Multiple sequence alignment - TraesCS5A01G011400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G011400 chr5A 100.000 2761 0 0 1 2761 7494127 7496887 0.000000e+00 5099.0
1 TraesCS5A01G011400 chr5A 96.335 191 7 0 7 197 60095927 60095737 5.740000e-82 315.0
2 TraesCS5A01G011400 chr5D 86.829 987 67 23 316 1245 9330657 9331637 0.000000e+00 1044.0
3 TraesCS5A01G011400 chr5D 89.194 583 51 7 1236 1811 9331661 9332238 0.000000e+00 717.0
4 TraesCS5A01G011400 chr5D 81.903 536 57 25 2238 2757 9332762 9333273 1.530000e-112 416.0
5 TraesCS5A01G011400 chr5D 80.992 242 17 9 1967 2199 9332540 9332761 6.120000e-37 165.0
6 TraesCS5A01G011400 chr5B 84.987 393 37 13 1428 1805 9302922 9303307 2.010000e-101 379.0
7 TraesCS5A01G011400 chr5B 84.532 278 26 7 386 646 9301792 9302069 2.730000e-65 259.0
8 TraesCS5A01G011400 chr5B 92.614 176 13 0 1543 1718 7730712 7730887 1.270000e-63 254.0
9 TraesCS5A01G011400 chr5B 91.975 162 13 0 1236 1397 9302760 9302921 7.690000e-56 228.0
10 TraesCS5A01G011400 chr5B 84.545 220 18 11 705 908 9302158 9302377 1.300000e-48 204.0
11 TraesCS5A01G011400 chr5B 100.000 29 0 0 693 721 9302111 9302139 1.000000e-03 54.7
12 TraesCS5A01G011400 chr2A 95.855 193 8 0 7 199 677070022 677069830 2.060000e-81 313.0
13 TraesCS5A01G011400 chr2A 95.855 193 8 0 7 199 677101963 677101771 2.060000e-81 313.0
14 TraesCS5A01G011400 chr2A 95.855 193 8 0 7 199 677173237 677173045 2.060000e-81 313.0
15 TraesCS5A01G011400 chr2A 96.277 188 7 0 7 194 720376541 720376728 2.670000e-80 309.0
16 TraesCS5A01G011400 chr6A 95.833 192 8 0 7 198 559205631 559205440 7.430000e-81 311.0
17 TraesCS5A01G011400 chr4A 95.833 192 8 0 7 198 580480449 580480640 7.430000e-81 311.0
18 TraesCS5A01G011400 chr1B 96.296 189 7 0 7 195 547278757 547278945 7.430000e-81 311.0
19 TraesCS5A01G011400 chr1A 95.812 191 8 0 7 197 20460999 20461189 2.670000e-80 309.0
20 TraesCS5A01G011400 chr1D 97.297 37 1 0 1812 1848 268388995 268388959 2.300000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G011400 chr5A 7494127 7496887 2760 False 5099.00 5099 100.0000 1 2761 1 chr5A.!!$F1 2760
1 TraesCS5A01G011400 chr5D 9330657 9333273 2616 False 585.50 1044 84.7295 316 2757 4 chr5D.!!$F1 2441
2 TraesCS5A01G011400 chr5B 9301792 9303307 1515 False 224.94 379 89.2078 386 1805 5 chr5B.!!$F2 1419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.03438 TCGTACACCAGCTAGCTCCT 60.034 55.0 16.15 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2345 0.029577 TGGCCACCCACCCATCTATA 60.03 55.0 0.0 0.0 35.79 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
58 59 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
59 60 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
60 61 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
61 62 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
62 63 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
63 64 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
64 65 6.098838 TCTCTTAGCACAATATGTCTCACCAT 59.901 38.462 0.00 0.00 0.00 3.55
65 66 7.287696 TCTCTTAGCACAATATGTCTCACCATA 59.712 37.037 0.00 0.00 0.00 2.74
66 67 7.966812 TCTTAGCACAATATGTCTCACCATAT 58.033 34.615 0.00 0.00 39.20 1.78
67 68 8.432013 TCTTAGCACAATATGTCTCACCATATT 58.568 33.333 0.00 0.00 44.78 1.28
68 69 8.978874 TTAGCACAATATGTCTCACCATATTT 57.021 30.769 4.17 0.00 42.54 1.40
69 70 7.886629 AGCACAATATGTCTCACCATATTTT 57.113 32.000 4.17 0.00 42.54 1.82
70 71 8.297470 AGCACAATATGTCTCACCATATTTTT 57.703 30.769 4.17 0.00 42.54 1.94
71 72 9.407380 AGCACAATATGTCTCACCATATTTTTA 57.593 29.630 4.17 0.00 42.54 1.52
72 73 9.669353 GCACAATATGTCTCACCATATTTTTAG 57.331 33.333 4.17 0.00 42.54 1.85
79 80 7.771183 TGTCTCACCATATTTTTAGGAATTGC 58.229 34.615 0.00 0.00 0.00 3.56
80 81 7.615365 TGTCTCACCATATTTTTAGGAATTGCT 59.385 33.333 4.41 4.41 0.00 3.91
81 82 9.120538 GTCTCACCATATTTTTAGGAATTGCTA 57.879 33.333 2.04 2.04 0.00 3.49
82 83 9.342308 TCTCACCATATTTTTAGGAATTGCTAG 57.658 33.333 6.79 0.00 0.00 3.42
83 84 9.125026 CTCACCATATTTTTAGGAATTGCTAGT 57.875 33.333 6.79 0.00 0.00 2.57
84 85 9.474313 TCACCATATTTTTAGGAATTGCTAGTT 57.526 29.630 6.79 0.00 0.00 2.24
97 98 9.566432 AGGAATTGCTAGTTATTGAAGATAAGG 57.434 33.333 0.00 0.00 0.00 2.69
98 99 8.293157 GGAATTGCTAGTTATTGAAGATAAGGC 58.707 37.037 0.00 0.00 0.00 4.35
99 100 8.986929 AATTGCTAGTTATTGAAGATAAGGCT 57.013 30.769 0.00 0.00 0.00 4.58
102 103 9.547753 TTGCTAGTTATTGAAGATAAGGCTAAG 57.452 33.333 0.00 0.00 0.00 2.18
103 104 8.924303 TGCTAGTTATTGAAGATAAGGCTAAGA 58.076 33.333 0.00 0.00 0.00 2.10
104 105 9.418045 GCTAGTTATTGAAGATAAGGCTAAGAG 57.582 37.037 0.00 0.00 0.00 2.85
107 108 9.995003 AGTTATTGAAGATAAGGCTAAGAGATG 57.005 33.333 0.00 0.00 0.00 2.90
108 109 9.988815 GTTATTGAAGATAAGGCTAAGAGATGA 57.011 33.333 0.00 0.00 0.00 2.92
109 110 9.988815 TTATTGAAGATAAGGCTAAGAGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
110 111 6.412362 TGAAGATAAGGCTAAGAGATGACC 57.588 41.667 0.00 0.00 0.00 4.02
111 112 5.305644 TGAAGATAAGGCTAAGAGATGACCC 59.694 44.000 0.00 0.00 0.00 4.46
112 113 4.820775 AGATAAGGCTAAGAGATGACCCA 58.179 43.478 0.00 0.00 0.00 4.51
113 114 5.410602 AGATAAGGCTAAGAGATGACCCAT 58.589 41.667 0.00 0.00 0.00 4.00
114 115 5.848921 AGATAAGGCTAAGAGATGACCCATT 59.151 40.000 0.00 0.00 0.00 3.16
115 116 7.019388 AGATAAGGCTAAGAGATGACCCATTA 58.981 38.462 0.00 0.00 0.00 1.90
116 117 7.682028 AGATAAGGCTAAGAGATGACCCATTAT 59.318 37.037 0.00 0.00 0.00 1.28
117 118 8.917414 ATAAGGCTAAGAGATGACCCATTATA 57.083 34.615 0.00 0.00 0.00 0.98
118 119 6.865834 AGGCTAAGAGATGACCCATTATAG 57.134 41.667 0.00 0.00 0.00 1.31
119 120 6.565974 AGGCTAAGAGATGACCCATTATAGA 58.434 40.000 0.00 0.00 0.00 1.98
120 121 6.439058 AGGCTAAGAGATGACCCATTATAGAC 59.561 42.308 0.00 0.00 0.00 2.59
121 122 6.211584 GGCTAAGAGATGACCCATTATAGACA 59.788 42.308 0.00 0.00 0.00 3.41
122 123 7.093112 GGCTAAGAGATGACCCATTATAGACAT 60.093 40.741 0.00 0.00 0.00 3.06
123 124 8.317679 GCTAAGAGATGACCCATTATAGACATT 58.682 37.037 0.00 0.00 0.00 2.71
126 127 9.927081 AAGAGATGACCCATTATAGACATTTTT 57.073 29.630 0.00 0.00 0.00 1.94
127 128 9.566432 AGAGATGACCCATTATAGACATTTTTC 57.434 33.333 0.00 0.00 0.00 2.29
128 129 9.566432 GAGATGACCCATTATAGACATTTTTCT 57.434 33.333 0.00 0.00 0.00 2.52
129 130 9.927081 AGATGACCCATTATAGACATTTTTCTT 57.073 29.630 0.00 0.00 0.00 2.52
132 133 9.308000 TGACCCATTATAGACATTTTTCTTTGT 57.692 29.630 0.00 0.00 0.00 2.83
133 134 9.788960 GACCCATTATAGACATTTTTCTTTGTC 57.211 33.333 0.00 0.00 42.03 3.18
134 135 9.308000 ACCCATTATAGACATTTTTCTTTGTCA 57.692 29.630 5.91 0.00 43.72 3.58
140 141 8.868522 ATAGACATTTTTCTTTGTCATCTCCA 57.131 30.769 5.91 0.00 43.72 3.86
141 142 7.587037 AGACATTTTTCTTTGTCATCTCCAA 57.413 32.000 5.91 0.00 43.72 3.53
142 143 8.010733 AGACATTTTTCTTTGTCATCTCCAAA 57.989 30.769 5.91 0.00 43.72 3.28
143 144 8.645110 AGACATTTTTCTTTGTCATCTCCAAAT 58.355 29.630 5.91 0.00 43.72 2.32
144 145 9.264719 GACATTTTTCTTTGTCATCTCCAAATT 57.735 29.630 0.00 0.00 41.48 1.82
149 150 9.695526 TTTTCTTTGTCATCTCCAAATTACATG 57.304 29.630 0.00 0.00 31.85 3.21
150 151 6.855836 TCTTTGTCATCTCCAAATTACATGC 58.144 36.000 0.00 0.00 31.85 4.06
151 152 6.433716 TCTTTGTCATCTCCAAATTACATGCA 59.566 34.615 0.00 0.00 31.85 3.96
152 153 6.587206 TTGTCATCTCCAAATTACATGCAA 57.413 33.333 0.00 0.00 0.00 4.08
153 154 6.587206 TGTCATCTCCAAATTACATGCAAA 57.413 33.333 0.00 0.00 0.00 3.68
154 155 6.990798 TGTCATCTCCAAATTACATGCAAAA 58.009 32.000 0.00 0.00 0.00 2.44
155 156 7.440198 TGTCATCTCCAAATTACATGCAAAAA 58.560 30.769 0.00 0.00 0.00 1.94
156 157 8.095792 TGTCATCTCCAAATTACATGCAAAAAT 58.904 29.630 0.00 0.00 0.00 1.82
157 158 8.938906 GTCATCTCCAAATTACATGCAAAAATT 58.061 29.630 0.00 0.00 0.00 1.82
191 192 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
192 193 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
193 194 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
194 195 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
195 196 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
196 197 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
197 198 4.269183 TCAACCATTGTACATGCCCTAAG 58.731 43.478 0.00 0.00 0.00 2.18
198 199 2.654863 ACCATTGTACATGCCCTAAGC 58.345 47.619 0.00 0.00 44.14 3.09
199 200 2.242196 ACCATTGTACATGCCCTAAGCT 59.758 45.455 0.00 0.00 44.23 3.74
200 201 3.458118 ACCATTGTACATGCCCTAAGCTA 59.542 43.478 0.00 0.00 44.23 3.32
201 202 3.815401 CCATTGTACATGCCCTAAGCTAC 59.185 47.826 0.00 0.00 44.23 3.58
202 203 3.553828 TTGTACATGCCCTAAGCTACC 57.446 47.619 0.00 0.00 44.23 3.18
203 204 2.473070 TGTACATGCCCTAAGCTACCA 58.527 47.619 0.00 0.00 44.23 3.25
204 205 2.841266 TGTACATGCCCTAAGCTACCAA 59.159 45.455 0.00 0.00 44.23 3.67
205 206 2.420058 ACATGCCCTAAGCTACCAAC 57.580 50.000 0.00 0.00 44.23 3.77
206 207 1.633432 ACATGCCCTAAGCTACCAACA 59.367 47.619 0.00 0.00 44.23 3.33
207 208 2.041081 ACATGCCCTAAGCTACCAACAA 59.959 45.455 0.00 0.00 44.23 2.83
208 209 2.961531 TGCCCTAAGCTACCAACAAA 57.038 45.000 0.00 0.00 44.23 2.83
209 210 3.231207 TGCCCTAAGCTACCAACAAAA 57.769 42.857 0.00 0.00 44.23 2.44
210 211 3.567397 TGCCCTAAGCTACCAACAAAAA 58.433 40.909 0.00 0.00 44.23 1.94
211 212 3.319689 TGCCCTAAGCTACCAACAAAAAC 59.680 43.478 0.00 0.00 44.23 2.43
212 213 3.572682 GCCCTAAGCTACCAACAAAAACT 59.427 43.478 0.00 0.00 38.99 2.66
213 214 4.558697 GCCCTAAGCTACCAACAAAAACTG 60.559 45.833 0.00 0.00 38.99 3.16
214 215 4.546570 CCTAAGCTACCAACAAAAACTGC 58.453 43.478 0.00 0.00 0.00 4.40
215 216 4.037446 CCTAAGCTACCAACAAAAACTGCA 59.963 41.667 0.00 0.00 0.00 4.41
216 217 4.670896 AAGCTACCAACAAAAACTGCAT 57.329 36.364 0.00 0.00 0.00 3.96
217 218 4.670896 AGCTACCAACAAAAACTGCATT 57.329 36.364 0.00 0.00 0.00 3.56
218 219 5.022282 AGCTACCAACAAAAACTGCATTT 57.978 34.783 0.00 0.00 0.00 2.32
219 220 5.427378 AGCTACCAACAAAAACTGCATTTT 58.573 33.333 0.00 0.00 42.55 1.82
231 232 9.771915 CAAAAACTGCATTTTGTTTTAGACAAT 57.228 25.926 14.63 0.00 46.99 2.71
235 236 8.298030 ACTGCATTTTGTTTTAGACAATTAGC 57.702 30.769 0.00 0.00 46.99 3.09
236 237 8.143835 ACTGCATTTTGTTTTAGACAATTAGCT 58.856 29.630 0.00 0.00 46.99 3.32
237 238 8.296799 TGCATTTTGTTTTAGACAATTAGCTG 57.703 30.769 0.00 0.00 46.99 4.24
238 239 7.095691 TGCATTTTGTTTTAGACAATTAGCTGC 60.096 33.333 0.00 0.00 46.99 5.25
239 240 7.095691 GCATTTTGTTTTAGACAATTAGCTGCA 60.096 33.333 1.02 0.00 46.99 4.41
240 241 8.763356 CATTTTGTTTTAGACAATTAGCTGCAA 58.237 29.630 1.02 0.00 46.99 4.08
241 242 7.928908 TTTGTTTTAGACAATTAGCTGCAAG 57.071 32.000 1.02 0.00 46.99 4.01
242 243 6.875948 TGTTTTAGACAATTAGCTGCAAGA 57.124 33.333 1.02 0.00 34.69 3.02
243 244 6.902341 TGTTTTAGACAATTAGCTGCAAGAG 58.098 36.000 1.02 0.00 34.69 2.85
244 245 6.568462 TGTTTTAGACAATTAGCTGCAAGAGC 60.568 38.462 1.02 0.00 41.01 4.09
245 246 9.383183 TGTTTTAGACAATTAGCTGCAAGAGCC 62.383 40.741 1.02 0.00 41.38 4.70
252 253 2.761071 GCTGCAAGAGCCTACAGAC 58.239 57.895 0.00 0.00 42.54 3.51
253 254 0.036952 GCTGCAAGAGCCTACAGACA 60.037 55.000 0.00 0.00 42.54 3.41
254 255 1.609061 GCTGCAAGAGCCTACAGACAA 60.609 52.381 0.00 0.00 42.54 3.18
255 256 2.771089 CTGCAAGAGCCTACAGACAAA 58.229 47.619 0.00 0.00 41.13 2.83
256 257 2.481952 CTGCAAGAGCCTACAGACAAAC 59.518 50.000 0.00 0.00 41.13 2.93
257 258 1.461127 GCAAGAGCCTACAGACAAACG 59.539 52.381 0.00 0.00 33.58 3.60
258 259 2.755650 CAAGAGCCTACAGACAAACGT 58.244 47.619 0.00 0.00 0.00 3.99
259 260 3.859627 GCAAGAGCCTACAGACAAACGTA 60.860 47.826 0.00 0.00 33.58 3.57
260 261 3.572604 AGAGCCTACAGACAAACGTAC 57.427 47.619 0.00 0.00 0.00 3.67
261 262 3.155501 AGAGCCTACAGACAAACGTACT 58.844 45.455 0.00 0.00 0.00 2.73
262 263 3.573110 AGAGCCTACAGACAAACGTACTT 59.427 43.478 0.00 0.00 0.00 2.24
263 264 4.763793 AGAGCCTACAGACAAACGTACTTA 59.236 41.667 0.00 0.00 0.00 2.24
264 265 5.418209 AGAGCCTACAGACAAACGTACTTAT 59.582 40.000 0.00 0.00 0.00 1.73
265 266 5.648572 AGCCTACAGACAAACGTACTTATC 58.351 41.667 0.00 0.00 0.00 1.75
266 267 4.498323 GCCTACAGACAAACGTACTTATCG 59.502 45.833 0.00 0.00 0.00 2.92
267 268 5.634896 CCTACAGACAAACGTACTTATCGT 58.365 41.667 0.00 0.00 43.45 3.73
268 269 6.675486 GCCTACAGACAAACGTACTTATCGTA 60.675 42.308 0.00 0.00 40.69 3.43
269 270 6.684555 CCTACAGACAAACGTACTTATCGTAC 59.315 42.308 0.00 0.00 44.04 3.67
279 280 3.712091 ACTTATCGTACACCAGCTAGC 57.288 47.619 6.62 6.62 0.00 3.42
280 281 3.288964 ACTTATCGTACACCAGCTAGCT 58.711 45.455 12.68 12.68 0.00 3.32
281 282 3.315749 ACTTATCGTACACCAGCTAGCTC 59.684 47.826 16.15 0.95 0.00 4.09
282 283 1.033574 ATCGTACACCAGCTAGCTCC 58.966 55.000 16.15 0.00 0.00 4.70
283 284 0.034380 TCGTACACCAGCTAGCTCCT 60.034 55.000 16.15 0.00 0.00 3.69
284 285 0.101399 CGTACACCAGCTAGCTCCTG 59.899 60.000 16.15 14.97 0.00 3.86
285 286 1.187087 GTACACCAGCTAGCTCCTGT 58.813 55.000 16.15 19.83 0.00 4.00
286 287 2.376109 GTACACCAGCTAGCTCCTGTA 58.624 52.381 16.15 18.81 0.00 2.74
287 288 1.479709 ACACCAGCTAGCTCCTGTAG 58.520 55.000 16.15 1.93 0.00 2.74
301 302 4.979388 CTCCTGTAGCTCTGCAATTTTTC 58.021 43.478 0.00 0.00 0.00 2.29
302 303 3.758554 TCCTGTAGCTCTGCAATTTTTCC 59.241 43.478 0.00 0.00 0.00 3.13
303 304 3.760684 CCTGTAGCTCTGCAATTTTTCCT 59.239 43.478 0.00 0.00 0.00 3.36
304 305 4.219288 CCTGTAGCTCTGCAATTTTTCCTT 59.781 41.667 0.00 0.00 0.00 3.36
305 306 5.376854 TGTAGCTCTGCAATTTTTCCTTC 57.623 39.130 0.00 0.00 0.00 3.46
306 307 4.826733 TGTAGCTCTGCAATTTTTCCTTCA 59.173 37.500 0.00 0.00 0.00 3.02
307 308 5.477984 TGTAGCTCTGCAATTTTTCCTTCAT 59.522 36.000 0.00 0.00 0.00 2.57
308 309 5.479124 AGCTCTGCAATTTTTCCTTCATT 57.521 34.783 0.00 0.00 0.00 2.57
309 310 5.476614 AGCTCTGCAATTTTTCCTTCATTC 58.523 37.500 0.00 0.00 0.00 2.67
310 311 5.011329 AGCTCTGCAATTTTTCCTTCATTCA 59.989 36.000 0.00 0.00 0.00 2.57
311 312 5.119743 GCTCTGCAATTTTTCCTTCATTCAC 59.880 40.000 0.00 0.00 0.00 3.18
312 313 5.540911 TCTGCAATTTTTCCTTCATTCACC 58.459 37.500 0.00 0.00 0.00 4.02
313 314 5.305128 TCTGCAATTTTTCCTTCATTCACCT 59.695 36.000 0.00 0.00 0.00 4.00
314 315 5.540911 TGCAATTTTTCCTTCATTCACCTC 58.459 37.500 0.00 0.00 0.00 3.85
315 316 5.070180 TGCAATTTTTCCTTCATTCACCTCA 59.930 36.000 0.00 0.00 0.00 3.86
316 317 5.406477 GCAATTTTTCCTTCATTCACCTCAC 59.594 40.000 0.00 0.00 0.00 3.51
317 318 5.728637 ATTTTTCCTTCATTCACCTCACC 57.271 39.130 0.00 0.00 0.00 4.02
318 319 4.453480 TTTTCCTTCATTCACCTCACCT 57.547 40.909 0.00 0.00 0.00 4.00
363 369 1.070275 TCTGGCTGTCTGTGCAGTG 59.930 57.895 0.00 0.00 38.65 3.66
372 378 2.908428 TGTGCAGTGCAAGCCCAG 60.908 61.111 21.67 0.00 41.47 4.45
376 382 2.678934 CAGTGCAAGCCCAGGCAT 60.679 61.111 12.03 0.00 42.75 4.40
377 383 2.362120 AGTGCAAGCCCAGGCATC 60.362 61.111 12.03 0.00 42.75 3.91
378 384 2.362120 GTGCAAGCCCAGGCATCT 60.362 61.111 12.03 0.00 42.75 2.90
380 386 2.832201 GCAAGCCCAGGCATCTCC 60.832 66.667 12.03 0.00 44.88 3.71
381 387 2.515523 CAAGCCCAGGCATCTCCG 60.516 66.667 12.03 0.00 44.88 4.63
382 388 2.688666 AAGCCCAGGCATCTCCGA 60.689 61.111 12.03 0.00 44.88 4.55
383 389 2.739996 AAGCCCAGGCATCTCCGAG 61.740 63.158 12.03 0.00 44.88 4.63
418 424 7.918562 TGAAGGTCAAAGTAAATAGCAAAACAC 59.081 33.333 0.00 0.00 0.00 3.32
454 465 1.451028 GGCCTTGCTCGCTCATCTT 60.451 57.895 0.00 0.00 0.00 2.40
482 496 7.171337 ACACATGAATCATTTTAAAAGTGCCAC 59.829 33.333 6.79 0.00 0.00 5.01
520 534 3.065233 GCAAACAACATCGCCATCAGATA 59.935 43.478 0.00 0.00 0.00 1.98
589 626 4.799473 CAGATTGCACCACGCGCG 62.799 66.667 30.96 30.96 46.97 6.86
684 745 3.045634 TCCACAACAGGAAGAAAGGAGA 58.954 45.455 0.00 0.00 33.93 3.71
686 747 3.406764 CACAACAGGAAGAAAGGAGAGG 58.593 50.000 0.00 0.00 0.00 3.69
687 748 3.071602 CACAACAGGAAGAAAGGAGAGGA 59.928 47.826 0.00 0.00 0.00 3.71
730 827 3.119849 ACACACACTTTTTGTCAGTGAGC 60.120 43.478 7.06 0.00 43.90 4.26
757 856 3.074412 GCCACAGTGTAATTGTAGCAGT 58.926 45.455 0.00 0.00 40.59 4.40
758 857 3.120199 GCCACAGTGTAATTGTAGCAGTG 60.120 47.826 0.00 0.00 40.59 3.66
869 974 0.819259 CCCCGCCATGTTGATCGATT 60.819 55.000 0.00 0.00 0.00 3.34
872 977 1.268184 CCGCCATGTTGATCGATTGTG 60.268 52.381 0.00 0.00 0.00 3.33
873 978 1.831343 GCCATGTTGATCGATTGTGC 58.169 50.000 0.00 0.00 0.00 4.57
874 979 1.402968 GCCATGTTGATCGATTGTGCT 59.597 47.619 0.00 0.00 0.00 4.40
884 997 2.897436 TCGATTGTGCTTCATGAGAGG 58.103 47.619 0.00 0.00 0.00 3.69
893 1006 2.287547 GCTTCATGAGAGGTAGAGCTCG 60.288 54.545 8.37 0.00 33.89 5.03
908 1021 1.586564 CTCGGCCGCTAGAAGTTCG 60.587 63.158 23.51 0.00 0.00 3.95
915 1065 1.134530 CGCTAGAAGTTCGCCTGACG 61.135 60.000 0.00 0.00 45.62 4.35
918 1068 0.170561 TAGAAGTTCGCCTGACGCTC 59.829 55.000 0.00 0.00 43.23 5.03
930 1080 2.126307 ACGCTCGCAGTAGCACAG 60.126 61.111 3.90 0.00 42.91 3.66
954 1109 0.668706 CCACACCACTCTGCTCTTCG 60.669 60.000 0.00 0.00 0.00 3.79
961 1116 0.246086 ACTCTGCTCTTCGGCTTCTG 59.754 55.000 0.00 0.00 0.00 3.02
965 1120 0.532573 TGCTCTTCGGCTTCTGGTAG 59.467 55.000 0.00 0.00 0.00 3.18
1065 1230 1.219393 GGAGCCGTTCCTCCTTCAG 59.781 63.158 6.73 0.00 46.39 3.02
1090 1258 2.031012 CCTGCTGCTCCGTCAACA 59.969 61.111 0.00 0.00 0.00 3.33
1100 1268 2.184167 CCGTCAACAACAAGGGCGT 61.184 57.895 0.00 0.00 0.00 5.68
1311 1515 2.348620 TCCGACGACGAGGAGGAA 59.651 61.111 9.28 0.00 42.66 3.36
1354 1558 1.986378 GCGACTGTAAGCACTACACTG 59.014 52.381 3.30 0.00 37.60 3.66
1355 1559 2.596452 CGACTGTAAGCACTACACTGG 58.404 52.381 0.00 0.00 37.60 4.00
1366 1570 1.620819 ACTACACTGGTCTGCTTCTGG 59.379 52.381 0.00 0.00 0.00 3.86
1373 1577 1.294659 GGTCTGCTTCTGGCTTCACG 61.295 60.000 0.00 0.00 42.39 4.35
1403 1607 3.520569 GAGAATTCTCCTCTGTCAGCAC 58.479 50.000 22.68 0.00 37.02 4.40
1430 1634 4.799564 TGCCCACAAATAATTCACCTTC 57.200 40.909 0.00 0.00 0.00 3.46
1449 1653 2.771089 TCGTTTCATGCTCTGCTTCTT 58.229 42.857 0.00 0.00 0.00 2.52
1450 1654 2.481568 TCGTTTCATGCTCTGCTTCTTG 59.518 45.455 0.00 0.00 0.00 3.02
1451 1655 2.481568 CGTTTCATGCTCTGCTTCTTGA 59.518 45.455 0.00 0.00 0.00 3.02
1452 1656 3.126514 CGTTTCATGCTCTGCTTCTTGAT 59.873 43.478 0.00 0.00 0.00 2.57
1453 1657 4.330894 CGTTTCATGCTCTGCTTCTTGATA 59.669 41.667 0.00 0.00 0.00 2.15
1454 1658 5.163824 CGTTTCATGCTCTGCTTCTTGATAA 60.164 40.000 0.00 0.00 0.00 1.75
1455 1659 6.615088 GTTTCATGCTCTGCTTCTTGATAAA 58.385 36.000 0.00 0.00 0.00 1.40
1503 1713 2.126071 ACAAGCCATCGTCGACGG 60.126 61.111 35.05 21.46 40.29 4.79
1532 1748 2.742372 CCGCCACCCGACAAGAAG 60.742 66.667 0.00 0.00 40.02 2.85
1536 1758 1.296715 CCACCCGACAAGAAGGAGG 59.703 63.158 0.00 0.00 0.00 4.30
1565 1787 0.545548 AGGAGTGGAGGAAGGTGGTC 60.546 60.000 0.00 0.00 0.00 4.02
1578 1800 1.970114 GTGGTCTCGTCGTGGGAGA 60.970 63.158 0.00 0.00 38.18 3.71
1581 1803 2.045242 TCTCGTCGTGGGAGAGGG 60.045 66.667 0.00 0.00 35.70 4.30
1607 1829 2.124695 GACATCGCAAGGGTCCCC 60.125 66.667 3.51 0.00 36.49 4.81
1609 1831 4.096003 CATCGCAAGGGTCCCCGT 62.096 66.667 3.51 0.00 41.95 5.28
1733 1955 2.913765 CGAGGAGATGAGCGCGGAT 61.914 63.158 8.83 0.00 0.00 4.18
1763 1989 1.226974 CATGGTCGACCTGTAGCGG 60.227 63.158 33.39 12.19 36.82 5.52
1787 2013 1.294659 GAGTGCTCCTTGTCCAAGCG 61.295 60.000 1.40 0.00 38.90 4.68
1811 2037 2.031616 TGCAGCTGGCTGAGTGAC 59.968 61.111 24.40 8.22 46.30 3.67
1812 2038 3.117171 GCAGCTGGCTGAGTGACG 61.117 66.667 24.40 0.00 46.30 4.35
1813 2039 2.433838 CAGCTGGCTGAGTGACGG 60.434 66.667 16.59 0.00 46.30 4.79
1814 2040 2.601666 AGCTGGCTGAGTGACGGA 60.602 61.111 0.00 0.00 29.21 4.69
1815 2041 2.433318 GCTGGCTGAGTGACGGAC 60.433 66.667 0.00 0.00 29.21 4.79
1816 2042 2.126307 CTGGCTGAGTGACGGACG 60.126 66.667 0.00 0.00 35.19 4.79
1817 2043 2.596338 TGGCTGAGTGACGGACGA 60.596 61.111 0.00 0.00 35.19 4.20
1818 2044 1.938657 CTGGCTGAGTGACGGACGAT 61.939 60.000 0.00 0.00 35.19 3.73
1819 2045 1.517257 GGCTGAGTGACGGACGATG 60.517 63.158 0.00 0.00 0.00 3.84
1821 2047 1.508545 CTGAGTGACGGACGATGCT 59.491 57.895 0.00 0.00 0.00 3.79
1822 2048 0.109086 CTGAGTGACGGACGATGCTT 60.109 55.000 0.00 0.00 0.00 3.91
1823 2049 0.109272 TGAGTGACGGACGATGCTTC 60.109 55.000 0.00 0.00 0.00 3.86
1832 2058 4.513519 CGATGCTTCGGTGCCTTA 57.486 55.556 13.82 0.00 41.74 2.69
1834 2060 0.652592 CGATGCTTCGGTGCCTTAAG 59.347 55.000 13.82 0.00 41.74 1.85
1835 2061 0.378610 GATGCTTCGGTGCCTTAAGC 59.621 55.000 14.40 14.40 44.63 3.09
1836 2062 1.032114 ATGCTTCGGTGCCTTAAGCC 61.032 55.000 16.97 0.00 43.93 4.35
1837 2063 1.674322 GCTTCGGTGCCTTAAGCCA 60.674 57.895 11.69 0.00 42.71 4.75
1838 2064 1.923227 GCTTCGGTGCCTTAAGCCAC 61.923 60.000 8.05 8.05 42.71 5.01
1839 2065 1.302993 TTCGGTGCCTTAAGCCACC 60.303 57.895 22.78 22.78 42.71 4.61
1840 2066 1.774894 TTCGGTGCCTTAAGCCACCT 61.775 55.000 27.75 0.00 42.71 4.00
1841 2067 0.905809 TCGGTGCCTTAAGCCACCTA 60.906 55.000 27.75 17.86 42.71 3.08
1843 2069 1.810412 CGGTGCCTTAAGCCACCTATC 60.810 57.143 27.75 7.17 42.71 2.08
1844 2070 1.490910 GGTGCCTTAAGCCACCTATCT 59.509 52.381 24.78 0.00 42.71 1.98
1845 2071 2.092375 GGTGCCTTAAGCCACCTATCTT 60.092 50.000 24.78 0.00 42.71 2.40
1846 2072 3.621558 GTGCCTTAAGCCACCTATCTTT 58.378 45.455 5.26 0.00 42.71 2.52
1847 2073 3.378427 GTGCCTTAAGCCACCTATCTTTG 59.622 47.826 5.26 0.00 42.71 2.77
1848 2074 3.265737 TGCCTTAAGCCACCTATCTTTGA 59.734 43.478 0.00 0.00 42.71 2.69
1849 2075 4.079787 TGCCTTAAGCCACCTATCTTTGAT 60.080 41.667 0.00 0.00 42.71 2.57
1850 2076 4.517075 GCCTTAAGCCACCTATCTTTGATC 59.483 45.833 0.00 0.00 34.35 2.92
1853 2235 6.830838 CCTTAAGCCACCTATCTTTGATCTTT 59.169 38.462 0.00 0.00 0.00 2.52
1892 2275 9.672673 AAATACAGTTTAGACATGTTAGATGCT 57.327 29.630 0.00 0.00 0.00 3.79
1914 2311 7.766219 GCTCAAGCAATGTTCAAAATATCAT 57.234 32.000 0.00 0.00 41.59 2.45
1916 2313 7.042925 GCTCAAGCAATGTTCAAAATATCATCC 60.043 37.037 0.00 0.00 41.59 3.51
1917 2314 6.974048 TCAAGCAATGTTCAAAATATCATCCG 59.026 34.615 0.00 0.00 0.00 4.18
1918 2315 6.698008 AGCAATGTTCAAAATATCATCCGA 57.302 33.333 0.00 0.00 0.00 4.55
1920 2317 7.719483 AGCAATGTTCAAAATATCATCCGATT 58.281 30.769 0.00 0.00 32.73 3.34
1921 2318 7.864379 AGCAATGTTCAAAATATCATCCGATTC 59.136 33.333 0.00 0.00 32.73 2.52
1922 2319 7.648908 GCAATGTTCAAAATATCATCCGATTCA 59.351 33.333 0.00 0.00 32.73 2.57
1924 2321 7.864108 TGTTCAAAATATCATCCGATTCACT 57.136 32.000 0.00 0.00 32.73 3.41
1925 2322 7.696755 TGTTCAAAATATCATCCGATTCACTG 58.303 34.615 0.00 0.00 32.73 3.66
1926 2323 7.552330 TGTTCAAAATATCATCCGATTCACTGA 59.448 33.333 0.00 0.00 32.73 3.41
1928 2325 8.091385 TCAAAATATCATCCGATTCACTGATG 57.909 34.615 0.00 0.00 40.13 3.07
1930 2327 8.992073 CAAAATATCATCCGATTCACTGATGTA 58.008 33.333 0.00 0.00 39.86 2.29
1931 2328 8.539770 AAATATCATCCGATTCACTGATGTAC 57.460 34.615 0.00 0.00 39.86 2.90
1932 2329 4.322080 TCATCCGATTCACTGATGTACC 57.678 45.455 0.00 0.00 39.86 3.34
1933 2330 2.863401 TCCGATTCACTGATGTACCG 57.137 50.000 0.00 0.00 0.00 4.02
1935 2332 1.209128 CGATTCACTGATGTACCGGC 58.791 55.000 0.00 0.00 0.00 6.13
1936 2333 1.583054 GATTCACTGATGTACCGGCC 58.417 55.000 0.00 0.00 0.00 6.13
1937 2334 0.179084 ATTCACTGATGTACCGGCCG 60.179 55.000 21.04 21.04 0.00 6.13
1938 2335 1.252215 TTCACTGATGTACCGGCCGA 61.252 55.000 30.73 6.75 0.00 5.54
1939 2336 1.040893 TCACTGATGTACCGGCCGAT 61.041 55.000 30.73 14.28 0.00 4.18
1940 2337 0.179084 CACTGATGTACCGGCCGATT 60.179 55.000 30.73 16.21 0.00 3.34
1941 2338 0.104304 ACTGATGTACCGGCCGATTC 59.896 55.000 30.73 8.40 0.00 2.52
1942 2339 0.104120 CTGATGTACCGGCCGATTCA 59.896 55.000 30.73 15.95 0.00 2.57
1943 2340 0.756294 TGATGTACCGGCCGATTCAT 59.244 50.000 30.73 21.12 0.00 2.57
1944 2341 1.270094 TGATGTACCGGCCGATTCATC 60.270 52.381 27.35 27.35 34.28 2.92
1945 2342 0.756294 ATGTACCGGCCGATTCATCA 59.244 50.000 30.73 16.36 0.00 3.07
1946 2343 0.179094 TGTACCGGCCGATTCATCAC 60.179 55.000 30.73 4.02 0.00 3.06
1947 2344 0.104304 GTACCGGCCGATTCATCACT 59.896 55.000 30.73 0.00 0.00 3.41
1948 2345 0.828022 TACCGGCCGATTCATCACTT 59.172 50.000 30.73 0.00 0.00 3.16
1949 2346 0.828022 ACCGGCCGATTCATCACTTA 59.172 50.000 30.73 0.00 0.00 2.24
1950 2347 1.416401 ACCGGCCGATTCATCACTTAT 59.584 47.619 30.73 0.00 0.00 1.73
1951 2348 2.631062 ACCGGCCGATTCATCACTTATA 59.369 45.455 30.73 0.00 0.00 0.98
1952 2349 3.254060 CCGGCCGATTCATCACTTATAG 58.746 50.000 30.73 0.00 0.00 1.31
1953 2350 3.056821 CCGGCCGATTCATCACTTATAGA 60.057 47.826 30.73 0.00 0.00 1.98
1954 2351 4.382040 CCGGCCGATTCATCACTTATAGAT 60.382 45.833 30.73 0.00 0.00 1.98
1955 2352 4.564372 CGGCCGATTCATCACTTATAGATG 59.436 45.833 24.07 0.00 43.25 2.90
1956 2353 4.872691 GGCCGATTCATCACTTATAGATGG 59.127 45.833 0.00 0.00 42.38 3.51
1957 2354 4.872691 GCCGATTCATCACTTATAGATGGG 59.127 45.833 0.00 0.00 42.38 4.00
1958 2355 5.569630 GCCGATTCATCACTTATAGATGGGT 60.570 44.000 0.00 0.00 42.38 4.51
1959 2356 5.871524 CCGATTCATCACTTATAGATGGGTG 59.128 44.000 0.00 0.00 42.38 4.61
1960 2357 5.871524 CGATTCATCACTTATAGATGGGTGG 59.128 44.000 0.00 0.00 42.38 4.61
1961 2358 5.567037 TTCATCACTTATAGATGGGTGGG 57.433 43.478 0.00 0.00 42.38 4.61
1962 2359 4.566837 TCATCACTTATAGATGGGTGGGT 58.433 43.478 0.00 0.00 42.38 4.51
1963 2360 4.347876 TCATCACTTATAGATGGGTGGGTG 59.652 45.833 0.00 0.00 42.38 4.61
1964 2361 3.045634 TCACTTATAGATGGGTGGGTGG 58.954 50.000 0.00 0.00 0.00 4.61
1965 2362 1.774856 ACTTATAGATGGGTGGGTGGC 59.225 52.381 0.00 0.00 0.00 5.01
1968 2365 0.702356 ATAGATGGGTGGGTGGCCAT 60.702 55.000 9.72 0.00 0.00 4.40
1979 2376 5.518367 GGGTGGGTGGCCATTAAGATTATAT 60.518 44.000 9.72 0.00 0.00 0.86
2039 2436 6.818142 TCGCTCTGACAAATGATTAATCAGAA 59.182 34.615 21.97 0.44 43.81 3.02
2040 2437 7.334171 TCGCTCTGACAAATGATTAATCAGAAA 59.666 33.333 21.97 0.08 43.81 2.52
2041 2438 8.127327 CGCTCTGACAAATGATTAATCAGAAAT 58.873 33.333 21.97 9.09 43.81 2.17
2042 2439 9.448294 GCTCTGACAAATGATTAATCAGAAATC 57.552 33.333 21.97 16.44 43.81 2.17
2047 2444 9.591404 GACAAATGATTAATCAGAAATCTAGCG 57.409 33.333 21.97 5.56 40.64 4.26
2048 2445 9.330063 ACAAATGATTAATCAGAAATCTAGCGA 57.670 29.630 21.97 0.00 40.64 4.93
2058 2455 7.875316 TCAGAAATCTAGCGATTAATAGTGC 57.125 36.000 0.00 0.00 38.89 4.40
2059 2456 7.661968 TCAGAAATCTAGCGATTAATAGTGCT 58.338 34.615 12.34 12.34 38.89 4.40
2060 2457 8.793592 TCAGAAATCTAGCGATTAATAGTGCTA 58.206 33.333 13.06 13.06 38.89 3.49
2067 2464 4.021894 AGCGATTAATAGTGCTAGACCCAG 60.022 45.833 7.37 0.00 35.56 4.45
2068 2465 4.022242 GCGATTAATAGTGCTAGACCCAGA 60.022 45.833 0.00 0.00 0.00 3.86
2087 2486 4.383552 CCAGATGGTCAAAACCCAAAACAA 60.384 41.667 0.00 0.00 45.83 2.83
2108 2513 1.676967 CTTCCCCTTCAGCCTGCAC 60.677 63.158 0.00 0.00 0.00 4.57
2122 2527 2.708051 CCTGCACATCACACTTCATCT 58.292 47.619 0.00 0.00 0.00 2.90
2130 2535 5.461407 CACATCACACTTCATCTCCTATTCG 59.539 44.000 0.00 0.00 0.00 3.34
2134 2539 7.582667 TCACACTTCATCTCCTATTCGATAA 57.417 36.000 0.00 0.00 0.00 1.75
2138 2543 5.540337 ACTTCATCTCCTATTCGATAAGGCA 59.460 40.000 8.38 0.00 0.00 4.75
2158 2563 4.094887 GGCATGTGTTGTAGTATTGTCCTG 59.905 45.833 0.00 0.00 0.00 3.86
2159 2564 4.437390 GCATGTGTTGTAGTATTGTCCTGC 60.437 45.833 0.00 0.00 0.00 4.85
2163 2569 5.238432 TGTGTTGTAGTATTGTCCTGCTTTG 59.762 40.000 0.00 0.00 0.00 2.77
2167 2573 7.499563 TGTTGTAGTATTGTCCTGCTTTGTTTA 59.500 33.333 0.00 0.00 0.00 2.01
2213 2619 8.777578 ATGTAATATGTACTTCCTCTGTACCA 57.222 34.615 0.00 0.00 39.42 3.25
2214 2620 8.004087 TGTAATATGTACTTCCTCTGTACCAC 57.996 38.462 0.00 0.00 39.42 4.16
2215 2621 7.616542 TGTAATATGTACTTCCTCTGTACCACA 59.383 37.037 0.00 0.00 39.42 4.17
2216 2622 7.490657 AATATGTACTTCCTCTGTACCACAA 57.509 36.000 0.00 0.00 39.42 3.33
2217 2623 7.676683 ATATGTACTTCCTCTGTACCACAAT 57.323 36.000 0.00 0.00 39.42 2.71
2218 2624 8.777578 ATATGTACTTCCTCTGTACCACAATA 57.222 34.615 0.00 0.00 39.42 1.90
2219 2625 6.276832 TGTACTTCCTCTGTACCACAATAC 57.723 41.667 0.00 0.00 39.42 1.89
2220 2626 6.014647 TGTACTTCCTCTGTACCACAATACT 58.985 40.000 0.00 0.00 39.42 2.12
2221 2627 6.495872 TGTACTTCCTCTGTACCACAATACTT 59.504 38.462 0.00 0.00 39.42 2.24
2222 2628 5.794894 ACTTCCTCTGTACCACAATACTTG 58.205 41.667 0.00 0.00 0.00 3.16
2223 2629 5.307196 ACTTCCTCTGTACCACAATACTTGT 59.693 40.000 0.00 0.00 46.75 3.16
2234 2640 4.553330 ACAATACTTGTGGTACAGAGGG 57.447 45.455 0.00 0.00 43.48 4.30
2235 2641 4.164981 ACAATACTTGTGGTACAGAGGGA 58.835 43.478 0.00 0.00 43.48 4.20
2236 2642 4.223032 ACAATACTTGTGGTACAGAGGGAG 59.777 45.833 0.00 0.00 43.48 4.30
2251 2657 7.349412 ACAGAGGGAGTAGTTATGTATTGAC 57.651 40.000 0.00 0.00 0.00 3.18
2254 2660 7.869937 CAGAGGGAGTAGTTATGTATTGACATG 59.130 40.741 0.82 0.00 46.11 3.21
2268 2674 5.726980 ATTGACATGGTGTTGCACTATTT 57.273 34.783 0.00 0.00 33.40 1.40
2271 2677 6.641169 TGACATGGTGTTGCACTATTTAAA 57.359 33.333 0.00 0.00 33.40 1.52
2272 2678 6.676950 TGACATGGTGTTGCACTATTTAAAG 58.323 36.000 0.00 0.00 33.40 1.85
2273 2679 6.024552 ACATGGTGTTGCACTATTTAAAGG 57.975 37.500 0.00 0.00 33.40 3.11
2274 2680 4.513198 TGGTGTTGCACTATTTAAAGGC 57.487 40.909 0.00 0.00 34.40 4.35
2276 2682 4.586841 TGGTGTTGCACTATTTAAAGGCTT 59.413 37.500 0.00 0.00 34.40 4.35
2277 2683 5.069781 TGGTGTTGCACTATTTAAAGGCTTT 59.930 36.000 17.76 17.76 34.40 3.51
2291 2697 9.777297 ATTTAAAGGCTTTGAACACAATAATGT 57.223 25.926 22.32 0.00 41.61 2.71
2293 2699 9.606631 TTAAAGGCTTTGAACACAATAATGTTT 57.393 25.926 22.32 0.00 42.89 2.83
2299 2705 7.042523 GCTTTGAACACAATAATGTTTGCTTCT 60.043 33.333 0.00 0.00 42.89 2.85
2320 2726 7.061557 GCTTCTATTTTTAGCTTTCAGTGCTTG 59.938 37.037 0.00 0.00 41.46 4.01
2322 2728 5.789643 ATTTTTAGCTTTCAGTGCTTGGA 57.210 34.783 0.00 0.00 41.46 3.53
2325 2731 1.322442 AGCTTTCAGTGCTTGGAACC 58.678 50.000 0.00 0.00 37.52 3.62
2326 2732 1.133668 AGCTTTCAGTGCTTGGAACCT 60.134 47.619 0.00 0.00 37.52 3.50
2327 2733 1.000938 GCTTTCAGTGCTTGGAACCTG 60.001 52.381 0.00 0.00 0.00 4.00
2328 2734 1.610522 CTTTCAGTGCTTGGAACCTGG 59.389 52.381 0.00 0.00 0.00 4.45
2340 2746 8.860088 GTGCTTGGAACCTGGAATTATTAATAT 58.140 33.333 0.00 0.00 0.00 1.28
2389 2795 9.698309 TGACTGATTTCCGATTAATCTCTTATC 57.302 33.333 13.45 10.78 34.00 1.75
2390 2796 9.145865 GACTGATTTCCGATTAATCTCTTATCC 57.854 37.037 13.45 0.00 34.00 2.59
2391 2797 8.875168 ACTGATTTCCGATTAATCTCTTATCCT 58.125 33.333 13.45 0.00 34.00 3.24
2393 2799 8.870116 TGATTTCCGATTAATCTCTTATCCTCA 58.130 33.333 13.45 4.01 34.00 3.86
2394 2800 9.712305 GATTTCCGATTAATCTCTTATCCTCAA 57.288 33.333 13.45 0.00 0.00 3.02
2396 2802 9.712305 TTTCCGATTAATCTCTTATCCTCAATC 57.288 33.333 13.45 0.00 0.00 2.67
2398 2804 8.870116 TCCGATTAATCTCTTATCCTCAATCAA 58.130 33.333 13.45 0.00 0.00 2.57
2399 2805 8.930760 CCGATTAATCTCTTATCCTCAATCAAC 58.069 37.037 13.45 0.00 0.00 3.18
2400 2806 8.930760 CGATTAATCTCTTATCCTCAATCAACC 58.069 37.037 13.45 0.00 0.00 3.77
2401 2807 8.839310 ATTAATCTCTTATCCTCAATCAACCG 57.161 34.615 0.00 0.00 0.00 4.44
2402 2808 6.485830 AATCTCTTATCCTCAATCAACCGA 57.514 37.500 0.00 0.00 0.00 4.69
2403 2809 5.932619 TCTCTTATCCTCAATCAACCGAA 57.067 39.130 0.00 0.00 0.00 4.30
2404 2810 6.294361 TCTCTTATCCTCAATCAACCGAAA 57.706 37.500 0.00 0.00 0.00 3.46
2405 2811 6.106673 TCTCTTATCCTCAATCAACCGAAAC 58.893 40.000 0.00 0.00 0.00 2.78
2406 2812 4.868171 TCTTATCCTCAATCAACCGAAACG 59.132 41.667 0.00 0.00 0.00 3.60
2407 2813 1.153353 TCCTCAATCAACCGAAACGC 58.847 50.000 0.00 0.00 0.00 4.84
2408 2814 1.156736 CCTCAATCAACCGAAACGCT 58.843 50.000 0.00 0.00 0.00 5.07
2409 2815 2.028839 TCCTCAATCAACCGAAACGCTA 60.029 45.455 0.00 0.00 0.00 4.26
2410 2816 2.739913 CCTCAATCAACCGAAACGCTAA 59.260 45.455 0.00 0.00 0.00 3.09
2411 2817 3.187637 CCTCAATCAACCGAAACGCTAAA 59.812 43.478 0.00 0.00 0.00 1.85
2412 2818 4.319911 CCTCAATCAACCGAAACGCTAAAA 60.320 41.667 0.00 0.00 0.00 1.52
2436 2842 6.401047 AAATGATATCCTCACCATTGCTTG 57.599 37.500 0.00 0.00 36.48 4.01
2437 2843 3.216800 TGATATCCTCACCATTGCTTGC 58.783 45.455 0.00 0.00 0.00 4.01
2507 2913 1.389555 GGGCCACTAGCAAATGTACC 58.610 55.000 4.39 0.00 46.50 3.34
2522 2928 6.514870 GCAAATGTACCACAAGACTGATTTCA 60.515 38.462 0.00 0.00 0.00 2.69
2530 2936 6.042093 ACCACAAGACTGATTTCAGAACTCTA 59.958 38.462 14.29 0.00 46.59 2.43
2541 2947 8.576442 TGATTTCAGAACTCTATATACGCATGA 58.424 33.333 0.00 0.00 0.00 3.07
2578 2984 3.067106 CACCACTCAGTACATTGGACAC 58.933 50.000 1.02 0.00 33.02 3.67
2579 2985 2.703536 ACCACTCAGTACATTGGACACA 59.296 45.455 1.02 0.00 33.02 3.72
2617 3029 7.557719 ACAACTGGATTATTAAATGTGAGAGGG 59.442 37.037 0.00 0.00 0.00 4.30
2626 3038 2.223803 ATGTGAGAGGGAGAACGACT 57.776 50.000 0.00 0.00 0.00 4.18
2629 3041 3.698289 TGTGAGAGGGAGAACGACTAAT 58.302 45.455 0.00 0.00 0.00 1.73
2631 3043 3.695060 GTGAGAGGGAGAACGACTAATCA 59.305 47.826 0.00 0.00 0.00 2.57
2634 3046 3.447944 AGAGGGAGAACGACTAATCAACC 59.552 47.826 0.00 0.00 0.00 3.77
2637 3049 3.259902 GGAGAACGACTAATCAACCCAC 58.740 50.000 0.00 0.00 0.00 4.61
2638 3050 3.306502 GGAGAACGACTAATCAACCCACA 60.307 47.826 0.00 0.00 0.00 4.17
2644 3056 0.442310 CTAATCAACCCACACACGCG 59.558 55.000 3.53 3.53 0.00 6.01
2645 3057 0.249953 TAATCAACCCACACACGCGT 60.250 50.000 5.58 5.58 0.00 6.01
2646 3058 0.249953 AATCAACCCACACACGCGTA 60.250 50.000 13.44 0.00 0.00 4.42
2647 3059 0.669318 ATCAACCCACACACGCGTAG 60.669 55.000 13.44 10.78 0.00 3.51
2648 3060 2.029964 AACCCACACACGCGTAGG 59.970 61.111 13.44 11.88 0.00 3.18
2649 3061 4.675029 ACCCACACACGCGTAGGC 62.675 66.667 13.44 0.00 0.00 3.93
2650 3062 4.373116 CCCACACACGCGTAGGCT 62.373 66.667 13.44 0.00 36.88 4.58
2651 3063 3.112075 CCACACACGCGTAGGCTG 61.112 66.667 13.44 7.66 36.88 4.85
2652 3064 2.355837 CACACACGCGTAGGCTGT 60.356 61.111 13.44 8.37 36.88 4.40
2673 3085 5.984627 TGTGTTTATTCAATGTGACGACAG 58.015 37.500 0.00 0.00 34.87 3.51
2676 3088 2.183478 ATTCAATGTGACGACAGCCA 57.817 45.000 0.00 0.00 34.87 4.75
2679 3091 0.235665 CAATGTGACGACAGCCACAC 59.764 55.000 0.00 0.00 44.79 3.82
2681 3093 0.966179 ATGTGACGACAGCCACACTA 59.034 50.000 0.00 0.00 44.79 2.74
2692 3104 2.671145 CCACACTACTCTGGCTCCA 58.329 57.895 0.00 0.00 0.00 3.86
2693 3105 0.247736 CCACACTACTCTGGCTCCAC 59.752 60.000 0.00 0.00 0.00 4.02
2694 3106 0.247736 CACACTACTCTGGCTCCACC 59.752 60.000 0.00 0.00 39.84 4.61
2723 3144 9.680315 CGTAACAAAAACCCTAATTATGTGAAA 57.320 29.630 0.00 0.00 0.00 2.69
2747 3168 4.706962 ACTATGAAAAGAAATGGGAGGTGC 59.293 41.667 0.00 0.00 0.00 5.01
2757 3178 5.765182 AGAAATGGGAGGTGCGAATAATAAG 59.235 40.000 0.00 0.00 0.00 1.73
2758 3179 2.846193 TGGGAGGTGCGAATAATAAGC 58.154 47.619 0.00 0.00 0.00 3.09
2759 3180 2.171659 TGGGAGGTGCGAATAATAAGCA 59.828 45.455 0.00 0.00 38.71 3.91
2760 3181 3.181445 TGGGAGGTGCGAATAATAAGCAT 60.181 43.478 0.00 0.00 43.17 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
33 34 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
34 35 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
35 36 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
36 37 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
37 38 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
38 39 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
39 40 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
40 41 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
41 42 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
42 43 8.613060 AATATGGTGAGACATATTGTGCTAAG 57.387 34.615 9.82 0.00 46.68 2.18
53 54 8.416329 GCAATTCCTAAAAATATGGTGAGACAT 58.584 33.333 0.00 0.00 34.90 3.06
54 55 7.615365 AGCAATTCCTAAAAATATGGTGAGACA 59.385 33.333 0.00 0.00 0.00 3.41
55 56 8.000780 AGCAATTCCTAAAAATATGGTGAGAC 57.999 34.615 0.00 0.00 0.00 3.36
56 57 9.342308 CTAGCAATTCCTAAAAATATGGTGAGA 57.658 33.333 0.00 0.00 0.00 3.27
57 58 9.125026 ACTAGCAATTCCTAAAAATATGGTGAG 57.875 33.333 0.00 0.00 0.00 3.51
58 59 9.474313 AACTAGCAATTCCTAAAAATATGGTGA 57.526 29.630 0.00 0.00 0.00 4.02
71 72 9.566432 CCTTATCTTCAATAACTAGCAATTCCT 57.434 33.333 0.00 0.00 0.00 3.36
72 73 8.293157 GCCTTATCTTCAATAACTAGCAATTCC 58.707 37.037 0.00 0.00 0.00 3.01
73 74 9.061435 AGCCTTATCTTCAATAACTAGCAATTC 57.939 33.333 0.00 0.00 0.00 2.17
74 75 8.986929 AGCCTTATCTTCAATAACTAGCAATT 57.013 30.769 0.00 0.00 0.00 2.32
76 77 9.547753 CTTAGCCTTATCTTCAATAACTAGCAA 57.452 33.333 0.00 0.00 0.00 3.91
77 78 8.924303 TCTTAGCCTTATCTTCAATAACTAGCA 58.076 33.333 0.00 0.00 0.00 3.49
78 79 9.418045 CTCTTAGCCTTATCTTCAATAACTAGC 57.582 37.037 0.00 0.00 0.00 3.42
81 82 9.995003 CATCTCTTAGCCTTATCTTCAATAACT 57.005 33.333 0.00 0.00 0.00 2.24
82 83 9.988815 TCATCTCTTAGCCTTATCTTCAATAAC 57.011 33.333 0.00 0.00 0.00 1.89
83 84 9.988815 GTCATCTCTTAGCCTTATCTTCAATAA 57.011 33.333 0.00 0.00 0.00 1.40
84 85 8.589338 GGTCATCTCTTAGCCTTATCTTCAATA 58.411 37.037 0.00 0.00 0.00 1.90
85 86 7.449247 GGTCATCTCTTAGCCTTATCTTCAAT 58.551 38.462 0.00 0.00 0.00 2.57
86 87 6.183361 GGGTCATCTCTTAGCCTTATCTTCAA 60.183 42.308 0.00 0.00 0.00 2.69
87 88 5.305644 GGGTCATCTCTTAGCCTTATCTTCA 59.694 44.000 0.00 0.00 0.00 3.02
88 89 5.305644 TGGGTCATCTCTTAGCCTTATCTTC 59.694 44.000 0.00 0.00 34.30 2.87
89 90 5.219739 TGGGTCATCTCTTAGCCTTATCTT 58.780 41.667 0.00 0.00 34.30 2.40
90 91 4.820775 TGGGTCATCTCTTAGCCTTATCT 58.179 43.478 0.00 0.00 34.30 1.98
91 92 5.753721 ATGGGTCATCTCTTAGCCTTATC 57.246 43.478 0.00 0.00 34.30 1.75
92 93 7.821134 ATAATGGGTCATCTCTTAGCCTTAT 57.179 36.000 0.00 0.00 34.30 1.73
93 94 8.177456 TCTATAATGGGTCATCTCTTAGCCTTA 58.823 37.037 0.00 0.00 34.30 2.69
94 95 7.019388 TCTATAATGGGTCATCTCTTAGCCTT 58.981 38.462 0.00 0.00 34.30 4.35
95 96 6.439058 GTCTATAATGGGTCATCTCTTAGCCT 59.561 42.308 0.00 0.00 34.30 4.58
96 97 6.211584 TGTCTATAATGGGTCATCTCTTAGCC 59.788 42.308 0.00 0.00 0.00 3.93
97 98 7.233389 TGTCTATAATGGGTCATCTCTTAGC 57.767 40.000 0.00 0.00 0.00 3.09
100 101 9.927081 AAAAATGTCTATAATGGGTCATCTCTT 57.073 29.630 0.00 0.00 0.00 2.85
101 102 9.566432 GAAAAATGTCTATAATGGGTCATCTCT 57.434 33.333 0.00 0.00 0.00 3.10
102 103 9.566432 AGAAAAATGTCTATAATGGGTCATCTC 57.434 33.333 0.00 0.00 0.00 2.75
103 104 9.927081 AAGAAAAATGTCTATAATGGGTCATCT 57.073 29.630 0.00 0.00 0.00 2.90
106 107 9.308000 ACAAAGAAAAATGTCTATAATGGGTCA 57.692 29.630 0.00 0.00 0.00 4.02
107 108 9.788960 GACAAAGAAAAATGTCTATAATGGGTC 57.211 33.333 0.00 0.00 42.07 4.46
108 109 9.308000 TGACAAAGAAAAATGTCTATAATGGGT 57.692 29.630 7.35 0.00 44.86 4.51
114 115 9.958180 TGGAGATGACAAAGAAAAATGTCTATA 57.042 29.630 7.35 0.00 44.86 1.31
115 116 8.868522 TGGAGATGACAAAGAAAAATGTCTAT 57.131 30.769 7.35 0.54 44.86 1.98
116 117 8.690203 TTGGAGATGACAAAGAAAAATGTCTA 57.310 30.769 7.35 0.00 44.86 2.59
117 118 7.587037 TTGGAGATGACAAAGAAAAATGTCT 57.413 32.000 7.35 0.00 44.86 3.41
118 119 8.822652 ATTTGGAGATGACAAAGAAAAATGTC 57.177 30.769 0.00 0.00 44.84 3.06
123 124 9.695526 CATGTAATTTGGAGATGACAAAGAAAA 57.304 29.630 0.00 0.00 40.70 2.29
124 125 7.814107 GCATGTAATTTGGAGATGACAAAGAAA 59.186 33.333 0.00 0.00 40.70 2.52
125 126 7.039853 TGCATGTAATTTGGAGATGACAAAGAA 60.040 33.333 0.00 0.00 40.70 2.52
126 127 6.433716 TGCATGTAATTTGGAGATGACAAAGA 59.566 34.615 0.00 0.00 40.70 2.52
127 128 6.623486 TGCATGTAATTTGGAGATGACAAAG 58.377 36.000 0.00 0.00 40.70 2.77
128 129 6.587206 TGCATGTAATTTGGAGATGACAAA 57.413 33.333 0.00 0.00 41.50 2.83
129 130 6.587206 TTGCATGTAATTTGGAGATGACAA 57.413 33.333 0.00 0.00 0.00 3.18
130 131 6.587206 TTTGCATGTAATTTGGAGATGACA 57.413 33.333 0.00 0.00 0.00 3.58
131 132 7.887996 TTTTTGCATGTAATTTGGAGATGAC 57.112 32.000 0.00 0.00 0.00 3.06
165 166 8.840321 GCATGTACAATGGTTGATAAGATAGTT 58.160 33.333 0.00 0.00 0.00 2.24
166 167 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
167 168 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
168 169 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
169 170 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
170 171 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
171 172 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
172 173 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
173 174 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
174 175 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
175 176 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
176 177 3.181487 GCTTAGGGCATGTACAATGGTTG 60.181 47.826 0.00 0.00 41.35 3.77
177 178 3.023832 GCTTAGGGCATGTACAATGGTT 58.976 45.455 0.00 0.00 41.35 3.67
178 179 2.242196 AGCTTAGGGCATGTACAATGGT 59.758 45.455 0.00 0.00 44.79 3.55
179 180 2.936202 AGCTTAGGGCATGTACAATGG 58.064 47.619 0.00 0.00 44.79 3.16
180 181 3.815401 GGTAGCTTAGGGCATGTACAATG 59.185 47.826 0.00 0.12 44.79 2.82
181 182 3.458118 TGGTAGCTTAGGGCATGTACAAT 59.542 43.478 0.00 0.00 44.79 2.71
182 183 2.841266 TGGTAGCTTAGGGCATGTACAA 59.159 45.455 0.00 0.00 44.79 2.41
183 184 2.473070 TGGTAGCTTAGGGCATGTACA 58.527 47.619 0.00 0.00 44.79 2.90
184 185 3.203716 GTTGGTAGCTTAGGGCATGTAC 58.796 50.000 0.00 0.00 44.79 2.90
185 186 2.841266 TGTTGGTAGCTTAGGGCATGTA 59.159 45.455 0.00 0.00 44.79 2.29
186 187 1.633432 TGTTGGTAGCTTAGGGCATGT 59.367 47.619 0.00 0.00 44.79 3.21
187 188 2.418368 TGTTGGTAGCTTAGGGCATG 57.582 50.000 0.00 0.00 44.79 4.06
188 189 3.449746 TTTGTTGGTAGCTTAGGGCAT 57.550 42.857 0.00 0.00 44.79 4.40
189 190 2.961531 TTTGTTGGTAGCTTAGGGCA 57.038 45.000 0.00 0.00 44.79 5.36
190 191 3.572682 AGTTTTTGTTGGTAGCTTAGGGC 59.427 43.478 0.00 0.00 42.19 5.19
191 192 4.558697 GCAGTTTTTGTTGGTAGCTTAGGG 60.559 45.833 0.00 0.00 0.00 3.53
192 193 4.037446 TGCAGTTTTTGTTGGTAGCTTAGG 59.963 41.667 0.00 0.00 0.00 2.69
193 194 5.181690 TGCAGTTTTTGTTGGTAGCTTAG 57.818 39.130 0.00 0.00 0.00 2.18
194 195 5.782893 ATGCAGTTTTTGTTGGTAGCTTA 57.217 34.783 0.00 0.00 0.00 3.09
195 196 4.670896 ATGCAGTTTTTGTTGGTAGCTT 57.329 36.364 0.00 0.00 0.00 3.74
196 197 4.670896 AATGCAGTTTTTGTTGGTAGCT 57.329 36.364 0.00 0.00 0.00 3.32
197 198 5.500825 CAAAATGCAGTTTTTGTTGGTAGC 58.499 37.500 9.83 0.00 40.22 3.58
219 220 6.568462 GCTCTTGCAGCTAATTGTCTAAAACA 60.568 38.462 0.00 0.00 45.83 2.83
220 221 5.797434 GCTCTTGCAGCTAATTGTCTAAAAC 59.203 40.000 0.00 0.00 45.83 2.43
221 222 5.942872 GCTCTTGCAGCTAATTGTCTAAAA 58.057 37.500 0.00 0.00 45.83 1.52
222 223 5.551760 GCTCTTGCAGCTAATTGTCTAAA 57.448 39.130 0.00 0.00 45.83 1.85
235 236 2.462456 TTGTCTGTAGGCTCTTGCAG 57.538 50.000 0.00 0.00 41.91 4.41
236 237 2.494059 GTTTGTCTGTAGGCTCTTGCA 58.506 47.619 0.00 0.00 41.91 4.08
237 238 1.461127 CGTTTGTCTGTAGGCTCTTGC 59.539 52.381 0.00 0.00 38.76 4.01
238 239 2.755650 ACGTTTGTCTGTAGGCTCTTG 58.244 47.619 0.00 0.00 0.00 3.02
239 240 3.573110 AGTACGTTTGTCTGTAGGCTCTT 59.427 43.478 0.00 0.00 0.00 2.85
240 241 3.155501 AGTACGTTTGTCTGTAGGCTCT 58.844 45.455 0.00 0.00 0.00 4.09
241 242 3.572604 AGTACGTTTGTCTGTAGGCTC 57.427 47.619 0.00 0.00 0.00 4.70
242 243 5.648572 GATAAGTACGTTTGTCTGTAGGCT 58.351 41.667 0.00 0.00 0.00 4.58
243 244 4.498323 CGATAAGTACGTTTGTCTGTAGGC 59.502 45.833 0.00 0.00 0.00 3.93
244 245 5.634896 ACGATAAGTACGTTTGTCTGTAGG 58.365 41.667 0.00 0.00 41.18 3.18
245 246 7.642060 GTACGATAAGTACGTTTGTCTGTAG 57.358 40.000 0.00 0.00 45.20 2.74
258 259 4.458397 AGCTAGCTGGTGTACGATAAGTA 58.542 43.478 18.57 0.00 0.00 2.24
259 260 3.288964 AGCTAGCTGGTGTACGATAAGT 58.711 45.455 18.57 0.00 0.00 2.24
260 261 3.304794 GGAGCTAGCTGGTGTACGATAAG 60.305 52.174 24.99 0.00 0.00 1.73
261 262 2.621998 GGAGCTAGCTGGTGTACGATAA 59.378 50.000 24.99 0.00 0.00 1.75
262 263 2.158652 AGGAGCTAGCTGGTGTACGATA 60.159 50.000 24.99 0.00 0.00 2.92
263 264 1.033574 GGAGCTAGCTGGTGTACGAT 58.966 55.000 24.99 0.00 0.00 3.73
264 265 0.034380 AGGAGCTAGCTGGTGTACGA 60.034 55.000 24.99 0.00 0.00 3.43
265 266 0.101399 CAGGAGCTAGCTGGTGTACG 59.899 60.000 24.99 0.00 0.00 3.67
266 267 1.187087 ACAGGAGCTAGCTGGTGTAC 58.813 55.000 24.99 6.09 0.00 2.90
267 268 2.656002 CTACAGGAGCTAGCTGGTGTA 58.344 52.381 24.99 24.63 0.00 2.90
268 269 1.479709 CTACAGGAGCTAGCTGGTGT 58.520 55.000 24.99 24.83 0.00 4.16
279 280 4.142513 GGAAAAATTGCAGAGCTACAGGAG 60.143 45.833 0.00 0.00 0.00 3.69
280 281 3.758554 GGAAAAATTGCAGAGCTACAGGA 59.241 43.478 0.00 0.00 0.00 3.86
281 282 3.760684 AGGAAAAATTGCAGAGCTACAGG 59.239 43.478 0.00 0.00 0.00 4.00
282 283 5.048504 TGAAGGAAAAATTGCAGAGCTACAG 60.049 40.000 0.00 0.00 0.00 2.74
283 284 4.826733 TGAAGGAAAAATTGCAGAGCTACA 59.173 37.500 0.00 0.00 0.00 2.74
284 285 5.376854 TGAAGGAAAAATTGCAGAGCTAC 57.623 39.130 0.00 0.00 0.00 3.58
285 286 6.209192 TGAATGAAGGAAAAATTGCAGAGCTA 59.791 34.615 0.00 0.00 0.00 3.32
286 287 5.011329 TGAATGAAGGAAAAATTGCAGAGCT 59.989 36.000 0.00 0.00 0.00 4.09
287 288 5.119743 GTGAATGAAGGAAAAATTGCAGAGC 59.880 40.000 0.00 0.00 0.00 4.09
288 289 5.636543 GGTGAATGAAGGAAAAATTGCAGAG 59.363 40.000 0.00 0.00 0.00 3.35
289 290 5.305128 AGGTGAATGAAGGAAAAATTGCAGA 59.695 36.000 0.00 0.00 0.00 4.26
290 291 5.544650 AGGTGAATGAAGGAAAAATTGCAG 58.455 37.500 0.00 0.00 0.00 4.41
291 292 5.070180 TGAGGTGAATGAAGGAAAAATTGCA 59.930 36.000 0.00 0.00 0.00 4.08
292 293 5.406477 GTGAGGTGAATGAAGGAAAAATTGC 59.594 40.000 0.00 0.00 0.00 3.56
293 294 5.928264 GGTGAGGTGAATGAAGGAAAAATTG 59.072 40.000 0.00 0.00 0.00 2.32
294 295 5.840693 AGGTGAGGTGAATGAAGGAAAAATT 59.159 36.000 0.00 0.00 0.00 1.82
295 296 5.397360 AGGTGAGGTGAATGAAGGAAAAAT 58.603 37.500 0.00 0.00 0.00 1.82
296 297 4.803452 AGGTGAGGTGAATGAAGGAAAAA 58.197 39.130 0.00 0.00 0.00 1.94
297 298 4.453480 AGGTGAGGTGAATGAAGGAAAA 57.547 40.909 0.00 0.00 0.00 2.29
298 299 4.453480 AAGGTGAGGTGAATGAAGGAAA 57.547 40.909 0.00 0.00 0.00 3.13
299 300 4.144297 CAAAGGTGAGGTGAATGAAGGAA 58.856 43.478 0.00 0.00 0.00 3.36
300 301 3.138283 ACAAAGGTGAGGTGAATGAAGGA 59.862 43.478 0.00 0.00 0.00 3.36
301 302 3.490348 ACAAAGGTGAGGTGAATGAAGG 58.510 45.455 0.00 0.00 0.00 3.46
302 303 4.261741 CCAACAAAGGTGAGGTGAATGAAG 60.262 45.833 0.00 0.00 0.00 3.02
303 304 3.636300 CCAACAAAGGTGAGGTGAATGAA 59.364 43.478 0.00 0.00 0.00 2.57
304 305 3.117701 TCCAACAAAGGTGAGGTGAATGA 60.118 43.478 0.00 0.00 0.00 2.57
305 306 3.221771 TCCAACAAAGGTGAGGTGAATG 58.778 45.455 0.00 0.00 0.00 2.67
306 307 3.490348 CTCCAACAAAGGTGAGGTGAAT 58.510 45.455 0.00 0.00 0.00 2.57
307 308 2.422803 CCTCCAACAAAGGTGAGGTGAA 60.423 50.000 0.00 0.00 39.64 3.18
308 309 1.142870 CCTCCAACAAAGGTGAGGTGA 59.857 52.381 0.00 0.00 39.64 4.02
309 310 1.609208 CCTCCAACAAAGGTGAGGTG 58.391 55.000 0.00 0.00 39.64 4.00
310 311 0.178990 GCCTCCAACAAAGGTGAGGT 60.179 55.000 6.30 0.00 45.04 3.85
311 312 0.111253 AGCCTCCAACAAAGGTGAGG 59.889 55.000 0.00 0.00 45.83 3.86
312 313 1.882623 GAAGCCTCCAACAAAGGTGAG 59.117 52.381 0.00 0.00 36.21 3.51
313 314 1.494721 AGAAGCCTCCAACAAAGGTGA 59.505 47.619 0.00 0.00 36.21 4.02
314 315 1.610522 CAGAAGCCTCCAACAAAGGTG 59.389 52.381 0.00 0.00 36.21 4.00
315 316 1.986882 CAGAAGCCTCCAACAAAGGT 58.013 50.000 0.00 0.00 36.21 3.50
316 317 0.600057 GCAGAAGCCTCCAACAAAGG 59.400 55.000 0.00 0.00 36.95 3.11
317 318 1.613836 AGCAGAAGCCTCCAACAAAG 58.386 50.000 0.00 0.00 43.56 2.77
318 319 1.682854 CAAGCAGAAGCCTCCAACAAA 59.317 47.619 0.00 0.00 43.56 2.83
363 369 2.832201 GGAGATGCCTGGGCTTGC 60.832 66.667 13.05 2.49 42.51 4.01
372 378 1.522580 GTTCAGGCTCGGAGATGCC 60.523 63.158 9.69 3.69 46.26 4.40
375 381 0.324738 TCAGGTTCAGGCTCGGAGAT 60.325 55.000 9.69 0.00 33.89 2.75
376 382 0.541998 TTCAGGTTCAGGCTCGGAGA 60.542 55.000 9.69 0.00 0.00 3.71
377 383 0.108424 CTTCAGGTTCAGGCTCGGAG 60.108 60.000 0.00 0.00 0.00 4.63
378 384 1.544825 CCTTCAGGTTCAGGCTCGGA 61.545 60.000 0.00 0.00 0.00 4.55
380 386 4.606071 CCTTCAGGTTCAGGCTCG 57.394 61.111 0.00 0.00 0.00 5.03
410 416 2.288948 TGGATTCAGGCATGTGTTTTGC 60.289 45.455 0.00 0.00 39.41 3.68
454 465 7.384660 GGCACTTTTAAAATGATTCATGTGTGA 59.615 33.333 0.09 0.00 0.00 3.58
482 496 1.114722 TTGCTCAAAGGGTGGCAAGG 61.115 55.000 0.00 0.00 38.02 3.61
529 543 8.251383 TGGATGGTAAATAAAACAACAAAGGA 57.749 30.769 0.00 0.00 0.00 3.36
587 624 2.512515 GGTGGAGGAGTCATGCGC 60.513 66.667 0.00 0.00 0.00 6.09
588 625 0.036010 AAAGGTGGAGGAGTCATGCG 60.036 55.000 0.00 0.00 0.00 4.73
589 626 1.680249 GGAAAGGTGGAGGAGTCATGC 60.680 57.143 0.00 0.00 0.00 4.06
590 627 1.630369 TGGAAAGGTGGAGGAGTCATG 59.370 52.381 0.00 0.00 0.00 3.07
675 736 3.721969 GAGGGGTCCTCTCCTTTCT 57.278 57.895 7.65 0.00 46.41 2.52
684 745 0.629058 GAGACAGAGAGAGGGGTCCT 59.371 60.000 0.00 0.00 36.03 3.85
686 747 2.775384 TCTAGAGACAGAGAGAGGGGTC 59.225 54.545 0.00 0.00 0.00 4.46
687 748 2.853430 TCTAGAGACAGAGAGAGGGGT 58.147 52.381 0.00 0.00 0.00 4.95
697 761 6.313905 ACAAAAAGTGTGTGTTCTAGAGACAG 59.686 38.462 6.87 0.00 39.72 3.51
699 763 6.312918 TGACAAAAAGTGTGTGTTCTAGAGAC 59.687 38.462 0.00 0.00 41.96 3.36
730 827 0.039618 AATTACACTGTGGCAGGGGG 59.960 55.000 13.09 0.00 39.55 5.40
786 885 2.387757 CTCCTCCTCTCCTTCTCCTTG 58.612 57.143 0.00 0.00 0.00 3.61
861 966 4.117685 CTCTCATGAAGCACAATCGATCA 58.882 43.478 0.00 0.00 0.00 2.92
869 974 2.167281 GCTCTACCTCTCATGAAGCACA 59.833 50.000 8.14 0.00 0.00 4.57
872 977 2.287547 CGAGCTCTACCTCTCATGAAGC 60.288 54.545 12.85 5.35 0.00 3.86
873 978 2.293122 CCGAGCTCTACCTCTCATGAAG 59.707 54.545 12.85 0.00 0.00 3.02
874 979 2.302260 CCGAGCTCTACCTCTCATGAA 58.698 52.381 12.85 0.00 0.00 2.57
884 997 1.445716 TTCTAGCGGCCGAGCTCTAC 61.446 60.000 33.48 9.31 45.67 2.59
893 1006 2.890961 GGCGAACTTCTAGCGGCC 60.891 66.667 0.00 0.00 43.61 6.13
908 1021 2.580867 CTACTGCGAGCGTCAGGC 60.581 66.667 15.04 0.00 44.05 4.85
915 1065 0.800300 GACTCTGTGCTACTGCGAGC 60.800 60.000 0.00 0.00 43.34 5.03
918 1068 1.153745 GGGACTCTGTGCTACTGCG 60.154 63.158 0.00 0.00 43.34 5.18
930 1080 1.004440 GCAGAGTGGTGTGGGACTC 60.004 63.158 0.00 0.00 39.18 3.36
954 1109 1.168714 CCAAGCAACTACCAGAAGCC 58.831 55.000 0.00 0.00 0.00 4.35
1013 1175 0.395862 CACCTCCGAGAGCCTCCTAA 60.396 60.000 0.00 0.00 0.00 2.69
1014 1176 1.227664 CACCTCCGAGAGCCTCCTA 59.772 63.158 0.00 0.00 0.00 2.94
1087 1255 1.528309 CCCTGACGCCCTTGTTGTT 60.528 57.895 0.00 0.00 0.00 2.83
1090 1258 3.133365 AAGCCCTGACGCCCTTGTT 62.133 57.895 0.00 0.00 0.00 2.83
1366 1570 0.034896 TCTCCTTGGAACCGTGAAGC 59.965 55.000 0.00 0.00 0.00 3.86
1403 1607 5.104374 GTGAATTATTTGTGGGCATGACTG 58.896 41.667 0.00 0.00 0.00 3.51
1410 1614 3.192633 ACGAAGGTGAATTATTTGTGGGC 59.807 43.478 0.00 0.00 0.00 5.36
1415 1619 6.808212 AGCATGAAACGAAGGTGAATTATTTG 59.192 34.615 0.00 0.00 0.00 2.32
1430 1634 2.481568 TCAAGAAGCAGAGCATGAAACG 59.518 45.455 0.00 0.00 0.00 3.60
1449 1653 8.518720 TCCTCCCCTGTATTTATCATTTATCA 57.481 34.615 0.00 0.00 0.00 2.15
1450 1654 8.049721 CCTCCTCCCCTGTATTTATCATTTATC 58.950 40.741 0.00 0.00 0.00 1.75
1451 1655 7.744068 TCCTCCTCCCCTGTATTTATCATTTAT 59.256 37.037 0.00 0.00 0.00 1.40
1452 1656 7.086260 TCCTCCTCCCCTGTATTTATCATTTA 58.914 38.462 0.00 0.00 0.00 1.40
1453 1657 5.917087 TCCTCCTCCCCTGTATTTATCATTT 59.083 40.000 0.00 0.00 0.00 2.32
1454 1658 5.486332 TCCTCCTCCCCTGTATTTATCATT 58.514 41.667 0.00 0.00 0.00 2.57
1455 1659 5.097234 CTCCTCCTCCCCTGTATTTATCAT 58.903 45.833 0.00 0.00 0.00 2.45
1527 1743 0.705253 TCCTCCGACTCCTCCTTCTT 59.295 55.000 0.00 0.00 0.00 2.52
1528 1744 0.257616 CTCCTCCGACTCCTCCTTCT 59.742 60.000 0.00 0.00 0.00 2.85
1530 1746 1.215679 TCCTCCTCCGACTCCTCCTT 61.216 60.000 0.00 0.00 0.00 3.36
1531 1747 1.619975 TCCTCCTCCGACTCCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
1532 1748 1.152839 CTCCTCCTCCGACTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1536 1758 0.750182 CTCCACTCCTCCTCCGACTC 60.750 65.000 0.00 0.00 0.00 3.36
1565 1787 2.361357 ACCCTCTCCCACGACGAG 60.361 66.667 0.00 0.00 0.00 4.18
1617 1839 0.673022 GAGCTCAACAGGTCCAGCTG 60.673 60.000 9.40 6.78 42.40 4.24
1630 1852 3.068064 TCGCCGACATGGAGCTCA 61.068 61.111 17.19 1.87 42.00 4.26
1754 1980 1.360551 CACTCCGATCCGCTACAGG 59.639 63.158 0.00 0.00 0.00 4.00
1787 2013 1.448189 CAGCCAGCTGCAGAGTCTC 60.448 63.158 20.43 0.00 44.83 3.36
1815 2041 3.244277 GCTTAAGGCACCGAAGCATCG 62.244 57.143 18.81 3.96 44.05 3.84
1816 2042 0.378610 GCTTAAGGCACCGAAGCATC 59.621 55.000 18.81 0.00 44.05 3.91
1817 2043 1.032114 GGCTTAAGGCACCGAAGCAT 61.032 55.000 23.15 0.00 45.97 3.79
1818 2044 1.674322 GGCTTAAGGCACCGAAGCA 60.674 57.895 23.15 0.00 45.97 3.91
1819 2045 1.674322 TGGCTTAAGGCACCGAAGC 60.674 57.895 26.43 16.63 46.12 3.86
1827 2053 3.886123 TCAAAGATAGGTGGCTTAAGGC 58.114 45.455 21.52 21.52 41.50 4.35
1829 2055 7.872113 AAAGATCAAAGATAGGTGGCTTAAG 57.128 36.000 0.00 0.00 0.00 1.85
1830 2056 8.325787 TGTAAAGATCAAAGATAGGTGGCTTAA 58.674 33.333 0.00 0.00 0.00 1.85
1831 2057 7.857456 TGTAAAGATCAAAGATAGGTGGCTTA 58.143 34.615 0.00 0.00 0.00 3.09
1832 2058 6.721318 TGTAAAGATCAAAGATAGGTGGCTT 58.279 36.000 0.00 0.00 0.00 4.35
1834 2060 7.573968 AATGTAAAGATCAAAGATAGGTGGC 57.426 36.000 0.00 0.00 0.00 5.01
1866 2248 9.672673 AGCATCTAACATGTCTAAACTGTATTT 57.327 29.630 0.00 0.00 0.00 1.40
1867 2249 9.319143 GAGCATCTAACATGTCTAAACTGTATT 57.681 33.333 0.00 0.00 0.00 1.89
1869 2251 7.836842 TGAGCATCTAACATGTCTAAACTGTA 58.163 34.615 0.00 0.00 34.92 2.74
1870 2252 6.701340 TGAGCATCTAACATGTCTAAACTGT 58.299 36.000 0.00 0.00 34.92 3.55
1871 2253 7.601073 TTGAGCATCTAACATGTCTAAACTG 57.399 36.000 0.00 0.00 34.92 3.16
1891 2274 7.166970 CGGATGATATTTTGAACATTGCTTGAG 59.833 37.037 0.00 0.00 0.00 3.02
1892 2275 6.974048 CGGATGATATTTTGAACATTGCTTGA 59.026 34.615 0.00 0.00 0.00 3.02
1904 2301 7.868775 ACATCAGTGAATCGGATGATATTTTG 58.131 34.615 13.65 0.00 46.47 2.44
1909 2306 5.335661 CGGTACATCAGTGAATCGGATGATA 60.336 44.000 13.65 3.54 46.47 2.15
1914 2311 1.407618 CCGGTACATCAGTGAATCGGA 59.592 52.381 9.02 0.00 36.96 4.55
1916 2313 1.209128 GCCGGTACATCAGTGAATCG 58.791 55.000 1.90 0.00 0.00 3.34
1917 2314 1.583054 GGCCGGTACATCAGTGAATC 58.417 55.000 1.90 0.00 0.00 2.52
1918 2315 0.179084 CGGCCGGTACATCAGTGAAT 60.179 55.000 20.10 0.00 0.00 2.57
1920 2317 1.040893 ATCGGCCGGTACATCAGTGA 61.041 55.000 27.83 0.12 0.00 3.41
1921 2318 0.179084 AATCGGCCGGTACATCAGTG 60.179 55.000 27.83 0.00 0.00 3.66
1922 2319 0.104304 GAATCGGCCGGTACATCAGT 59.896 55.000 27.83 1.99 0.00 3.41
1924 2321 0.756294 ATGAATCGGCCGGTACATCA 59.244 50.000 27.83 19.96 0.00 3.07
1925 2322 1.270094 TGATGAATCGGCCGGTACATC 60.270 52.381 31.61 31.61 35.96 3.06
1926 2323 0.756294 TGATGAATCGGCCGGTACAT 59.244 50.000 27.83 25.12 0.00 2.29
1928 2325 0.104304 AGTGATGAATCGGCCGGTAC 59.896 55.000 27.83 13.33 0.00 3.34
1930 2327 0.828022 TAAGTGATGAATCGGCCGGT 59.172 50.000 27.83 18.03 0.00 5.28
1931 2328 2.169832 ATAAGTGATGAATCGGCCGG 57.830 50.000 27.83 6.80 0.00 6.13
1932 2329 4.174411 TCTATAAGTGATGAATCGGCCG 57.826 45.455 22.12 22.12 0.00 6.13
1933 2330 4.872691 CCATCTATAAGTGATGAATCGGCC 59.127 45.833 0.00 0.00 42.68 6.13
1935 2332 5.871524 CACCCATCTATAAGTGATGAATCGG 59.128 44.000 5.42 1.49 42.68 4.18
1936 2333 5.871524 CCACCCATCTATAAGTGATGAATCG 59.128 44.000 5.42 0.00 42.68 3.34
1937 2334 6.176183 CCCACCCATCTATAAGTGATGAATC 58.824 44.000 5.42 0.00 42.68 2.52
1938 2335 5.612688 ACCCACCCATCTATAAGTGATGAAT 59.387 40.000 5.42 0.00 42.68 2.57
1939 2336 4.975147 ACCCACCCATCTATAAGTGATGAA 59.025 41.667 5.42 0.00 42.68 2.57
1940 2337 4.347876 CACCCACCCATCTATAAGTGATGA 59.652 45.833 5.42 0.00 42.68 2.92
1941 2338 4.505566 CCACCCACCCATCTATAAGTGATG 60.506 50.000 0.00 0.00 40.51 3.07
1942 2339 3.652869 CCACCCACCCATCTATAAGTGAT 59.347 47.826 0.00 0.00 31.79 3.06
1943 2340 3.045634 CCACCCACCCATCTATAAGTGA 58.954 50.000 0.00 0.00 31.79 3.41
1944 2341 2.487265 GCCACCCACCCATCTATAAGTG 60.487 54.545 0.00 0.00 0.00 3.16
1945 2342 1.774856 GCCACCCACCCATCTATAAGT 59.225 52.381 0.00 0.00 0.00 2.24
1946 2343 1.073923 GGCCACCCACCCATCTATAAG 59.926 57.143 0.00 0.00 0.00 1.73
1947 2344 1.145571 GGCCACCCACCCATCTATAA 58.854 55.000 0.00 0.00 0.00 0.98
1948 2345 0.029577 TGGCCACCCACCCATCTATA 60.030 55.000 0.00 0.00 35.79 1.31
1949 2346 0.702356 ATGGCCACCCACCCATCTAT 60.702 55.000 8.16 0.00 45.77 1.98
1950 2347 0.923729 AATGGCCACCCACCCATCTA 60.924 55.000 8.16 0.00 45.77 1.98
1951 2348 0.923729 TAATGGCCACCCACCCATCT 60.924 55.000 8.16 0.00 45.77 2.90
1952 2349 0.032615 TTAATGGCCACCCACCCATC 60.033 55.000 8.16 0.00 45.77 3.51
1953 2350 0.032217 CTTAATGGCCACCCACCCAT 60.032 55.000 8.16 0.00 45.77 4.00
1954 2351 1.143329 TCTTAATGGCCACCCACCCA 61.143 55.000 8.16 0.00 45.77 4.51
1955 2352 0.261696 ATCTTAATGGCCACCCACCC 59.738 55.000 8.16 0.00 45.77 4.61
1956 2353 2.159179 AATCTTAATGGCCACCCACC 57.841 50.000 8.16 0.00 45.77 4.61
1957 2354 6.485171 AGATATAATCTTAATGGCCACCCAC 58.515 40.000 8.16 0.00 39.44 4.61
1958 2355 6.718593 AGATATAATCTTAATGGCCACCCA 57.281 37.500 8.16 0.00 40.46 4.51
2043 2440 5.074804 TGGGTCTAGCACTATTAATCGCTA 58.925 41.667 11.53 11.53 35.93 4.26
2044 2441 3.895656 TGGGTCTAGCACTATTAATCGCT 59.104 43.478 10.67 10.67 38.51 4.93
2045 2442 4.022242 TCTGGGTCTAGCACTATTAATCGC 60.022 45.833 0.00 0.00 0.00 4.58
2046 2443 5.707242 TCTGGGTCTAGCACTATTAATCG 57.293 43.478 0.00 0.00 0.00 3.34
2047 2444 6.402222 CCATCTGGGTCTAGCACTATTAATC 58.598 44.000 0.00 0.00 0.00 1.75
2048 2445 6.365970 CCATCTGGGTCTAGCACTATTAAT 57.634 41.667 0.00 0.00 0.00 1.40
2049 2446 5.808366 CCATCTGGGTCTAGCACTATTAA 57.192 43.478 0.00 0.00 0.00 1.40
2067 2464 4.126437 CCTTGTTTTGGGTTTTGACCATC 58.874 43.478 0.00 0.00 37.93 3.51
2068 2465 3.684130 GCCTTGTTTTGGGTTTTGACCAT 60.684 43.478 0.00 0.00 37.93 3.55
2103 2502 2.676839 GGAGATGAAGTGTGATGTGCAG 59.323 50.000 0.00 0.00 0.00 4.41
2104 2503 2.303890 AGGAGATGAAGTGTGATGTGCA 59.696 45.455 0.00 0.00 0.00 4.57
2108 2513 5.836347 TCGAATAGGAGATGAAGTGTGATG 58.164 41.667 0.00 0.00 0.00 3.07
2122 2527 4.955811 ACACATGCCTTATCGAATAGGA 57.044 40.909 17.67 5.83 0.00 2.94
2130 2535 7.254795 GGACAATACTACAACACATGCCTTATC 60.255 40.741 0.00 0.00 0.00 1.75
2134 2539 4.019321 AGGACAATACTACAACACATGCCT 60.019 41.667 0.00 0.00 0.00 4.75
2138 2543 5.165961 AGCAGGACAATACTACAACACAT 57.834 39.130 0.00 0.00 0.00 3.21
2158 2563 6.142817 ACAACGAGTCAATGATAAACAAAGC 58.857 36.000 0.00 0.00 0.00 3.51
2159 2564 8.471457 CAAACAACGAGTCAATGATAAACAAAG 58.529 33.333 0.00 0.00 0.00 2.77
2163 2569 9.988350 ATATCAAACAACGAGTCAATGATAAAC 57.012 29.630 0.00 0.00 35.59 2.01
2167 2573 7.615582 ACATATCAAACAACGAGTCAATGAT 57.384 32.000 0.00 2.25 34.42 2.45
2199 2605 5.794894 CAAGTATTGTGGTACAGAGGAAGT 58.205 41.667 0.00 0.00 42.34 3.01
2215 2621 4.426704 ACTCCCTCTGTACCACAAGTATT 58.573 43.478 0.00 0.00 32.28 1.89
2216 2622 4.062490 ACTCCCTCTGTACCACAAGTAT 57.938 45.455 0.00 0.00 32.28 2.12
2217 2623 3.537795 ACTCCCTCTGTACCACAAGTA 57.462 47.619 0.00 0.00 0.00 2.24
2218 2624 2.400467 ACTCCCTCTGTACCACAAGT 57.600 50.000 0.00 0.00 0.00 3.16
2219 2625 3.432378 ACTACTCCCTCTGTACCACAAG 58.568 50.000 0.00 0.00 0.00 3.16
2220 2626 3.537795 ACTACTCCCTCTGTACCACAA 57.462 47.619 0.00 0.00 0.00 3.33
2221 2627 3.537795 AACTACTCCCTCTGTACCACA 57.462 47.619 0.00 0.00 0.00 4.17
2222 2628 4.954826 ACATAACTACTCCCTCTGTACCAC 59.045 45.833 0.00 0.00 0.00 4.16
2223 2629 5.202746 ACATAACTACTCCCTCTGTACCA 57.797 43.478 0.00 0.00 0.00 3.25
2224 2630 7.504911 TCAATACATAACTACTCCCTCTGTACC 59.495 40.741 0.00 0.00 0.00 3.34
2225 2631 8.351461 GTCAATACATAACTACTCCCTCTGTAC 58.649 40.741 0.00 0.00 0.00 2.90
2226 2632 8.057011 TGTCAATACATAACTACTCCCTCTGTA 58.943 37.037 0.00 0.00 0.00 2.74
2227 2633 6.895756 TGTCAATACATAACTACTCCCTCTGT 59.104 38.462 0.00 0.00 0.00 3.41
2228 2634 7.348080 TGTCAATACATAACTACTCCCTCTG 57.652 40.000 0.00 0.00 0.00 3.35
2229 2635 7.015682 CCATGTCAATACATAACTACTCCCTCT 59.984 40.741 0.00 0.00 44.70 3.69
2230 2636 7.155328 CCATGTCAATACATAACTACTCCCTC 58.845 42.308 0.00 0.00 44.70 4.30
2231 2637 6.615726 ACCATGTCAATACATAACTACTCCCT 59.384 38.462 0.00 0.00 44.70 4.20
2232 2638 6.706270 CACCATGTCAATACATAACTACTCCC 59.294 42.308 0.00 0.00 44.70 4.30
2233 2639 7.272978 ACACCATGTCAATACATAACTACTCC 58.727 38.462 0.00 0.00 44.70 3.85
2234 2640 8.604035 CAACACCATGTCAATACATAACTACTC 58.396 37.037 0.00 0.00 44.70 2.59
2235 2641 7.065803 GCAACACCATGTCAATACATAACTACT 59.934 37.037 0.00 0.00 44.70 2.57
2236 2642 7.148323 TGCAACACCATGTCAATACATAACTAC 60.148 37.037 0.00 0.00 44.70 2.73
2251 2657 4.864247 GCCTTTAAATAGTGCAACACCATG 59.136 41.667 0.00 0.00 41.43 3.66
2254 2660 4.783764 AGCCTTTAAATAGTGCAACACC 57.216 40.909 0.00 0.00 41.43 4.16
2268 2674 9.039870 CAAACATTATTGTGTTCAAAGCCTTTA 57.960 29.630 0.00 0.00 41.22 1.85
2271 2677 5.466393 GCAAACATTATTGTGTTCAAAGCCT 59.534 36.000 0.00 0.00 41.22 4.58
2272 2678 5.466393 AGCAAACATTATTGTGTTCAAAGCC 59.534 36.000 0.00 0.00 41.22 4.35
2273 2679 6.529463 AGCAAACATTATTGTGTTCAAAGC 57.471 33.333 0.00 0.00 41.22 3.51
2274 2680 8.356533 AGAAGCAAACATTATTGTGTTCAAAG 57.643 30.769 0.00 0.00 41.22 2.77
2276 2682 9.979578 AATAGAAGCAAACATTATTGTGTTCAA 57.020 25.926 0.00 0.00 41.22 2.69
2277 2683 9.979578 AAATAGAAGCAAACATTATTGTGTTCA 57.020 25.926 0.00 0.00 41.22 3.18
2291 2697 7.382218 GCACTGAAAGCTAAAAATAGAAGCAAA 59.618 33.333 0.00 0.00 38.75 3.68
2293 2699 6.207417 AGCACTGAAAGCTAAAAATAGAAGCA 59.793 34.615 0.00 0.00 41.32 3.91
2299 2705 6.892658 TCCAAGCACTGAAAGCTAAAAATA 57.107 33.333 0.00 0.00 42.53 1.40
2360 2766 8.970859 AGAGATTAATCGGAAATCAGTCAATT 57.029 30.769 9.78 0.00 36.09 2.32
2364 2770 9.145865 GGATAAGAGATTAATCGGAAATCAGTC 57.854 37.037 9.78 0.00 36.09 3.51
2367 2773 8.870116 TGAGGATAAGAGATTAATCGGAAATCA 58.130 33.333 9.78 5.86 36.09 2.57
2374 2780 8.930760 GGTTGATTGAGGATAAGAGATTAATCG 58.069 37.037 9.78 0.00 0.00 3.34
2376 2782 8.651389 TCGGTTGATTGAGGATAAGAGATTAAT 58.349 33.333 0.00 0.00 0.00 1.40
2389 2795 1.156736 AGCGTTTCGGTTGATTGAGG 58.843 50.000 0.00 0.00 32.22 3.86
2390 2796 4.398549 TTTAGCGTTTCGGTTGATTGAG 57.601 40.909 0.00 0.00 38.83 3.02
2391 2797 4.815040 TTTTAGCGTTTCGGTTGATTGA 57.185 36.364 0.00 0.00 38.83 2.57
2411 2817 7.270047 CAAGCAATGGTGAGGATATCATTTTT 58.730 34.615 4.83 0.00 40.92 1.94
2412 2818 6.684613 GCAAGCAATGGTGAGGATATCATTTT 60.685 38.462 4.83 0.00 40.92 1.82
2416 2822 3.216800 GCAAGCAATGGTGAGGATATCA 58.783 45.455 4.83 0.00 34.79 2.15
2427 2833 4.082625 TCAGTTCATACTTGCAAGCAATGG 60.083 41.667 28.55 18.63 35.20 3.16
2436 2842 8.863049 CATTAACCAATTTCAGTTCATACTTGC 58.137 33.333 0.00 0.00 30.26 4.01
2437 2843 9.912634 ACATTAACCAATTTCAGTTCATACTTG 57.087 29.630 0.00 0.00 30.26 3.16
2487 2893 1.389555 GTACATTTGCTAGTGGCCCC 58.610 55.000 0.00 0.00 40.92 5.80
2507 2913 9.814899 ATATAGAGTTCTGAAATCAGTCTTGTG 57.185 33.333 18.64 0.00 44.12 3.33
2541 2947 5.711506 TGAGTGGTGCTTGATGATATTTTGT 59.288 36.000 0.00 0.00 0.00 2.83
2554 2960 2.371841 TCCAATGTACTGAGTGGTGCTT 59.628 45.455 0.00 0.00 32.68 3.91
2556 2962 2.076863 GTCCAATGTACTGAGTGGTGC 58.923 52.381 0.00 0.00 32.68 5.01
2603 3009 4.527038 AGTCGTTCTCCCTCTCACATTTAA 59.473 41.667 0.00 0.00 0.00 1.52
2604 3010 4.087182 AGTCGTTCTCCCTCTCACATTTA 58.913 43.478 0.00 0.00 0.00 1.40
2606 3012 2.530701 AGTCGTTCTCCCTCTCACATT 58.469 47.619 0.00 0.00 0.00 2.71
2609 3015 3.695060 TGATTAGTCGTTCTCCCTCTCAC 59.305 47.826 0.00 0.00 0.00 3.51
2610 3016 3.964411 TGATTAGTCGTTCTCCCTCTCA 58.036 45.455 0.00 0.00 0.00 3.27
2617 3029 3.678548 GTGTGGGTTGATTAGTCGTTCTC 59.321 47.826 0.00 0.00 0.00 2.87
2626 3038 0.249953 ACGCGTGTGTGGGTTGATTA 60.250 50.000 12.93 0.00 0.00 1.75
2629 3041 1.300311 CTACGCGTGTGTGGGTTGA 60.300 57.895 24.59 0.00 36.35 3.18
2631 3043 2.029964 CCTACGCGTGTGTGGGTT 59.970 61.111 24.59 0.00 35.88 4.11
2634 3046 3.112075 CAGCCTACGCGTGTGTGG 61.112 66.667 24.59 18.61 41.18 4.17
2637 3049 1.495584 AAACACAGCCTACGCGTGTG 61.496 55.000 24.59 22.44 45.45 3.82
2638 3050 0.032403 TAAACACAGCCTACGCGTGT 59.968 50.000 24.59 7.91 46.95 4.49
2644 3056 6.314784 GTCACATTGAATAAACACAGCCTAC 58.685 40.000 0.00 0.00 0.00 3.18
2645 3057 5.121611 CGTCACATTGAATAAACACAGCCTA 59.878 40.000 0.00 0.00 0.00 3.93
2646 3058 4.083324 CGTCACATTGAATAAACACAGCCT 60.083 41.667 0.00 0.00 0.00 4.58
2647 3059 4.083537 TCGTCACATTGAATAAACACAGCC 60.084 41.667 0.00 0.00 0.00 4.85
2648 3060 4.846137 GTCGTCACATTGAATAAACACAGC 59.154 41.667 0.00 0.00 0.00 4.40
2649 3061 5.984627 TGTCGTCACATTGAATAAACACAG 58.015 37.500 0.00 0.00 0.00 3.66
2650 3062 5.559991 GCTGTCGTCACATTGAATAAACACA 60.560 40.000 0.00 0.00 0.00 3.72
2651 3063 4.846137 GCTGTCGTCACATTGAATAAACAC 59.154 41.667 0.00 0.00 0.00 3.32
2652 3064 4.083537 GGCTGTCGTCACATTGAATAAACA 60.084 41.667 0.00 0.00 0.00 2.83
2676 3088 0.178932 TGGTGGAGCCAGAGTAGTGT 60.179 55.000 0.00 0.00 43.61 3.55
2689 3101 2.426381 GGGTTTTTGTTACGTTGGTGGA 59.574 45.455 0.00 0.00 0.00 4.02
2690 3102 2.427812 AGGGTTTTTGTTACGTTGGTGG 59.572 45.455 0.00 0.00 0.00 4.61
2691 3103 3.786516 AGGGTTTTTGTTACGTTGGTG 57.213 42.857 0.00 0.00 0.00 4.17
2692 3104 6.468333 AATTAGGGTTTTTGTTACGTTGGT 57.532 33.333 0.00 0.00 0.00 3.67
2693 3105 8.083462 ACATAATTAGGGTTTTTGTTACGTTGG 58.917 33.333 0.00 0.00 0.00 3.77
2694 3106 8.907685 CACATAATTAGGGTTTTTGTTACGTTG 58.092 33.333 0.00 0.00 0.00 4.10
2723 3144 5.185828 GCACCTCCCATTTCTTTTCATAGTT 59.814 40.000 0.00 0.00 0.00 2.24
2725 3146 4.201950 CGCACCTCCCATTTCTTTTCATAG 60.202 45.833 0.00 0.00 0.00 2.23
2728 3149 1.885887 CGCACCTCCCATTTCTTTTCA 59.114 47.619 0.00 0.00 0.00 2.69
2736 3157 3.821033 GCTTATTATTCGCACCTCCCATT 59.179 43.478 0.00 0.00 0.00 3.16
2738 3159 2.171659 TGCTTATTATTCGCACCTCCCA 59.828 45.455 0.00 0.00 0.00 4.37
2739 3160 2.846193 TGCTTATTATTCGCACCTCCC 58.154 47.619 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.