Multiple sequence alignment - TraesCS5A01G011300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G011300 chr5A 100.000 2663 0 0 1 2663 7486164 7488826 0.000000e+00 4918
1 TraesCS5A01G011300 chr5A 96.541 318 10 1 1 317 660187325 660187008 2.350000e-145 525
2 TraesCS5A01G011300 chr5D 89.582 2390 142 52 313 2661 9290168 9292491 0.000000e+00 2935
3 TraesCS5A01G011300 chr5B 86.498 1622 109 51 1132 2661 9298809 9300412 0.000000e+00 1681
4 TraesCS5A01G011300 chr5B 82.696 601 37 24 653 1219 9298404 9298971 3.100000e-129 472
5 TraesCS5A01G011300 chr5B 86.301 292 16 12 372 654 9297808 9298084 2.000000e-76 296
6 TraesCS5A01G011300 chr3A 97.170 318 9 0 1 318 10257212 10257529 3.020000e-149 538
7 TraesCS5A01G011300 chr2D 96.262 321 12 0 1 321 81292574 81292254 6.530000e-146 527
8 TraesCS5A01G011300 chr6D 96.825 315 9 1 1 315 17757319 17757006 2.350000e-145 525
9 TraesCS5A01G011300 chr6D 95.886 316 13 0 1 316 7232940 7233255 1.830000e-141 512
10 TraesCS5A01G011300 chr7D 95.652 322 12 2 1 322 393618657 393618338 1.410000e-142 516
11 TraesCS5A01G011300 chr7D 93.354 316 20 1 1 316 614261152 614260838 1.440000e-127 466
12 TraesCS5A01G011300 chr2B 95.597 318 13 1 1 317 110488814 110488497 2.370000e-140 508
13 TraesCS5A01G011300 chr4A 95.253 316 15 0 1 316 376659645 376659960 3.960000e-138 501


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G011300 chr5A 7486164 7488826 2662 False 4918.000000 4918 100.000 1 2663 1 chr5A.!!$F1 2662
1 TraesCS5A01G011300 chr5D 9290168 9292491 2323 False 2935.000000 2935 89.582 313 2661 1 chr5D.!!$F1 2348
2 TraesCS5A01G011300 chr5B 9297808 9300412 2604 False 816.333333 1681 85.165 372 2661 3 chr5B.!!$F1 2289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.039618 GGCCAAGAAAGATGGTGGGA 59.96 55.0 0.0 0.0 40.23 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 2106 0.839477 GTTCGTCGTTCGTTCGTTCA 59.161 50.0 0.0 0.0 40.8 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.787473 ACCAGATTGAAGCGGAATCA 57.213 45.000 7.76 0.00 33.03 2.57
22 23 2.636830 ACCAGATTGAAGCGGAATCAG 58.363 47.619 7.76 1.26 33.03 2.90
23 24 2.237143 ACCAGATTGAAGCGGAATCAGA 59.763 45.455 7.76 0.00 33.03 3.27
24 25 3.118112 ACCAGATTGAAGCGGAATCAGAT 60.118 43.478 7.76 0.00 33.03 2.90
25 26 3.881688 CCAGATTGAAGCGGAATCAGATT 59.118 43.478 0.00 0.00 33.03 2.40
26 27 4.024218 CCAGATTGAAGCGGAATCAGATTC 60.024 45.833 14.09 14.09 38.55 2.52
27 28 4.815308 CAGATTGAAGCGGAATCAGATTCT 59.185 41.667 20.41 3.01 39.24 2.40
28 29 5.050227 CAGATTGAAGCGGAATCAGATTCTC 60.050 44.000 20.41 11.80 39.24 2.87
29 30 4.478206 TTGAAGCGGAATCAGATTCTCT 57.522 40.909 20.41 15.05 39.24 3.10
30 31 4.052159 TGAAGCGGAATCAGATTCTCTC 57.948 45.455 20.41 12.74 39.24 3.20
31 32 3.181471 TGAAGCGGAATCAGATTCTCTCC 60.181 47.826 20.41 6.01 39.24 3.71
32 33 2.392662 AGCGGAATCAGATTCTCTCCA 58.607 47.619 20.41 0.00 39.24 3.86
33 34 2.364970 AGCGGAATCAGATTCTCTCCAG 59.635 50.000 20.41 8.35 39.24 3.86
34 35 2.547642 GCGGAATCAGATTCTCTCCAGG 60.548 54.545 20.41 5.35 39.24 4.45
35 36 2.697751 CGGAATCAGATTCTCTCCAGGT 59.302 50.000 20.41 0.00 39.24 4.00
36 37 3.891977 CGGAATCAGATTCTCTCCAGGTA 59.108 47.826 20.41 0.00 39.24 3.08
37 38 4.342378 CGGAATCAGATTCTCTCCAGGTAA 59.658 45.833 20.41 0.00 39.24 2.85
38 39 5.011533 CGGAATCAGATTCTCTCCAGGTAAT 59.988 44.000 20.41 0.00 39.24 1.89
39 40 6.463614 CGGAATCAGATTCTCTCCAGGTAATT 60.464 42.308 20.41 0.00 39.24 1.40
40 41 7.255977 CGGAATCAGATTCTCTCCAGGTAATTA 60.256 40.741 20.41 0.00 39.24 1.40
41 42 8.432805 GGAATCAGATTCTCTCCAGGTAATTAA 58.567 37.037 20.41 0.00 39.24 1.40
42 43 9.267084 GAATCAGATTCTCTCCAGGTAATTAAC 57.733 37.037 15.03 0.00 36.37 2.01
43 44 7.979786 TCAGATTCTCTCCAGGTAATTAACT 57.020 36.000 0.00 0.00 0.00 2.24
44 45 8.380742 TCAGATTCTCTCCAGGTAATTAACTT 57.619 34.615 0.00 0.00 0.00 2.66
45 46 8.478877 TCAGATTCTCTCCAGGTAATTAACTTC 58.521 37.037 0.00 0.00 0.00 3.01
46 47 8.482128 CAGATTCTCTCCAGGTAATTAACTTCT 58.518 37.037 0.00 0.00 0.00 2.85
47 48 8.482128 AGATTCTCTCCAGGTAATTAACTTCTG 58.518 37.037 0.00 0.54 0.00 3.02
48 49 5.978814 TCTCTCCAGGTAATTAACTTCTGC 58.021 41.667 0.00 0.00 0.00 4.26
49 50 5.483937 TCTCTCCAGGTAATTAACTTCTGCA 59.516 40.000 0.00 0.00 0.00 4.41
50 51 6.013725 TCTCTCCAGGTAATTAACTTCTGCAA 60.014 38.462 0.00 0.00 0.00 4.08
51 52 6.721318 TCTCCAGGTAATTAACTTCTGCAAT 58.279 36.000 0.00 0.00 0.00 3.56
52 53 6.599244 TCTCCAGGTAATTAACTTCTGCAATG 59.401 38.462 0.00 0.00 0.00 2.82
53 54 5.652014 TCCAGGTAATTAACTTCTGCAATGG 59.348 40.000 0.00 0.00 0.00 3.16
54 55 5.343249 CAGGTAATTAACTTCTGCAATGGC 58.657 41.667 0.00 0.00 41.68 4.40
55 56 4.402474 AGGTAATTAACTTCTGCAATGGCC 59.598 41.667 0.00 0.00 40.13 5.36
56 57 4.159506 GGTAATTAACTTCTGCAATGGCCA 59.840 41.667 8.56 8.56 40.13 5.36
57 58 4.888326 AATTAACTTCTGCAATGGCCAA 57.112 36.364 10.96 0.00 40.13 4.52
58 59 3.940209 TTAACTTCTGCAATGGCCAAG 57.060 42.857 10.96 6.90 40.13 3.61
59 60 1.999648 AACTTCTGCAATGGCCAAGA 58.000 45.000 10.96 4.81 40.13 3.02
60 61 1.999648 ACTTCTGCAATGGCCAAGAA 58.000 45.000 10.96 13.74 40.13 2.52
61 62 2.318908 ACTTCTGCAATGGCCAAGAAA 58.681 42.857 10.96 0.00 40.13 2.52
62 63 2.298163 ACTTCTGCAATGGCCAAGAAAG 59.702 45.455 10.96 10.55 40.13 2.62
63 64 2.291209 TCTGCAATGGCCAAGAAAGA 57.709 45.000 10.96 8.60 40.13 2.52
64 65 2.811410 TCTGCAATGGCCAAGAAAGAT 58.189 42.857 10.96 0.00 40.13 2.40
65 66 2.494471 TCTGCAATGGCCAAGAAAGATG 59.506 45.455 10.96 1.59 40.13 2.90
66 67 1.551430 TGCAATGGCCAAGAAAGATGG 59.449 47.619 10.96 0.00 40.13 3.51
67 68 1.551883 GCAATGGCCAAGAAAGATGGT 59.448 47.619 10.96 0.00 40.23 3.55
68 69 2.675889 GCAATGGCCAAGAAAGATGGTG 60.676 50.000 10.96 0.00 40.23 4.17
69 70 1.856629 ATGGCCAAGAAAGATGGTGG 58.143 50.000 10.96 0.00 40.23 4.61
70 71 0.251742 TGGCCAAGAAAGATGGTGGG 60.252 55.000 0.61 0.00 40.23 4.61
71 72 0.039618 GGCCAAGAAAGATGGTGGGA 59.960 55.000 0.00 0.00 40.23 4.37
72 73 1.342374 GGCCAAGAAAGATGGTGGGAT 60.342 52.381 0.00 0.00 40.23 3.85
73 74 1.753073 GCCAAGAAAGATGGTGGGATG 59.247 52.381 0.00 0.00 40.23 3.51
74 75 2.621407 GCCAAGAAAGATGGTGGGATGA 60.621 50.000 0.00 0.00 40.23 2.92
75 76 3.700538 CCAAGAAAGATGGTGGGATGAA 58.299 45.455 0.00 0.00 33.08 2.57
76 77 3.698040 CCAAGAAAGATGGTGGGATGAAG 59.302 47.826 0.00 0.00 33.08 3.02
77 78 3.010200 AGAAAGATGGTGGGATGAAGC 57.990 47.619 0.00 0.00 0.00 3.86
78 79 2.579860 AGAAAGATGGTGGGATGAAGCT 59.420 45.455 0.00 0.00 0.00 3.74
79 80 2.431954 AAGATGGTGGGATGAAGCTG 57.568 50.000 0.00 0.00 0.00 4.24
80 81 0.106819 AGATGGTGGGATGAAGCTGC 60.107 55.000 0.00 0.00 0.00 5.25
81 82 1.442526 GATGGTGGGATGAAGCTGCG 61.443 60.000 0.00 0.00 0.00 5.18
82 83 2.825836 GGTGGGATGAAGCTGCGG 60.826 66.667 0.00 0.00 0.00 5.69
83 84 3.512516 GTGGGATGAAGCTGCGGC 61.513 66.667 10.33 10.33 39.06 6.53
93 94 4.748679 GCTGCGGCTCTGTTTGCG 62.749 66.667 11.21 0.00 35.22 4.85
94 95 4.093952 CTGCGGCTCTGTTTGCGG 62.094 66.667 0.00 0.00 0.00 5.69
95 96 4.617520 TGCGGCTCTGTTTGCGGA 62.618 61.111 0.00 0.00 33.45 5.54
96 97 3.353836 GCGGCTCTGTTTGCGGAA 61.354 61.111 0.00 0.00 33.45 4.30
97 98 2.690778 GCGGCTCTGTTTGCGGAAT 61.691 57.895 0.00 0.00 33.45 3.01
98 99 1.135315 CGGCTCTGTTTGCGGAATG 59.865 57.895 0.00 0.00 33.45 2.67
99 100 1.298157 CGGCTCTGTTTGCGGAATGA 61.298 55.000 0.00 0.00 33.45 2.57
100 101 0.449388 GGCTCTGTTTGCGGAATGAG 59.551 55.000 9.35 9.35 0.00 2.90
101 102 1.160137 GCTCTGTTTGCGGAATGAGT 58.840 50.000 13.24 0.00 0.00 3.41
102 103 1.537202 GCTCTGTTTGCGGAATGAGTT 59.463 47.619 13.24 0.00 0.00 3.01
103 104 2.666619 GCTCTGTTTGCGGAATGAGTTG 60.667 50.000 13.24 3.42 0.00 3.16
104 105 2.807967 CTCTGTTTGCGGAATGAGTTGA 59.192 45.455 0.00 0.00 0.00 3.18
105 106 3.411446 TCTGTTTGCGGAATGAGTTGAT 58.589 40.909 0.00 0.00 0.00 2.57
106 107 4.574892 TCTGTTTGCGGAATGAGTTGATA 58.425 39.130 0.00 0.00 0.00 2.15
107 108 5.185454 TCTGTTTGCGGAATGAGTTGATAT 58.815 37.500 0.00 0.00 0.00 1.63
108 109 5.647658 TCTGTTTGCGGAATGAGTTGATATT 59.352 36.000 0.00 0.00 0.00 1.28
109 110 6.821160 TCTGTTTGCGGAATGAGTTGATATTA 59.179 34.615 0.00 0.00 0.00 0.98
110 111 7.011389 TCTGTTTGCGGAATGAGTTGATATTAG 59.989 37.037 0.00 0.00 0.00 1.73
111 112 6.597672 TGTTTGCGGAATGAGTTGATATTAGT 59.402 34.615 0.00 0.00 0.00 2.24
112 113 7.766738 TGTTTGCGGAATGAGTTGATATTAGTA 59.233 33.333 0.00 0.00 0.00 1.82
113 114 7.709269 TTGCGGAATGAGTTGATATTAGTAC 57.291 36.000 0.00 0.00 0.00 2.73
114 115 5.918576 TGCGGAATGAGTTGATATTAGTACG 59.081 40.000 0.00 0.00 0.00 3.67
115 116 5.919141 GCGGAATGAGTTGATATTAGTACGT 59.081 40.000 0.00 0.00 0.00 3.57
116 117 6.087820 GCGGAATGAGTTGATATTAGTACGTC 59.912 42.308 0.00 0.00 0.00 4.34
117 118 6.302549 CGGAATGAGTTGATATTAGTACGTCG 59.697 42.308 0.00 0.00 0.00 5.12
118 119 7.358066 GGAATGAGTTGATATTAGTACGTCGA 58.642 38.462 0.00 0.00 0.00 4.20
119 120 8.021973 GGAATGAGTTGATATTAGTACGTCGAT 58.978 37.037 0.00 0.00 0.00 3.59
120 121 9.395707 GAATGAGTTGATATTAGTACGTCGATT 57.604 33.333 0.00 0.00 0.00 3.34
121 122 8.729529 ATGAGTTGATATTAGTACGTCGATTG 57.270 34.615 0.00 0.00 0.00 2.67
122 123 7.922837 TGAGTTGATATTAGTACGTCGATTGA 58.077 34.615 0.00 0.00 0.00 2.57
123 124 8.400186 TGAGTTGATATTAGTACGTCGATTGAA 58.600 33.333 0.00 0.00 0.00 2.69
124 125 9.229784 GAGTTGATATTAGTACGTCGATTGAAA 57.770 33.333 0.00 0.00 0.00 2.69
125 126 9.577110 AGTTGATATTAGTACGTCGATTGAAAA 57.423 29.630 0.00 0.00 0.00 2.29
126 127 9.831054 GTTGATATTAGTACGTCGATTGAAAAG 57.169 33.333 0.00 0.00 0.00 2.27
127 128 8.570096 TGATATTAGTACGTCGATTGAAAAGG 57.430 34.615 0.00 0.00 0.00 3.11
128 129 8.192774 TGATATTAGTACGTCGATTGAAAAGGT 58.807 33.333 0.00 0.00 0.00 3.50
129 130 6.882458 ATTAGTACGTCGATTGAAAAGGTC 57.118 37.500 0.00 0.00 0.00 3.85
130 131 4.247267 AGTACGTCGATTGAAAAGGTCA 57.753 40.909 0.00 0.00 0.00 4.02
131 132 4.817517 AGTACGTCGATTGAAAAGGTCAT 58.182 39.130 0.00 0.00 35.70 3.06
132 133 5.235516 AGTACGTCGATTGAAAAGGTCATT 58.764 37.500 0.00 0.00 35.70 2.57
133 134 5.699458 AGTACGTCGATTGAAAAGGTCATTT 59.301 36.000 0.00 0.00 35.70 2.32
134 135 5.432885 ACGTCGATTGAAAAGGTCATTTT 57.567 34.783 0.00 0.00 43.88 1.82
135 136 5.827666 ACGTCGATTGAAAAGGTCATTTTT 58.172 33.333 0.00 0.00 41.24 1.94
136 137 6.961576 ACGTCGATTGAAAAGGTCATTTTTA 58.038 32.000 0.00 0.00 41.24 1.52
137 138 7.419204 ACGTCGATTGAAAAGGTCATTTTTAA 58.581 30.769 0.00 2.90 41.24 1.52
138 139 7.589954 ACGTCGATTGAAAAGGTCATTTTTAAG 59.410 33.333 0.00 0.00 41.24 1.85
139 140 7.409343 CGTCGATTGAAAAGGTCATTTTTAAGC 60.409 37.037 5.66 5.66 41.24 3.09
140 141 7.381139 GTCGATTGAAAAGGTCATTTTTAAGCA 59.619 33.333 13.47 0.00 40.71 3.91
141 142 8.087750 TCGATTGAAAAGGTCATTTTTAAGCAT 58.912 29.630 13.47 0.00 40.71 3.79
142 143 8.711457 CGATTGAAAAGGTCATTTTTAAGCATT 58.289 29.630 13.47 0.00 40.71 3.56
143 144 9.815936 GATTGAAAAGGTCATTTTTAAGCATTG 57.184 29.630 9.65 0.00 40.51 2.82
144 145 8.729805 TTGAAAAGGTCATTTTTAAGCATTGT 57.270 26.923 0.00 0.00 41.24 2.71
145 146 9.823647 TTGAAAAGGTCATTTTTAAGCATTGTA 57.176 25.926 0.00 0.00 41.24 2.41
146 147 9.995003 TGAAAAGGTCATTTTTAAGCATTGTAT 57.005 25.926 0.00 0.00 41.24 2.29
149 150 8.687824 AAGGTCATTTTTAAGCATTGTATTCG 57.312 30.769 0.00 0.00 0.00 3.34
150 151 7.826690 AGGTCATTTTTAAGCATTGTATTCGT 58.173 30.769 0.00 0.00 0.00 3.85
151 152 8.303876 AGGTCATTTTTAAGCATTGTATTCGTT 58.696 29.630 0.00 0.00 0.00 3.85
152 153 8.583765 GGTCATTTTTAAGCATTGTATTCGTTC 58.416 33.333 0.00 0.00 0.00 3.95
153 154 9.341899 GTCATTTTTAAGCATTGTATTCGTTCT 57.658 29.630 0.00 0.00 0.00 3.01
154 155 9.906660 TCATTTTTAAGCATTGTATTCGTTCTT 57.093 25.926 0.00 0.00 0.00 2.52
155 156 9.941991 CATTTTTAAGCATTGTATTCGTTCTTG 57.058 29.630 0.00 0.00 0.00 3.02
156 157 9.691362 ATTTTTAAGCATTGTATTCGTTCTTGT 57.309 25.926 0.00 0.00 0.00 3.16
160 161 9.982291 TTAAGCATTGTATTCGTTCTTGTAATC 57.018 29.630 0.00 0.00 0.00 1.75
161 162 7.609760 AGCATTGTATTCGTTCTTGTAATCA 57.390 32.000 0.00 0.00 0.00 2.57
162 163 8.039603 AGCATTGTATTCGTTCTTGTAATCAA 57.960 30.769 0.00 0.00 0.00 2.57
169 170 4.670606 CTTGTAATCAAGCGGCGC 57.329 55.556 26.86 26.86 43.34 6.53
170 171 1.793581 CTTGTAATCAAGCGGCGCA 59.206 52.632 35.02 14.60 43.34 6.09
171 172 0.378257 CTTGTAATCAAGCGGCGCAT 59.622 50.000 35.02 21.29 43.34 4.73
172 173 0.098552 TTGTAATCAAGCGGCGCATG 59.901 50.000 35.02 31.87 0.00 4.06
173 174 1.024046 TGTAATCAAGCGGCGCATGT 61.024 50.000 35.02 19.34 0.00 3.21
174 175 0.589729 GTAATCAAGCGGCGCATGTG 60.590 55.000 35.02 26.42 0.00 3.21
175 176 2.321668 TAATCAAGCGGCGCATGTGC 62.322 55.000 35.02 23.05 37.78 4.57
177 178 3.498834 CAAGCGGCGCATGTGCTA 61.499 61.111 35.02 0.00 38.17 3.49
178 179 3.197790 AAGCGGCGCATGTGCTAG 61.198 61.111 35.02 22.96 38.17 3.42
181 182 2.279451 CGGCGCATGTGCTAGCTA 60.279 61.111 28.86 5.45 39.32 3.32
182 183 1.882625 CGGCGCATGTGCTAGCTAA 60.883 57.895 28.86 4.18 39.32 3.09
183 184 1.643832 GGCGCATGTGCTAGCTAAC 59.356 57.895 28.86 7.29 39.32 2.34
184 185 0.811616 GGCGCATGTGCTAGCTAACT 60.812 55.000 28.86 0.00 39.32 2.24
185 186 1.009829 GCGCATGTGCTAGCTAACTT 58.990 50.000 23.77 1.96 39.32 2.66
186 187 1.004504 GCGCATGTGCTAGCTAACTTC 60.005 52.381 23.77 0.11 39.32 3.01
187 188 2.544685 CGCATGTGCTAGCTAACTTCT 58.455 47.619 17.23 0.00 39.32 2.85
188 189 2.537625 CGCATGTGCTAGCTAACTTCTC 59.462 50.000 17.23 0.00 39.32 2.87
189 190 2.869192 GCATGTGCTAGCTAACTTCTCC 59.131 50.000 17.23 0.00 38.21 3.71
190 191 3.431486 GCATGTGCTAGCTAACTTCTCCT 60.431 47.826 17.23 0.00 38.21 3.69
191 192 4.764172 CATGTGCTAGCTAACTTCTCCTT 58.236 43.478 17.23 0.00 0.00 3.36
192 193 4.891992 TGTGCTAGCTAACTTCTCCTTT 57.108 40.909 17.23 0.00 0.00 3.11
193 194 5.228945 TGTGCTAGCTAACTTCTCCTTTT 57.771 39.130 17.23 0.00 0.00 2.27
194 195 4.997395 TGTGCTAGCTAACTTCTCCTTTTG 59.003 41.667 17.23 0.00 0.00 2.44
195 196 4.998033 GTGCTAGCTAACTTCTCCTTTTGT 59.002 41.667 17.23 0.00 0.00 2.83
196 197 6.164176 GTGCTAGCTAACTTCTCCTTTTGTA 58.836 40.000 17.23 0.00 0.00 2.41
197 198 6.649557 GTGCTAGCTAACTTCTCCTTTTGTAA 59.350 38.462 17.23 0.00 0.00 2.41
198 199 7.334671 GTGCTAGCTAACTTCTCCTTTTGTAAT 59.665 37.037 17.23 0.00 0.00 1.89
199 200 8.537016 TGCTAGCTAACTTCTCCTTTTGTAATA 58.463 33.333 17.23 0.00 0.00 0.98
200 201 9.379791 GCTAGCTAACTTCTCCTTTTGTAATAA 57.620 33.333 7.70 0.00 0.00 1.40
203 204 9.438228 AGCTAACTTCTCCTTTTGTAATAAGTC 57.562 33.333 0.00 0.00 0.00 3.01
204 205 8.381387 GCTAACTTCTCCTTTTGTAATAAGTCG 58.619 37.037 0.00 0.00 0.00 4.18
205 206 9.635520 CTAACTTCTCCTTTTGTAATAAGTCGA 57.364 33.333 0.00 0.00 0.00 4.20
206 207 8.897872 AACTTCTCCTTTTGTAATAAGTCGAA 57.102 30.769 0.00 0.00 0.00 3.71
207 208 9.503399 AACTTCTCCTTTTGTAATAAGTCGAAT 57.497 29.630 0.00 0.00 0.00 3.34
208 209 9.152595 ACTTCTCCTTTTGTAATAAGTCGAATC 57.847 33.333 0.00 0.00 0.00 2.52
209 210 9.372369 CTTCTCCTTTTGTAATAAGTCGAATCT 57.628 33.333 0.00 0.00 0.00 2.40
210 211 8.928270 TCTCCTTTTGTAATAAGTCGAATCTC 57.072 34.615 0.00 0.00 0.00 2.75
211 212 8.528643 TCTCCTTTTGTAATAAGTCGAATCTCA 58.471 33.333 0.00 0.00 0.00 3.27
212 213 8.703604 TCCTTTTGTAATAAGTCGAATCTCAG 57.296 34.615 0.00 0.00 0.00 3.35
213 214 8.311836 TCCTTTTGTAATAAGTCGAATCTCAGT 58.688 33.333 0.00 0.00 0.00 3.41
214 215 8.936864 CCTTTTGTAATAAGTCGAATCTCAGTT 58.063 33.333 0.00 0.00 0.00 3.16
223 224 7.564044 AAGTCGAATCTCAGTTAGTTAAACG 57.436 36.000 0.00 0.00 43.29 3.60
224 225 6.906659 AGTCGAATCTCAGTTAGTTAAACGA 58.093 36.000 0.00 0.00 43.29 3.85
225 226 7.022384 AGTCGAATCTCAGTTAGTTAAACGAG 58.978 38.462 0.00 0.00 43.29 4.18
226 227 5.798934 TCGAATCTCAGTTAGTTAAACGAGC 59.201 40.000 0.00 0.00 43.29 5.03
227 228 5.004535 CGAATCTCAGTTAGTTAAACGAGCC 59.995 44.000 0.00 0.00 43.29 4.70
228 229 4.859304 TCTCAGTTAGTTAAACGAGCCA 57.141 40.909 0.00 0.00 43.29 4.75
229 230 4.553323 TCTCAGTTAGTTAAACGAGCCAC 58.447 43.478 0.00 0.00 43.29 5.01
230 231 3.656559 TCAGTTAGTTAAACGAGCCACC 58.343 45.455 0.00 0.00 43.29 4.61
231 232 3.322828 TCAGTTAGTTAAACGAGCCACCT 59.677 43.478 0.00 0.00 43.29 4.00
232 233 3.432252 CAGTTAGTTAAACGAGCCACCTG 59.568 47.826 0.00 0.00 43.29 4.00
233 234 3.322828 AGTTAGTTAAACGAGCCACCTGA 59.677 43.478 0.00 0.00 43.29 3.86
234 235 4.020485 AGTTAGTTAAACGAGCCACCTGAT 60.020 41.667 0.00 0.00 43.29 2.90
235 236 2.699954 AGTTAAACGAGCCACCTGATG 58.300 47.619 0.00 0.00 0.00 3.07
236 237 2.038557 AGTTAAACGAGCCACCTGATGT 59.961 45.455 0.00 0.00 0.00 3.06
237 238 2.380084 TAAACGAGCCACCTGATGTC 57.620 50.000 0.00 0.00 0.00 3.06
238 239 0.396435 AAACGAGCCACCTGATGTCA 59.604 50.000 0.00 0.00 0.00 3.58
239 240 0.615331 AACGAGCCACCTGATGTCAT 59.385 50.000 0.00 0.00 0.00 3.06
240 241 0.615331 ACGAGCCACCTGATGTCATT 59.385 50.000 0.00 0.00 0.00 2.57
241 242 1.012086 CGAGCCACCTGATGTCATTG 58.988 55.000 0.00 0.00 0.00 2.82
242 243 1.676916 CGAGCCACCTGATGTCATTGT 60.677 52.381 0.00 0.00 0.00 2.71
243 244 2.012673 GAGCCACCTGATGTCATTGTC 58.987 52.381 0.00 0.00 0.00 3.18
244 245 1.352017 AGCCACCTGATGTCATTGTCA 59.648 47.619 0.00 0.00 0.00 3.58
245 246 1.741706 GCCACCTGATGTCATTGTCAG 59.258 52.381 0.00 0.00 41.13 3.51
246 247 2.877300 GCCACCTGATGTCATTGTCAGT 60.877 50.000 2.15 0.00 40.12 3.41
247 248 3.619733 GCCACCTGATGTCATTGTCAGTA 60.620 47.826 2.15 0.00 40.12 2.74
248 249 4.578871 CCACCTGATGTCATTGTCAGTAA 58.421 43.478 2.15 0.00 40.12 2.24
249 250 4.633126 CCACCTGATGTCATTGTCAGTAAG 59.367 45.833 2.15 0.00 40.12 2.34
250 251 4.093998 CACCTGATGTCATTGTCAGTAAGC 59.906 45.833 2.15 0.00 40.12 3.09
251 252 4.019860 ACCTGATGTCATTGTCAGTAAGCT 60.020 41.667 2.15 0.00 40.12 3.74
252 253 4.569966 CCTGATGTCATTGTCAGTAAGCTC 59.430 45.833 0.00 0.00 40.12 4.09
253 254 4.176271 TGATGTCATTGTCAGTAAGCTCG 58.824 43.478 0.00 0.00 0.00 5.03
254 255 3.660501 TGTCATTGTCAGTAAGCTCGT 57.339 42.857 0.00 0.00 0.00 4.18
255 256 3.317150 TGTCATTGTCAGTAAGCTCGTG 58.683 45.455 0.00 0.00 0.00 4.35
256 257 2.668457 GTCATTGTCAGTAAGCTCGTGG 59.332 50.000 0.00 0.00 0.00 4.94
257 258 2.560981 TCATTGTCAGTAAGCTCGTGGA 59.439 45.455 0.00 0.00 0.00 4.02
258 259 2.433868 TTGTCAGTAAGCTCGTGGAC 57.566 50.000 0.00 0.00 0.00 4.02
259 260 0.240145 TGTCAGTAAGCTCGTGGACG 59.760 55.000 0.00 0.00 41.45 4.79
271 272 2.937591 TCGTGGACGATGTAAGTGTTC 58.062 47.619 0.00 0.00 44.22 3.18
272 273 2.555325 TCGTGGACGATGTAAGTGTTCT 59.445 45.455 0.00 0.00 44.22 3.01
273 274 3.752747 TCGTGGACGATGTAAGTGTTCTA 59.247 43.478 0.00 0.00 44.22 2.10
274 275 4.397103 TCGTGGACGATGTAAGTGTTCTAT 59.603 41.667 0.00 0.00 44.22 1.98
275 276 5.585844 TCGTGGACGATGTAAGTGTTCTATA 59.414 40.000 0.00 0.00 44.22 1.31
276 277 6.093909 TCGTGGACGATGTAAGTGTTCTATAA 59.906 38.462 0.00 0.00 44.22 0.98
277 278 6.916387 CGTGGACGATGTAAGTGTTCTATAAT 59.084 38.462 0.00 0.00 43.02 1.28
278 279 7.434307 CGTGGACGATGTAAGTGTTCTATAATT 59.566 37.037 0.00 0.00 43.02 1.40
279 280 8.753175 GTGGACGATGTAAGTGTTCTATAATTC 58.247 37.037 0.00 0.00 0.00 2.17
280 281 8.471609 TGGACGATGTAAGTGTTCTATAATTCA 58.528 33.333 0.00 0.00 0.00 2.57
281 282 9.309516 GGACGATGTAAGTGTTCTATAATTCAA 57.690 33.333 0.00 0.00 0.00 2.69
292 293 9.237846 GTGTTCTATAATTCAATAAAGCTTGCC 57.762 33.333 0.00 0.00 0.00 4.52
293 294 8.965819 TGTTCTATAATTCAATAAAGCTTGCCA 58.034 29.630 0.00 0.00 0.00 4.92
294 295 9.971922 GTTCTATAATTCAATAAAGCTTGCCAT 57.028 29.630 0.00 0.00 0.00 4.40
295 296 9.970395 TTCTATAATTCAATAAAGCTTGCCATG 57.030 29.630 0.00 0.00 0.00 3.66
296 297 9.353431 TCTATAATTCAATAAAGCTTGCCATGA 57.647 29.630 0.00 0.00 0.00 3.07
298 299 8.827177 ATAATTCAATAAAGCTTGCCATGATG 57.173 30.769 0.00 0.00 0.00 3.07
299 300 4.659111 TCAATAAAGCTTGCCATGATGG 57.341 40.909 7.21 7.21 41.55 3.51
342 343 6.033513 GCAATCAATCGGTAGTTTAGCAAAAC 59.966 38.462 0.00 0.00 44.47 2.43
343 344 6.811253 ATCAATCGGTAGTTTAGCAAAACA 57.189 33.333 4.04 0.00 46.18 2.83
345 346 4.680171 ATCGGTAGTTTAGCAAAACAGC 57.320 40.909 4.04 0.00 46.18 4.40
346 347 2.477375 TCGGTAGTTTAGCAAAACAGCG 59.523 45.455 13.56 13.56 46.18 5.18
347 348 2.412325 CGGTAGTTTAGCAAAACAGCGG 60.412 50.000 4.04 0.00 46.18 5.52
355 356 1.588667 CAAAACAGCGGTGGTGTGC 60.589 57.895 20.20 0.00 43.73 4.57
438 442 9.911788 ATGAAATTACATGTCTCCATATATCCC 57.088 33.333 0.00 0.00 0.00 3.85
466 470 9.391006 GTTGACCAACCTAGATATGAAATTACA 57.609 33.333 1.60 0.00 35.36 2.41
468 472 9.559732 TGACCAACCTAGATATGAAATTACATG 57.440 33.333 0.00 0.00 0.00 3.21
469 473 8.924511 ACCAACCTAGATATGAAATTACATGG 57.075 34.615 0.00 0.00 0.00 3.66
470 474 8.502738 ACCAACCTAGATATGAAATTACATGGT 58.497 33.333 0.00 0.00 0.00 3.55
471 475 9.354673 CCAACCTAGATATGAAATTACATGGTT 57.645 33.333 0.00 0.00 33.82 3.67
474 478 9.726438 ACCTAGATATGAAATTACATGGTTAGC 57.274 33.333 0.00 0.00 0.00 3.09
475 479 9.950496 CCTAGATATGAAATTACATGGTTAGCT 57.050 33.333 0.00 0.00 0.00 3.32
502 506 2.100631 CGAAGTGCTACAAGGCCGG 61.101 63.158 0.00 0.00 0.00 6.13
522 526 4.997395 CCGGAAGAAAAGAATCTCAAGTGA 59.003 41.667 0.00 0.00 0.00 3.41
523 527 5.470098 CCGGAAGAAAAGAATCTCAAGTGAA 59.530 40.000 0.00 0.00 0.00 3.18
630 637 2.380084 TAACCTTGTGACCATCGAGC 57.620 50.000 0.00 0.00 0.00 5.03
638 645 2.158914 TGTGACCATCGAGCTGCAATAT 60.159 45.455 1.02 0.00 0.00 1.28
710 1038 1.958715 CGACAACGCACCACCATCA 60.959 57.895 0.00 0.00 0.00 3.07
711 1039 1.298157 CGACAACGCACCACCATCAT 61.298 55.000 0.00 0.00 0.00 2.45
713 1041 1.298157 ACAACGCACCACCATCATCG 61.298 55.000 0.00 0.00 0.00 3.84
714 1042 1.018752 CAACGCACCACCATCATCGA 61.019 55.000 0.00 0.00 0.00 3.59
715 1043 1.019278 AACGCACCACCATCATCGAC 61.019 55.000 0.00 0.00 0.00 4.20
718 1046 1.695893 GCACCACCATCATCGACACG 61.696 60.000 0.00 0.00 0.00 4.49
719 1047 0.108851 CACCACCATCATCGACACGA 60.109 55.000 0.00 0.00 41.13 4.35
720 1048 0.108804 ACCACCATCATCGACACGAC 60.109 55.000 0.00 0.00 39.18 4.34
721 1049 0.173481 CCACCATCATCGACACGACT 59.827 55.000 0.00 0.00 39.18 4.18
722 1050 1.404181 CCACCATCATCGACACGACTT 60.404 52.381 0.00 0.00 39.18 3.01
723 1051 2.337583 CACCATCATCGACACGACTTT 58.662 47.619 0.00 0.00 39.18 2.66
724 1052 2.736721 CACCATCATCGACACGACTTTT 59.263 45.455 0.00 0.00 39.18 2.27
815 1143 3.677527 GGGACGTCCACGAGAAGA 58.322 61.111 34.40 0.00 43.02 2.87
820 1149 3.064931 GGACGTCCACGAGAAGAAAAAT 58.935 45.455 29.75 0.00 43.02 1.82
823 1152 5.350640 GGACGTCCACGAGAAGAAAAATAAT 59.649 40.000 29.75 0.00 43.02 1.28
827 1156 6.128391 CGTCCACGAGAAGAAAAATAATGGAA 60.128 38.462 0.00 0.00 43.02 3.53
969 1299 4.704833 TGACGCTTCTGCCCCTGC 62.705 66.667 0.00 0.00 35.36 4.85
974 1304 4.748144 CTTCTGCCCCTGCCCACC 62.748 72.222 0.00 0.00 36.33 4.61
1011 1341 3.790437 ACTGCCATGGCCCTCTCG 61.790 66.667 33.44 16.26 41.09 4.04
1022 1352 2.745100 CCTCTCGGACGTCGACCA 60.745 66.667 10.58 0.89 43.74 4.02
1196 1571 1.819632 CGCTGGAAGTACCCATGGC 60.820 63.158 6.09 0.00 38.00 4.40
1206 1581 4.386951 CCCATGGCCACGTCGTCA 62.387 66.667 8.16 0.00 0.00 4.35
1775 2173 7.175641 GCTGCTATTAATCACAACCCATAAGAT 59.824 37.037 0.00 0.00 0.00 2.40
1798 2203 6.753107 TGCTATTATGCATGATCCTTGATG 57.247 37.500 10.16 0.00 38.12 3.07
1834 2239 7.049754 GCAAGAAATTATGGATGGAAAATGGT 58.950 34.615 0.00 0.00 0.00 3.55
1838 2243 6.648879 AATTATGGATGGAAAATGGTACCG 57.351 37.500 7.57 0.00 0.00 4.02
1842 2247 4.605183 TGGATGGAAAATGGTACCGAAAT 58.395 39.130 7.57 0.00 0.00 2.17
1843 2248 5.020132 TGGATGGAAAATGGTACCGAAATT 58.980 37.500 7.57 0.00 0.00 1.82
1897 2318 1.884926 CGATTTCTGCGCTCCCTCC 60.885 63.158 9.73 0.00 0.00 4.30
1901 2322 1.899437 TTTCTGCGCTCCCTCCGATT 61.899 55.000 9.73 0.00 0.00 3.34
2024 2450 1.953559 TTGCTATCGATCTGTTGGCC 58.046 50.000 0.00 0.00 0.00 5.36
2101 2529 1.380302 GGCACCTGTCACCCTCATT 59.620 57.895 0.00 0.00 0.00 2.57
2151 2582 1.894756 CGGCCGAAAGTTGGTGGAA 60.895 57.895 24.07 0.00 0.00 3.53
2204 2636 1.082879 TCATTCTTCTCCCCCTCCCTT 59.917 52.381 0.00 0.00 0.00 3.95
2222 2672 1.400142 CTTCCTTTGTGTGTGTGCGAA 59.600 47.619 0.00 0.00 0.00 4.70
2236 2686 2.159585 TGTGCGAAAGAAAGTGTGTGTG 60.160 45.455 0.00 0.00 0.00 3.82
2336 2797 4.080919 TGGCGGCTTTATATATGCTCATCT 60.081 41.667 11.43 0.00 0.00 2.90
2337 2798 5.128663 TGGCGGCTTTATATATGCTCATCTA 59.871 40.000 11.43 0.00 0.00 1.98
2413 2877 3.592059 GAGGTAGTCATTGCGGTTTACA 58.408 45.455 0.00 0.00 0.00 2.41
2469 2933 2.093658 AGTGTCTTTGACGAACCACTGT 60.094 45.455 0.00 0.00 34.95 3.55
2498 2962 2.860136 GTGTTGCTTTTTCCAAGCTGAC 59.140 45.455 8.00 7.24 43.38 3.51
2499 2963 2.760092 TGTTGCTTTTTCCAAGCTGACT 59.240 40.909 8.00 0.00 43.38 3.41
2500 2964 3.181487 TGTTGCTTTTTCCAAGCTGACTC 60.181 43.478 8.00 0.00 43.38 3.36
2505 2969 4.202050 GCTTTTTCCAAGCTGACTCTTTCA 60.202 41.667 0.00 0.00 40.01 2.69
2506 2970 5.508657 GCTTTTTCCAAGCTGACTCTTTCAT 60.509 40.000 0.00 0.00 40.01 2.57
2514 2978 2.751259 GCTGACTCTTTCATTGATGGCA 59.249 45.455 0.00 0.00 32.17 4.92
2533 2997 2.119457 CACTTTCGCCACTCTTTTTGC 58.881 47.619 0.00 0.00 0.00 3.68
2597 3065 3.826729 ACACCAGCCATAAGAAAAACCTC 59.173 43.478 0.00 0.00 0.00 3.85
2604 3072 6.148811 CAGCCATAAGAAAAACCTCTACGAAA 59.851 38.462 0.00 0.00 0.00 3.46
2655 3123 8.828688 ATTTACGTATCTCTAATGCCTTTACC 57.171 34.615 0.00 0.00 0.00 2.85
2661 3129 3.262405 TCTCTAATGCCTTTACCAACCGT 59.738 43.478 0.00 0.00 0.00 4.83
2662 3130 3.602483 TCTAATGCCTTTACCAACCGTC 58.398 45.455 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.910199 TCTGATTCCGCTTCAATCTGG 58.090 47.619 0.00 0.00 32.70 3.86
4 5 4.815308 AGAATCTGATTCCGCTTCAATCTG 59.185 41.667 23.12 0.00 40.13 2.90
5 6 5.033589 AGAATCTGATTCCGCTTCAATCT 57.966 39.130 23.12 1.63 40.13 2.40
6 7 5.341407 GAGAATCTGATTCCGCTTCAATC 57.659 43.478 23.12 10.47 40.13 2.67
22 23 7.225734 GCAGAAGTTAATTACCTGGAGAGAATC 59.774 40.741 0.00 0.00 0.00 2.52
23 24 7.051000 GCAGAAGTTAATTACCTGGAGAGAAT 58.949 38.462 0.00 0.00 0.00 2.40
24 25 6.013725 TGCAGAAGTTAATTACCTGGAGAGAA 60.014 38.462 0.00 0.00 0.00 2.87
25 26 5.483937 TGCAGAAGTTAATTACCTGGAGAGA 59.516 40.000 0.00 0.00 0.00 3.10
26 27 5.734720 TGCAGAAGTTAATTACCTGGAGAG 58.265 41.667 0.00 0.00 0.00 3.20
27 28 5.755409 TGCAGAAGTTAATTACCTGGAGA 57.245 39.130 0.00 0.00 0.00 3.71
28 29 6.183360 CCATTGCAGAAGTTAATTACCTGGAG 60.183 42.308 0.00 0.00 0.00 3.86
29 30 5.652014 CCATTGCAGAAGTTAATTACCTGGA 59.348 40.000 0.00 0.00 0.00 3.86
30 31 5.679638 GCCATTGCAGAAGTTAATTACCTGG 60.680 44.000 0.00 0.00 37.47 4.45
31 32 5.343249 GCCATTGCAGAAGTTAATTACCTG 58.657 41.667 0.00 0.00 37.47 4.00
32 33 4.402474 GGCCATTGCAGAAGTTAATTACCT 59.598 41.667 0.00 0.00 40.13 3.08
33 34 4.159506 TGGCCATTGCAGAAGTTAATTACC 59.840 41.667 0.00 0.00 40.13 2.85
34 35 5.323371 TGGCCATTGCAGAAGTTAATTAC 57.677 39.130 0.00 0.00 40.13 1.89
35 36 5.714333 TCTTGGCCATTGCAGAAGTTAATTA 59.286 36.000 6.09 0.00 40.13 1.40
36 37 4.527816 TCTTGGCCATTGCAGAAGTTAATT 59.472 37.500 6.09 0.00 40.13 1.40
37 38 4.088634 TCTTGGCCATTGCAGAAGTTAAT 58.911 39.130 6.09 0.00 40.13 1.40
38 39 3.495331 TCTTGGCCATTGCAGAAGTTAA 58.505 40.909 6.09 0.00 40.13 2.01
39 40 3.153369 TCTTGGCCATTGCAGAAGTTA 57.847 42.857 6.09 0.00 40.13 2.24
40 41 1.999648 TCTTGGCCATTGCAGAAGTT 58.000 45.000 6.09 0.00 40.13 2.66
41 42 1.999648 TTCTTGGCCATTGCAGAAGT 58.000 45.000 6.09 0.00 40.13 3.01
42 43 2.559668 TCTTTCTTGGCCATTGCAGAAG 59.440 45.455 6.09 7.09 40.13 2.85
43 44 2.596346 TCTTTCTTGGCCATTGCAGAA 58.404 42.857 6.09 10.26 40.13 3.02
44 45 2.291209 TCTTTCTTGGCCATTGCAGA 57.709 45.000 6.09 2.75 40.13 4.26
45 46 2.418197 CCATCTTTCTTGGCCATTGCAG 60.418 50.000 6.09 0.00 40.13 4.41
46 47 1.551430 CCATCTTTCTTGGCCATTGCA 59.449 47.619 6.09 0.00 40.13 4.08
47 48 1.551883 ACCATCTTTCTTGGCCATTGC 59.448 47.619 6.09 0.00 37.81 3.56
48 49 2.093869 CCACCATCTTTCTTGGCCATTG 60.094 50.000 6.09 2.48 37.81 2.82
49 50 2.181975 CCACCATCTTTCTTGGCCATT 58.818 47.619 6.09 0.00 37.81 3.16
50 51 1.620524 CCCACCATCTTTCTTGGCCAT 60.621 52.381 6.09 0.00 37.81 4.40
51 52 0.251742 CCCACCATCTTTCTTGGCCA 60.252 55.000 0.00 0.00 37.81 5.36
52 53 0.039618 TCCCACCATCTTTCTTGGCC 59.960 55.000 0.00 0.00 37.81 5.36
53 54 1.753073 CATCCCACCATCTTTCTTGGC 59.247 52.381 0.00 0.00 37.81 4.52
54 55 3.370840 TCATCCCACCATCTTTCTTGG 57.629 47.619 0.00 0.00 40.26 3.61
55 56 3.129988 GCTTCATCCCACCATCTTTCTTG 59.870 47.826 0.00 0.00 0.00 3.02
56 57 3.011032 AGCTTCATCCCACCATCTTTCTT 59.989 43.478 0.00 0.00 0.00 2.52
57 58 2.579860 AGCTTCATCCCACCATCTTTCT 59.420 45.455 0.00 0.00 0.00 2.52
58 59 2.686915 CAGCTTCATCCCACCATCTTTC 59.313 50.000 0.00 0.00 0.00 2.62
59 60 2.731572 CAGCTTCATCCCACCATCTTT 58.268 47.619 0.00 0.00 0.00 2.52
60 61 1.684248 GCAGCTTCATCCCACCATCTT 60.684 52.381 0.00 0.00 0.00 2.40
61 62 0.106819 GCAGCTTCATCCCACCATCT 60.107 55.000 0.00 0.00 0.00 2.90
62 63 1.442526 CGCAGCTTCATCCCACCATC 61.443 60.000 0.00 0.00 0.00 3.51
63 64 1.452651 CGCAGCTTCATCCCACCAT 60.453 57.895 0.00 0.00 0.00 3.55
64 65 2.046023 CGCAGCTTCATCCCACCA 60.046 61.111 0.00 0.00 0.00 4.17
65 66 2.825836 CCGCAGCTTCATCCCACC 60.826 66.667 0.00 0.00 0.00 4.61
66 67 3.512516 GCCGCAGCTTCATCCCAC 61.513 66.667 0.00 0.00 35.50 4.61
76 77 4.748679 CGCAAACAGAGCCGCAGC 62.749 66.667 0.00 0.00 40.32 5.25
77 78 4.093952 CCGCAAACAGAGCCGCAG 62.094 66.667 0.00 0.00 0.00 5.18
78 79 4.617520 TCCGCAAACAGAGCCGCA 62.618 61.111 0.00 0.00 0.00 5.69
79 80 2.690778 ATTCCGCAAACAGAGCCGC 61.691 57.895 0.00 0.00 0.00 6.53
80 81 1.135315 CATTCCGCAAACAGAGCCG 59.865 57.895 0.00 0.00 0.00 5.52
81 82 0.449388 CTCATTCCGCAAACAGAGCC 59.551 55.000 0.00 0.00 0.00 4.70
82 83 1.160137 ACTCATTCCGCAAACAGAGC 58.840 50.000 0.00 0.00 0.00 4.09
83 84 2.807967 TCAACTCATTCCGCAAACAGAG 59.192 45.455 0.00 0.00 0.00 3.35
84 85 2.844946 TCAACTCATTCCGCAAACAGA 58.155 42.857 0.00 0.00 0.00 3.41
85 86 3.837213 ATCAACTCATTCCGCAAACAG 57.163 42.857 0.00 0.00 0.00 3.16
86 87 5.895636 AATATCAACTCATTCCGCAAACA 57.104 34.783 0.00 0.00 0.00 2.83
87 88 7.016361 ACTAATATCAACTCATTCCGCAAAC 57.984 36.000 0.00 0.00 0.00 2.93
88 89 7.042992 CGTACTAATATCAACTCATTCCGCAAA 60.043 37.037 0.00 0.00 0.00 3.68
89 90 6.419710 CGTACTAATATCAACTCATTCCGCAA 59.580 38.462 0.00 0.00 0.00 4.85
90 91 5.918576 CGTACTAATATCAACTCATTCCGCA 59.081 40.000 0.00 0.00 0.00 5.69
91 92 5.919141 ACGTACTAATATCAACTCATTCCGC 59.081 40.000 0.00 0.00 0.00 5.54
92 93 6.302549 CGACGTACTAATATCAACTCATTCCG 59.697 42.308 0.00 0.00 0.00 4.30
93 94 7.358066 TCGACGTACTAATATCAACTCATTCC 58.642 38.462 0.00 0.00 0.00 3.01
94 95 8.951954 ATCGACGTACTAATATCAACTCATTC 57.048 34.615 0.00 0.00 0.00 2.67
95 96 9.181805 CAATCGACGTACTAATATCAACTCATT 57.818 33.333 0.00 0.00 0.00 2.57
96 97 8.565416 TCAATCGACGTACTAATATCAACTCAT 58.435 33.333 0.00 0.00 0.00 2.90
97 98 7.922837 TCAATCGACGTACTAATATCAACTCA 58.077 34.615 0.00 0.00 0.00 3.41
98 99 8.778141 TTCAATCGACGTACTAATATCAACTC 57.222 34.615 0.00 0.00 0.00 3.01
99 100 9.577110 TTTTCAATCGACGTACTAATATCAACT 57.423 29.630 0.00 0.00 0.00 3.16
100 101 9.831054 CTTTTCAATCGACGTACTAATATCAAC 57.169 33.333 0.00 0.00 0.00 3.18
101 102 9.027129 CCTTTTCAATCGACGTACTAATATCAA 57.973 33.333 0.00 0.00 0.00 2.57
102 103 8.192774 ACCTTTTCAATCGACGTACTAATATCA 58.807 33.333 0.00 0.00 0.00 2.15
103 104 8.571461 ACCTTTTCAATCGACGTACTAATATC 57.429 34.615 0.00 0.00 0.00 1.63
104 105 8.192774 TGACCTTTTCAATCGACGTACTAATAT 58.807 33.333 0.00 0.00 0.00 1.28
105 106 7.537715 TGACCTTTTCAATCGACGTACTAATA 58.462 34.615 0.00 0.00 0.00 0.98
106 107 6.392354 TGACCTTTTCAATCGACGTACTAAT 58.608 36.000 0.00 0.00 0.00 1.73
107 108 5.771469 TGACCTTTTCAATCGACGTACTAA 58.229 37.500 0.00 0.00 0.00 2.24
108 109 5.375417 TGACCTTTTCAATCGACGTACTA 57.625 39.130 0.00 0.00 0.00 1.82
109 110 4.247267 TGACCTTTTCAATCGACGTACT 57.753 40.909 0.00 0.00 0.00 2.73
110 111 5.526010 AATGACCTTTTCAATCGACGTAC 57.474 39.130 0.00 0.00 37.92 3.67
111 112 6.548441 AAAATGACCTTTTCAATCGACGTA 57.452 33.333 0.00 0.00 37.92 3.57
112 113 5.432885 AAAATGACCTTTTCAATCGACGT 57.567 34.783 0.00 0.00 37.92 4.34
113 114 7.409343 GCTTAAAAATGACCTTTTCAATCGACG 60.409 37.037 0.00 0.00 37.92 5.12
114 115 7.381139 TGCTTAAAAATGACCTTTTCAATCGAC 59.619 33.333 0.00 0.00 37.92 4.20
115 116 7.429633 TGCTTAAAAATGACCTTTTCAATCGA 58.570 30.769 0.00 0.00 37.92 3.59
116 117 7.636259 TGCTTAAAAATGACCTTTTCAATCG 57.364 32.000 0.00 0.00 37.92 3.34
117 118 9.815936 CAATGCTTAAAAATGACCTTTTCAATC 57.184 29.630 0.00 0.00 37.92 2.67
118 119 9.341078 ACAATGCTTAAAAATGACCTTTTCAAT 57.659 25.926 0.00 0.00 37.92 2.57
119 120 8.729805 ACAATGCTTAAAAATGACCTTTTCAA 57.270 26.923 0.00 0.00 37.92 2.69
120 121 9.995003 ATACAATGCTTAAAAATGACCTTTTCA 57.005 25.926 0.00 0.00 36.01 2.69
123 124 9.139174 CGAATACAATGCTTAAAAATGACCTTT 57.861 29.630 0.00 0.00 0.00 3.11
124 125 8.303876 ACGAATACAATGCTTAAAAATGACCTT 58.696 29.630 0.00 0.00 0.00 3.50
125 126 7.826690 ACGAATACAATGCTTAAAAATGACCT 58.173 30.769 0.00 0.00 0.00 3.85
126 127 8.460831 AACGAATACAATGCTTAAAAATGACC 57.539 30.769 0.00 0.00 0.00 4.02
127 128 9.341899 AGAACGAATACAATGCTTAAAAATGAC 57.658 29.630 0.00 0.00 0.00 3.06
128 129 9.906660 AAGAACGAATACAATGCTTAAAAATGA 57.093 25.926 0.00 0.00 0.00 2.57
129 130 9.941991 CAAGAACGAATACAATGCTTAAAAATG 57.058 29.630 0.00 0.00 0.00 2.32
130 131 9.691362 ACAAGAACGAATACAATGCTTAAAAAT 57.309 25.926 0.00 0.00 0.00 1.82
134 135 9.982291 GATTACAAGAACGAATACAATGCTTAA 57.018 29.630 0.00 0.00 0.00 1.85
135 136 9.157104 TGATTACAAGAACGAATACAATGCTTA 57.843 29.630 0.00 0.00 0.00 3.09
136 137 8.039603 TGATTACAAGAACGAATACAATGCTT 57.960 30.769 0.00 0.00 0.00 3.91
137 138 7.609760 TGATTACAAGAACGAATACAATGCT 57.390 32.000 0.00 0.00 0.00 3.79
153 154 0.098552 CATGCGCCGCTTGATTACAA 59.901 50.000 18.94 0.00 36.06 2.41
154 155 1.024046 ACATGCGCCGCTTGATTACA 61.024 50.000 28.47 0.00 37.20 2.41
155 156 0.589729 CACATGCGCCGCTTGATTAC 60.590 55.000 28.47 0.00 37.20 1.89
156 157 1.720894 CACATGCGCCGCTTGATTA 59.279 52.632 28.47 0.00 37.20 1.75
157 158 2.486504 CACATGCGCCGCTTGATT 59.513 55.556 28.47 7.09 37.20 2.57
158 159 4.183686 GCACATGCGCCGCTTGAT 62.184 61.111 28.47 12.05 37.20 2.57
168 169 2.869192 GGAGAAGTTAGCTAGCACATGC 59.131 50.000 18.83 0.00 42.49 4.06
169 170 4.399004 AGGAGAAGTTAGCTAGCACATG 57.601 45.455 18.83 0.00 0.00 3.21
170 171 5.428184 AAAGGAGAAGTTAGCTAGCACAT 57.572 39.130 18.83 0.00 0.00 3.21
171 172 4.891992 AAAGGAGAAGTTAGCTAGCACA 57.108 40.909 18.83 0.42 0.00 4.57
172 173 4.998033 ACAAAAGGAGAAGTTAGCTAGCAC 59.002 41.667 18.83 7.34 0.00 4.40
173 174 5.228945 ACAAAAGGAGAAGTTAGCTAGCA 57.771 39.130 18.83 0.00 0.00 3.49
174 175 7.851387 ATTACAAAAGGAGAAGTTAGCTAGC 57.149 36.000 6.62 6.62 0.00 3.42
177 178 9.438228 GACTTATTACAAAAGGAGAAGTTAGCT 57.562 33.333 0.00 0.00 0.00 3.32
178 179 8.381387 CGACTTATTACAAAAGGAGAAGTTAGC 58.619 37.037 0.00 0.00 0.00 3.09
179 180 9.635520 TCGACTTATTACAAAAGGAGAAGTTAG 57.364 33.333 0.00 0.00 0.00 2.34
180 181 9.985730 TTCGACTTATTACAAAAGGAGAAGTTA 57.014 29.630 0.00 0.00 0.00 2.24
181 182 8.897872 TTCGACTTATTACAAAAGGAGAAGTT 57.102 30.769 0.00 0.00 0.00 2.66
182 183 9.152595 GATTCGACTTATTACAAAAGGAGAAGT 57.847 33.333 0.00 0.00 31.70 3.01
183 184 9.372369 AGATTCGACTTATTACAAAAGGAGAAG 57.628 33.333 0.00 0.00 31.70 2.85
184 185 9.367444 GAGATTCGACTTATTACAAAAGGAGAA 57.633 33.333 0.00 0.00 32.27 2.87
185 186 8.528643 TGAGATTCGACTTATTACAAAAGGAGA 58.471 33.333 0.00 0.00 0.00 3.71
186 187 8.703604 TGAGATTCGACTTATTACAAAAGGAG 57.296 34.615 0.00 0.00 0.00 3.69
187 188 8.311836 ACTGAGATTCGACTTATTACAAAAGGA 58.688 33.333 0.00 0.00 0.00 3.36
188 189 8.480643 ACTGAGATTCGACTTATTACAAAAGG 57.519 34.615 0.00 0.00 0.00 3.11
197 198 9.286946 CGTTTAACTAACTGAGATTCGACTTAT 57.713 33.333 0.00 0.00 34.46 1.73
198 199 8.506437 TCGTTTAACTAACTGAGATTCGACTTA 58.494 33.333 0.00 0.00 34.46 2.24
199 200 7.365741 TCGTTTAACTAACTGAGATTCGACTT 58.634 34.615 0.00 0.00 34.46 3.01
200 201 6.906659 TCGTTTAACTAACTGAGATTCGACT 58.093 36.000 0.00 0.00 34.46 4.18
201 202 6.237253 GCTCGTTTAACTAACTGAGATTCGAC 60.237 42.308 0.00 0.00 38.50 4.20
202 203 5.798934 GCTCGTTTAACTAACTGAGATTCGA 59.201 40.000 0.00 0.00 38.50 3.71
203 204 5.004535 GGCTCGTTTAACTAACTGAGATTCG 59.995 44.000 0.00 0.00 38.50 3.34
204 205 5.867716 TGGCTCGTTTAACTAACTGAGATTC 59.132 40.000 0.00 0.00 38.50 2.52
205 206 5.638234 GTGGCTCGTTTAACTAACTGAGATT 59.362 40.000 0.00 0.00 38.50 2.40
206 207 5.169295 GTGGCTCGTTTAACTAACTGAGAT 58.831 41.667 0.00 0.00 38.50 2.75
207 208 4.553323 GTGGCTCGTTTAACTAACTGAGA 58.447 43.478 0.00 0.00 38.50 3.27
208 209 3.678548 GGTGGCTCGTTTAACTAACTGAG 59.321 47.826 0.00 0.00 38.87 3.35
209 210 3.322828 AGGTGGCTCGTTTAACTAACTGA 59.677 43.478 0.00 0.00 34.46 3.41
210 211 3.432252 CAGGTGGCTCGTTTAACTAACTG 59.568 47.826 0.00 0.00 34.46 3.16
211 212 3.322828 TCAGGTGGCTCGTTTAACTAACT 59.677 43.478 0.00 0.00 34.46 2.24
212 213 3.656559 TCAGGTGGCTCGTTTAACTAAC 58.343 45.455 0.00 0.00 0.00 2.34
213 214 4.250464 CATCAGGTGGCTCGTTTAACTAA 58.750 43.478 0.00 0.00 0.00 2.24
214 215 3.259876 ACATCAGGTGGCTCGTTTAACTA 59.740 43.478 0.00 0.00 0.00 2.24
215 216 2.038557 ACATCAGGTGGCTCGTTTAACT 59.961 45.455 0.00 0.00 0.00 2.24
216 217 2.415512 GACATCAGGTGGCTCGTTTAAC 59.584 50.000 0.00 0.00 31.05 2.01
217 218 2.037902 TGACATCAGGTGGCTCGTTTAA 59.962 45.455 0.00 0.00 36.52 1.52
218 219 1.621317 TGACATCAGGTGGCTCGTTTA 59.379 47.619 0.00 0.00 36.52 2.01
219 220 0.396435 TGACATCAGGTGGCTCGTTT 59.604 50.000 0.00 0.00 36.52 3.60
220 221 0.615331 ATGACATCAGGTGGCTCGTT 59.385 50.000 0.00 0.00 36.52 3.85
221 222 0.615331 AATGACATCAGGTGGCTCGT 59.385 50.000 0.00 0.00 36.52 4.18
222 223 1.012086 CAATGACATCAGGTGGCTCG 58.988 55.000 0.00 0.00 36.52 5.03
223 224 2.012673 GACAATGACATCAGGTGGCTC 58.987 52.381 0.00 0.00 36.52 4.70
224 225 1.352017 TGACAATGACATCAGGTGGCT 59.648 47.619 0.00 0.00 36.52 4.75
225 226 1.741706 CTGACAATGACATCAGGTGGC 59.258 52.381 0.00 0.00 38.97 5.01
226 227 3.063510 ACTGACAATGACATCAGGTGG 57.936 47.619 8.92 0.00 45.55 4.61
227 228 4.093998 GCTTACTGACAATGACATCAGGTG 59.906 45.833 8.92 0.00 45.55 4.00
228 229 4.019860 AGCTTACTGACAATGACATCAGGT 60.020 41.667 8.92 0.00 45.55 4.00
229 230 4.511527 AGCTTACTGACAATGACATCAGG 58.488 43.478 8.92 0.00 45.55 3.86
230 231 4.267214 CGAGCTTACTGACAATGACATCAG 59.733 45.833 3.48 3.48 46.49 2.90
231 232 4.176271 CGAGCTTACTGACAATGACATCA 58.824 43.478 0.00 0.00 0.00 3.07
232 233 4.032217 CACGAGCTTACTGACAATGACATC 59.968 45.833 0.00 0.00 0.00 3.06
233 234 3.928992 CACGAGCTTACTGACAATGACAT 59.071 43.478 0.00 0.00 0.00 3.06
234 235 3.317150 CACGAGCTTACTGACAATGACA 58.683 45.455 0.00 0.00 0.00 3.58
235 236 2.668457 CCACGAGCTTACTGACAATGAC 59.332 50.000 0.00 0.00 0.00 3.06
236 237 2.560981 TCCACGAGCTTACTGACAATGA 59.439 45.455 0.00 0.00 0.00 2.57
237 238 2.668457 GTCCACGAGCTTACTGACAATG 59.332 50.000 0.00 0.00 0.00 2.82
238 239 2.671351 CGTCCACGAGCTTACTGACAAT 60.671 50.000 0.00 0.00 43.02 2.71
239 240 1.335597 CGTCCACGAGCTTACTGACAA 60.336 52.381 0.00 0.00 43.02 3.18
240 241 0.240145 CGTCCACGAGCTTACTGACA 59.760 55.000 0.00 0.00 43.02 3.58
241 242 0.520404 TCGTCCACGAGCTTACTGAC 59.480 55.000 0.00 0.00 44.22 3.51
242 243 2.936928 TCGTCCACGAGCTTACTGA 58.063 52.632 0.00 0.00 44.22 3.41
252 253 2.942710 AGAACACTTACATCGTCCACG 58.057 47.619 0.00 0.00 41.45 4.94
253 254 8.644318 AATTATAGAACACTTACATCGTCCAC 57.356 34.615 0.00 0.00 0.00 4.02
254 255 8.471609 TGAATTATAGAACACTTACATCGTCCA 58.528 33.333 0.00 0.00 0.00 4.02
255 256 8.867112 TGAATTATAGAACACTTACATCGTCC 57.133 34.615 0.00 0.00 0.00 4.79
266 267 9.237846 GGCAAGCTTTATTGAATTATAGAACAC 57.762 33.333 0.00 0.00 31.55 3.32
267 268 8.965819 TGGCAAGCTTTATTGAATTATAGAACA 58.034 29.630 0.00 0.00 31.55 3.18
268 269 9.971922 ATGGCAAGCTTTATTGAATTATAGAAC 57.028 29.630 0.00 0.00 31.55 3.01
269 270 9.970395 CATGGCAAGCTTTATTGAATTATAGAA 57.030 29.630 0.00 0.00 31.55 2.10
270 271 9.353431 TCATGGCAAGCTTTATTGAATTATAGA 57.647 29.630 0.00 0.00 31.55 1.98
272 273 9.917129 CATCATGGCAAGCTTTATTGAATTATA 57.083 29.630 0.00 0.00 31.55 0.98
273 274 7.876068 CCATCATGGCAAGCTTTATTGAATTAT 59.124 33.333 0.00 0.00 31.55 1.28
274 275 7.211573 CCATCATGGCAAGCTTTATTGAATTA 58.788 34.615 0.00 0.00 31.55 1.40
275 276 6.053005 CCATCATGGCAAGCTTTATTGAATT 58.947 36.000 0.00 0.00 31.55 2.17
276 277 5.607477 CCATCATGGCAAGCTTTATTGAAT 58.393 37.500 0.00 0.00 31.55 2.57
277 278 5.013568 CCATCATGGCAAGCTTTATTGAA 57.986 39.130 0.00 0.00 31.55 2.69
278 279 4.659111 CCATCATGGCAAGCTTTATTGA 57.341 40.909 0.00 0.00 31.55 2.57
312 313 6.806739 GCTAAACTACCGATTGATTGCTTTTT 59.193 34.615 0.00 0.00 0.00 1.94
313 314 6.072175 TGCTAAACTACCGATTGATTGCTTTT 60.072 34.615 0.00 0.00 0.00 2.27
314 315 5.414454 TGCTAAACTACCGATTGATTGCTTT 59.586 36.000 0.00 0.00 0.00 3.51
315 316 4.941263 TGCTAAACTACCGATTGATTGCTT 59.059 37.500 0.00 0.00 0.00 3.91
316 317 4.513442 TGCTAAACTACCGATTGATTGCT 58.487 39.130 0.00 0.00 0.00 3.91
317 318 4.875544 TGCTAAACTACCGATTGATTGC 57.124 40.909 0.00 0.00 0.00 3.56
318 319 7.081349 TGTTTTGCTAAACTACCGATTGATTG 58.919 34.615 21.43 0.00 43.25 2.67
323 324 4.378046 CGCTGTTTTGCTAAACTACCGATT 60.378 41.667 21.43 0.00 43.25 3.34
324 325 3.124636 CGCTGTTTTGCTAAACTACCGAT 59.875 43.478 21.43 0.00 43.25 4.18
342 343 4.935495 ACTGGCACACCACCGCTG 62.935 66.667 0.00 0.00 42.67 5.18
343 344 4.626081 GACTGGCACACCACCGCT 62.626 66.667 0.00 0.00 42.67 5.52
345 346 2.972505 GTGACTGGCACACCACCG 60.973 66.667 9.20 0.00 46.91 4.94
355 356 4.060038 AGCTAACGGAATATGTGACTGG 57.940 45.455 0.00 0.00 0.00 4.00
360 361 7.387673 TGGATCAATTAGCTAACGGAATATGTG 59.612 37.037 8.70 0.00 0.00 3.21
361 362 7.450074 TGGATCAATTAGCTAACGGAATATGT 58.550 34.615 8.70 0.00 0.00 2.29
365 366 5.707298 CCATGGATCAATTAGCTAACGGAAT 59.293 40.000 5.56 0.35 0.00 3.01
368 369 3.753272 CCCATGGATCAATTAGCTAACGG 59.247 47.826 15.22 4.07 0.00 4.44
459 463 9.730420 CGCTTTAATTAGCTAACCATGTAATTT 57.270 29.630 8.70 0.00 39.03 1.82
461 465 8.671384 TCGCTTTAATTAGCTAACCATGTAAT 57.329 30.769 8.70 0.00 39.03 1.89
462 466 8.495361 TTCGCTTTAATTAGCTAACCATGTAA 57.505 30.769 8.70 0.48 39.03 2.41
463 467 7.767198 ACTTCGCTTTAATTAGCTAACCATGTA 59.233 33.333 8.70 0.00 39.03 2.29
464 468 6.598064 ACTTCGCTTTAATTAGCTAACCATGT 59.402 34.615 8.70 0.00 39.03 3.21
466 470 6.458342 GCACTTCGCTTTAATTAGCTAACCAT 60.458 38.462 8.70 0.90 39.03 3.55
467 471 5.163794 GCACTTCGCTTTAATTAGCTAACCA 60.164 40.000 8.70 0.00 39.03 3.67
468 472 5.263948 GCACTTCGCTTTAATTAGCTAACC 58.736 41.667 8.70 0.00 39.03 2.85
484 488 2.100631 CCGGCCTTGTAGCACTTCG 61.101 63.158 0.00 0.00 0.00 3.79
490 494 1.468914 CTTTTCTTCCGGCCTTGTAGC 59.531 52.381 0.00 0.00 0.00 3.58
502 506 8.147642 TCACTTCACTTGAGATTCTTTTCTTC 57.852 34.615 0.00 0.00 0.00 2.87
542 546 3.499918 CGACTGAGACTGCCTTTTGATTT 59.500 43.478 0.00 0.00 0.00 2.17
549 553 0.897863 AGCTCGACTGAGACTGCCTT 60.898 55.000 0.00 0.00 45.57 4.35
550 554 0.034960 TAGCTCGACTGAGACTGCCT 60.035 55.000 0.00 0.00 45.57 4.75
551 555 0.380378 CTAGCTCGACTGAGACTGCC 59.620 60.000 0.00 0.00 45.57 4.85
552 556 0.248458 GCTAGCTCGACTGAGACTGC 60.248 60.000 7.70 0.00 45.57 4.40
553 557 1.063912 CAGCTAGCTCGACTGAGACTG 59.936 57.143 16.15 0.00 45.57 3.51
751 1079 0.037326 GAGTGCCCACTGACGATGAA 60.037 55.000 5.53 0.00 42.66 2.57
815 1143 3.525862 TGGGCCCACTTCCATTATTTTT 58.474 40.909 24.45 0.00 0.00 1.94
820 1149 1.360852 ACATTGGGCCCACTTCCATTA 59.639 47.619 28.70 7.69 32.48 1.90
823 1152 1.228831 CACATTGGGCCCACTTCCA 60.229 57.895 28.70 10.56 0.00 3.53
864 1194 2.708051 GGCCCTATTTATAGCCCGTTC 58.292 52.381 0.00 0.00 39.60 3.95
969 1299 2.584608 CAGTTCGCTAGGGGTGGG 59.415 66.667 6.99 0.00 0.00 4.61
1022 1352 1.606889 AGGAAGGCCTCGAAGTCGT 60.607 57.895 5.23 0.00 42.19 4.34
1497 1875 4.819761 GCGAGCGTGATGAGCCCA 62.820 66.667 0.00 0.00 34.64 5.36
1713 2103 1.710249 TCGTCGTTCGTTCGTTCAATC 59.290 47.619 0.00 0.00 40.80 2.67
1716 2106 0.839477 GTTCGTCGTTCGTTCGTTCA 59.161 50.000 0.00 0.00 40.80 3.18
1741 2139 2.624364 TGATTAATAGCAGCCCGTCGTA 59.376 45.455 0.00 0.00 0.00 3.43
1742 2140 1.411246 TGATTAATAGCAGCCCGTCGT 59.589 47.619 0.00 0.00 0.00 4.34
1743 2141 1.792949 GTGATTAATAGCAGCCCGTCG 59.207 52.381 0.00 0.00 0.00 5.12
1819 2224 3.943671 TCGGTACCATTTTCCATCCAT 57.056 42.857 13.54 0.00 0.00 3.41
1834 2239 7.618343 GCAAGTACGTACGTTTTAATTTCGGTA 60.618 37.037 27.92 0.00 0.00 4.02
1838 2243 6.030693 GCAGCAAGTACGTACGTTTTAATTTC 59.969 38.462 27.92 8.73 0.00 2.17
1842 2247 4.050553 AGCAGCAAGTACGTACGTTTTAA 58.949 39.130 27.92 5.17 0.00 1.52
1843 2248 3.641648 AGCAGCAAGTACGTACGTTTTA 58.358 40.909 27.92 5.61 0.00 1.52
1897 2318 1.029408 TGGCCGTCCATTTCCAATCG 61.029 55.000 0.00 0.00 37.47 3.34
1901 2322 1.570857 ATCCTGGCCGTCCATTTCCA 61.571 55.000 0.00 0.00 42.51 3.53
1999 2425 3.808466 ACAGATCGATAGCAAAGCTGA 57.192 42.857 13.21 0.00 40.10 4.26
2057 2483 6.126863 ACATGAGGAATAAGAAGGACACAA 57.873 37.500 0.00 0.00 0.00 3.33
2123 2551 3.171828 TTTCGGCCGGTGAGCAAGA 62.172 57.895 27.83 0.00 0.00 3.02
2169 2600 6.584488 AGAAGAATGATGAGACAATGAGGAG 58.416 40.000 0.00 0.00 0.00 3.69
2204 2636 1.400142 CTTTCGCACACACACAAAGGA 59.600 47.619 0.00 0.00 0.00 3.36
2222 2672 9.719355 TTCATACATATACACACACACTTTCTT 57.281 29.630 0.00 0.00 0.00 2.52
2284 2737 6.157211 CGTATGTACCCATAGGAGAATCAAC 58.843 44.000 0.00 0.00 40.32 3.18
2286 2739 4.219944 GCGTATGTACCCATAGGAGAATCA 59.780 45.833 6.60 0.00 40.32 2.57
2312 2770 3.334691 TGAGCATATATAAAGCCGCCAC 58.665 45.455 6.86 0.00 0.00 5.01
2336 2797 6.127168 CCACCACCACTAGAAACAGACATATA 60.127 42.308 0.00 0.00 0.00 0.86
2337 2798 5.338381 CCACCACCACTAGAAACAGACATAT 60.338 44.000 0.00 0.00 0.00 1.78
2351 2815 3.941188 CTCGCCACCACCACCACT 61.941 66.667 0.00 0.00 0.00 4.00
2426 2890 6.258068 CACTAGAGACGTAAAATGATTTCCCC 59.742 42.308 0.00 0.00 0.00 4.81
2469 2933 5.398603 TGGAAAAAGCAACACAAAAGAGA 57.601 34.783 0.00 0.00 0.00 3.10
2498 2962 4.409570 CGAAAGTGCCATCAATGAAAGAG 58.590 43.478 0.00 0.00 0.00 2.85
2499 2963 3.366273 GCGAAAGTGCCATCAATGAAAGA 60.366 43.478 0.00 0.00 0.00 2.52
2500 2964 2.919229 GCGAAAGTGCCATCAATGAAAG 59.081 45.455 0.00 0.00 0.00 2.62
2514 2978 2.492019 GCAAAAAGAGTGGCGAAAGT 57.508 45.000 0.00 0.00 0.00 2.66
2530 2994 1.370609 TTCCACAACGTTCTTCGCAA 58.629 45.000 0.00 0.00 44.19 4.85
2533 2997 3.736213 CATCATTCCACAACGTTCTTCG 58.264 45.455 0.00 0.00 46.00 3.79
2624 3092 8.426489 AGGCATTAGAGATACGTAAATTACCAA 58.574 33.333 0.00 0.00 0.00 3.67
2626 3094 8.828688 AAGGCATTAGAGATACGTAAATTACC 57.171 34.615 0.00 0.00 0.00 2.85
2629 3097 9.269453 GGTAAAGGCATTAGAGATACGTAAATT 57.731 33.333 0.00 0.00 0.00 1.82
2630 3098 8.426489 TGGTAAAGGCATTAGAGATACGTAAAT 58.574 33.333 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.