Multiple sequence alignment - TraesCS5A01G011500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G011500 chr5A 100.000 3820 0 0 1 3820 7507489 7503670 0.000000e+00 7055.0
1 TraesCS5A01G011500 chr5A 89.100 1422 138 11 1253 2670 7619396 7620804 0.000000e+00 1751.0
2 TraesCS5A01G011500 chr5A 86.653 472 57 6 3221 3690 659502986 659503453 5.660000e-143 518.0
3 TraesCS5A01G011500 chr5A 89.429 350 34 3 3223 3569 338848263 338848612 4.530000e-119 438.0
4 TraesCS5A01G011500 chr5A 87.200 250 30 2 1 249 480481290 480481042 2.250000e-72 283.0
5 TraesCS5A01G011500 chr5A 86.957 230 25 5 2997 3223 659502693 659502920 1.760000e-63 254.0
6 TraesCS5A01G011500 chr5D 91.023 1916 105 27 899 2788 9387466 9385592 0.000000e+00 2523.0
7 TraesCS5A01G011500 chr5D 90.383 1435 115 10 1243 2670 9471138 9472556 0.000000e+00 1864.0
8 TraesCS5A01G011500 chr5D 92.869 617 39 5 3209 3820 80188150 80188766 0.000000e+00 891.0
9 TraesCS5A01G011500 chr5D 90.025 401 30 4 249 642 9388186 9387789 9.470000e-141 510.0
10 TraesCS5A01G011500 chr5D 88.839 224 22 3 3000 3223 80187880 80188100 4.860000e-69 272.0
11 TraesCS5A01G011500 chr5D 87.225 227 23 5 2999 3223 450176578 450176800 1.760000e-63 254.0
12 TraesCS5A01G011500 chr5D 91.667 144 12 0 713 856 9387793 9387650 2.330000e-47 200.0
13 TraesCS5A01G011500 chr5D 98.077 52 1 0 852 903 9387628 9387577 1.460000e-14 91.6
14 TraesCS5A01G011500 chr5D 95.455 44 2 0 2829 2872 9338055 9338012 1.900000e-08 71.3
15 TraesCS5A01G011500 chr5B 88.323 2021 134 49 852 2830 9334827 9332867 0.000000e+00 2331.0
16 TraesCS5A01G011500 chr5B 89.872 1481 121 10 1243 2717 9417059 9418516 0.000000e+00 1877.0
17 TraesCS5A01G011500 chr5B 93.793 580 35 1 3221 3799 522025082 522024503 0.000000e+00 870.0
18 TraesCS5A01G011500 chr5B 91.589 214 18 0 321 534 9335054 9334841 2.890000e-76 296.0
19 TraesCS5A01G011500 chr5B 89.427 227 17 5 3000 3226 522025361 522025142 2.910000e-71 279.0
20 TraesCS5A01G011500 chr4A 91.681 601 48 2 3221 3820 83741088 83740489 0.000000e+00 832.0
21 TraesCS5A01G011500 chr4A 75.018 1369 299 25 1325 2670 738815426 738816774 9.140000e-166 593.0
22 TraesCS5A01G011500 chr4A 89.270 233 24 1 2994 3226 83741382 83741151 1.340000e-74 291.0
23 TraesCS5A01G011500 chr2A 90.108 556 50 3 3224 3777 25087234 25086682 0.000000e+00 717.0
24 TraesCS5A01G011500 chr7D 75.347 1367 298 24 1325 2670 4877384 4878732 4.190000e-174 621.0
25 TraesCS5A01G011500 chr7D 87.805 246 29 1 5 249 608419918 608420163 1.740000e-73 287.0
26 TraesCS5A01G011500 chr7A 75.237 1369 296 27 1325 2670 4687623 4686275 9.070000e-171 610.0
27 TraesCS5A01G011500 chr1B 85.420 583 54 12 3223 3774 685083813 685084395 9.200000e-161 577.0
28 TraesCS5A01G011500 chr1B 89.121 239 20 6 2995 3227 43958433 43958195 3.730000e-75 292.0
29 TraesCS5A01G011500 chr6B 84.602 578 57 17 3231 3777 586076717 586077293 2.590000e-151 545.0
30 TraesCS5A01G011500 chr6B 88.085 235 17 9 2997 3221 586076423 586076656 6.290000e-68 268.0
31 TraesCS5A01G011500 chr3D 89.583 288 19 6 3223 3508 474817001 474817279 4.690000e-94 355.0
32 TraesCS5A01G011500 chr3D 88.048 251 24 6 1 249 565077220 565077466 3.730000e-75 292.0
33 TraesCS5A01G011500 chr3D 85.502 269 36 3 1 267 10336729 10336996 1.050000e-70 278.0
34 TraesCS5A01G011500 chr3D 88.987 227 20 5 2999 3221 474816727 474816952 3.760000e-70 276.0
35 TraesCS5A01G011500 chr3D 77.522 347 74 4 1360 1704 600188656 600188312 5.000000e-49 206.0
36 TraesCS5A01G011500 chr6D 88.618 246 26 2 5 249 411764880 411764636 8.020000e-77 298.0
37 TraesCS5A01G011500 chr6D 86.561 253 32 2 1 252 54567435 54567184 1.050000e-70 278.0
38 TraesCS5A01G011500 chr6D 88.261 230 21 5 2996 3223 470142486 470142711 1.750000e-68 270.0
39 TraesCS5A01G011500 chr2B 87.008 254 31 2 1 253 232454970 232455222 6.250000e-73 285.0
40 TraesCS5A01G011500 chr1D 87.200 250 31 1 1 249 54179007 54178758 2.250000e-72 283.0
41 TraesCS5A01G011500 chr1D 85.130 269 34 5 1 268 240124395 240124658 1.750000e-68 270.0
42 TraesCS5A01G011500 chr6A 92.771 83 5 1 3693 3774 12375151 12375233 6.700000e-23 119.0
43 TraesCS5A01G011500 chr7B 80.451 133 23 3 1808 1938 140163970 140164101 8.730000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G011500 chr5A 7503670 7507489 3819 True 7055.00 7055 100.0000 1 3820 1 chr5A.!!$R1 3819
1 TraesCS5A01G011500 chr5A 7619396 7620804 1408 False 1751.00 1751 89.1000 1253 2670 1 chr5A.!!$F1 1417
2 TraesCS5A01G011500 chr5A 659502693 659503453 760 False 386.00 518 86.8050 2997 3690 2 chr5A.!!$F3 693
3 TraesCS5A01G011500 chr5D 9471138 9472556 1418 False 1864.00 1864 90.3830 1243 2670 1 chr5D.!!$F1 1427
4 TraesCS5A01G011500 chr5D 9385592 9388186 2594 True 831.15 2523 92.6980 249 2788 4 chr5D.!!$R2 2539
5 TraesCS5A01G011500 chr5D 80187880 80188766 886 False 581.50 891 90.8540 3000 3820 2 chr5D.!!$F3 820
6 TraesCS5A01G011500 chr5B 9417059 9418516 1457 False 1877.00 1877 89.8720 1243 2717 1 chr5B.!!$F1 1474
7 TraesCS5A01G011500 chr5B 9332867 9335054 2187 True 1313.50 2331 89.9560 321 2830 2 chr5B.!!$R1 2509
8 TraesCS5A01G011500 chr5B 522024503 522025361 858 True 574.50 870 91.6100 3000 3799 2 chr5B.!!$R2 799
9 TraesCS5A01G011500 chr4A 738815426 738816774 1348 False 593.00 593 75.0180 1325 2670 1 chr4A.!!$F1 1345
10 TraesCS5A01G011500 chr4A 83740489 83741382 893 True 561.50 832 90.4755 2994 3820 2 chr4A.!!$R1 826
11 TraesCS5A01G011500 chr2A 25086682 25087234 552 True 717.00 717 90.1080 3224 3777 1 chr2A.!!$R1 553
12 TraesCS5A01G011500 chr7D 4877384 4878732 1348 False 621.00 621 75.3470 1325 2670 1 chr7D.!!$F1 1345
13 TraesCS5A01G011500 chr7A 4686275 4687623 1348 True 610.00 610 75.2370 1325 2670 1 chr7A.!!$R1 1345
14 TraesCS5A01G011500 chr1B 685083813 685084395 582 False 577.00 577 85.4200 3223 3774 1 chr1B.!!$F1 551
15 TraesCS5A01G011500 chr6B 586076423 586077293 870 False 406.50 545 86.3435 2997 3777 2 chr6B.!!$F1 780
16 TraesCS5A01G011500 chr3D 474816727 474817279 552 False 315.50 355 89.2850 2999 3508 2 chr3D.!!$F3 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.033781 ATTTCAACCCGAACCGACGA 59.966 50.0 0.0 0.0 31.73 4.20 F
189 190 0.168128 GCGACTGGACCGATTTTTGG 59.832 55.0 0.0 0.0 0.00 3.28 F
191 192 0.168128 GACTGGACCGATTTTTGGCG 59.832 55.0 0.0 0.0 0.00 5.69 F
193 194 0.168128 CTGGACCGATTTTTGGCGTC 59.832 55.0 0.0 0.0 0.00 5.19 F
215 216 0.319555 CGGCTGAAAACTCGTCTGGA 60.320 55.0 0.0 0.0 0.00 3.86 F
1271 1452 0.333993 AGCAAAGATGGGCTGGTGAT 59.666 50.0 0.0 0.0 39.30 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1068 1227 0.249398 CCGCCTGGTACTGCTAAAGT 59.751 55.0 0.00 0.00 43.40 2.66 R
1069 1228 0.462047 CCCGCCTGGTACTGCTAAAG 60.462 60.0 0.00 0.00 0.00 1.85 R
1071 1230 0.689745 ATCCCGCCTGGTACTGCTAA 60.690 55.0 0.00 0.00 34.77 3.09 R
1983 2173 0.725686 CGGTGATCGTCGTGTAGTCT 59.274 55.0 0.00 0.00 0.00 3.24 R
2013 2203 1.293062 ACTTGATGGTGATGAGGCCT 58.707 50.0 3.86 3.86 0.00 5.19 R
2890 3100 0.037232 CACGTCCTCTTCCTCCAACC 60.037 60.0 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.666989 GACTAAGCGGGAAGAAGCG 58.333 57.895 0.00 0.00 38.61 4.68
19 20 0.172803 GACTAAGCGGGAAGAAGCGA 59.827 55.000 0.00 0.00 38.61 4.93
20 21 0.173708 ACTAAGCGGGAAGAAGCGAG 59.826 55.000 0.00 0.00 38.61 5.03
21 22 0.456221 CTAAGCGGGAAGAAGCGAGA 59.544 55.000 0.00 0.00 38.61 4.04
22 23 0.172803 TAAGCGGGAAGAAGCGAGAC 59.827 55.000 0.00 0.00 38.61 3.36
23 24 2.820767 AAGCGGGAAGAAGCGAGACG 62.821 60.000 0.00 0.00 38.61 4.18
24 25 2.875485 CGGGAAGAAGCGAGACGA 59.125 61.111 0.00 0.00 0.00 4.20
25 26 1.226435 CGGGAAGAAGCGAGACGAG 60.226 63.158 0.00 0.00 0.00 4.18
26 27 1.884444 GGGAAGAAGCGAGACGAGT 59.116 57.895 0.00 0.00 0.00 4.18
27 28 0.179158 GGGAAGAAGCGAGACGAGTC 60.179 60.000 0.00 0.00 0.00 3.36
28 29 0.521659 GGAAGAAGCGAGACGAGTCG 60.522 60.000 11.85 11.85 43.08 4.18
34 35 3.482809 CGAGACGAGTCGCTGGTA 58.517 61.111 13.59 0.00 32.22 3.25
35 36 1.792301 CGAGACGAGTCGCTGGTAA 59.208 57.895 13.59 0.00 32.22 2.85
36 37 0.247735 CGAGACGAGTCGCTGGTAAG 60.248 60.000 13.59 0.00 32.22 2.34
37 38 0.099082 GAGACGAGTCGCTGGTAAGG 59.901 60.000 13.59 0.00 34.09 2.69
38 39 0.322277 AGACGAGTCGCTGGTAAGGA 60.322 55.000 13.59 0.00 34.09 3.36
39 40 0.099082 GACGAGTCGCTGGTAAGGAG 59.901 60.000 13.59 0.00 0.00 3.69
40 41 1.313812 ACGAGTCGCTGGTAAGGAGG 61.314 60.000 13.59 0.00 0.00 4.30
41 42 1.817209 GAGTCGCTGGTAAGGAGGG 59.183 63.158 0.00 0.00 0.00 4.30
42 43 2.187163 GTCGCTGGTAAGGAGGGC 59.813 66.667 0.00 0.00 0.00 5.19
43 44 2.284331 TCGCTGGTAAGGAGGGCA 60.284 61.111 0.00 0.00 0.00 5.36
44 45 2.125106 CGCTGGTAAGGAGGGCAC 60.125 66.667 0.00 0.00 0.00 5.01
45 46 2.125106 GCTGGTAAGGAGGGCACG 60.125 66.667 0.00 0.00 0.00 5.34
46 47 2.125106 CTGGTAAGGAGGGCACGC 60.125 66.667 0.00 0.00 0.00 5.34
47 48 4.077184 TGGTAAGGAGGGCACGCG 62.077 66.667 3.53 3.53 0.00 6.01
48 49 4.832608 GGTAAGGAGGGCACGCGG 62.833 72.222 12.47 0.00 0.00 6.46
63 64 3.722295 CGGCTCTTTCGCGCCAAA 61.722 61.111 0.00 0.00 46.62 3.28
64 65 2.642700 GGCTCTTTCGCGCCAAAA 59.357 55.556 0.00 1.69 45.59 2.44
65 66 1.007849 GGCTCTTTCGCGCCAAAAA 60.008 52.632 0.00 0.00 45.59 1.94
119 120 4.029809 CAGGGGTCGGGTTGGGTC 62.030 72.222 0.00 0.00 0.00 4.46
120 121 4.265507 AGGGGTCGGGTTGGGTCT 62.266 66.667 0.00 0.00 0.00 3.85
121 122 4.029809 GGGGTCGGGTTGGGTCTG 62.030 72.222 0.00 0.00 0.00 3.51
122 123 4.717313 GGGTCGGGTTGGGTCTGC 62.717 72.222 0.00 0.00 0.00 4.26
123 124 4.717313 GGTCGGGTTGGGTCTGCC 62.717 72.222 0.00 0.00 0.00 4.85
132 133 4.778143 GGGTCTGCCGACGCCAAT 62.778 66.667 13.39 0.00 44.68 3.16
133 134 2.746277 GGTCTGCCGACGCCAATT 60.746 61.111 1.95 0.00 41.16 2.32
134 135 2.332654 GGTCTGCCGACGCCAATTT 61.333 57.895 1.95 0.00 41.16 1.82
135 136 1.134694 GTCTGCCGACGCCAATTTC 59.865 57.895 0.00 0.00 0.00 2.17
136 137 1.302112 TCTGCCGACGCCAATTTCA 60.302 52.632 0.00 0.00 0.00 2.69
137 138 0.886938 TCTGCCGACGCCAATTTCAA 60.887 50.000 0.00 0.00 0.00 2.69
138 139 0.729140 CTGCCGACGCCAATTTCAAC 60.729 55.000 0.00 0.00 0.00 3.18
139 140 1.443702 GCCGACGCCAATTTCAACC 60.444 57.895 0.00 0.00 0.00 3.77
140 141 1.211709 CCGACGCCAATTTCAACCC 59.788 57.895 0.00 0.00 0.00 4.11
141 142 1.154301 CGACGCCAATTTCAACCCG 60.154 57.895 0.00 0.00 0.00 5.28
142 143 1.570347 CGACGCCAATTTCAACCCGA 61.570 55.000 0.00 0.00 0.00 5.14
143 144 0.594110 GACGCCAATTTCAACCCGAA 59.406 50.000 0.00 0.00 0.00 4.30
144 145 0.312729 ACGCCAATTTCAACCCGAAC 59.687 50.000 0.00 0.00 31.73 3.95
145 146 0.388006 CGCCAATTTCAACCCGAACC 60.388 55.000 0.00 0.00 31.73 3.62
146 147 0.388006 GCCAATTTCAACCCGAACCG 60.388 55.000 0.00 0.00 31.73 4.44
147 148 1.240256 CCAATTTCAACCCGAACCGA 58.760 50.000 0.00 0.00 31.73 4.69
148 149 1.068816 CCAATTTCAACCCGAACCGAC 60.069 52.381 0.00 0.00 31.73 4.79
149 150 0.869730 AATTTCAACCCGAACCGACG 59.130 50.000 0.00 0.00 31.73 5.12
150 151 0.033781 ATTTCAACCCGAACCGACGA 59.966 50.000 0.00 0.00 31.73 4.20
151 152 0.179089 TTTCAACCCGAACCGACGAA 60.179 50.000 0.00 0.00 31.73 3.85
152 153 0.179089 TTCAACCCGAACCGACGAAA 60.179 50.000 0.00 0.00 35.09 3.46
153 154 0.179089 TCAACCCGAACCGACGAAAA 60.179 50.000 0.00 0.00 35.09 2.29
154 155 0.869730 CAACCCGAACCGACGAAAAT 59.130 50.000 0.00 0.00 35.09 1.82
155 156 1.264826 CAACCCGAACCGACGAAAATT 59.735 47.619 0.00 0.00 35.09 1.82
156 157 2.453983 ACCCGAACCGACGAAAATTA 57.546 45.000 0.00 0.00 35.09 1.40
157 158 2.340337 ACCCGAACCGACGAAAATTAG 58.660 47.619 0.00 0.00 35.09 1.73
158 159 1.662122 CCCGAACCGACGAAAATTAGG 59.338 52.381 0.00 0.00 35.09 2.69
159 160 1.061566 CCGAACCGACGAAAATTAGGC 59.938 52.381 0.00 0.00 35.09 3.93
160 161 1.061566 CGAACCGACGAAAATTAGGCC 59.938 52.381 0.00 0.00 35.09 5.19
161 162 1.399440 GAACCGACGAAAATTAGGCCC 59.601 52.381 0.00 0.00 0.00 5.80
162 163 0.616891 ACCGACGAAAATTAGGCCCT 59.383 50.000 0.00 0.00 0.00 5.19
163 164 1.003928 ACCGACGAAAATTAGGCCCTT 59.996 47.619 0.00 0.00 0.00 3.95
164 165 1.400494 CCGACGAAAATTAGGCCCTTG 59.600 52.381 0.00 0.00 0.00 3.61
165 166 1.400494 CGACGAAAATTAGGCCCTTGG 59.600 52.381 0.00 0.00 0.00 3.61
166 167 1.749063 GACGAAAATTAGGCCCTTGGG 59.251 52.381 0.00 0.32 0.00 4.12
184 185 4.814294 GGCGCGACTGGACCGATT 62.814 66.667 12.10 0.00 0.00 3.34
185 186 2.813908 GCGCGACTGGACCGATTT 60.814 61.111 12.10 0.00 0.00 2.17
186 187 2.388232 GCGCGACTGGACCGATTTT 61.388 57.895 12.10 0.00 0.00 1.82
187 188 1.908066 GCGCGACTGGACCGATTTTT 61.908 55.000 12.10 0.00 0.00 1.94
188 189 0.179225 CGCGACTGGACCGATTTTTG 60.179 55.000 0.00 0.00 0.00 2.44
189 190 0.168128 GCGACTGGACCGATTTTTGG 59.832 55.000 0.00 0.00 0.00 3.28
190 191 0.168128 CGACTGGACCGATTTTTGGC 59.832 55.000 0.00 0.00 0.00 4.52
191 192 0.168128 GACTGGACCGATTTTTGGCG 59.832 55.000 0.00 0.00 0.00 5.69
192 193 0.536460 ACTGGACCGATTTTTGGCGT 60.536 50.000 0.00 0.00 0.00 5.68
193 194 0.168128 CTGGACCGATTTTTGGCGTC 59.832 55.000 0.00 0.00 0.00 5.19
194 195 1.133869 GGACCGATTTTTGGCGTCG 59.866 57.895 0.00 0.00 35.29 5.12
196 197 2.202427 CCGATTTTTGGCGTCGGC 60.202 61.111 12.58 12.58 46.90 5.54
197 198 2.573167 CGATTTTTGGCGTCGGCG 60.573 61.111 14.58 4.29 41.24 6.46
198 199 2.202427 GATTTTTGGCGTCGGCGG 60.202 61.111 13.05 0.00 41.24 6.13
206 207 4.736631 GCGTCGGCGGCTGAAAAC 62.737 66.667 14.07 0.75 38.78 2.43
207 208 3.041940 CGTCGGCGGCTGAAAACT 61.042 61.111 14.07 0.00 0.00 2.66
208 209 2.861006 GTCGGCGGCTGAAAACTC 59.139 61.111 14.07 0.00 0.00 3.01
209 210 2.736995 TCGGCGGCTGAAAACTCG 60.737 61.111 9.50 0.00 0.00 4.18
210 211 3.041940 CGGCGGCTGAAAACTCGT 61.042 61.111 7.61 0.00 0.00 4.18
211 212 2.861006 GGCGGCTGAAAACTCGTC 59.139 61.111 0.00 0.00 0.00 4.20
212 213 1.668151 GGCGGCTGAAAACTCGTCT 60.668 57.895 0.00 0.00 0.00 4.18
213 214 1.493311 GCGGCTGAAAACTCGTCTG 59.507 57.895 0.00 0.00 0.00 3.51
214 215 1.901650 GCGGCTGAAAACTCGTCTGG 61.902 60.000 0.00 0.00 0.00 3.86
215 216 0.319555 CGGCTGAAAACTCGTCTGGA 60.320 55.000 0.00 0.00 0.00 3.86
224 225 2.659800 CTCGTCTGGAGGACCTTGT 58.340 57.895 0.00 0.00 41.64 3.16
225 226 0.969894 CTCGTCTGGAGGACCTTGTT 59.030 55.000 0.00 0.00 41.64 2.83
226 227 2.168496 CTCGTCTGGAGGACCTTGTTA 58.832 52.381 0.00 0.00 41.64 2.41
227 228 2.164624 CTCGTCTGGAGGACCTTGTTAG 59.835 54.545 0.00 0.00 41.64 2.34
228 229 4.987310 CTCGTCTGGAGGACCTTGTTAGG 61.987 56.522 0.00 0.00 42.20 2.69
229 230 1.555533 GTCTGGAGGACCTTGTTAGGG 59.444 57.143 0.00 0.00 46.58 3.53
230 231 1.435563 TCTGGAGGACCTTGTTAGGGA 59.564 52.381 0.00 0.00 46.58 4.20
231 232 2.158066 TCTGGAGGACCTTGTTAGGGAA 60.158 50.000 0.00 0.00 46.58 3.97
232 233 2.237392 CTGGAGGACCTTGTTAGGGAAG 59.763 54.545 0.00 0.00 46.58 3.46
233 234 2.267192 GGAGGACCTTGTTAGGGAAGT 58.733 52.381 0.00 0.00 46.58 3.01
234 235 2.027100 GGAGGACCTTGTTAGGGAAGTG 60.027 54.545 0.00 0.00 46.58 3.16
235 236 1.985895 AGGACCTTGTTAGGGAAGTGG 59.014 52.381 0.00 0.00 46.58 4.00
236 237 1.613520 GGACCTTGTTAGGGAAGTGGC 60.614 57.143 0.00 0.00 46.58 5.01
237 238 1.351350 GACCTTGTTAGGGAAGTGGCT 59.649 52.381 0.00 0.00 46.58 4.75
238 239 2.570302 GACCTTGTTAGGGAAGTGGCTA 59.430 50.000 0.00 0.00 46.58 3.93
239 240 2.572104 ACCTTGTTAGGGAAGTGGCTAG 59.428 50.000 0.00 0.00 46.58 3.42
240 241 2.838202 CCTTGTTAGGGAAGTGGCTAGA 59.162 50.000 0.00 0.00 37.94 2.43
241 242 3.118592 CCTTGTTAGGGAAGTGGCTAGAG 60.119 52.174 0.00 0.00 37.94 2.43
242 243 3.468071 TGTTAGGGAAGTGGCTAGAGA 57.532 47.619 0.00 0.00 0.00 3.10
243 244 3.995636 TGTTAGGGAAGTGGCTAGAGAT 58.004 45.455 0.00 0.00 0.00 2.75
244 245 3.706594 TGTTAGGGAAGTGGCTAGAGATG 59.293 47.826 0.00 0.00 0.00 2.90
245 246 1.127343 AGGGAAGTGGCTAGAGATGC 58.873 55.000 0.00 0.00 0.00 3.91
246 247 1.127343 GGGAAGTGGCTAGAGATGCT 58.873 55.000 0.00 0.00 0.00 3.79
247 248 1.069978 GGGAAGTGGCTAGAGATGCTC 59.930 57.143 0.00 0.00 0.00 4.26
330 331 1.913762 ACTAGGTCGCCTTGCCTGT 60.914 57.895 3.71 0.00 36.38 4.00
345 346 2.358582 TGCCTGTTCGCATGGAATATTG 59.641 45.455 0.00 0.00 36.92 1.90
405 406 3.878778 ACATCTACTGCCTCCATTTCAC 58.121 45.455 0.00 0.00 0.00 3.18
440 441 9.715119 AATTTCTAACTTTATCCTAGGCCAAAT 57.285 29.630 5.01 0.00 0.00 2.32
449 450 8.608185 TTTATCCTAGGCCAAATTTCTTTGAT 57.392 30.769 5.01 0.00 43.71 2.57
466 467 7.760131 TCTTTGATAATTAGTAAACGGTCCG 57.240 36.000 10.48 10.48 0.00 4.79
483 484 4.032445 CGGTCCGTACAAAGTGTATTGATG 59.968 45.833 2.08 0.00 35.05 3.07
556 557 6.325919 TGCACAAGTAAAGATGTTTTAGGG 57.674 37.500 0.00 0.00 0.00 3.53
564 566 3.942130 AGATGTTTTAGGGCTTTGCAC 57.058 42.857 0.00 0.00 0.00 4.57
566 568 3.256631 AGATGTTTTAGGGCTTTGCACAG 59.743 43.478 0.00 0.00 32.33 3.66
583 585 6.449635 TGCACAGAAAAACTACAACTTCAT 57.550 33.333 0.00 0.00 0.00 2.57
603 609 9.990868 ACTTCATGGGATTTTAATATATACCCC 57.009 33.333 0.00 0.00 35.48 4.95
611 617 7.989170 GGATTTTAATATATACCCCGGATTCGT 59.011 37.037 0.73 0.00 33.95 3.85
694 700 9.588096 AAAAATCTTTACCAGTACAATCTTCCT 57.412 29.630 0.00 0.00 0.00 3.36
695 701 9.588096 AAAATCTTTACCAGTACAATCTTCCTT 57.412 29.630 0.00 0.00 0.00 3.36
696 702 9.588096 AAATCTTTACCAGTACAATCTTCCTTT 57.412 29.630 0.00 0.00 0.00 3.11
697 703 8.794335 ATCTTTACCAGTACAATCTTCCTTTC 57.206 34.615 0.00 0.00 0.00 2.62
698 704 7.166167 TCTTTACCAGTACAATCTTCCTTTCC 58.834 38.462 0.00 0.00 0.00 3.13
699 705 6.697641 TTACCAGTACAATCTTCCTTTCCT 57.302 37.500 0.00 0.00 0.00 3.36
700 706 7.801893 TTACCAGTACAATCTTCCTTTCCTA 57.198 36.000 0.00 0.00 0.00 2.94
701 707 6.697641 ACCAGTACAATCTTCCTTTCCTAA 57.302 37.500 0.00 0.00 0.00 2.69
702 708 6.712276 ACCAGTACAATCTTCCTTTCCTAAG 58.288 40.000 0.00 0.00 0.00 2.18
703 709 6.272558 ACCAGTACAATCTTCCTTTCCTAAGT 59.727 38.462 0.00 0.00 0.00 2.24
704 710 7.456902 ACCAGTACAATCTTCCTTTCCTAAGTA 59.543 37.037 0.00 0.00 0.00 2.24
705 711 8.487028 CCAGTACAATCTTCCTTTCCTAAGTAT 58.513 37.037 0.00 0.00 0.00 2.12
706 712 9.535878 CAGTACAATCTTCCTTTCCTAAGTATC 57.464 37.037 0.00 0.00 0.00 2.24
707 713 8.706521 AGTACAATCTTCCTTTCCTAAGTATCC 58.293 37.037 0.00 0.00 0.00 2.59
708 714 7.757242 ACAATCTTCCTTTCCTAAGTATCCT 57.243 36.000 0.00 0.00 0.00 3.24
709 715 7.569240 ACAATCTTCCTTTCCTAAGTATCCTG 58.431 38.462 0.00 0.00 0.00 3.86
710 716 7.403231 ACAATCTTCCTTTCCTAAGTATCCTGA 59.597 37.037 0.00 0.00 0.00 3.86
711 717 7.996758 ATCTTCCTTTCCTAAGTATCCTGAA 57.003 36.000 0.00 0.00 0.00 3.02
730 736 6.200665 TCCTGAAAATTTTGAGCACATTTTCG 59.799 34.615 8.47 9.59 41.49 3.46
754 760 2.952978 AGCCGTTTGTATGTTTGGACAA 59.047 40.909 0.00 0.00 39.66 3.18
759 765 6.238239 GCCGTTTGTATGTTTGGACAATTTTT 60.238 34.615 0.00 0.00 39.66 1.94
760 766 7.042658 GCCGTTTGTATGTTTGGACAATTTTTA 60.043 33.333 0.00 0.00 39.66 1.52
839 845 4.929146 ACCCAGTTCACCTAAGCTAAAT 57.071 40.909 0.00 0.00 0.00 1.40
840 846 6.177610 CAACCCAGTTCACCTAAGCTAAATA 58.822 40.000 0.00 0.00 0.00 1.40
867 899 4.875544 TGAAGAACTGTTTCAAAGTCCG 57.124 40.909 0.00 0.00 33.72 4.79
904 1051 6.982899 ACTTTCCCTCTCCTATCTAGTACAA 58.017 40.000 0.00 0.00 0.00 2.41
915 1062 7.887381 TCCTATCTAGTACAAAGCTATCTTGC 58.113 38.462 0.00 0.00 31.78 4.01
918 1065 6.531503 TCTAGTACAAAGCTATCTTGCTGT 57.468 37.500 0.00 0.00 43.24 4.40
957 1104 4.456911 AGCTATCTTGTTGTTGGATGTGTG 59.543 41.667 0.00 0.00 0.00 3.82
958 1105 4.216257 GCTATCTTGTTGTTGGATGTGTGT 59.784 41.667 0.00 0.00 0.00 3.72
959 1106 5.411361 GCTATCTTGTTGTTGGATGTGTGTA 59.589 40.000 0.00 0.00 0.00 2.90
960 1107 6.094048 GCTATCTTGTTGTTGGATGTGTGTAT 59.906 38.462 0.00 0.00 0.00 2.29
1067 1226 1.007580 GCCTTGTTAGCGACCTTAGC 58.992 55.000 0.00 0.00 0.00 3.09
1068 1227 1.674817 GCCTTGTTAGCGACCTTAGCA 60.675 52.381 0.00 0.00 37.01 3.49
1069 1228 2.000447 CCTTGTTAGCGACCTTAGCAC 59.000 52.381 0.00 0.00 37.01 4.40
1070 1229 2.353803 CCTTGTTAGCGACCTTAGCACT 60.354 50.000 0.00 0.00 37.01 4.40
1071 1230 3.326747 CTTGTTAGCGACCTTAGCACTT 58.673 45.455 0.00 0.00 37.01 3.16
1072 1231 3.396260 TGTTAGCGACCTTAGCACTTT 57.604 42.857 0.00 0.00 37.01 2.66
1073 1232 4.524316 TGTTAGCGACCTTAGCACTTTA 57.476 40.909 0.00 0.00 37.01 1.85
1074 1233 4.491676 TGTTAGCGACCTTAGCACTTTAG 58.508 43.478 0.00 0.00 37.01 1.85
1078 1237 2.931320 GCGACCTTAGCACTTTAGCAGT 60.931 50.000 0.00 0.00 36.85 4.40
1092 1251 2.731571 GCAGTACCAGGCGGGATGA 61.732 63.158 11.67 0.00 41.15 2.92
1173 1332 2.022195 AGACAATCCAGATGCATGCAC 58.978 47.619 25.37 16.77 0.00 4.57
1188 1347 4.155644 TGCATGCACGAATATTTCAACTCA 59.844 37.500 18.46 0.00 0.00 3.41
1214 1373 6.376864 TGGCCCCAATATATGTAATTGATTCG 59.623 38.462 0.00 0.00 36.61 3.34
1224 1383 6.683974 ATGTAATTGATTCGTCAAGGGAAG 57.316 37.500 0.00 0.00 32.69 3.46
1225 1384 5.800296 TGTAATTGATTCGTCAAGGGAAGA 58.200 37.500 0.00 0.00 32.69 2.87
1226 1385 6.234920 TGTAATTGATTCGTCAAGGGAAGAA 58.765 36.000 0.00 0.00 43.85 2.52
1244 1406 6.381420 GGGAAGAATGGAGATCGAGGATTATA 59.619 42.308 0.00 0.00 0.00 0.98
1271 1452 0.333993 AGCAAAGATGGGCTGGTGAT 59.666 50.000 0.00 0.00 39.30 3.06
1272 1453 0.458669 GCAAAGATGGGCTGGTGATG 59.541 55.000 0.00 0.00 0.00 3.07
1332 1513 0.462047 CCAAGGATACAGTGACGGCC 60.462 60.000 0.00 0.00 41.41 6.13
1477 1658 1.827344 TCGTCATCATGAAGCTCACCT 59.173 47.619 0.00 0.00 0.00 4.00
1577 1758 3.379445 GACCGACCTCAAGGCCGA 61.379 66.667 6.31 0.00 44.10 5.54
1630 1811 0.460311 CATAAAGGCCGGTCTCGAGT 59.540 55.000 10.20 0.00 39.00 4.18
1698 1879 2.025981 CCCCAACATCTTCCTCATGTCA 60.026 50.000 0.00 0.00 33.12 3.58
1735 1916 4.097361 GCGACCCCAGGGAAGTCC 62.097 72.222 7.25 0.00 38.96 3.85
2013 2203 0.446616 CGATCACCGACGACAAGAGA 59.553 55.000 0.00 0.00 41.76 3.10
2082 2272 1.227853 GGTGGCCGTCAACTTCACT 60.228 57.895 0.00 0.00 0.00 3.41
2121 2311 2.396955 CGAGGAGTACGACGCCACT 61.397 63.158 2.59 2.59 40.81 4.00
2216 2412 2.943978 CGAACCCAAGCTCTCCCGT 61.944 63.158 0.00 0.00 0.00 5.28
2217 2413 1.601419 CGAACCCAAGCTCTCCCGTA 61.601 60.000 0.00 0.00 0.00 4.02
2244 2446 2.268802 TGCTGTCGAGAACCGCTCT 61.269 57.895 0.00 0.00 41.66 4.09
2328 2530 0.324738 ACGATGAGAGGCTGGAGGAA 60.325 55.000 0.00 0.00 0.00 3.36
2339 2541 4.214327 GGAGGAAGCGCGGGAGAG 62.214 72.222 8.83 0.00 0.00 3.20
2385 2587 2.103042 GGACATCGTGCTGCTGGAC 61.103 63.158 5.11 5.11 0.00 4.02
2386 2588 2.046892 ACATCGTGCTGCTGGACC 60.047 61.111 9.59 0.00 0.00 4.46
2387 2589 2.267006 CATCGTGCTGCTGGACCT 59.733 61.111 9.59 0.00 0.00 3.85
2388 2590 2.104859 CATCGTGCTGCTGGACCTG 61.105 63.158 9.59 4.20 0.00 4.00
2464 2666 0.820226 CTTCATGGAGTCGCAGGAGA 59.180 55.000 0.00 0.00 0.00 3.71
2635 2837 1.677552 GAGAACCCAAAGGAGCCGA 59.322 57.895 0.00 0.00 36.73 5.54
2673 2875 0.733729 ACGTCGAGGGAGAGATTTCG 59.266 55.000 10.27 0.00 34.56 3.46
2679 2884 4.799428 GTCGAGGGAGAGATTTCGTAAAAG 59.201 45.833 0.00 0.00 34.83 2.27
2693 2898 2.030274 CGTAAAAGAAAGCCACCCCTTG 60.030 50.000 0.00 0.00 0.00 3.61
2746 2956 6.917477 ACGGCAGCAACAATTAATTATGTATG 59.083 34.615 0.00 7.84 0.00 2.39
2788 2998 4.042809 TCCTTACTTTCCCATGCTTTCTCA 59.957 41.667 0.00 0.00 0.00 3.27
2790 3000 5.067023 CCTTACTTTCCCATGCTTTCTCATC 59.933 44.000 0.00 0.00 0.00 2.92
2791 3001 3.359950 ACTTTCCCATGCTTTCTCATCC 58.640 45.455 0.00 0.00 0.00 3.51
2793 3003 2.723322 TCCCATGCTTTCTCATCCTG 57.277 50.000 0.00 0.00 0.00 3.86
2797 3007 4.166725 TCCCATGCTTTCTCATCCTGTAAT 59.833 41.667 0.00 0.00 0.00 1.89
2798 3008 4.277672 CCCATGCTTTCTCATCCTGTAATG 59.722 45.833 0.00 0.00 0.00 1.90
2800 3010 6.057533 CCATGCTTTCTCATCCTGTAATGTA 58.942 40.000 0.00 0.00 0.00 2.29
2801 3011 6.543465 CCATGCTTTCTCATCCTGTAATGTAA 59.457 38.462 0.00 0.00 0.00 2.41
2802 3012 7.230108 CCATGCTTTCTCATCCTGTAATGTAAT 59.770 37.037 0.00 0.00 0.00 1.89
2803 3013 9.276590 CATGCTTTCTCATCCTGTAATGTAATA 57.723 33.333 0.00 0.00 0.00 0.98
2804 3014 9.851686 ATGCTTTCTCATCCTGTAATGTAATAA 57.148 29.630 0.00 0.00 0.00 1.40
2805 3015 9.679661 TGCTTTCTCATCCTGTAATGTAATAAA 57.320 29.630 0.00 0.00 0.00 1.40
2806 3016 9.937175 GCTTTCTCATCCTGTAATGTAATAAAC 57.063 33.333 0.00 0.00 0.00 2.01
2830 3040 6.533723 ACGCATGTAATTTCTCGAGTTTGATA 59.466 34.615 13.13 0.00 0.00 2.15
2831 3041 7.059817 CGCATGTAATTTCTCGAGTTTGATAG 58.940 38.462 13.13 0.00 0.00 2.08
2832 3042 7.254117 CGCATGTAATTTCTCGAGTTTGATAGT 60.254 37.037 13.13 0.00 0.00 2.12
2833 3043 8.391106 GCATGTAATTTCTCGAGTTTGATAGTT 58.609 33.333 13.13 0.90 0.00 2.24
2834 3044 9.694520 CATGTAATTTCTCGAGTTTGATAGTTG 57.305 33.333 13.13 0.00 0.00 3.16
2835 3045 7.739295 TGTAATTTCTCGAGTTTGATAGTTGC 58.261 34.615 13.13 2.61 0.00 4.17
2836 3046 6.801539 AATTTCTCGAGTTTGATAGTTGCA 57.198 33.333 13.13 0.00 0.00 4.08
2837 3047 5.591643 TTTCTCGAGTTTGATAGTTGCAC 57.408 39.130 13.13 0.00 0.00 4.57
2838 3048 3.242518 TCTCGAGTTTGATAGTTGCACG 58.757 45.455 13.13 0.00 0.00 5.34
2839 3049 1.724623 TCGAGTTTGATAGTTGCACGC 59.275 47.619 0.00 0.00 0.00 5.34
2840 3050 1.201921 CGAGTTTGATAGTTGCACGCC 60.202 52.381 0.00 0.00 0.00 5.68
2841 3051 1.804151 GAGTTTGATAGTTGCACGCCA 59.196 47.619 0.00 0.00 0.00 5.69
2842 3052 1.806542 AGTTTGATAGTTGCACGCCAG 59.193 47.619 0.00 0.00 0.00 4.85
2843 3053 1.535462 GTTTGATAGTTGCACGCCAGT 59.465 47.619 0.00 0.00 0.00 4.00
2844 3054 1.438651 TTGATAGTTGCACGCCAGTC 58.561 50.000 0.00 0.00 0.00 3.51
2845 3055 0.735978 TGATAGTTGCACGCCAGTCG 60.736 55.000 0.00 0.00 45.38 4.18
2846 3056 0.457853 GATAGTTGCACGCCAGTCGA 60.458 55.000 0.00 0.00 41.67 4.20
2847 3057 0.736325 ATAGTTGCACGCCAGTCGAC 60.736 55.000 7.70 7.70 41.67 4.20
2848 3058 1.802337 TAGTTGCACGCCAGTCGACT 61.802 55.000 13.58 13.58 41.67 4.18
2849 3059 2.661537 TTGCACGCCAGTCGACTG 60.662 61.111 33.87 33.87 43.40 3.51
2850 3060 3.145422 TTGCACGCCAGTCGACTGA 62.145 57.895 40.21 20.88 46.59 3.41
2851 3061 2.355837 GCACGCCAGTCGACTGAA 60.356 61.111 40.21 0.00 46.59 3.02
2852 3062 2.375766 GCACGCCAGTCGACTGAAG 61.376 63.158 40.21 32.83 46.59 3.02
2853 3063 1.285950 CACGCCAGTCGACTGAAGA 59.714 57.895 40.21 0.00 46.59 2.87
2854 3064 0.318699 CACGCCAGTCGACTGAAGAA 60.319 55.000 40.21 0.00 46.59 2.52
2855 3065 0.039074 ACGCCAGTCGACTGAAGAAG 60.039 55.000 40.21 26.04 46.59 2.85
2856 3066 0.241213 CGCCAGTCGACTGAAGAAGA 59.759 55.000 40.21 0.00 46.59 2.87
2857 3067 1.135257 CGCCAGTCGACTGAAGAAGAT 60.135 52.381 40.21 4.63 46.59 2.40
2858 3068 2.535331 GCCAGTCGACTGAAGAAGATC 58.465 52.381 40.21 17.42 46.59 2.75
2859 3069 2.791567 CCAGTCGACTGAAGAAGATCG 58.208 52.381 40.21 20.08 46.59 3.69
2860 3070 2.420372 CCAGTCGACTGAAGAAGATCGA 59.580 50.000 40.21 0.00 46.59 3.59
2861 3071 3.486708 CCAGTCGACTGAAGAAGATCGAG 60.487 52.174 40.21 18.93 46.59 4.04
2862 3072 2.096819 AGTCGACTGAAGAAGATCGAGC 59.903 50.000 19.30 0.00 38.35 5.03
2863 3073 1.062733 TCGACTGAAGAAGATCGAGCG 59.937 52.381 0.00 0.00 35.18 5.03
2864 3074 1.202087 CGACTGAAGAAGATCGAGCGT 60.202 52.381 0.00 0.00 33.78 5.07
2865 3075 2.030579 CGACTGAAGAAGATCGAGCGTA 59.969 50.000 0.00 0.00 33.78 4.42
2866 3076 3.303461 CGACTGAAGAAGATCGAGCGTAT 60.303 47.826 0.00 0.00 33.78 3.06
2867 3077 3.958704 ACTGAAGAAGATCGAGCGTATG 58.041 45.455 0.00 0.00 0.00 2.39
2868 3078 3.628032 ACTGAAGAAGATCGAGCGTATGA 59.372 43.478 0.00 0.00 0.00 2.15
2869 3079 4.277174 ACTGAAGAAGATCGAGCGTATGAT 59.723 41.667 0.00 0.00 0.00 2.45
2870 3080 4.788690 TGAAGAAGATCGAGCGTATGATC 58.211 43.478 0.00 5.20 41.02 2.92
2876 3086 4.153958 GATCGAGCGTATGATCTGTTCT 57.846 45.455 0.00 0.00 38.34 3.01
2877 3087 3.610786 TCGAGCGTATGATCTGTTCTC 57.389 47.619 0.00 0.00 0.00 2.87
2878 3088 2.290916 TCGAGCGTATGATCTGTTCTCC 59.709 50.000 0.00 0.00 0.00 3.71
2879 3089 2.033424 CGAGCGTATGATCTGTTCTCCA 59.967 50.000 0.00 0.00 0.00 3.86
2880 3090 3.637432 GAGCGTATGATCTGTTCTCCAG 58.363 50.000 0.00 0.00 42.97 3.86
2881 3091 2.363680 AGCGTATGATCTGTTCTCCAGG 59.636 50.000 0.00 0.00 41.83 4.45
2882 3092 2.362397 GCGTATGATCTGTTCTCCAGGA 59.638 50.000 0.00 0.00 41.83 3.86
2883 3093 3.551863 GCGTATGATCTGTTCTCCAGGAG 60.552 52.174 10.70 10.70 41.83 3.69
2884 3094 3.634448 CGTATGATCTGTTCTCCAGGAGT 59.366 47.826 16.65 0.00 41.83 3.85
2885 3095 4.098654 CGTATGATCTGTTCTCCAGGAGTT 59.901 45.833 16.65 0.00 41.83 3.01
2886 3096 5.394663 CGTATGATCTGTTCTCCAGGAGTTT 60.395 44.000 16.65 0.00 41.83 2.66
2887 3097 4.277515 TGATCTGTTCTCCAGGAGTTTG 57.722 45.455 16.65 5.88 41.83 2.93
2888 3098 3.903714 TGATCTGTTCTCCAGGAGTTTGA 59.096 43.478 16.65 10.70 41.83 2.69
2889 3099 3.753294 TCTGTTCTCCAGGAGTTTGAC 57.247 47.619 16.65 11.19 41.83 3.18
2890 3100 2.035961 TCTGTTCTCCAGGAGTTTGACG 59.964 50.000 16.65 7.94 41.83 4.35
2891 3101 1.070134 TGTTCTCCAGGAGTTTGACGG 59.930 52.381 16.65 0.00 0.00 4.79
2892 3102 1.070289 GTTCTCCAGGAGTTTGACGGT 59.930 52.381 16.65 0.00 0.00 4.83
2893 3103 1.420430 TCTCCAGGAGTTTGACGGTT 58.580 50.000 16.65 0.00 0.00 4.44
2894 3104 1.070134 TCTCCAGGAGTTTGACGGTTG 59.930 52.381 16.65 0.00 0.00 3.77
2895 3105 0.107831 TCCAGGAGTTTGACGGTTGG 59.892 55.000 0.00 0.00 0.00 3.77
2896 3106 0.107831 CCAGGAGTTTGACGGTTGGA 59.892 55.000 0.00 0.00 0.00 3.53
2897 3107 1.512926 CAGGAGTTTGACGGTTGGAG 58.487 55.000 0.00 0.00 0.00 3.86
2898 3108 0.396811 AGGAGTTTGACGGTTGGAGG 59.603 55.000 0.00 0.00 0.00 4.30
2899 3109 0.395312 GGAGTTTGACGGTTGGAGGA 59.605 55.000 0.00 0.00 0.00 3.71
2900 3110 1.202722 GGAGTTTGACGGTTGGAGGAA 60.203 52.381 0.00 0.00 0.00 3.36
2901 3111 2.143925 GAGTTTGACGGTTGGAGGAAG 58.856 52.381 0.00 0.00 0.00 3.46
2902 3112 1.766496 AGTTTGACGGTTGGAGGAAGA 59.234 47.619 0.00 0.00 0.00 2.87
2903 3113 2.143925 GTTTGACGGTTGGAGGAAGAG 58.856 52.381 0.00 0.00 0.00 2.85
2904 3114 0.685097 TTGACGGTTGGAGGAAGAGG 59.315 55.000 0.00 0.00 0.00 3.69
2905 3115 0.178944 TGACGGTTGGAGGAAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
2906 3116 0.246910 GACGGTTGGAGGAAGAGGAC 59.753 60.000 0.00 0.00 0.00 3.85
2907 3117 1.215647 CGGTTGGAGGAAGAGGACG 59.784 63.158 0.00 0.00 0.00 4.79
2908 3118 1.533469 CGGTTGGAGGAAGAGGACGT 61.533 60.000 0.00 0.00 0.00 4.34
2909 3119 0.037232 GGTTGGAGGAAGAGGACGTG 60.037 60.000 0.00 0.00 0.00 4.49
2910 3120 0.966920 GTTGGAGGAAGAGGACGTGA 59.033 55.000 0.00 0.00 0.00 4.35
2911 3121 1.067495 GTTGGAGGAAGAGGACGTGAG 60.067 57.143 0.00 0.00 0.00 3.51
2912 3122 1.251527 TGGAGGAAGAGGACGTGAGC 61.252 60.000 0.00 0.00 0.00 4.26
2913 3123 1.251527 GGAGGAAGAGGACGTGAGCA 61.252 60.000 0.00 0.00 0.00 4.26
2914 3124 0.172352 GAGGAAGAGGACGTGAGCAG 59.828 60.000 0.00 0.00 0.00 4.24
2915 3125 0.251386 AGGAAGAGGACGTGAGCAGA 60.251 55.000 0.00 0.00 0.00 4.26
2916 3126 0.603569 GGAAGAGGACGTGAGCAGAA 59.396 55.000 0.00 0.00 0.00 3.02
2917 3127 1.670380 GGAAGAGGACGTGAGCAGAAC 60.670 57.143 0.00 0.00 0.00 3.01
2918 3128 0.318762 AAGAGGACGTGAGCAGAACC 59.681 55.000 0.00 0.00 0.00 3.62
2919 3129 1.444553 GAGGACGTGAGCAGAACCG 60.445 63.158 0.00 0.00 0.00 4.44
2920 3130 2.143594 GAGGACGTGAGCAGAACCGT 62.144 60.000 0.00 0.00 36.04 4.83
2921 3131 1.300697 GGACGTGAGCAGAACCGTT 60.301 57.895 0.00 0.00 33.03 4.44
2922 3132 1.282930 GGACGTGAGCAGAACCGTTC 61.283 60.000 2.81 2.81 33.03 3.95
2923 3133 0.318784 GACGTGAGCAGAACCGTTCT 60.319 55.000 8.03 8.03 41.70 3.01
2924 3134 0.104304 ACGTGAGCAGAACCGTTCTT 59.896 50.000 11.24 0.00 38.11 2.52
2925 3135 1.217882 CGTGAGCAGAACCGTTCTTT 58.782 50.000 11.24 3.09 38.11 2.52
2926 3136 1.597663 CGTGAGCAGAACCGTTCTTTT 59.402 47.619 11.24 2.73 38.11 2.27
2927 3137 2.599848 CGTGAGCAGAACCGTTCTTTTG 60.600 50.000 11.24 3.07 38.11 2.44
2928 3138 2.354821 GTGAGCAGAACCGTTCTTTTGT 59.645 45.455 11.24 0.00 38.11 2.83
2929 3139 3.013921 TGAGCAGAACCGTTCTTTTGTT 58.986 40.909 11.24 0.00 38.11 2.83
2930 3140 4.034742 GTGAGCAGAACCGTTCTTTTGTTA 59.965 41.667 11.24 0.00 38.11 2.41
2931 3141 4.819630 TGAGCAGAACCGTTCTTTTGTTAT 59.180 37.500 11.24 0.00 38.11 1.89
2932 3142 5.049680 TGAGCAGAACCGTTCTTTTGTTATC 60.050 40.000 11.24 3.42 38.11 1.75
2933 3143 4.215613 AGCAGAACCGTTCTTTTGTTATCC 59.784 41.667 11.24 0.00 38.11 2.59
2934 3144 4.023536 GCAGAACCGTTCTTTTGTTATCCA 60.024 41.667 11.24 0.00 38.11 3.41
2935 3145 5.506649 GCAGAACCGTTCTTTTGTTATCCAA 60.507 40.000 11.24 0.00 38.11 3.53
2936 3146 5.912955 CAGAACCGTTCTTTTGTTATCCAAC 59.087 40.000 11.24 0.00 38.11 3.77
2937 3147 4.477302 ACCGTTCTTTTGTTATCCAACG 57.523 40.909 0.00 0.00 37.48 4.10
2939 3149 3.231160 CGTTCTTTTGTTATCCAACGGC 58.769 45.455 0.00 0.00 37.48 5.68
2940 3150 3.058501 CGTTCTTTTGTTATCCAACGGCT 60.059 43.478 0.00 0.00 37.48 5.52
2941 3151 4.473199 GTTCTTTTGTTATCCAACGGCTC 58.527 43.478 0.00 0.00 37.48 4.70
2942 3152 3.745799 TCTTTTGTTATCCAACGGCTCA 58.254 40.909 0.00 0.00 37.48 4.26
2943 3153 3.751175 TCTTTTGTTATCCAACGGCTCAG 59.249 43.478 0.00 0.00 37.48 3.35
2944 3154 3.410631 TTTGTTATCCAACGGCTCAGA 57.589 42.857 0.00 0.00 37.48 3.27
2945 3155 3.627395 TTGTTATCCAACGGCTCAGAT 57.373 42.857 0.00 0.00 37.48 2.90
2946 3156 3.627395 TGTTATCCAACGGCTCAGATT 57.373 42.857 0.00 0.00 37.48 2.40
2947 3157 3.270027 TGTTATCCAACGGCTCAGATTG 58.730 45.455 0.00 0.00 37.48 2.67
2948 3158 3.055458 TGTTATCCAACGGCTCAGATTGA 60.055 43.478 0.00 0.00 37.48 2.57
2949 3159 4.130118 GTTATCCAACGGCTCAGATTGAT 58.870 43.478 0.00 0.00 0.00 2.57
2950 3160 2.315925 TCCAACGGCTCAGATTGATC 57.684 50.000 0.00 0.00 0.00 2.92
2951 3161 1.134401 TCCAACGGCTCAGATTGATCC 60.134 52.381 0.00 0.00 29.67 3.36
2952 3162 1.134280 CCAACGGCTCAGATTGATCCT 60.134 52.381 0.00 0.00 30.78 3.24
2953 3163 2.636830 CAACGGCTCAGATTGATCCTT 58.363 47.619 0.00 0.00 30.78 3.36
2954 3164 2.322355 ACGGCTCAGATTGATCCTTG 57.678 50.000 0.00 0.00 30.78 3.61
2955 3165 0.942962 CGGCTCAGATTGATCCTTGC 59.057 55.000 0.00 0.00 30.78 4.01
2956 3166 1.744798 CGGCTCAGATTGATCCTTGCA 60.745 52.381 0.00 0.00 30.78 4.08
2957 3167 2.372264 GGCTCAGATTGATCCTTGCAA 58.628 47.619 0.00 0.00 30.36 4.08
2958 3168 2.756760 GGCTCAGATTGATCCTTGCAAA 59.243 45.455 0.00 0.00 30.36 3.68
2959 3169 3.383825 GGCTCAGATTGATCCTTGCAAAT 59.616 43.478 0.00 0.00 30.36 2.32
2960 3170 4.499357 GGCTCAGATTGATCCTTGCAAATC 60.499 45.833 0.00 2.09 30.36 2.17
2961 3171 4.788840 GCTCAGATTGATCCTTGCAAATCG 60.789 45.833 0.00 0.00 0.00 3.34
2962 3172 4.516323 TCAGATTGATCCTTGCAAATCGA 58.484 39.130 0.00 1.84 0.00 3.59
2963 3173 4.333649 TCAGATTGATCCTTGCAAATCGAC 59.666 41.667 0.00 0.00 0.00 4.20
2964 3174 4.334759 CAGATTGATCCTTGCAAATCGACT 59.665 41.667 0.00 0.47 0.00 4.18
2965 3175 5.525012 CAGATTGATCCTTGCAAATCGACTA 59.475 40.000 0.00 0.00 0.00 2.59
2966 3176 6.037500 CAGATTGATCCTTGCAAATCGACTAA 59.962 38.462 0.00 0.00 0.00 2.24
2967 3177 5.545658 TTGATCCTTGCAAATCGACTAAC 57.454 39.130 0.00 0.00 0.00 2.34
2968 3178 3.938963 TGATCCTTGCAAATCGACTAACC 59.061 43.478 0.00 0.00 0.00 2.85
2969 3179 2.706890 TCCTTGCAAATCGACTAACCC 58.293 47.619 0.00 0.00 0.00 4.11
2970 3180 2.039216 TCCTTGCAAATCGACTAACCCA 59.961 45.455 0.00 0.00 0.00 4.51
2971 3181 2.817258 CCTTGCAAATCGACTAACCCAA 59.183 45.455 0.00 0.00 0.00 4.12
2972 3182 3.443681 CCTTGCAAATCGACTAACCCAAT 59.556 43.478 0.00 0.00 0.00 3.16
2973 3183 4.082245 CCTTGCAAATCGACTAACCCAATT 60.082 41.667 0.00 0.00 0.00 2.32
2974 3184 4.695217 TGCAAATCGACTAACCCAATTC 57.305 40.909 0.00 0.00 0.00 2.17
2975 3185 4.075682 TGCAAATCGACTAACCCAATTCA 58.924 39.130 0.00 0.00 0.00 2.57
2976 3186 4.704540 TGCAAATCGACTAACCCAATTCAT 59.295 37.500 0.00 0.00 0.00 2.57
2977 3187 5.036737 GCAAATCGACTAACCCAATTCATG 58.963 41.667 0.00 0.00 0.00 3.07
2978 3188 5.393027 GCAAATCGACTAACCCAATTCATGT 60.393 40.000 0.00 0.00 0.00 3.21
2979 3189 6.620678 CAAATCGACTAACCCAATTCATGTT 58.379 36.000 0.00 0.00 0.00 2.71
2980 3190 6.834168 AATCGACTAACCCAATTCATGTTT 57.166 33.333 0.00 0.00 0.00 2.83
2981 3191 6.834168 ATCGACTAACCCAATTCATGTTTT 57.166 33.333 0.00 0.00 0.00 2.43
2982 3192 6.249035 TCGACTAACCCAATTCATGTTTTC 57.751 37.500 0.00 0.00 0.00 2.29
2983 3193 5.765677 TCGACTAACCCAATTCATGTTTTCA 59.234 36.000 0.00 0.00 0.00 2.69
2984 3194 6.072728 TCGACTAACCCAATTCATGTTTTCAG 60.073 38.462 0.00 0.00 0.00 3.02
2985 3195 6.293955 CGACTAACCCAATTCATGTTTTCAGT 60.294 38.462 0.00 0.00 0.00 3.41
2986 3196 6.981722 ACTAACCCAATTCATGTTTTCAGTC 58.018 36.000 0.00 0.00 0.00 3.51
2987 3197 4.503741 ACCCAATTCATGTTTTCAGTCG 57.496 40.909 0.00 0.00 0.00 4.18
2988 3198 4.141287 ACCCAATTCATGTTTTCAGTCGA 58.859 39.130 0.00 0.00 0.00 4.20
2989 3199 4.023193 ACCCAATTCATGTTTTCAGTCGAC 60.023 41.667 7.70 7.70 0.00 4.20
2990 3200 4.216257 CCCAATTCATGTTTTCAGTCGACT 59.784 41.667 13.58 13.58 0.00 4.18
2991 3201 5.278463 CCCAATTCATGTTTTCAGTCGACTT 60.278 40.000 17.26 0.00 0.00 3.01
2992 3202 5.626543 CCAATTCATGTTTTCAGTCGACTTG 59.373 40.000 17.26 10.14 0.00 3.16
2997 3207 3.006940 TGTTTTCAGTCGACTTGCAGTT 58.993 40.909 17.26 0.00 0.00 3.16
3122 3335 1.003972 CCAACACTAACGCACACACAG 60.004 52.381 0.00 0.00 0.00 3.66
3132 3346 3.146066 ACGCACACACAGAAAATACCAT 58.854 40.909 0.00 0.00 0.00 3.55
3211 3433 1.201647 CCCTGAAGCGTTCTAAGTCGA 59.798 52.381 0.00 0.00 0.00 4.20
3215 3437 4.416620 CTGAAGCGTTCTAAGTCGAGATT 58.583 43.478 0.00 0.00 0.00 2.40
3228 3518 2.221055 GTCGAGATTGACAAACAACGCT 59.779 45.455 0.00 0.00 41.52 5.07
3284 3574 1.118356 TGGGACCAACCACCAAATGC 61.118 55.000 0.00 0.00 41.20 3.56
3334 3624 2.027314 CCGAGCATCTCCGAGCAG 59.973 66.667 0.00 0.00 0.00 4.24
3348 3638 0.039708 GAGCAGTGCCTTCAACAAGC 60.040 55.000 12.58 0.00 0.00 4.01
3355 3645 2.484264 GTGCCTTCAACAAGCTAACGAT 59.516 45.455 0.00 0.00 0.00 3.73
3394 3687 1.416401 CCAGTATAACCGACATGGGCT 59.584 52.381 0.00 0.00 44.64 5.19
3398 3691 3.391296 AGTATAACCGACATGGGCTTGAT 59.609 43.478 0.00 0.00 44.64 2.57
3466 3760 2.029649 ACCATCAAAGTCAAGCATGTGC 60.030 45.455 0.00 0.00 42.49 4.57
3503 3797 1.409064 CCACGATCCTAGCAGCTACAA 59.591 52.381 0.00 0.00 0.00 2.41
3554 3849 1.220749 GCAACCATACCCTCTGCGA 59.779 57.895 0.00 0.00 0.00 5.10
3580 3876 6.101650 AGACATCGTCCATAGATTGCATAA 57.898 37.500 0.00 0.00 32.18 1.90
3591 3887 6.037062 CCATAGATTGCATAACACTGTCGAAA 59.963 38.462 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.172803 TCGCTTCTTCCCGCTTAGTC 59.827 55.000 0.00 0.00 0.00 2.59
1 2 0.173708 CTCGCTTCTTCCCGCTTAGT 59.826 55.000 0.00 0.00 0.00 2.24
2 3 0.456221 TCTCGCTTCTTCCCGCTTAG 59.544 55.000 0.00 0.00 0.00 2.18
4 5 1.079750 GTCTCGCTTCTTCCCGCTT 60.080 57.895 0.00 0.00 0.00 4.68
5 6 2.574399 GTCTCGCTTCTTCCCGCT 59.426 61.111 0.00 0.00 0.00 5.52
6 7 2.881352 CGTCTCGCTTCTTCCCGC 60.881 66.667 0.00 0.00 0.00 6.13
7 8 1.226435 CTCGTCTCGCTTCTTCCCG 60.226 63.158 0.00 0.00 0.00 5.14
8 9 0.179158 GACTCGTCTCGCTTCTTCCC 60.179 60.000 0.00 0.00 0.00 3.97
9 10 0.521659 CGACTCGTCTCGCTTCTTCC 60.522 60.000 0.00 0.00 0.00 3.46
10 11 2.919286 CGACTCGTCTCGCTTCTTC 58.081 57.895 0.00 0.00 0.00 2.87
17 18 0.247735 CTTACCAGCGACTCGTCTCG 60.248 60.000 0.00 0.88 36.70 4.04
18 19 0.099082 CCTTACCAGCGACTCGTCTC 59.901 60.000 0.00 0.00 0.00 3.36
19 20 0.322277 TCCTTACCAGCGACTCGTCT 60.322 55.000 0.00 0.00 0.00 4.18
20 21 0.099082 CTCCTTACCAGCGACTCGTC 59.901 60.000 0.00 0.00 0.00 4.20
21 22 1.313812 CCTCCTTACCAGCGACTCGT 61.314 60.000 0.00 0.00 0.00 4.18
22 23 1.433879 CCTCCTTACCAGCGACTCG 59.566 63.158 0.00 0.00 0.00 4.18
23 24 1.817209 CCCTCCTTACCAGCGACTC 59.183 63.158 0.00 0.00 0.00 3.36
24 25 2.359967 GCCCTCCTTACCAGCGACT 61.360 63.158 0.00 0.00 0.00 4.18
25 26 2.187163 GCCCTCCTTACCAGCGAC 59.813 66.667 0.00 0.00 0.00 5.19
26 27 2.284331 TGCCCTCCTTACCAGCGA 60.284 61.111 0.00 0.00 0.00 4.93
27 28 2.125106 GTGCCCTCCTTACCAGCG 60.125 66.667 0.00 0.00 0.00 5.18
28 29 2.125106 CGTGCCCTCCTTACCAGC 60.125 66.667 0.00 0.00 0.00 4.85
29 30 2.125106 GCGTGCCCTCCTTACCAG 60.125 66.667 0.00 0.00 0.00 4.00
30 31 4.077184 CGCGTGCCCTCCTTACCA 62.077 66.667 0.00 0.00 0.00 3.25
31 32 4.832608 CCGCGTGCCCTCCTTACC 62.833 72.222 4.92 0.00 0.00 2.85
102 103 4.029809 GACCCAACCCGACCCCTG 62.030 72.222 0.00 0.00 0.00 4.45
103 104 4.265507 AGACCCAACCCGACCCCT 62.266 66.667 0.00 0.00 0.00 4.79
104 105 4.029809 CAGACCCAACCCGACCCC 62.030 72.222 0.00 0.00 0.00 4.95
105 106 4.717313 GCAGACCCAACCCGACCC 62.717 72.222 0.00 0.00 0.00 4.46
106 107 4.717313 GGCAGACCCAACCCGACC 62.717 72.222 0.00 0.00 0.00 4.79
115 116 4.778143 ATTGGCGTCGGCAGACCC 62.778 66.667 21.36 13.29 44.28 4.46
116 117 2.253414 GAAATTGGCGTCGGCAGACC 62.253 60.000 21.36 8.85 44.28 3.85
117 118 1.134694 GAAATTGGCGTCGGCAGAC 59.865 57.895 21.36 6.95 42.47 3.51
118 119 0.886938 TTGAAATTGGCGTCGGCAGA 60.887 50.000 21.36 12.96 42.47 4.26
119 120 0.729140 GTTGAAATTGGCGTCGGCAG 60.729 55.000 21.36 0.00 42.47 4.85
120 121 1.284408 GTTGAAATTGGCGTCGGCA 59.716 52.632 18.58 18.58 42.47 5.69
121 122 1.443702 GGTTGAAATTGGCGTCGGC 60.444 57.895 12.58 12.58 38.90 5.54
122 123 1.211709 GGGTTGAAATTGGCGTCGG 59.788 57.895 0.00 0.00 0.00 4.79
123 124 1.154301 CGGGTTGAAATTGGCGTCG 60.154 57.895 0.00 0.00 0.00 5.12
124 125 0.594110 TTCGGGTTGAAATTGGCGTC 59.406 50.000 0.00 0.00 32.37 5.19
125 126 0.312729 GTTCGGGTTGAAATTGGCGT 59.687 50.000 0.00 0.00 38.60 5.68
126 127 0.388006 GGTTCGGGTTGAAATTGGCG 60.388 55.000 0.00 0.00 38.60 5.69
127 128 0.388006 CGGTTCGGGTTGAAATTGGC 60.388 55.000 0.00 0.00 38.60 4.52
128 129 1.068816 GTCGGTTCGGGTTGAAATTGG 60.069 52.381 0.00 0.00 38.60 3.16
129 130 1.399215 CGTCGGTTCGGGTTGAAATTG 60.399 52.381 0.00 0.00 38.60 2.32
130 131 0.869730 CGTCGGTTCGGGTTGAAATT 59.130 50.000 0.00 0.00 38.60 1.82
131 132 0.033781 TCGTCGGTTCGGGTTGAAAT 59.966 50.000 0.00 0.00 38.60 2.17
132 133 0.179089 TTCGTCGGTTCGGGTTGAAA 60.179 50.000 0.00 0.00 38.60 2.69
133 134 0.179089 TTTCGTCGGTTCGGGTTGAA 60.179 50.000 0.00 0.00 0.00 2.69
134 135 0.179089 TTTTCGTCGGTTCGGGTTGA 60.179 50.000 0.00 0.00 0.00 3.18
135 136 0.869730 ATTTTCGTCGGTTCGGGTTG 59.130 50.000 0.00 0.00 0.00 3.77
136 137 1.596603 AATTTTCGTCGGTTCGGGTT 58.403 45.000 0.00 0.00 0.00 4.11
137 138 2.340337 CTAATTTTCGTCGGTTCGGGT 58.660 47.619 0.00 0.00 0.00 5.28
138 139 1.662122 CCTAATTTTCGTCGGTTCGGG 59.338 52.381 0.00 0.00 0.00 5.14
139 140 1.061566 GCCTAATTTTCGTCGGTTCGG 59.938 52.381 0.00 0.00 0.00 4.30
140 141 1.061566 GGCCTAATTTTCGTCGGTTCG 59.938 52.381 0.00 0.00 0.00 3.95
141 142 1.399440 GGGCCTAATTTTCGTCGGTTC 59.601 52.381 0.84 0.00 0.00 3.62
142 143 1.003928 AGGGCCTAATTTTCGTCGGTT 59.996 47.619 2.82 0.00 0.00 4.44
143 144 0.616891 AGGGCCTAATTTTCGTCGGT 59.383 50.000 2.82 0.00 0.00 4.69
144 145 1.400494 CAAGGGCCTAATTTTCGTCGG 59.600 52.381 6.41 0.00 0.00 4.79
145 146 1.400494 CCAAGGGCCTAATTTTCGTCG 59.600 52.381 6.41 0.00 0.00 5.12
146 147 1.749063 CCCAAGGGCCTAATTTTCGTC 59.251 52.381 6.41 0.00 0.00 4.20
147 148 1.618616 CCCCAAGGGCCTAATTTTCGT 60.619 52.381 6.41 0.00 35.35 3.85
148 149 1.111277 CCCCAAGGGCCTAATTTTCG 58.889 55.000 6.41 0.00 35.35 3.46
167 168 4.814294 AATCGGTCCAGTCGCGCC 62.814 66.667 0.00 0.00 0.00 6.53
168 169 1.908066 AAAAATCGGTCCAGTCGCGC 61.908 55.000 0.00 0.00 0.00 6.86
169 170 0.179225 CAAAAATCGGTCCAGTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
170 171 0.168128 CCAAAAATCGGTCCAGTCGC 59.832 55.000 0.00 0.00 0.00 5.19
171 172 0.168128 GCCAAAAATCGGTCCAGTCG 59.832 55.000 0.00 0.00 0.00 4.18
172 173 0.168128 CGCCAAAAATCGGTCCAGTC 59.832 55.000 0.00 0.00 0.00 3.51
173 174 0.536460 ACGCCAAAAATCGGTCCAGT 60.536 50.000 0.00 0.00 0.00 4.00
174 175 0.168128 GACGCCAAAAATCGGTCCAG 59.832 55.000 0.00 0.00 0.00 3.86
175 176 1.570347 CGACGCCAAAAATCGGTCCA 61.570 55.000 0.00 0.00 32.22 4.02
176 177 1.133869 CGACGCCAAAAATCGGTCC 59.866 57.895 0.00 0.00 32.22 4.46
177 178 4.737601 CGACGCCAAAAATCGGTC 57.262 55.556 0.00 0.00 32.22 4.79
180 181 2.573167 CGCCGACGCCAAAAATCG 60.573 61.111 0.00 0.00 35.62 3.34
181 182 2.202427 CCGCCGACGCCAAAAATC 60.202 61.111 0.00 0.00 38.22 2.17
182 183 4.413800 GCCGCCGACGCCAAAAAT 62.414 61.111 0.00 0.00 38.22 1.82
189 190 4.736631 GTTTTCAGCCGCCGACGC 62.737 66.667 0.00 0.00 38.22 5.19
190 191 3.011760 GAGTTTTCAGCCGCCGACG 62.012 63.158 0.00 0.00 39.67 5.12
191 192 2.861006 GAGTTTTCAGCCGCCGAC 59.139 61.111 0.00 0.00 0.00 4.79
192 193 2.736995 CGAGTTTTCAGCCGCCGA 60.737 61.111 0.00 0.00 0.00 5.54
193 194 3.011760 GACGAGTTTTCAGCCGCCG 62.012 63.158 0.00 0.00 0.00 6.46
194 195 1.668151 AGACGAGTTTTCAGCCGCC 60.668 57.895 0.00 0.00 0.00 6.13
195 196 1.493311 CAGACGAGTTTTCAGCCGC 59.507 57.895 0.00 0.00 0.00 6.53
196 197 0.319555 TCCAGACGAGTTTTCAGCCG 60.320 55.000 0.00 0.00 0.00 5.52
197 198 1.433534 CTCCAGACGAGTTTTCAGCC 58.566 55.000 0.00 0.00 33.51 4.85
198 199 1.000955 TCCTCCAGACGAGTTTTCAGC 59.999 52.381 0.00 0.00 36.82 4.26
199 200 2.678324 GTCCTCCAGACGAGTTTTCAG 58.322 52.381 0.00 0.00 36.82 3.02
200 201 2.814280 GTCCTCCAGACGAGTTTTCA 57.186 50.000 0.00 0.00 36.82 2.69
209 210 1.555533 CCCTAACAAGGTCCTCCAGAC 59.444 57.143 0.00 0.00 45.51 3.51
210 211 1.435563 TCCCTAACAAGGTCCTCCAGA 59.564 52.381 0.00 0.00 35.89 3.86
211 212 1.952621 TCCCTAACAAGGTCCTCCAG 58.047 55.000 0.00 0.00 35.89 3.86
212 213 2.266279 CTTCCCTAACAAGGTCCTCCA 58.734 52.381 0.00 0.00 35.89 3.86
213 214 2.027100 CACTTCCCTAACAAGGTCCTCC 60.027 54.545 0.00 0.00 0.00 4.30
214 215 2.027100 CCACTTCCCTAACAAGGTCCTC 60.027 54.545 0.00 0.00 0.00 3.71
215 216 1.985895 CCACTTCCCTAACAAGGTCCT 59.014 52.381 0.00 0.00 0.00 3.85
216 217 1.613520 GCCACTTCCCTAACAAGGTCC 60.614 57.143 0.00 0.00 0.00 4.46
217 218 1.351350 AGCCACTTCCCTAACAAGGTC 59.649 52.381 0.00 0.00 0.00 3.85
218 219 1.446016 AGCCACTTCCCTAACAAGGT 58.554 50.000 0.00 0.00 0.00 3.50
219 220 2.838202 TCTAGCCACTTCCCTAACAAGG 59.162 50.000 0.00 0.00 0.00 3.61
220 221 3.769844 TCTCTAGCCACTTCCCTAACAAG 59.230 47.826 0.00 0.00 0.00 3.16
221 222 3.786553 TCTCTAGCCACTTCCCTAACAA 58.213 45.455 0.00 0.00 0.00 2.83
222 223 3.468071 TCTCTAGCCACTTCCCTAACA 57.532 47.619 0.00 0.00 0.00 2.41
223 224 3.493524 GCATCTCTAGCCACTTCCCTAAC 60.494 52.174 0.00 0.00 0.00 2.34
224 225 2.700897 GCATCTCTAGCCACTTCCCTAA 59.299 50.000 0.00 0.00 0.00 2.69
225 226 2.091055 AGCATCTCTAGCCACTTCCCTA 60.091 50.000 0.00 0.00 0.00 3.53
226 227 1.127343 GCATCTCTAGCCACTTCCCT 58.873 55.000 0.00 0.00 0.00 4.20
227 228 1.069978 GAGCATCTCTAGCCACTTCCC 59.930 57.143 0.00 0.00 0.00 3.97
228 229 2.524569 GAGCATCTCTAGCCACTTCC 57.475 55.000 0.00 0.00 0.00 3.46
241 242 2.139118 GATTAGCCGGTTCAGAGCATC 58.861 52.381 1.90 0.00 0.00 3.91
242 243 1.765314 AGATTAGCCGGTTCAGAGCAT 59.235 47.619 1.90 0.00 0.00 3.79
243 244 1.134699 CAGATTAGCCGGTTCAGAGCA 60.135 52.381 1.90 0.00 0.00 4.26
244 245 1.134670 ACAGATTAGCCGGTTCAGAGC 60.135 52.381 1.90 0.00 0.00 4.09
245 246 2.544685 CACAGATTAGCCGGTTCAGAG 58.455 52.381 1.90 0.00 0.00 3.35
246 247 1.207089 CCACAGATTAGCCGGTTCAGA 59.793 52.381 1.90 0.00 0.00 3.27
247 248 1.066143 ACCACAGATTAGCCGGTTCAG 60.066 52.381 1.90 0.00 0.00 3.02
330 331 6.917477 GCAAGAATAACAATATTCCATGCGAA 59.083 34.615 15.23 0.00 45.71 4.70
440 441 8.658609 CGGACCGTTTACTAATTATCAAAGAAA 58.341 33.333 5.48 0.00 0.00 2.52
449 450 7.328249 CACTTTGTACGGACCGTTTACTAATTA 59.672 37.037 27.06 0.00 41.54 1.40
466 467 4.941263 TCCTGGCATCAATACACTTTGTAC 59.059 41.667 0.00 0.00 35.42 2.90
499 500 4.530388 CATACATGATGTTCAATGCCGTC 58.470 43.478 2.29 0.00 0.00 4.79
523 524 3.936902 TTACTTGTGCAACTTCGTCAC 57.063 42.857 0.00 0.00 38.04 3.67
534 535 5.048013 AGCCCTAAAACATCTTTACTTGTGC 60.048 40.000 0.00 0.00 0.00 4.57
538 539 6.041523 TGCAAAGCCCTAAAACATCTTTACTT 59.958 34.615 0.00 0.00 0.00 2.24
556 557 5.102313 AGTTGTAGTTTTTCTGTGCAAAGC 58.898 37.500 0.00 0.00 0.00 3.51
564 566 6.633500 TCCCATGAAGTTGTAGTTTTTCTG 57.367 37.500 0.00 0.00 0.00 3.02
566 568 8.887036 AAAATCCCATGAAGTTGTAGTTTTTC 57.113 30.769 0.00 0.00 0.00 2.29
583 585 7.774694 ATCCGGGGTATATATTAAAATCCCA 57.225 36.000 0.00 0.00 35.56 4.37
603 609 0.102481 CTACTCACCCCACGAATCCG 59.898 60.000 0.00 0.00 42.50 4.18
668 674 9.588096 AGGAAGATTGTACTGGTAAAGATTTTT 57.412 29.630 0.00 0.00 0.00 1.94
669 675 9.588096 AAGGAAGATTGTACTGGTAAAGATTTT 57.412 29.630 0.00 0.00 0.00 1.82
670 676 9.588096 AAAGGAAGATTGTACTGGTAAAGATTT 57.412 29.630 0.00 0.00 0.00 2.17
671 677 9.232473 GAAAGGAAGATTGTACTGGTAAAGATT 57.768 33.333 0.00 0.00 0.00 2.40
672 678 7.829706 GGAAAGGAAGATTGTACTGGTAAAGAT 59.170 37.037 0.00 0.00 0.00 2.40
673 679 7.017254 AGGAAAGGAAGATTGTACTGGTAAAGA 59.983 37.037 0.00 0.00 0.00 2.52
674 680 7.168905 AGGAAAGGAAGATTGTACTGGTAAAG 58.831 38.462 0.00 0.00 0.00 1.85
675 681 7.086685 AGGAAAGGAAGATTGTACTGGTAAA 57.913 36.000 0.00 0.00 0.00 2.01
676 682 6.697641 AGGAAAGGAAGATTGTACTGGTAA 57.302 37.500 0.00 0.00 0.00 2.85
677 683 7.456902 ACTTAGGAAAGGAAGATTGTACTGGTA 59.543 37.037 0.00 0.00 37.01 3.25
678 684 6.272558 ACTTAGGAAAGGAAGATTGTACTGGT 59.727 38.462 0.00 0.00 37.01 4.00
679 685 6.712276 ACTTAGGAAAGGAAGATTGTACTGG 58.288 40.000 0.00 0.00 37.01 4.00
680 686 9.535878 GATACTTAGGAAAGGAAGATTGTACTG 57.464 37.037 0.00 0.00 37.01 2.74
681 687 8.706521 GGATACTTAGGAAAGGAAGATTGTACT 58.293 37.037 0.00 0.00 37.01 2.73
682 688 8.890124 GGATACTTAGGAAAGGAAGATTGTAC 57.110 38.462 0.00 0.00 37.01 2.90
702 708 8.538409 AAATGTGCTCAAAATTTTCAGGATAC 57.462 30.769 3.87 2.02 0.00 2.24
703 709 9.206870 GAAAATGTGCTCAAAATTTTCAGGATA 57.793 29.630 15.84 0.00 44.27 2.59
704 710 7.095523 CGAAAATGTGCTCAAAATTTTCAGGAT 60.096 33.333 18.66 0.00 44.74 3.24
705 711 6.200665 CGAAAATGTGCTCAAAATTTTCAGGA 59.799 34.615 18.66 0.00 44.74 3.86
706 712 6.018832 ACGAAAATGTGCTCAAAATTTTCAGG 60.019 34.615 18.66 10.51 44.74 3.86
707 713 6.936374 ACGAAAATGTGCTCAAAATTTTCAG 58.064 32.000 18.66 0.00 44.74 3.02
708 714 6.900568 ACGAAAATGTGCTCAAAATTTTCA 57.099 29.167 18.66 0.00 44.74 2.69
709 715 7.527183 GCTAACGAAAATGTGCTCAAAATTTTC 59.473 33.333 12.70 12.70 42.68 2.29
710 716 7.344441 GCTAACGAAAATGTGCTCAAAATTTT 58.656 30.769 0.00 0.00 36.47 1.82
711 717 6.073819 GGCTAACGAAAATGTGCTCAAAATTT 60.074 34.615 0.00 0.00 0.00 1.82
730 736 4.023878 TGTCCAAACATACAAACGGCTAAC 60.024 41.667 0.00 0.00 0.00 2.34
803 809 7.360361 GTGAACTGGGTTGTTAGAATACTTTG 58.640 38.462 0.00 0.00 0.00 2.77
840 846 8.787852 GGACTTTGAAACAGTTCTTCATAGAAT 58.212 33.333 10.67 0.00 42.14 2.40
850 856 3.363178 CAAGCGGACTTTGAAACAGTTC 58.637 45.455 0.00 0.00 32.29 3.01
867 899 4.021104 AGAGGGAAAGTAATTTTGGCAAGC 60.021 41.667 0.00 0.00 0.00 4.01
928 1075 5.626142 TCCAACAACAAGATAGCTACCAAA 58.374 37.500 0.00 0.00 0.00 3.28
1021 1170 1.466167 CACAGCACACCTTCTGTATGC 59.534 52.381 0.00 0.00 41.19 3.14
1024 1173 0.758734 AGCACAGCACACCTTCTGTA 59.241 50.000 0.00 0.00 41.19 2.74
1067 1226 1.359848 CGCCTGGTACTGCTAAAGTG 58.640 55.000 0.00 0.00 40.26 3.16
1068 1227 0.249398 CCGCCTGGTACTGCTAAAGT 59.751 55.000 0.00 0.00 43.40 2.66
1069 1228 0.462047 CCCGCCTGGTACTGCTAAAG 60.462 60.000 0.00 0.00 0.00 1.85
1070 1229 0.905809 TCCCGCCTGGTACTGCTAAA 60.906 55.000 0.00 0.00 34.77 1.85
1071 1230 0.689745 ATCCCGCCTGGTACTGCTAA 60.690 55.000 0.00 0.00 34.77 3.09
1072 1231 1.075525 ATCCCGCCTGGTACTGCTA 60.076 57.895 0.00 0.00 34.77 3.49
1073 1232 2.365635 ATCCCGCCTGGTACTGCT 60.366 61.111 0.00 0.00 34.77 4.24
1074 1233 2.203070 CATCCCGCCTGGTACTGC 60.203 66.667 0.00 0.00 34.77 4.40
1078 1237 2.363276 ACGTCATCCCGCCTGGTA 60.363 61.111 0.00 0.00 34.77 3.25
1155 1314 0.736636 CGTGCATGCATCTGGATTGT 59.263 50.000 25.64 0.00 0.00 2.71
1158 1317 1.977056 ATTCGTGCATGCATCTGGAT 58.023 45.000 25.64 14.10 0.00 3.41
1160 1319 3.909776 AATATTCGTGCATGCATCTGG 57.090 42.857 25.64 13.59 0.00 3.86
1161 1320 4.851010 TGAAATATTCGTGCATGCATCTG 58.149 39.130 25.64 16.73 0.00 2.90
1173 1332 3.004734 GGGGCCATGAGTTGAAATATTCG 59.995 47.826 4.39 0.00 0.00 3.34
1188 1347 7.068593 CGAATCAATTACATATATTGGGGCCAT 59.931 37.037 4.39 0.00 34.51 4.40
1214 1373 3.133003 TCGATCTCCATTCTTCCCTTGAC 59.867 47.826 0.00 0.00 0.00 3.18
1224 1383 6.577103 TGCATATAATCCTCGATCTCCATTC 58.423 40.000 0.00 0.00 0.00 2.67
1225 1384 6.407865 CCTGCATATAATCCTCGATCTCCATT 60.408 42.308 0.00 0.00 0.00 3.16
1226 1385 5.070180 CCTGCATATAATCCTCGATCTCCAT 59.930 44.000 0.00 0.00 0.00 3.41
1227 1386 4.403752 CCTGCATATAATCCTCGATCTCCA 59.596 45.833 0.00 0.00 0.00 3.86
1229 1388 5.590530 ACCTGCATATAATCCTCGATCTC 57.409 43.478 0.00 0.00 0.00 2.75
1230 1389 5.068460 GCTACCTGCATATAATCCTCGATCT 59.932 44.000 0.00 0.00 42.31 2.75
1271 1452 1.092921 GTACGCCGGAATTGCCATCA 61.093 55.000 5.05 0.00 35.94 3.07
1272 1453 1.092921 TGTACGCCGGAATTGCCATC 61.093 55.000 5.05 0.00 35.94 3.51
1332 1513 1.150081 GGCCCTGATCTCCACCATG 59.850 63.158 0.00 0.00 0.00 3.66
1602 1783 1.912971 GGCCTTTATGTCGGTCCCT 59.087 57.895 0.00 0.00 0.00 4.20
1668 1849 4.360405 ATGTTGGGGGTGCGGGAC 62.360 66.667 0.00 0.00 0.00 4.46
1698 1879 3.063084 GAGGTCGTCTGCCCGTCT 61.063 66.667 0.00 0.00 0.00 4.18
1783 1964 2.256591 CGCTCAGCAGCTTGTGGTT 61.257 57.895 0.00 0.00 44.40 3.67
1983 2173 0.725686 CGGTGATCGTCGTGTAGTCT 59.274 55.000 0.00 0.00 0.00 3.24
2013 2203 1.293062 ACTTGATGGTGATGAGGCCT 58.707 50.000 3.86 3.86 0.00 5.19
2082 2272 2.033602 TCGTCGCTGTCCCTGAGA 59.966 61.111 0.00 0.00 0.00 3.27
2269 2471 2.819595 GATGGTGTCGGCGTGCAT 60.820 61.111 6.85 0.00 0.00 3.96
2312 2514 1.684386 CGCTTCCTCCAGCCTCTCAT 61.684 60.000 0.00 0.00 36.31 2.90
2313 2515 2.354401 CGCTTCCTCCAGCCTCTCA 61.354 63.158 0.00 0.00 36.31 3.27
2385 2587 2.678934 TTCTCCCCGTCGTCCAGG 60.679 66.667 0.00 0.00 0.00 4.45
2386 2588 1.038130 ATCTTCTCCCCGTCGTCCAG 61.038 60.000 0.00 0.00 0.00 3.86
2387 2589 1.000019 ATCTTCTCCCCGTCGTCCA 60.000 57.895 0.00 0.00 0.00 4.02
2388 2590 1.437986 CATCTTCTCCCCGTCGTCC 59.562 63.158 0.00 0.00 0.00 4.79
2464 2666 0.968901 TGTCCCCGCTCGTTGTAGAT 60.969 55.000 0.00 0.00 0.00 1.98
2652 2854 1.743958 GAAATCTCTCCCTCGACGTCA 59.256 52.381 17.16 1.87 0.00 4.35
2663 2865 6.307915 GTGGCTTTCTTTTACGAAATCTCTC 58.692 40.000 0.00 0.00 32.90 3.20
2664 2866 5.181433 GGTGGCTTTCTTTTACGAAATCTCT 59.819 40.000 0.00 0.00 32.90 3.10
2673 2875 2.299013 CCAAGGGGTGGCTTTCTTTTAC 59.701 50.000 0.00 0.00 41.72 2.01
2746 2956 3.374058 AGGACGTACAAATACATGCAAGC 59.626 43.478 0.00 0.00 0.00 4.01
2788 2998 7.801716 ACATGCGTTTATTACATTACAGGAT 57.198 32.000 0.00 0.00 0.00 3.24
2790 3000 9.944663 AATTACATGCGTTTATTACATTACAGG 57.055 29.630 0.00 0.00 0.00 4.00
2797 3007 8.187354 TCGAGAAATTACATGCGTTTATTACA 57.813 30.769 0.00 0.00 0.00 2.41
2798 3008 8.325997 ACTCGAGAAATTACATGCGTTTATTAC 58.674 33.333 21.68 0.00 0.00 1.89
2800 3010 7.303634 ACTCGAGAAATTACATGCGTTTATT 57.696 32.000 21.68 0.00 0.00 1.40
2801 3011 6.903883 ACTCGAGAAATTACATGCGTTTAT 57.096 33.333 21.68 0.00 0.00 1.40
2802 3012 6.715344 AACTCGAGAAATTACATGCGTTTA 57.285 33.333 21.68 0.00 0.00 2.01
2803 3013 5.607119 AACTCGAGAAATTACATGCGTTT 57.393 34.783 21.68 0.00 0.00 3.60
2804 3014 5.178623 TCAAACTCGAGAAATTACATGCGTT 59.821 36.000 21.68 0.00 0.00 4.84
2805 3015 4.688879 TCAAACTCGAGAAATTACATGCGT 59.311 37.500 21.68 0.00 0.00 5.24
2806 3016 5.203358 TCAAACTCGAGAAATTACATGCG 57.797 39.130 21.68 0.00 0.00 4.73
2817 3027 3.242518 CGTGCAACTATCAAACTCGAGA 58.757 45.455 21.68 0.00 31.75 4.04
2820 3030 1.201921 GGCGTGCAACTATCAAACTCG 60.202 52.381 0.00 0.00 31.75 4.18
2830 3040 2.661866 GTCGACTGGCGTGCAACT 60.662 61.111 8.70 0.00 41.80 3.16
2831 3041 2.661866 AGTCGACTGGCGTGCAAC 60.662 61.111 19.30 0.00 41.80 4.17
2832 3042 2.636778 TTCAGTCGACTGGCGTGCAA 62.637 55.000 37.82 24.04 43.91 4.08
2833 3043 3.145422 TTCAGTCGACTGGCGTGCA 62.145 57.895 37.82 19.97 43.91 4.57
2834 3044 2.355837 TTCAGTCGACTGGCGTGC 60.356 61.111 37.82 1.18 43.91 5.34
2835 3045 0.318699 TTCTTCAGTCGACTGGCGTG 60.319 55.000 37.82 25.74 43.91 5.34
2836 3046 0.039074 CTTCTTCAGTCGACTGGCGT 60.039 55.000 37.82 7.10 43.91 5.68
2837 3047 0.241213 TCTTCTTCAGTCGACTGGCG 59.759 55.000 37.82 28.94 43.91 5.69
2838 3048 2.535331 GATCTTCTTCAGTCGACTGGC 58.465 52.381 37.82 17.30 43.91 4.85
2839 3049 2.420372 TCGATCTTCTTCAGTCGACTGG 59.580 50.000 37.82 25.83 43.91 4.00
2840 3050 3.679725 CTCGATCTTCTTCAGTCGACTG 58.320 50.000 34.76 34.76 45.08 3.51
2841 3051 2.096819 GCTCGATCTTCTTCAGTCGACT 59.903 50.000 13.58 13.58 38.09 4.18
2842 3052 2.446282 GCTCGATCTTCTTCAGTCGAC 58.554 52.381 7.70 7.70 38.09 4.20
2843 3053 1.062733 CGCTCGATCTTCTTCAGTCGA 59.937 52.381 0.00 0.00 40.38 4.20
2844 3054 1.202087 ACGCTCGATCTTCTTCAGTCG 60.202 52.381 0.00 0.00 35.55 4.18
2845 3055 2.553079 ACGCTCGATCTTCTTCAGTC 57.447 50.000 0.00 0.00 0.00 3.51
2846 3056 3.628032 TCATACGCTCGATCTTCTTCAGT 59.372 43.478 0.00 0.00 0.00 3.41
2847 3057 4.216366 TCATACGCTCGATCTTCTTCAG 57.784 45.455 0.00 0.00 0.00 3.02
2848 3058 4.517075 AGATCATACGCTCGATCTTCTTCA 59.483 41.667 5.49 0.00 44.70 3.02
2849 3059 4.851014 CAGATCATACGCTCGATCTTCTTC 59.149 45.833 8.00 0.00 44.70 2.87
2850 3060 4.277174 ACAGATCATACGCTCGATCTTCTT 59.723 41.667 8.00 0.00 44.70 2.52
2851 3061 3.818210 ACAGATCATACGCTCGATCTTCT 59.182 43.478 8.00 0.00 44.70 2.85
2852 3062 4.153958 ACAGATCATACGCTCGATCTTC 57.846 45.455 8.00 0.00 44.70 2.87
2853 3063 4.277174 AGAACAGATCATACGCTCGATCTT 59.723 41.667 8.00 0.00 44.70 2.40
2855 3065 4.153958 AGAACAGATCATACGCTCGATC 57.846 45.455 0.00 0.00 38.66 3.69
2856 3066 3.057876 GGAGAACAGATCATACGCTCGAT 60.058 47.826 0.00 0.00 0.00 3.59
2857 3067 2.290916 GGAGAACAGATCATACGCTCGA 59.709 50.000 0.00 0.00 0.00 4.04
2858 3068 2.033424 TGGAGAACAGATCATACGCTCG 59.967 50.000 0.00 0.00 0.00 5.03
2859 3069 3.717400 TGGAGAACAGATCATACGCTC 57.283 47.619 0.00 0.00 0.00 5.03
2871 3081 1.070134 CCGTCAAACTCCTGGAGAACA 59.930 52.381 29.71 7.89 33.32 3.18
2872 3082 1.070289 ACCGTCAAACTCCTGGAGAAC 59.930 52.381 29.71 18.45 33.32 3.01
2873 3083 1.420430 ACCGTCAAACTCCTGGAGAA 58.580 50.000 29.71 9.40 33.32 2.87
2874 3084 1.070134 CAACCGTCAAACTCCTGGAGA 59.930 52.381 29.71 4.90 33.32 3.71
2875 3085 1.512926 CAACCGTCAAACTCCTGGAG 58.487 55.000 22.00 22.00 35.52 3.86
2876 3086 0.107831 CCAACCGTCAAACTCCTGGA 59.892 55.000 0.00 0.00 0.00 3.86
2877 3087 0.107831 TCCAACCGTCAAACTCCTGG 59.892 55.000 0.00 0.00 0.00 4.45
2878 3088 1.512926 CTCCAACCGTCAAACTCCTG 58.487 55.000 0.00 0.00 0.00 3.86
2879 3089 0.396811 CCTCCAACCGTCAAACTCCT 59.603 55.000 0.00 0.00 0.00 3.69
2880 3090 0.395312 TCCTCCAACCGTCAAACTCC 59.605 55.000 0.00 0.00 0.00 3.85
2881 3091 2.143925 CTTCCTCCAACCGTCAAACTC 58.856 52.381 0.00 0.00 0.00 3.01
2882 3092 1.766496 TCTTCCTCCAACCGTCAAACT 59.234 47.619 0.00 0.00 0.00 2.66
2883 3093 2.143925 CTCTTCCTCCAACCGTCAAAC 58.856 52.381 0.00 0.00 0.00 2.93
2884 3094 1.071699 CCTCTTCCTCCAACCGTCAAA 59.928 52.381 0.00 0.00 0.00 2.69
2885 3095 0.685097 CCTCTTCCTCCAACCGTCAA 59.315 55.000 0.00 0.00 0.00 3.18
2886 3096 0.178944 TCCTCTTCCTCCAACCGTCA 60.179 55.000 0.00 0.00 0.00 4.35
2887 3097 0.246910 GTCCTCTTCCTCCAACCGTC 59.753 60.000 0.00 0.00 0.00 4.79
2888 3098 1.533469 CGTCCTCTTCCTCCAACCGT 61.533 60.000 0.00 0.00 0.00 4.83
2889 3099 1.215647 CGTCCTCTTCCTCCAACCG 59.784 63.158 0.00 0.00 0.00 4.44
2890 3100 0.037232 CACGTCCTCTTCCTCCAACC 60.037 60.000 0.00 0.00 0.00 3.77
2891 3101 0.966920 TCACGTCCTCTTCCTCCAAC 59.033 55.000 0.00 0.00 0.00 3.77
2892 3102 1.257743 CTCACGTCCTCTTCCTCCAA 58.742 55.000 0.00 0.00 0.00 3.53
2893 3103 1.251527 GCTCACGTCCTCTTCCTCCA 61.252 60.000 0.00 0.00 0.00 3.86
2894 3104 1.251527 TGCTCACGTCCTCTTCCTCC 61.252 60.000 0.00 0.00 0.00 4.30
2895 3105 0.172352 CTGCTCACGTCCTCTTCCTC 59.828 60.000 0.00 0.00 0.00 3.71
2896 3106 0.251386 TCTGCTCACGTCCTCTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
2897 3107 0.603569 TTCTGCTCACGTCCTCTTCC 59.396 55.000 0.00 0.00 0.00 3.46
2898 3108 1.670380 GGTTCTGCTCACGTCCTCTTC 60.670 57.143 0.00 0.00 0.00 2.87
2899 3109 0.318762 GGTTCTGCTCACGTCCTCTT 59.681 55.000 0.00 0.00 0.00 2.85
2900 3110 1.867919 CGGTTCTGCTCACGTCCTCT 61.868 60.000 0.00 0.00 0.00 3.69
2901 3111 1.444553 CGGTTCTGCTCACGTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
2902 3112 1.745320 AACGGTTCTGCTCACGTCCT 61.745 55.000 0.00 0.00 38.79 3.85
2903 3113 1.282930 GAACGGTTCTGCTCACGTCC 61.283 60.000 13.49 0.00 38.79 4.79
2904 3114 0.318784 AGAACGGTTCTGCTCACGTC 60.319 55.000 21.86 0.00 38.91 4.34
2905 3115 0.104304 AAGAACGGTTCTGCTCACGT 59.896 50.000 23.05 3.77 40.59 4.49
2906 3116 1.217882 AAAGAACGGTTCTGCTCACG 58.782 50.000 23.05 0.00 40.59 4.35
2907 3117 2.354821 ACAAAAGAACGGTTCTGCTCAC 59.645 45.455 23.05 0.00 40.59 3.51
2908 3118 2.639065 ACAAAAGAACGGTTCTGCTCA 58.361 42.857 23.05 0.00 40.59 4.26
2909 3119 3.692791 AACAAAAGAACGGTTCTGCTC 57.307 42.857 23.05 0.00 40.59 4.26
2910 3120 4.215613 GGATAACAAAAGAACGGTTCTGCT 59.784 41.667 23.05 11.39 40.59 4.24
2911 3121 4.023536 TGGATAACAAAAGAACGGTTCTGC 60.024 41.667 23.05 5.71 40.59 4.26
2912 3122 5.682943 TGGATAACAAAAGAACGGTTCTG 57.317 39.130 23.05 14.32 40.59 3.02
2913 3123 5.277634 CGTTGGATAACAAAAGAACGGTTCT 60.278 40.000 17.38 17.38 41.58 3.01
2914 3124 4.907582 CGTTGGATAACAAAAGAACGGTTC 59.092 41.667 12.91 12.91 41.58 3.62
2915 3125 4.261280 CCGTTGGATAACAAAAGAACGGTT 60.261 41.667 11.90 0.00 46.77 4.44
2916 3126 3.251487 CCGTTGGATAACAAAAGAACGGT 59.749 43.478 11.90 0.00 46.77 4.83
2917 3127 3.817238 CCGTTGGATAACAAAAGAACGG 58.183 45.455 0.00 0.00 46.80 4.44
2918 3128 3.058501 AGCCGTTGGATAACAAAAGAACG 60.059 43.478 0.00 0.00 41.58 3.95
2919 3129 4.023536 TGAGCCGTTGGATAACAAAAGAAC 60.024 41.667 0.00 0.00 41.58 3.01
2920 3130 4.138290 TGAGCCGTTGGATAACAAAAGAA 58.862 39.130 0.00 0.00 41.58 2.52
2921 3131 3.745799 TGAGCCGTTGGATAACAAAAGA 58.254 40.909 0.00 0.00 41.58 2.52
2922 3132 3.751175 TCTGAGCCGTTGGATAACAAAAG 59.249 43.478 0.00 0.00 41.58 2.27
2923 3133 3.745799 TCTGAGCCGTTGGATAACAAAA 58.254 40.909 0.00 0.00 41.58 2.44
2924 3134 3.410631 TCTGAGCCGTTGGATAACAAA 57.589 42.857 0.00 0.00 41.58 2.83
2925 3135 3.627395 ATCTGAGCCGTTGGATAACAA 57.373 42.857 0.00 0.00 36.58 2.83
2926 3136 3.055458 TCAATCTGAGCCGTTGGATAACA 60.055 43.478 0.00 0.00 36.58 2.41
2927 3137 3.531538 TCAATCTGAGCCGTTGGATAAC 58.468 45.455 0.00 0.00 0.00 1.89
2928 3138 3.904800 TCAATCTGAGCCGTTGGATAA 57.095 42.857 0.00 0.00 0.00 1.75
2929 3139 3.244215 GGATCAATCTGAGCCGTTGGATA 60.244 47.826 0.00 0.00 43.58 2.59
2930 3140 2.486191 GGATCAATCTGAGCCGTTGGAT 60.486 50.000 0.00 0.00 43.58 3.41
2931 3141 1.134401 GGATCAATCTGAGCCGTTGGA 60.134 52.381 0.00 0.00 43.58 3.53
2932 3142 1.303309 GGATCAATCTGAGCCGTTGG 58.697 55.000 0.00 0.00 43.58 3.77
2938 3148 4.608951 GATTTGCAAGGATCAATCTGAGC 58.391 43.478 0.00 0.00 30.81 4.26
2939 3149 4.573607 TCGATTTGCAAGGATCAATCTGAG 59.426 41.667 10.84 0.00 0.00 3.35
2940 3150 4.333649 GTCGATTTGCAAGGATCAATCTGA 59.666 41.667 10.84 5.06 0.00 3.27
2941 3151 4.334759 AGTCGATTTGCAAGGATCAATCTG 59.665 41.667 10.84 3.22 0.00 2.90
2942 3152 4.521146 AGTCGATTTGCAAGGATCAATCT 58.479 39.130 10.84 3.91 0.00 2.40
2943 3153 4.889832 AGTCGATTTGCAAGGATCAATC 57.110 40.909 10.84 4.59 0.00 2.67
2944 3154 5.066505 GGTTAGTCGATTTGCAAGGATCAAT 59.933 40.000 10.84 0.00 0.00 2.57
2945 3155 4.394920 GGTTAGTCGATTTGCAAGGATCAA 59.605 41.667 10.84 0.00 0.00 2.57
2946 3156 3.938963 GGTTAGTCGATTTGCAAGGATCA 59.061 43.478 10.84 0.00 0.00 2.92
2947 3157 3.312697 GGGTTAGTCGATTTGCAAGGATC 59.687 47.826 0.00 0.00 0.00 3.36
2948 3158 3.279434 GGGTTAGTCGATTTGCAAGGAT 58.721 45.455 0.00 0.00 0.00 3.24
2949 3159 2.039216 TGGGTTAGTCGATTTGCAAGGA 59.961 45.455 0.00 0.00 0.00 3.36
2950 3160 2.432444 TGGGTTAGTCGATTTGCAAGG 58.568 47.619 0.00 0.00 0.00 3.61
2951 3161 4.701956 ATTGGGTTAGTCGATTTGCAAG 57.298 40.909 0.00 0.00 0.00 4.01
2952 3162 4.520874 TGAATTGGGTTAGTCGATTTGCAA 59.479 37.500 0.00 0.00 0.00 4.08
2953 3163 4.075682 TGAATTGGGTTAGTCGATTTGCA 58.924 39.130 0.00 0.00 0.00 4.08
2954 3164 4.695217 TGAATTGGGTTAGTCGATTTGC 57.305 40.909 0.00 0.00 0.00 3.68
2955 3165 6.194796 ACATGAATTGGGTTAGTCGATTTG 57.805 37.500 0.00 0.00 0.00 2.32
2956 3166 6.834168 AACATGAATTGGGTTAGTCGATTT 57.166 33.333 0.00 0.00 0.00 2.17
2957 3167 6.834168 AAACATGAATTGGGTTAGTCGATT 57.166 33.333 0.00 0.00 0.00 3.34
2958 3168 6.432783 TGAAAACATGAATTGGGTTAGTCGAT 59.567 34.615 0.00 0.00 0.00 3.59
2959 3169 5.765677 TGAAAACATGAATTGGGTTAGTCGA 59.234 36.000 0.00 0.00 0.00 4.20
2960 3170 6.007936 TGAAAACATGAATTGGGTTAGTCG 57.992 37.500 0.00 0.00 0.00 4.18
2961 3171 6.981722 ACTGAAAACATGAATTGGGTTAGTC 58.018 36.000 0.00 0.00 0.00 2.59
2962 3172 6.293955 CGACTGAAAACATGAATTGGGTTAGT 60.294 38.462 0.00 0.00 0.00 2.24
2963 3173 6.072728 TCGACTGAAAACATGAATTGGGTTAG 60.073 38.462 0.00 0.00 0.00 2.34
2964 3174 5.765677 TCGACTGAAAACATGAATTGGGTTA 59.234 36.000 0.00 0.00 0.00 2.85
2965 3175 4.582656 TCGACTGAAAACATGAATTGGGTT 59.417 37.500 0.00 0.00 0.00 4.11
2966 3176 4.023193 GTCGACTGAAAACATGAATTGGGT 60.023 41.667 8.70 0.00 0.00 4.51
2967 3177 4.216257 AGTCGACTGAAAACATGAATTGGG 59.784 41.667 19.30 0.00 0.00 4.12
2968 3178 5.362556 AGTCGACTGAAAACATGAATTGG 57.637 39.130 19.30 0.00 0.00 3.16
2969 3179 5.116074 GCAAGTCGACTGAAAACATGAATTG 59.884 40.000 20.85 9.67 35.31 2.32
2970 3180 5.215160 GCAAGTCGACTGAAAACATGAATT 58.785 37.500 20.85 0.00 0.00 2.17
2971 3181 4.275689 TGCAAGTCGACTGAAAACATGAAT 59.724 37.500 20.85 0.00 0.00 2.57
2972 3182 3.625313 TGCAAGTCGACTGAAAACATGAA 59.375 39.130 20.85 2.94 0.00 2.57
2973 3183 3.202097 TGCAAGTCGACTGAAAACATGA 58.798 40.909 20.85 0.00 0.00 3.07
2974 3184 3.548587 CTGCAAGTCGACTGAAAACATG 58.451 45.455 20.85 12.72 0.00 3.21
2975 3185 3.885484 CTGCAAGTCGACTGAAAACAT 57.115 42.857 20.85 0.00 0.00 2.71
3003 3213 5.897377 AATAAAATCCACCCTTTGTCGAG 57.103 39.130 0.00 0.00 0.00 4.04
3122 3335 5.181690 TGCTATTTGCCGATGGTATTTTC 57.818 39.130 0.00 0.00 42.00 2.29
3132 3346 6.989759 TCTTATATGACTTTGCTATTTGCCGA 59.010 34.615 0.00 0.00 42.00 5.54
3207 3429 2.221055 AGCGTTGTTTGTCAATCTCGAC 59.779 45.455 12.39 0.00 38.38 4.20
3211 3433 4.498009 CCTGAAAGCGTTGTTTGTCAATCT 60.498 41.667 0.00 0.00 38.38 2.40
3215 3437 2.360844 TCCTGAAAGCGTTGTTTGTCA 58.639 42.857 0.00 0.00 0.00 3.58
3228 3518 0.392998 GCATCGCTCCCTTCCTGAAA 60.393 55.000 0.00 0.00 0.00 2.69
3284 3574 3.821033 CAGGGTGAAAACCTAGACTTTGG 59.179 47.826 0.00 0.00 36.32 3.28
3334 3624 1.871039 TCGTTAGCTTGTTGAAGGCAC 59.129 47.619 0.00 0.00 0.00 5.01
3394 3687 2.026636 CCGGGGTGAAAACCTAGATCAA 60.027 50.000 0.00 0.00 0.00 2.57
3398 3691 1.272807 CTCCGGGGTGAAAACCTAGA 58.727 55.000 0.00 0.00 0.00 2.43
3466 3760 2.556287 GAAAAGTGGCGGCGACAG 59.444 61.111 19.67 0.00 0.00 3.51
3474 3768 2.280628 CTAGGATCGTGGAAAAGTGGC 58.719 52.381 0.00 0.00 0.00 5.01
3554 3849 4.122776 GCAATCTATGGACGATGTCTTGT 58.877 43.478 0.00 0.00 32.47 3.16
3580 3876 1.065709 AGGTGGTTGTTTCGACAGTGT 60.066 47.619 0.00 0.00 0.00 3.55
3591 3887 1.352352 CCTCCAAGATCAGGTGGTTGT 59.648 52.381 14.07 0.00 35.55 3.32
3670 3966 0.544357 TCCAGGATGAACACTCCGGT 60.544 55.000 0.00 0.00 39.69 5.28
3749 4097 3.998672 GTGAGGTCCGACCGGCAA 61.999 66.667 12.04 0.00 44.90 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.