 0.00 0.00 3.59
792 807 4.875536 GGCTTAACCATAAAATTGGCTTGG 59.124 41.667 0.00 0.00 40.68 3.61
794 809 5.483583 TCAGGCTTAACCATAAAATTGGCTT 59.516 36.000 0.00 0.00 43.14 4.35
815 830 5.063944 CAGTCCGTTCTGTATTTTGGATCAG 59.936 44.000 0.00 0.00 0.00 2.90
867 882 4.997395 CCTGATTTATAGTTGGATGGACGG 59.003 45.833 0.00 0.00 0.00 4.79
911 926 0.104671 ATTGCCTTGTGGTTGTGTGC 59.895 50.000 0.00 0.00 35.27 4.57
926 941 6.563753 GCTCTTCTTCACTTATGATCGATTGC 60.564 42.308 0.00 0.00 33.85 3.56
1371 1395 0.102300 CACCGACGCCATAGATGTCA 59.898 55.000 0.00 0.00 32.91 3.58
1389 1413 4.262089 TCCATGCACACACCGCCA 62.262 61.111 0.00 0.00 0.00 5.69
1395 1422 1.302752 GCTGTCCTCCATGCACACA 60.303 57.895 0.00 0.00 0.00 3.72
1523 1553 2.431942 CGGTCCTGTACACCACGC 60.432 66.667 0.00 0.00 32.89 5.34
1608 1638 2.284405 ACCATCTTCCCGGACGGT 60.284 61.111 0.73 0.00 0.00 4.83
1773 1803 2.440539 AGAAGATGACGTTGTCGCTT 57.559 45.000 0.00 5.06 41.18 4.68
1810 1840 2.419620 GTTGGTGGGCGGGTTTTG 59.580 61.111 0.00 0.00 0.00 2.44
1812 1842 2.835895 GTGTTGGTGGGCGGGTTT 60.836 61.111 0.00 0.00 0.00 3.27
1977 2007 2.158959 CACGCGGTCGACCATCTTC 61.159 63.158 32.80 14.97 39.41 2.87
1979 2009 4.129737 CCACGCGGTCGACCATCT 62.130 66.667 32.80 12.02 39.41 2.90
2022 2052 2.659244 GTCGTGGCCGTGTCGAAA 60.659 61.111 12.24 0.00 35.44 3.46
2159 2195 2.808202 CGGACCTTGATCATGATGGGTC 60.808 54.545 27.19 27.19 41.50 4.46
2213 2751 8.262933 GGCCAATATATAGGGTACGTAAAGAAT 58.737 37.037 0.00 0.00 30.48 2.40
2215 2753 6.127647 CGGCCAATATATAGGGTACGTAAAGA 60.128 42.308 2.24 0.00 30.48 2.52
2220 2758 2.762327 CCGGCCAATATATAGGGTACGT 59.238 50.000 2.24 0.00 0.00 3.57
2226 2772 0.179056 CCGGCCGGCCAATATATAGG 60.179 60.000 42.78 29.13 35.37 2.57
2239 2785 0.107703 ATATCATATGTGCCCGGCCG 60.108 55.000 21.04 21.04 0.00 6.13
2401 3136 2.859165 TCTTGCCGTTCTTGGAGATT 57.141 45.000 0.00 0.00 0.00 2.40
2593 3452 1.153309 CATGATCTGCACCGGCTCA 60.153 57.895 0.00 0.00 41.91 4.26
2703 3577 2.391724 GAACACGAGCTTGTCCCCCA 62.392 60.000 2.72 0.00 0.00 4.96
3000 3886 3.580319 GCACCACCCCCTTGACCT 61.580 66.667 0.00 0.00 0.00 3.85
3055 3941 4.277009 TGGTTGATGTGGCCCGCA 62.277 61.111 0.00 0.00 0.00 5.69
3076 3962 1.302431 CATGTCGGGGCTGAACACA 60.302 57.895 0.00 0.00 0.00 3.72
3442 4341 4.905429 TGAGTTAGCAGCACCTTTTATCA 58.095 39.130 0.00 0.00 0.00 2.15
3448 4347 2.638480 TGTTGAGTTAGCAGCACCTT 57.362 45.000 0.00 0.00 0.00 3.50
3519 4430 3.791245 TGCATGGTTTGTTTTGAAGACC 58.209 40.909 0.00 0.00 0.00 3.85
3521 4432 3.808726 GCATGCATGGTTTGTTTTGAAGA 59.191 39.130 27.34 0.00 0.00 2.87
3576 4487 3.246167 ACCATAAGAGGAGGGACAAGACT 60.246 47.826 0.00 0.00 0.00 3.24
3609 4794 2.216046 CAGGTAGTTCGATGCATGCAT 58.784 47.619 32.66 32.66 39.69 3.96
3610 4795 1.655484 CAGGTAGTTCGATGCATGCA 58.345 50.000 25.04 25.04 0.00 3.96
3709 4897 5.205056 ACATTGACCCTTTACAAACCAGAA 58.795 37.500 0.00 0.00 0.00 3.02
3714 4903 5.356426 AGCAAACATTGACCCTTTACAAAC 58.644 37.500 0.00 0.00 0.00 2.93
3767 4956 9.656323 AGATGTAACATAGACAGACCCTAAATA 57.344 33.333 0.00 0.00 0.00 1.40
3768 4957 8.554490 AGATGTAACATAGACAGACCCTAAAT 57.446 34.615 0.00 0.00 0.00 1.40
3772 4961 6.912426 TCTAGATGTAACATAGACAGACCCT 58.088 40.000 0.00 0.00 0.00 4.34
4269 5464 4.140900 AGCCTACTAGAAGCTAGGGATCAA 60.141 45.833 0.00 0.00 34.38 2.57
4391 5590 6.036953 GCAAATTGGTGAACATGTTTCTGAAA 59.963 34.615 13.36 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.