Multiple sequence alignment - TraesCS5A01G011100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G011100 chr5A 100.000 3908 0 0 1 3908 7359254 7363161 0.000000e+00 7217.0
1 TraesCS5A01G011100 chr5A 81.176 170 10 8 301 448 689884243 689884412 2.470000e-22 117.0
2 TraesCS5A01G011100 chr5D 93.516 2005 103 15 1915 3908 9120396 9122384 0.000000e+00 2957.0
3 TraesCS5A01G011100 chr5D 88.610 878 64 18 722 1594 9119131 9119977 0.000000e+00 1035.0
4 TraesCS5A01G011100 chr5D 83.051 236 28 5 452 675 9118888 9119123 1.840000e-48 204.0
5 TraesCS5A01G011100 chr5B 87.389 2474 197 36 550 2958 9260864 9263287 0.000000e+00 2734.0
6 TraesCS5A01G011100 chr5B 92.734 523 23 5 3398 3908 9263638 9264157 0.000000e+00 741.0
7 TraesCS5A01G011100 chr5B 89.931 288 24 4 3087 3371 9263359 9263644 2.220000e-97 366.0
8 TraesCS5A01G011100 chr5B 83.030 165 12 7 301 451 516475647 516475485 6.810000e-28 135.0
9 TraesCS5A01G011100 chr5B 95.082 61 3 0 302 362 115417600 115417660 3.210000e-16 97.1
10 TraesCS5A01G011100 chr3B 84.049 163 11 6 301 449 764723481 764723642 4.070000e-30 143.0
11 TraesCS5A01G011100 chr7B 77.692 260 33 8 780 1037 743835542 743835306 6.810000e-28 135.0
12 TraesCS5A01G011100 chr3A 81.871 171 9 8 301 449 744189100 744188930 1.470000e-24 124.0
13 TraesCS5A01G011100 chr3A 81.871 171 9 8 301 449 744210156 744209986 1.470000e-24 124.0
14 TraesCS5A01G011100 chr4A 81.657 169 9 8 302 448 598442438 598442606 1.910000e-23 121.0
15 TraesCS5A01G011100 chr6B 81.548 168 9 8 302 447 204161865 204161698 6.860000e-23 119.0
16 TraesCS5A01G011100 chr1A 81.548 168 9 8 302 447 34558674 34558507 6.860000e-23 119.0
17 TraesCS5A01G011100 chr1D 91.429 70 6 0 377 446 481335595 481335664 3.210000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G011100 chr5A 7359254 7363161 3907 False 7217.000000 7217 100.000000 1 3908 1 chr5A.!!$F1 3907
1 TraesCS5A01G011100 chr5D 9118888 9122384 3496 False 1398.666667 2957 88.392333 452 3908 3 chr5D.!!$F1 3456
2 TraesCS5A01G011100 chr5B 9260864 9264157 3293 False 1280.333333 2734 90.018000 550 3908 3 chr5B.!!$F2 3358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.103208 GTCTCTAGTGCCCCACGATG 59.897 60.0 0.0 0.0 39.64 3.84 F
1360 1396 0.107993 CTGGTGGCATCATCGTCAGT 60.108 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1561 0.029300 CCAACCAAACACACAGCTCG 59.971 55.0 0.00 0.0 0.0 5.03 R
2955 3163 0.108898 GCAGCTGTGTCTCGATCAGT 60.109 55.0 16.64 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.419297 TCACCACGCTATATTTATTCAGTATTC 57.581 33.333 0.00 0.00 0.00 1.75
27 28 8.373256 CACCACGCTATATTTATTCAGTATTCG 58.627 37.037 0.00 0.00 0.00 3.34
28 29 8.086522 ACCACGCTATATTTATTCAGTATTCGT 58.913 33.333 0.00 0.00 0.00 3.85
29 30 8.922676 CCACGCTATATTTATTCAGTATTCGTT 58.077 33.333 0.00 0.00 0.00 3.85
39 40 8.882415 TTATTCAGTATTCGTTATCCAAGGAC 57.118 34.615 0.00 0.00 0.00 3.85
40 41 5.925506 TCAGTATTCGTTATCCAAGGACA 57.074 39.130 0.00 0.00 0.00 4.02
41 42 6.288941 TCAGTATTCGTTATCCAAGGACAA 57.711 37.500 0.00 0.00 0.00 3.18
42 43 6.703319 TCAGTATTCGTTATCCAAGGACAAA 58.297 36.000 0.00 0.00 0.00 2.83
43 44 6.816640 TCAGTATTCGTTATCCAAGGACAAAG 59.183 38.462 0.00 0.00 0.00 2.77
44 45 4.965119 ATTCGTTATCCAAGGACAAAGC 57.035 40.909 0.00 0.00 0.00 3.51
45 46 3.410631 TCGTTATCCAAGGACAAAGCA 57.589 42.857 0.00 0.00 0.00 3.91
46 47 3.071479 TCGTTATCCAAGGACAAAGCAC 58.929 45.455 0.00 0.00 0.00 4.40
47 48 3.074412 CGTTATCCAAGGACAAAGCACT 58.926 45.455 0.00 0.00 0.00 4.40
48 49 3.125316 CGTTATCCAAGGACAAAGCACTC 59.875 47.826 0.00 0.00 0.00 3.51
49 50 1.813513 ATCCAAGGACAAAGCACTCG 58.186 50.000 0.00 0.00 0.00 4.18
50 51 0.884704 TCCAAGGACAAAGCACTCGC 60.885 55.000 0.00 0.00 38.99 5.03
62 63 0.579156 GCACTCGCTATGCTACTTGC 59.421 55.000 0.00 0.00 40.08 4.01
63 64 2.068942 GCACTCGCTATGCTACTTGCA 61.069 52.381 0.00 0.00 45.70 4.08
64 65 3.562143 GCACTCGCTATGCTACTTGCAA 61.562 50.000 0.00 0.00 45.14 4.08
65 66 5.593488 GCACTCGCTATGCTACTTGCAAC 62.593 52.174 0.00 0.00 45.14 4.17
79 80 8.093063 GCTACTTGCAACTACAAATAAAATCG 57.907 34.615 0.00 0.00 42.31 3.34
80 81 7.749126 GCTACTTGCAACTACAAATAAAATCGT 59.251 33.333 0.00 0.00 42.31 3.73
81 82 9.262472 CTACTTGCAACTACAAATAAAATCGTC 57.738 33.333 0.00 0.00 0.00 4.20
82 83 7.081976 ACTTGCAACTACAAATAAAATCGTCC 58.918 34.615 0.00 0.00 0.00 4.79
83 84 6.561737 TGCAACTACAAATAAAATCGTCCA 57.438 33.333 0.00 0.00 0.00 4.02
84 85 6.375377 TGCAACTACAAATAAAATCGTCCAC 58.625 36.000 0.00 0.00 0.00 4.02
85 86 5.798434 GCAACTACAAATAAAATCGTCCACC 59.202 40.000 0.00 0.00 0.00 4.61
86 87 6.568844 GCAACTACAAATAAAATCGTCCACCA 60.569 38.462 0.00 0.00 0.00 4.17
87 88 7.364200 CAACTACAAATAAAATCGTCCACCAA 58.636 34.615 0.00 0.00 0.00 3.67
88 89 7.141100 ACTACAAATAAAATCGTCCACCAAG 57.859 36.000 0.00 0.00 0.00 3.61
89 90 4.805219 ACAAATAAAATCGTCCACCAAGC 58.195 39.130 0.00 0.00 0.00 4.01
90 91 4.522789 ACAAATAAAATCGTCCACCAAGCT 59.477 37.500 0.00 0.00 0.00 3.74
91 92 5.010617 ACAAATAAAATCGTCCACCAAGCTT 59.989 36.000 0.00 0.00 0.00 3.74
92 93 4.701956 ATAAAATCGTCCACCAAGCTTG 57.298 40.909 19.93 19.93 0.00 4.01
93 94 2.270352 AAATCGTCCACCAAGCTTGA 57.730 45.000 28.05 6.10 0.00 3.02
94 95 1.523758 AATCGTCCACCAAGCTTGAC 58.476 50.000 28.05 16.09 0.00 3.18
95 96 0.396435 ATCGTCCACCAAGCTTGACA 59.604 50.000 28.05 8.86 0.00 3.58
96 97 0.179234 TCGTCCACCAAGCTTGACAA 59.821 50.000 28.05 7.32 0.00 3.18
97 98 0.307760 CGTCCACCAAGCTTGACAAC 59.692 55.000 28.05 17.12 0.00 3.32
98 99 1.388547 GTCCACCAAGCTTGACAACA 58.611 50.000 28.05 4.58 0.00 3.33
99 100 1.065551 GTCCACCAAGCTTGACAACAC 59.934 52.381 28.05 12.87 0.00 3.32
100 101 1.064758 TCCACCAAGCTTGACAACACT 60.065 47.619 28.05 0.00 0.00 3.55
101 102 1.066002 CCACCAAGCTTGACAACACTG 59.934 52.381 28.05 10.55 0.00 3.66
102 103 2.016318 CACCAAGCTTGACAACACTGA 58.984 47.619 28.05 0.00 0.00 3.41
103 104 2.620115 CACCAAGCTTGACAACACTGAT 59.380 45.455 28.05 0.00 0.00 2.90
104 105 2.880890 ACCAAGCTTGACAACACTGATC 59.119 45.455 28.05 0.00 0.00 2.92
105 106 2.227388 CCAAGCTTGACAACACTGATCC 59.773 50.000 28.05 0.00 0.00 3.36
106 107 2.880268 CAAGCTTGACAACACTGATCCA 59.120 45.455 22.31 0.00 0.00 3.41
107 108 2.498167 AGCTTGACAACACTGATCCAC 58.502 47.619 0.00 0.00 0.00 4.02
108 109 2.105477 AGCTTGACAACACTGATCCACT 59.895 45.455 0.00 0.00 0.00 4.00
109 110 2.225019 GCTTGACAACACTGATCCACTG 59.775 50.000 0.00 0.00 0.00 3.66
110 111 3.732212 CTTGACAACACTGATCCACTGA 58.268 45.455 0.00 0.00 0.00 3.41
111 112 4.321718 CTTGACAACACTGATCCACTGAT 58.678 43.478 0.00 0.00 0.00 2.90
112 113 3.930336 TGACAACACTGATCCACTGATC 58.070 45.455 0.00 0.00 46.37 2.92
113 114 3.580022 TGACAACACTGATCCACTGATCT 59.420 43.478 4.39 0.00 46.34 2.75
114 115 3.931468 GACAACACTGATCCACTGATCTG 59.069 47.826 7.60 7.60 46.34 2.90
115 116 3.580022 ACAACACTGATCCACTGATCTGA 59.420 43.478 14.00 0.00 46.34 3.27
116 117 4.224594 ACAACACTGATCCACTGATCTGAT 59.775 41.667 14.00 0.00 46.34 2.90
117 118 4.403585 ACACTGATCCACTGATCTGATG 57.596 45.455 14.00 10.98 46.34 3.07
118 119 3.132160 CACTGATCCACTGATCTGATGC 58.868 50.000 14.00 0.00 46.34 3.91
119 120 2.223994 ACTGATCCACTGATCTGATGCG 60.224 50.000 14.00 0.00 46.34 4.73
120 121 2.034124 TGATCCACTGATCTGATGCGA 58.966 47.619 6.60 2.51 46.34 5.10
121 122 2.431782 TGATCCACTGATCTGATGCGAA 59.568 45.455 6.60 0.00 46.34 4.70
122 123 3.118665 TGATCCACTGATCTGATGCGAAA 60.119 43.478 6.60 0.00 46.34 3.46
123 124 3.548745 TCCACTGATCTGATGCGAAAT 57.451 42.857 6.60 0.00 0.00 2.17
124 125 3.461061 TCCACTGATCTGATGCGAAATC 58.539 45.455 6.60 0.00 0.00 2.17
125 126 2.220363 CCACTGATCTGATGCGAAATCG 59.780 50.000 6.60 0.00 43.27 3.34
126 127 2.220363 CACTGATCTGATGCGAAATCGG 59.780 50.000 6.60 0.00 40.23 4.18
127 128 1.194098 CTGATCTGATGCGAAATCGGC 59.806 52.381 4.84 0.00 40.23 5.54
128 129 1.202568 TGATCTGATGCGAAATCGGCT 60.203 47.619 4.84 0.00 40.23 5.52
129 130 1.194098 GATCTGATGCGAAATCGGCTG 59.806 52.381 4.84 0.00 40.23 4.85
130 131 0.175531 TCTGATGCGAAATCGGCTGA 59.824 50.000 0.00 0.00 40.23 4.26
131 132 0.302890 CTGATGCGAAATCGGCTGAC 59.697 55.000 0.00 0.00 40.23 3.51
132 133 0.390998 TGATGCGAAATCGGCTGACA 60.391 50.000 0.00 0.00 40.23 3.58
133 134 0.940126 GATGCGAAATCGGCTGACAT 59.060 50.000 0.00 0.00 40.23 3.06
134 135 2.135139 GATGCGAAATCGGCTGACATA 58.865 47.619 0.00 0.00 40.23 2.29
135 136 2.238942 TGCGAAATCGGCTGACATAT 57.761 45.000 0.00 0.00 40.23 1.78
136 137 2.135139 TGCGAAATCGGCTGACATATC 58.865 47.619 0.00 0.00 40.23 1.63
137 138 1.461127 GCGAAATCGGCTGACATATCC 59.539 52.381 0.00 0.00 40.23 2.59
138 139 2.868044 GCGAAATCGGCTGACATATCCT 60.868 50.000 0.00 0.00 40.23 3.24
139 140 2.733552 CGAAATCGGCTGACATATCCTG 59.266 50.000 0.00 0.00 35.37 3.86
140 141 3.552890 CGAAATCGGCTGACATATCCTGA 60.553 47.826 0.00 0.00 35.37 3.86
141 142 4.573900 GAAATCGGCTGACATATCCTGAT 58.426 43.478 0.00 0.00 0.00 2.90
142 143 3.606595 ATCGGCTGACATATCCTGATG 57.393 47.619 0.00 0.00 0.00 3.07
143 144 1.001293 TCGGCTGACATATCCTGATGC 59.999 52.381 0.00 0.00 0.00 3.91
144 145 1.270465 CGGCTGACATATCCTGATGCA 60.270 52.381 0.00 0.00 0.00 3.96
145 146 2.807837 CGGCTGACATATCCTGATGCAA 60.808 50.000 0.00 0.00 0.00 4.08
146 147 3.216800 GGCTGACATATCCTGATGCAAA 58.783 45.455 0.00 0.00 0.00 3.68
147 148 3.633525 GGCTGACATATCCTGATGCAAAA 59.366 43.478 0.00 0.00 0.00 2.44
148 149 4.280174 GGCTGACATATCCTGATGCAAAAT 59.720 41.667 0.00 0.00 0.00 1.82
149 150 5.221382 GGCTGACATATCCTGATGCAAAATT 60.221 40.000 0.00 0.00 0.00 1.82
150 151 6.278363 GCTGACATATCCTGATGCAAAATTT 58.722 36.000 0.00 0.00 0.00 1.82
151 152 6.200286 GCTGACATATCCTGATGCAAAATTTG 59.800 38.462 0.57 0.57 0.00 2.32
152 153 6.575267 TGACATATCCTGATGCAAAATTTGG 58.425 36.000 7.89 0.00 0.00 3.28
153 154 5.362263 ACATATCCTGATGCAAAATTTGGC 58.638 37.500 10.83 10.83 0.00 4.52
154 155 5.129815 ACATATCCTGATGCAAAATTTGGCT 59.870 36.000 18.26 4.33 0.00 4.75
155 156 3.322211 TCCTGATGCAAAATTTGGCTG 57.678 42.857 18.26 1.59 0.00 4.85
156 157 2.898612 TCCTGATGCAAAATTTGGCTGA 59.101 40.909 18.26 0.00 0.00 4.26
157 158 3.516300 TCCTGATGCAAAATTTGGCTGAT 59.484 39.130 18.26 4.66 0.00 2.90
158 159 4.710865 TCCTGATGCAAAATTTGGCTGATA 59.289 37.500 18.26 0.00 0.00 2.15
159 160 5.047847 CCTGATGCAAAATTTGGCTGATAG 58.952 41.667 18.26 10.74 0.00 2.08
160 161 5.163488 CCTGATGCAAAATTTGGCTGATAGA 60.163 40.000 18.26 0.00 0.00 1.98
161 162 6.462487 CCTGATGCAAAATTTGGCTGATAGAT 60.462 38.462 18.26 2.47 0.00 1.98
162 163 6.509656 TGATGCAAAATTTGGCTGATAGATC 58.490 36.000 18.26 11.64 0.00 2.75
163 164 5.266733 TGCAAAATTTGGCTGATAGATCC 57.733 39.130 18.26 0.00 0.00 3.36
164 165 4.710865 TGCAAAATTTGGCTGATAGATCCA 59.289 37.500 18.26 0.00 0.00 3.41
165 166 5.045872 GCAAAATTTGGCTGATAGATCCAC 58.954 41.667 10.47 0.00 0.00 4.02
166 167 5.594926 CAAAATTTGGCTGATAGATCCACC 58.405 41.667 0.00 0.00 0.00 4.61
167 168 4.803329 AATTTGGCTGATAGATCCACCT 57.197 40.909 0.00 0.00 0.00 4.00
168 169 5.912149 AATTTGGCTGATAGATCCACCTA 57.088 39.130 0.00 0.00 0.00 3.08
169 170 5.912149 ATTTGGCTGATAGATCCACCTAA 57.088 39.130 0.00 0.00 0.00 2.69
170 171 4.689612 TTGGCTGATAGATCCACCTAAC 57.310 45.455 0.00 0.00 0.00 2.34
171 172 3.928754 TGGCTGATAGATCCACCTAACT 58.071 45.455 0.00 0.00 0.00 2.24
172 173 3.643320 TGGCTGATAGATCCACCTAACTG 59.357 47.826 0.00 0.00 0.00 3.16
173 174 3.898123 GGCTGATAGATCCACCTAACTGA 59.102 47.826 0.00 0.00 0.00 3.41
174 175 4.530161 GGCTGATAGATCCACCTAACTGAT 59.470 45.833 0.00 0.00 0.00 2.90
175 176 5.477510 GCTGATAGATCCACCTAACTGATG 58.522 45.833 0.00 0.00 0.00 3.07
176 177 5.011533 GCTGATAGATCCACCTAACTGATGT 59.988 44.000 0.00 0.00 0.00 3.06
177 178 6.410942 TGATAGATCCACCTAACTGATGTG 57.589 41.667 0.00 0.00 0.00 3.21
178 179 6.136155 TGATAGATCCACCTAACTGATGTGA 58.864 40.000 0.00 0.00 31.66 3.58
179 180 6.611236 TGATAGATCCACCTAACTGATGTGAA 59.389 38.462 0.00 0.00 31.66 3.18
180 181 5.762179 AGATCCACCTAACTGATGTGAAA 57.238 39.130 0.00 0.00 31.66 2.69
181 182 6.319048 AGATCCACCTAACTGATGTGAAAT 57.681 37.500 0.00 0.00 31.66 2.17
182 183 6.352516 AGATCCACCTAACTGATGTGAAATC 58.647 40.000 0.00 0.00 31.66 2.17
183 184 5.762179 TCCACCTAACTGATGTGAAATCT 57.238 39.130 0.00 0.00 31.66 2.40
184 185 5.734720 TCCACCTAACTGATGTGAAATCTC 58.265 41.667 0.00 0.00 31.66 2.75
185 186 5.485353 TCCACCTAACTGATGTGAAATCTCT 59.515 40.000 0.00 0.00 31.66 3.10
186 187 5.583854 CCACCTAACTGATGTGAAATCTCTG 59.416 44.000 0.00 0.00 31.66 3.35
187 188 6.169094 CACCTAACTGATGTGAAATCTCTGT 58.831 40.000 0.00 0.00 31.66 3.41
188 189 6.652481 CACCTAACTGATGTGAAATCTCTGTT 59.348 38.462 0.00 0.00 35.87 3.16
189 190 6.876257 ACCTAACTGATGTGAAATCTCTGTTC 59.124 38.462 0.00 0.00 34.34 3.18
190 191 6.314896 CCTAACTGATGTGAAATCTCTGTTCC 59.685 42.308 0.00 0.00 34.34 3.62
191 192 5.495926 ACTGATGTGAAATCTCTGTTCCT 57.504 39.130 0.00 0.00 0.00 3.36
192 193 5.486526 ACTGATGTGAAATCTCTGTTCCTC 58.513 41.667 0.00 0.00 0.00 3.71
193 194 5.248020 ACTGATGTGAAATCTCTGTTCCTCT 59.752 40.000 0.00 0.00 0.00 3.69
194 195 5.485620 TGATGTGAAATCTCTGTTCCTCTG 58.514 41.667 0.00 0.00 0.00 3.35
195 196 4.277515 TGTGAAATCTCTGTTCCTCTGG 57.722 45.455 0.00 0.00 0.00 3.86
196 197 3.648067 TGTGAAATCTCTGTTCCTCTGGT 59.352 43.478 0.00 0.00 0.00 4.00
197 198 4.249661 GTGAAATCTCTGTTCCTCTGGTC 58.750 47.826 0.00 0.00 0.00 4.02
198 199 4.020662 GTGAAATCTCTGTTCCTCTGGTCT 60.021 45.833 0.00 0.00 0.00 3.85
199 200 4.221703 TGAAATCTCTGTTCCTCTGGTCTC 59.778 45.833 0.00 0.00 0.00 3.36
200 201 2.223803 TCTCTGTTCCTCTGGTCTCC 57.776 55.000 0.00 0.00 0.00 3.71
201 202 1.429299 TCTCTGTTCCTCTGGTCTCCA 59.571 52.381 0.00 0.00 0.00 3.86
211 212 3.765968 TGGTCTCCAGACACTAGCA 57.234 52.632 8.95 0.00 46.47 3.49
212 213 1.550327 TGGTCTCCAGACACTAGCAG 58.450 55.000 8.95 0.00 46.47 4.24
213 214 1.075536 TGGTCTCCAGACACTAGCAGA 59.924 52.381 8.95 0.00 46.47 4.26
214 215 1.474879 GGTCTCCAGACACTAGCAGAC 59.525 57.143 8.95 0.00 46.47 3.51
215 216 2.163509 GTCTCCAGACACTAGCAGACA 58.836 52.381 1.61 0.00 44.18 3.41
216 217 2.558795 GTCTCCAGACACTAGCAGACAA 59.441 50.000 1.61 0.00 44.18 3.18
217 218 2.822561 TCTCCAGACACTAGCAGACAAG 59.177 50.000 0.00 0.00 0.00 3.16
218 219 2.560542 CTCCAGACACTAGCAGACAAGT 59.439 50.000 0.00 0.00 0.00 3.16
219 220 3.759086 CTCCAGACACTAGCAGACAAGTA 59.241 47.826 0.00 0.00 0.00 2.24
220 221 4.344978 TCCAGACACTAGCAGACAAGTAT 58.655 43.478 0.00 0.00 0.00 2.12
221 222 4.158579 TCCAGACACTAGCAGACAAGTATG 59.841 45.833 0.00 0.00 0.00 2.39
222 223 4.081972 CCAGACACTAGCAGACAAGTATGT 60.082 45.833 0.00 0.00 44.25 2.29
233 234 3.851976 ACAAGTATGTCTCTCGTCCAC 57.148 47.619 0.00 0.00 33.41 4.02
234 235 3.154710 ACAAGTATGTCTCTCGTCCACA 58.845 45.455 0.00 0.00 33.41 4.17
235 236 3.764434 ACAAGTATGTCTCTCGTCCACAT 59.236 43.478 0.00 0.00 33.41 3.21
236 237 4.108336 CAAGTATGTCTCTCGTCCACATG 58.892 47.826 0.00 0.00 32.88 3.21
237 238 3.621558 AGTATGTCTCTCGTCCACATGA 58.378 45.455 0.00 0.00 32.88 3.07
238 239 4.017126 AGTATGTCTCTCGTCCACATGAA 58.983 43.478 0.00 0.00 32.88 2.57
239 240 2.724977 TGTCTCTCGTCCACATGAAC 57.275 50.000 0.00 0.00 0.00 3.18
240 241 1.960689 TGTCTCTCGTCCACATGAACA 59.039 47.619 0.00 0.00 0.00 3.18
241 242 2.288213 TGTCTCTCGTCCACATGAACAC 60.288 50.000 0.00 0.00 0.00 3.32
242 243 2.029828 GTCTCTCGTCCACATGAACACT 60.030 50.000 0.00 0.00 0.00 3.55
243 244 2.029918 TCTCTCGTCCACATGAACACTG 60.030 50.000 0.00 0.00 0.00 3.66
244 245 0.792640 CTCGTCCACATGAACACTGC 59.207 55.000 0.00 0.00 0.00 4.40
245 246 0.602638 TCGTCCACATGAACACTGCC 60.603 55.000 0.00 0.00 0.00 4.85
246 247 0.884259 CGTCCACATGAACACTGCCA 60.884 55.000 0.00 0.00 0.00 4.92
247 248 0.877071 GTCCACATGAACACTGCCAG 59.123 55.000 0.00 0.00 0.00 4.85
248 249 0.764271 TCCACATGAACACTGCCAGA 59.236 50.000 0.00 0.00 0.00 3.86
249 250 0.877071 CCACATGAACACTGCCAGAC 59.123 55.000 0.00 0.00 0.00 3.51
250 251 1.596603 CACATGAACACTGCCAGACA 58.403 50.000 0.00 0.00 0.00 3.41
261 262 3.680786 CCAGACAGTGGCCGTCGA 61.681 66.667 0.00 0.00 40.39 4.20
262 263 2.573869 CAGACAGTGGCCGTCGAT 59.426 61.111 0.00 0.00 38.46 3.59
263 264 1.079819 CAGACAGTGGCCGTCGATT 60.080 57.895 0.00 0.00 38.46 3.34
264 265 0.172578 CAGACAGTGGCCGTCGATTA 59.827 55.000 0.00 0.00 38.46 1.75
265 266 0.172803 AGACAGTGGCCGTCGATTAC 59.827 55.000 0.00 0.00 38.46 1.89
266 267 0.804933 GACAGTGGCCGTCGATTACC 60.805 60.000 0.00 0.00 0.00 2.85
267 268 1.255667 ACAGTGGCCGTCGATTACCT 61.256 55.000 0.00 0.00 0.00 3.08
268 269 0.527817 CAGTGGCCGTCGATTACCTC 60.528 60.000 0.00 0.00 0.00 3.85
269 270 1.227176 GTGGCCGTCGATTACCTCC 60.227 63.158 0.00 0.00 0.00 4.30
270 271 1.683025 TGGCCGTCGATTACCTCCA 60.683 57.895 0.00 0.00 0.00 3.86
271 272 1.259142 TGGCCGTCGATTACCTCCAA 61.259 55.000 0.00 0.00 0.00 3.53
272 273 0.808847 GGCCGTCGATTACCTCCAAC 60.809 60.000 0.00 0.00 0.00 3.77
273 274 0.175073 GCCGTCGATTACCTCCAACT 59.825 55.000 0.00 0.00 0.00 3.16
274 275 1.922570 CCGTCGATTACCTCCAACTG 58.077 55.000 0.00 0.00 0.00 3.16
275 276 1.278238 CGTCGATTACCTCCAACTGC 58.722 55.000 0.00 0.00 0.00 4.40
276 277 1.278238 GTCGATTACCTCCAACTGCG 58.722 55.000 0.00 0.00 0.00 5.18
277 278 0.459585 TCGATTACCTCCAACTGCGC 60.460 55.000 0.00 0.00 0.00 6.09
278 279 1.429148 CGATTACCTCCAACTGCGCC 61.429 60.000 4.18 0.00 0.00 6.53
279 280 1.077716 ATTACCTCCAACTGCGCCC 60.078 57.895 4.18 0.00 0.00 6.13
280 281 1.562672 ATTACCTCCAACTGCGCCCT 61.563 55.000 4.18 0.00 0.00 5.19
281 282 2.463589 TTACCTCCAACTGCGCCCTG 62.464 60.000 4.18 0.00 0.00 4.45
282 283 4.335647 CCTCCAACTGCGCCCTGT 62.336 66.667 4.18 0.00 0.00 4.00
283 284 2.743928 CTCCAACTGCGCCCTGTC 60.744 66.667 4.18 0.00 0.00 3.51
284 285 3.241530 TCCAACTGCGCCCTGTCT 61.242 61.111 4.18 0.00 0.00 3.41
285 286 2.743928 CCAACTGCGCCCTGTCTC 60.744 66.667 4.18 0.00 0.00 3.36
286 287 2.345244 CAACTGCGCCCTGTCTCT 59.655 61.111 4.18 0.00 0.00 3.10
287 288 1.591703 CAACTGCGCCCTGTCTCTA 59.408 57.895 4.18 0.00 0.00 2.43
288 289 0.459237 CAACTGCGCCCTGTCTCTAG 60.459 60.000 4.18 0.00 0.00 2.43
289 290 0.900647 AACTGCGCCCTGTCTCTAGT 60.901 55.000 4.18 0.00 0.00 2.57
290 291 1.140589 CTGCGCCCTGTCTCTAGTG 59.859 63.158 4.18 0.00 0.00 2.74
291 292 2.202810 GCGCCCTGTCTCTAGTGC 60.203 66.667 0.00 0.00 0.00 4.40
292 293 2.496817 CGCCCTGTCTCTAGTGCC 59.503 66.667 0.00 0.00 0.00 5.01
293 294 2.904131 GCCCTGTCTCTAGTGCCC 59.096 66.667 0.00 0.00 0.00 5.36
294 295 2.736826 GCCCTGTCTCTAGTGCCCC 61.737 68.421 0.00 0.00 0.00 5.80
295 296 1.306141 CCCTGTCTCTAGTGCCCCA 60.306 63.158 0.00 0.00 0.00 4.96
296 297 1.617947 CCCTGTCTCTAGTGCCCCAC 61.618 65.000 0.00 0.00 34.10 4.61
297 298 1.513158 CTGTCTCTAGTGCCCCACG 59.487 63.158 0.00 0.00 39.64 4.94
298 299 0.965866 CTGTCTCTAGTGCCCCACGA 60.966 60.000 0.00 0.00 39.64 4.35
299 300 0.324368 TGTCTCTAGTGCCCCACGAT 60.324 55.000 0.00 0.00 39.64 3.73
300 301 0.103208 GTCTCTAGTGCCCCACGATG 59.897 60.000 0.00 0.00 39.64 3.84
301 302 1.227380 CTCTAGTGCCCCACGATGC 60.227 63.158 0.00 0.00 39.64 3.91
302 303 1.960040 CTCTAGTGCCCCACGATGCA 61.960 60.000 0.00 0.00 39.64 3.96
303 304 1.522355 CTAGTGCCCCACGATGCAG 60.522 63.158 0.00 0.00 39.64 4.41
304 305 2.244117 CTAGTGCCCCACGATGCAGT 62.244 60.000 0.00 0.00 43.28 4.40
305 306 2.520465 TAGTGCCCCACGATGCAGTG 62.520 60.000 0.00 0.00 41.10 3.66
311 312 2.741985 CACGATGCAGTGGCGGAA 60.742 61.111 0.00 0.00 45.35 4.30
312 313 2.742372 ACGATGCAGTGGCGGAAC 60.742 61.111 0.00 0.00 45.35 3.62
313 314 3.499737 CGATGCAGTGGCGGAACC 61.500 66.667 0.00 0.00 45.35 3.62
322 323 2.434774 GGCGGAACCAAGGGTCTT 59.565 61.111 3.85 0.00 38.86 3.01
323 324 1.674651 GGCGGAACCAAGGGTCTTC 60.675 63.158 3.85 0.00 38.86 2.87
324 325 1.674651 GCGGAACCAAGGGTCTTCC 60.675 63.158 3.85 0.78 33.12 3.46
335 336 2.773458 GGTCTTCCCTGGACTTCCA 58.227 57.895 0.00 0.00 45.30 3.53
336 337 1.290134 GGTCTTCCCTGGACTTCCAT 58.710 55.000 0.00 0.00 46.46 3.41
337 338 1.065126 GGTCTTCCCTGGACTTCCATG 60.065 57.143 0.00 0.00 46.46 3.66
344 345 3.214696 CCTGGACTTCCATGGAATACC 57.785 52.381 27.20 28.03 46.46 2.73
359 360 6.855763 TGGAATACCAAAGAATTGCTGATT 57.144 33.333 0.00 0.00 43.91 2.57
360 361 6.866480 TGGAATACCAAAGAATTGCTGATTC 58.134 36.000 5.55 5.55 43.91 2.52
361 362 6.436847 TGGAATACCAAAGAATTGCTGATTCA 59.563 34.615 13.42 0.00 43.54 2.57
362 363 6.976925 GGAATACCAAAGAATTGCTGATTCAG 59.023 38.462 9.40 9.40 40.22 3.02
363 364 4.796038 ACCAAAGAATTGCTGATTCAGG 57.204 40.909 15.28 13.15 45.42 3.86
364 365 3.512724 ACCAAAGAATTGCTGATTCAGGG 59.487 43.478 15.28 6.97 45.42 4.45
365 366 3.118884 CCAAAGAATTGCTGATTCAGGGG 60.119 47.826 15.28 8.50 45.42 4.79
366 367 3.463048 AAGAATTGCTGATTCAGGGGT 57.537 42.857 15.28 0.00 45.42 4.95
367 368 3.010200 AGAATTGCTGATTCAGGGGTC 57.990 47.619 15.28 0.00 45.42 4.46
368 369 2.579860 AGAATTGCTGATTCAGGGGTCT 59.420 45.455 15.28 0.00 45.42 3.85
369 370 3.011032 AGAATTGCTGATTCAGGGGTCTT 59.989 43.478 15.28 0.00 45.42 3.01
370 371 2.496899 TTGCTGATTCAGGGGTCTTC 57.503 50.000 15.28 0.00 31.21 2.87
371 372 0.620556 TGCTGATTCAGGGGTCTTCC 59.379 55.000 15.28 0.00 31.21 3.46
386 387 5.500645 GGTCTTCCCTACATATTTGTTGC 57.499 43.478 0.00 0.00 37.28 4.17
387 388 4.338400 GGTCTTCCCTACATATTTGTTGCC 59.662 45.833 0.00 0.00 37.28 4.52
388 389 4.947388 GTCTTCCCTACATATTTGTTGCCA 59.053 41.667 0.00 0.00 37.28 4.92
389 390 5.594317 GTCTTCCCTACATATTTGTTGCCAT 59.406 40.000 0.00 0.00 37.28 4.40
390 391 6.770785 GTCTTCCCTACATATTTGTTGCCATA 59.229 38.462 0.00 0.00 37.28 2.74
391 392 7.448469 GTCTTCCCTACATATTTGTTGCCATAT 59.552 37.037 0.00 0.00 37.28 1.78
392 393 8.004215 TCTTCCCTACATATTTGTTGCCATATT 58.996 33.333 0.00 0.00 37.28 1.28
393 394 7.523293 TCCCTACATATTTGTTGCCATATTG 57.477 36.000 0.00 0.00 37.28 1.90
394 395 6.015519 TCCCTACATATTTGTTGCCATATTGC 60.016 38.462 0.00 0.00 37.28 3.56
395 396 6.015180 CCCTACATATTTGTTGCCATATTGCT 60.015 38.462 0.00 0.00 37.28 3.91
396 397 7.176515 CCCTACATATTTGTTGCCATATTGCTA 59.823 37.037 0.00 0.00 37.28 3.49
397 398 8.742777 CCTACATATTTGTTGCCATATTGCTAT 58.257 33.333 0.00 0.00 37.28 2.97
399 400 8.821147 ACATATTTGTTGCCATATTGCTATTG 57.179 30.769 0.00 0.00 29.55 1.90
400 401 8.423349 ACATATTTGTTGCCATATTGCTATTGT 58.577 29.630 0.00 0.00 29.55 2.71
401 402 9.911138 CATATTTGTTGCCATATTGCTATTGTA 57.089 29.630 0.00 0.00 0.00 2.41
404 405 8.645730 TTTGTTGCCATATTGCTATTGTATTG 57.354 30.769 0.00 0.00 0.00 1.90
405 406 6.215121 TGTTGCCATATTGCTATTGTATTGC 58.785 36.000 0.00 0.00 0.00 3.56
406 407 6.183360 TGTTGCCATATTGCTATTGTATTGCA 60.183 34.615 0.00 0.00 39.16 4.08
407 408 5.771469 TGCCATATTGCTATTGTATTGCAC 58.229 37.500 0.00 0.00 40.53 4.57
408 409 5.301298 TGCCATATTGCTATTGTATTGCACA 59.699 36.000 0.00 0.00 40.53 4.57
422 423 6.098679 TGTATTGCACAAATGAATACCAAGC 58.901 36.000 0.00 0.00 32.99 4.01
423 424 4.597404 TTGCACAAATGAATACCAAGCA 57.403 36.364 0.00 0.00 0.00 3.91
424 425 4.597404 TGCACAAATGAATACCAAGCAA 57.403 36.364 0.00 0.00 0.00 3.91
425 426 4.558178 TGCACAAATGAATACCAAGCAAG 58.442 39.130 0.00 0.00 0.00 4.01
426 427 4.280425 TGCACAAATGAATACCAAGCAAGA 59.720 37.500 0.00 0.00 0.00 3.02
427 428 5.221402 TGCACAAATGAATACCAAGCAAGAA 60.221 36.000 0.00 0.00 0.00 2.52
428 429 5.695816 GCACAAATGAATACCAAGCAAGAAA 59.304 36.000 0.00 0.00 0.00 2.52
429 430 6.369615 GCACAAATGAATACCAAGCAAGAAAT 59.630 34.615 0.00 0.00 0.00 2.17
430 431 7.095102 GCACAAATGAATACCAAGCAAGAAATT 60.095 33.333 0.00 0.00 0.00 1.82
431 432 8.437742 CACAAATGAATACCAAGCAAGAAATTC 58.562 33.333 0.00 0.00 0.00 2.17
432 433 7.603784 ACAAATGAATACCAAGCAAGAAATTCC 59.396 33.333 0.00 0.00 0.00 3.01
433 434 7.486407 AATGAATACCAAGCAAGAAATTCCT 57.514 32.000 0.00 0.00 0.00 3.36
434 435 6.271488 TGAATACCAAGCAAGAAATTCCTG 57.729 37.500 0.00 0.00 0.00 3.86
435 436 5.185635 TGAATACCAAGCAAGAAATTCCTGG 59.814 40.000 0.00 0.00 0.00 4.45
436 437 1.620323 ACCAAGCAAGAAATTCCTGGC 59.380 47.619 0.00 0.00 33.28 4.85
437 438 1.897802 CCAAGCAAGAAATTCCTGGCT 59.102 47.619 0.00 0.00 44.97 4.75
438 439 2.094338 CCAAGCAAGAAATTCCTGGCTC 60.094 50.000 0.00 0.00 42.37 4.70
439 440 1.844687 AGCAAGAAATTCCTGGCTCC 58.155 50.000 0.00 0.00 39.11 4.70
440 441 0.453390 GCAAGAAATTCCTGGCTCCG 59.547 55.000 0.00 0.00 30.47 4.63
441 442 0.453390 CAAGAAATTCCTGGCTCCGC 59.547 55.000 0.00 0.00 0.00 5.54
457 458 2.874780 GCCACTGCTACGACGACG 60.875 66.667 5.58 5.58 38.96 5.12
458 459 2.865308 CCACTGCTACGACGACGA 59.135 61.111 15.32 0.00 42.66 4.20
459 460 1.511464 CCACTGCTACGACGACGAC 60.511 63.158 15.32 3.64 42.66 4.34
471 472 2.434359 GACGACCCAAGAAGGCCG 60.434 66.667 0.00 0.00 37.75 6.13
474 475 4.344865 GACCCAAGAAGGCCGCCA 62.345 66.667 13.15 0.00 35.39 5.69
492 493 1.882623 CCACCTTGAAGAAGCAGAACC 59.117 52.381 0.00 0.00 0.00 3.62
494 495 1.160137 CCTTGAAGAAGCAGAACCCG 58.840 55.000 0.00 0.00 0.00 5.28
497 498 1.048601 TGAAGAAGCAGAACCCGAGT 58.951 50.000 0.00 0.00 0.00 4.18
555 559 4.223923 AGAAGATCTCGAAACCCTTCACAT 59.776 41.667 14.66 0.00 36.59 3.21
569 573 1.288188 TCACATCCTTCTCCATGGCA 58.712 50.000 6.96 0.00 0.00 4.92
573 577 3.567164 CACATCCTTCTCCATGGCATAAC 59.433 47.826 6.96 0.00 0.00 1.89
658 671 4.178861 GTGCAACTATGGACGCGA 57.821 55.556 15.93 0.00 38.17 5.87
683 696 0.894835 TCGATGTAGGAACAGCAGCA 59.105 50.000 0.00 0.00 42.24 4.41
684 697 1.275010 TCGATGTAGGAACAGCAGCAA 59.725 47.619 0.00 0.00 42.24 3.91
685 698 1.662629 CGATGTAGGAACAGCAGCAAG 59.337 52.381 0.00 0.00 42.24 4.01
718 731 4.504916 CTCGCGGCTGGGTGAGAG 62.505 72.222 6.13 0.00 45.22 3.20
741 754 2.621486 GGGTGCTCTATGTTCCCCT 58.379 57.895 0.00 0.00 32.66 4.79
746 759 2.027192 GTGCTCTATGTTCCCCTGTTCA 60.027 50.000 0.00 0.00 0.00 3.18
752 765 2.112297 TTCCCCTGTTCACGTGGC 59.888 61.111 17.00 9.81 0.00 5.01
789 805 0.733223 GGTCGCTCGAAGTTGAGGTC 60.733 60.000 0.00 0.00 36.47 3.85
812 828 2.960819 AGAGAACGTGCGCTAAGATTT 58.039 42.857 9.73 0.00 0.00 2.17
830 846 1.395045 TTGTGCGCCCAAATCCAACA 61.395 50.000 1.77 0.00 0.00 3.33
838 854 1.180029 CCAAATCCAACAGCTCCAGG 58.820 55.000 0.00 0.00 0.00 4.45
839 855 1.548582 CCAAATCCAACAGCTCCAGGT 60.549 52.381 0.00 0.00 0.00 4.00
840 856 1.815003 CAAATCCAACAGCTCCAGGTC 59.185 52.381 0.00 0.00 0.00 3.85
875 891 2.433491 TTCCCATGAACGTCCGCG 60.433 61.111 0.00 0.00 44.93 6.46
893 909 3.968096 CCGCGCAATAACATTTGTGATAG 59.032 43.478 8.75 0.00 39.00 2.08
894 910 4.495679 CCGCGCAATAACATTTGTGATAGT 60.496 41.667 8.75 0.00 39.00 2.12
895 911 5.277106 CCGCGCAATAACATTTGTGATAGTA 60.277 40.000 8.75 0.00 39.00 1.82
896 912 5.840781 CGCGCAATAACATTTGTGATAGTAG 59.159 40.000 8.75 0.00 39.00 2.57
897 913 6.509517 CGCGCAATAACATTTGTGATAGTAGT 60.510 38.462 8.75 0.00 39.00 2.73
994 1029 4.394712 CCGCCGCCTCTCCAAACT 62.395 66.667 0.00 0.00 0.00 2.66
1287 1322 0.905357 ACGGCAAGGTATCTGAGCTT 59.095 50.000 0.00 0.00 46.97 3.74
1291 1326 2.433970 GGCAAGGTATCTGAGCTTCTCT 59.566 50.000 0.00 0.00 44.16 3.10
1346 1382 6.146837 GTGCAATAGTATCTTGATAGCTGGTG 59.853 42.308 0.00 0.00 0.00 4.17
1360 1396 0.107993 CTGGTGGCATCATCGTCAGT 60.108 55.000 0.00 0.00 0.00 3.41
1362 1398 0.108186 GGTGGCATCATCGTCAGTGA 60.108 55.000 0.00 0.00 0.00 3.41
1390 1426 7.335924 GCATAGGTTACAGTTTTGTTCATAGGA 59.664 37.037 0.00 0.00 38.76 2.94
1408 1444 0.316360 GATCCGAGTCTCGAGTTCGC 60.316 60.000 23.74 15.98 43.74 4.70
1492 1528 2.656947 TGGTCCAAAGTTCAGGAAGG 57.343 50.000 0.00 0.00 35.29 3.46
1506 1542 1.981495 AGGAAGGCAGCTAGTTTGAGT 59.019 47.619 0.00 0.00 0.00 3.41
1518 1555 5.180868 AGCTAGTTTGAGTTTCTGCTCATTG 59.819 40.000 0.00 0.00 43.99 2.82
1524 1561 7.650903 AGTTTGAGTTTCTGCTCATTGAAATTC 59.349 33.333 0.00 0.00 43.99 2.17
1539 1576 3.243035 TGAAATTCGAGCTGTGTGTTTGG 60.243 43.478 0.00 0.00 0.00 3.28
1554 1591 3.133183 GTGTTTGGTTGGTTGGGTTGTAT 59.867 43.478 0.00 0.00 0.00 2.29
1555 1592 4.341520 GTGTTTGGTTGGTTGGGTTGTATA 59.658 41.667 0.00 0.00 0.00 1.47
1556 1593 5.011227 GTGTTTGGTTGGTTGGGTTGTATAT 59.989 40.000 0.00 0.00 0.00 0.86
1557 1594 5.602978 TGTTTGGTTGGTTGGGTTGTATATT 59.397 36.000 0.00 0.00 0.00 1.28
1568 1605 7.417342 GGTTGGGTTGTATATTATTGCACATGT 60.417 37.037 0.00 0.00 0.00 3.21
1589 1626 2.089980 GCAATGAGTTCCATGAGTGCT 58.910 47.619 0.00 0.00 35.00 4.40
1594 1658 3.867600 ATGAGTTCCATGAGTGCTGACAC 60.868 47.826 0.00 0.00 39.57 3.67
1602 1666 4.379174 GTGCTGACACGGGTTCAT 57.621 55.556 0.00 0.00 36.98 2.57
1603 1667 2.162716 GTGCTGACACGGGTTCATC 58.837 57.895 0.00 0.00 36.98 2.92
1604 1668 1.374125 TGCTGACACGGGTTCATCG 60.374 57.895 0.00 0.00 0.00 3.84
1605 1669 2.740714 GCTGACACGGGTTCATCGC 61.741 63.158 0.00 0.00 0.00 4.58
1611 1675 2.791256 CGGGTTCATCGCGCAAAT 59.209 55.556 8.75 0.00 44.64 2.32
1612 1676 1.136565 CGGGTTCATCGCGCAAATT 59.863 52.632 8.75 0.00 44.64 1.82
1613 1677 0.375454 CGGGTTCATCGCGCAAATTA 59.625 50.000 8.75 0.00 44.64 1.40
1614 1678 1.594518 CGGGTTCATCGCGCAAATTAG 60.595 52.381 8.75 0.00 44.64 1.73
1615 1679 1.268539 GGGTTCATCGCGCAAATTAGG 60.269 52.381 8.75 0.00 0.00 2.69
1616 1680 1.668751 GGTTCATCGCGCAAATTAGGA 59.331 47.619 8.75 0.00 0.00 2.94
1617 1681 2.538939 GGTTCATCGCGCAAATTAGGAC 60.539 50.000 8.75 0.00 0.00 3.85
1618 1682 0.927537 TCATCGCGCAAATTAGGACG 59.072 50.000 8.75 0.00 0.00 4.79
1619 1683 0.042188 CATCGCGCAAATTAGGACGG 60.042 55.000 8.75 0.00 0.00 4.79
1620 1684 0.179094 ATCGCGCAAATTAGGACGGA 60.179 50.000 8.75 0.00 0.00 4.69
1630 1694 5.675323 GCAAATTAGGACGGAATGGTTGTAC 60.675 44.000 0.00 0.00 0.00 2.90
1638 1702 2.551287 CGGAATGGTTGTACAACTCCCA 60.551 50.000 31.82 24.07 40.94 4.37
1678 1743 4.636206 GGCTTAGTCACACATTTAGGAAGG 59.364 45.833 0.00 0.00 0.00 3.46
1683 1748 3.437049 GTCACACATTTAGGAAGGCAGTC 59.563 47.826 0.00 0.00 0.00 3.51
1694 1762 3.138468 AGGAAGGCAGTCAGGTTTAGTTT 59.862 43.478 0.00 0.00 0.00 2.66
1696 1764 3.857157 AGGCAGTCAGGTTTAGTTTCA 57.143 42.857 0.00 0.00 0.00 2.69
1700 1768 4.315803 GCAGTCAGGTTTAGTTTCAGCTA 58.684 43.478 0.00 0.00 0.00 3.32
1713 1781 5.793026 GTTTCAGCTAGATGGAAACTGAG 57.207 43.478 19.67 0.00 44.22 3.35
1732 1800 5.000012 TGAGCGTGTTTTATTTTGGTTGT 58.000 34.783 0.00 0.00 0.00 3.32
1835 1908 3.199727 CCCCAAAATGAAATTACCCCCAG 59.800 47.826 0.00 0.00 33.67 4.45
1864 1976 0.824109 GGCCTTGGTTTGATTAGCCC 59.176 55.000 0.00 0.00 32.68 5.19
1869 1981 3.759618 CCTTGGTTTGATTAGCCCGTTAA 59.240 43.478 0.00 0.00 0.00 2.01
1880 1992 1.906574 AGCCCGTTAATCTCCTTGTGA 59.093 47.619 0.00 0.00 0.00 3.58
1890 2002 1.070758 TCTCCTTGTGACAACCTGCTC 59.929 52.381 0.00 0.00 0.00 4.26
1898 2010 4.633175 TGTGACAACCTGCTCGTTATTAA 58.367 39.130 0.00 0.00 0.00 1.40
1899 2011 4.688879 TGTGACAACCTGCTCGTTATTAAG 59.311 41.667 0.00 0.00 0.00 1.85
1921 2112 9.529325 TTAAGCAGCTGTTATGTACTACTATTG 57.471 33.333 16.64 0.00 0.00 1.90
1924 2115 8.258007 AGCAGCTGTTATGTACTACTATTGAAA 58.742 33.333 16.64 0.00 0.00 2.69
1925 2116 9.046296 GCAGCTGTTATGTACTACTATTGAAAT 57.954 33.333 16.64 0.00 0.00 2.17
1998 2189 8.954950 AATCTGATAGTTCCTAACTCAATGTG 57.045 34.615 0.00 0.00 41.77 3.21
2073 2264 2.430465 GCTGTGAAGCTCCTCAAATCA 58.570 47.619 0.00 0.00 0.00 2.57
2074 2265 3.015327 GCTGTGAAGCTCCTCAAATCAT 58.985 45.455 0.00 0.00 0.00 2.45
2077 2268 3.760151 TGTGAAGCTCCTCAAATCATTGG 59.240 43.478 0.00 0.00 37.15 3.16
2085 2276 4.780815 TCCTCAAATCATTGGTATCGCTT 58.219 39.130 0.00 0.00 37.15 4.68
2091 2282 6.039159 TCAAATCATTGGTATCGCTTATGCAA 59.961 34.615 0.00 0.00 36.73 4.08
2112 2303 7.683578 TGCAATCTAGGTATGATAATGCTTCT 58.316 34.615 0.00 0.00 32.18 2.85
2113 2304 8.815912 TGCAATCTAGGTATGATAATGCTTCTA 58.184 33.333 0.00 0.00 32.18 2.10
2118 2309 9.026121 TCTAGGTATGATAATGCTTCTAAGGTC 57.974 37.037 0.00 0.00 0.00 3.85
2123 2314 6.814954 TGATAATGCTTCTAAGGTCCTCTT 57.185 37.500 0.00 0.00 39.40 2.85
2124 2315 7.200434 TGATAATGCTTCTAAGGTCCTCTTT 57.800 36.000 0.00 0.00 36.93 2.52
2135 2326 5.966742 AAGGTCCTCTTTCAATTTAGCAC 57.033 39.130 0.00 0.00 29.99 4.40
2136 2327 5.248380 AGGTCCTCTTTCAATTTAGCACT 57.752 39.130 0.00 0.00 0.00 4.40
2141 2332 8.523658 GGTCCTCTTTCAATTTAGCACTAAAAT 58.476 33.333 6.92 0.00 38.38 1.82
2151 2342 0.451783 GCACTAAAATGGCTGGGACG 59.548 55.000 0.00 0.00 0.00 4.79
2158 2349 2.507407 AATGGCTGGGACGTTATGTT 57.493 45.000 0.00 0.00 0.00 2.71
2164 2355 0.249953 TGGGACGTTATGTTGCGTGT 60.250 50.000 0.00 0.00 41.70 4.49
2213 2404 6.806120 ATTCAGTTAAACTTTTGCGTTGAC 57.194 33.333 0.00 0.00 0.00 3.18
2325 2520 1.673920 TCTGCTTTTCGTTTTCGCCTT 59.326 42.857 0.00 0.00 43.73 4.35
2340 2535 2.074967 CCTTGGCAGGGGTTCAGTA 58.925 57.895 7.96 0.00 36.36 2.74
2400 2595 2.223805 CCGACACATGAGCAGCATAGTA 60.224 50.000 0.00 0.00 34.82 1.82
2543 2738 3.496884 ACTGTAATGTTACTTGGTGCACG 59.503 43.478 11.45 0.00 34.77 5.34
2545 2740 1.313772 AATGTTACTTGGTGCACGCA 58.686 45.000 11.45 7.36 0.00 5.24
2603 2798 1.068748 TCGTCGCTCAAACTGTCTACC 60.069 52.381 0.00 0.00 0.00 3.18
2651 2849 2.380590 AGGTTCTCTCCTGTCTACCTGT 59.619 50.000 0.00 0.00 36.35 4.00
2694 2902 6.197655 GCATGTGTGTAATTCAAGCATGTATG 59.802 38.462 0.00 0.00 39.88 2.39
2786 2994 6.864151 TTCTGATGAGGAAGATTCTGAAGA 57.136 37.500 0.00 0.00 0.00 2.87
2847 3055 0.450983 AAGATTCCGAGGTCGACGAC 59.549 55.000 19.70 19.70 43.02 4.34
2933 3141 4.903054 AGATCACAGCATTTGAACTCTGA 58.097 39.130 0.00 0.00 0.00 3.27
2936 3144 6.433404 AGATCACAGCATTTGAACTCTGATTT 59.567 34.615 0.00 0.00 0.00 2.17
2952 3160 9.915629 AACTCTGATTTTCTAGTAACTGTACTG 57.084 33.333 0.00 0.00 40.89 2.74
2953 3161 9.080097 ACTCTGATTTTCTAGTAACTGTACTGT 57.920 33.333 0.00 0.00 40.89 3.55
2962 3170 8.194433 TCTAGTAACTGTACTGTAACTGATCG 57.806 38.462 5.76 0.00 40.89 3.69
2963 3171 8.037166 TCTAGTAACTGTACTGTAACTGATCGA 58.963 37.037 5.76 0.00 40.89 3.59
2964 3172 7.074507 AGTAACTGTACTGTAACTGATCGAG 57.925 40.000 5.76 0.00 39.20 4.04
2965 3173 6.877855 AGTAACTGTACTGTAACTGATCGAGA 59.122 38.462 5.76 0.00 39.20 4.04
2966 3174 5.548706 ACTGTACTGTAACTGATCGAGAC 57.451 43.478 3.21 0.00 0.00 3.36
2967 3175 5.001874 ACTGTACTGTAACTGATCGAGACA 58.998 41.667 3.21 0.00 0.00 3.41
2968 3176 5.106634 ACTGTACTGTAACTGATCGAGACAC 60.107 44.000 3.21 0.00 0.00 3.67
2969 3177 4.758165 TGTACTGTAACTGATCGAGACACA 59.242 41.667 0.00 2.91 0.00 3.72
3054 3270 8.831715 AAATCCTCAAATTTGTGTTGGTTATC 57.168 30.769 17.47 0.00 0.00 1.75
3069 3285 8.562892 GTGTTGGTTATCATATCAGGAATCAAG 58.437 37.037 0.00 0.00 0.00 3.02
3070 3286 8.493607 TGTTGGTTATCATATCAGGAATCAAGA 58.506 33.333 0.00 0.00 0.00 3.02
3071 3287 8.778358 GTTGGTTATCATATCAGGAATCAAGAC 58.222 37.037 0.00 0.00 0.00 3.01
3120 3336 7.337436 TGCTTTGTGATAACAGATTCATCATCA 59.663 33.333 0.00 0.00 33.75 3.07
3139 3355 7.071069 TCATCAGTCAGTTTAGATGGCATAT 57.929 36.000 0.00 0.00 38.64 1.78
3269 3486 6.244654 TCATGAGGTACACAAATTCCATCAA 58.755 36.000 0.00 0.00 29.57 2.57
3323 3540 4.094590 CAGAAACAGCCTGCTGAATTCTAG 59.905 45.833 27.60 21.56 46.30 2.43
3327 3544 3.198635 ACAGCCTGCTGAATTCTAGCTAA 59.801 43.478 24.88 9.23 46.30 3.09
3376 3594 6.107343 CGAAAACCCAAGTAAAAAGGGAAAA 58.893 36.000 3.32 0.00 45.80 2.29
3377 3595 6.256975 CGAAAACCCAAGTAAAAAGGGAAAAG 59.743 38.462 3.32 0.00 45.80 2.27
3382 3600 5.010719 CCCAAGTAAAAAGGGAAAAGACTCC 59.989 44.000 0.00 0.00 45.80 3.85
3394 3612 4.887655 GGAAAAGACTCCTGTTTCCTGAAA 59.112 41.667 8.54 0.00 44.57 2.69
3470 3688 6.814644 TCTCCACACGTATATTTTTCACGAAT 59.185 34.615 2.14 0.00 38.96 3.34
3495 3723 3.118738 ACATTCTCCACCGGTATCACTTC 60.119 47.826 6.87 0.00 0.00 3.01
3529 3759 6.035005 CAGAACGATCGAGTTTTCATACACAT 59.965 38.462 24.34 0.00 34.00 3.21
3530 3760 7.220108 CAGAACGATCGAGTTTTCATACACATA 59.780 37.037 24.34 0.00 34.00 2.29
3546 3776 8.768397 TCATACACATAAACCACTAGATCCTTT 58.232 33.333 0.00 0.00 0.00 3.11
3582 3812 5.122239 GCCAAAAATTAGGAAGAAACATGCC 59.878 40.000 0.00 0.00 0.00 4.40
3625 3855 1.299773 CGTTTGTGGCGGCATGTTT 60.300 52.632 17.19 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.419297 GAATACTGAATAAATATAGCGTGGTGA 57.581 33.333 0.00 0.00 0.00 4.02
1 2 8.373256 CGAATACTGAATAAATATAGCGTGGTG 58.627 37.037 0.00 0.00 0.00 4.17
2 3 8.086522 ACGAATACTGAATAAATATAGCGTGGT 58.913 33.333 0.00 0.00 0.00 4.16
3 4 8.462143 ACGAATACTGAATAAATATAGCGTGG 57.538 34.615 0.00 0.00 0.00 4.94
13 14 9.321562 GTCCTTGGATAACGAATACTGAATAAA 57.678 33.333 0.00 0.00 0.00 1.40
14 15 8.479689 TGTCCTTGGATAACGAATACTGAATAA 58.520 33.333 0.00 0.00 0.00 1.40
15 16 8.014070 TGTCCTTGGATAACGAATACTGAATA 57.986 34.615 0.00 0.00 0.00 1.75
16 17 6.884832 TGTCCTTGGATAACGAATACTGAAT 58.115 36.000 0.00 0.00 0.00 2.57
17 18 6.288941 TGTCCTTGGATAACGAATACTGAA 57.711 37.500 0.00 0.00 0.00 3.02
18 19 5.925506 TGTCCTTGGATAACGAATACTGA 57.074 39.130 0.00 0.00 0.00 3.41
19 20 6.456988 GCTTTGTCCTTGGATAACGAATACTG 60.457 42.308 6.78 0.00 0.00 2.74
20 21 5.585047 GCTTTGTCCTTGGATAACGAATACT 59.415 40.000 6.78 0.00 0.00 2.12
21 22 5.353123 TGCTTTGTCCTTGGATAACGAATAC 59.647 40.000 6.78 0.00 0.00 1.89
22 23 5.353123 GTGCTTTGTCCTTGGATAACGAATA 59.647 40.000 6.78 0.00 0.00 1.75
23 24 4.156008 GTGCTTTGTCCTTGGATAACGAAT 59.844 41.667 6.78 0.00 0.00 3.34
24 25 3.500680 GTGCTTTGTCCTTGGATAACGAA 59.499 43.478 6.78 0.00 0.00 3.85
25 26 3.071479 GTGCTTTGTCCTTGGATAACGA 58.929 45.455 6.78 0.00 0.00 3.85
26 27 3.074412 AGTGCTTTGTCCTTGGATAACG 58.926 45.455 0.00 0.00 0.00 3.18
27 28 3.125316 CGAGTGCTTTGTCCTTGGATAAC 59.875 47.826 0.00 0.00 0.00 1.89
28 29 3.334691 CGAGTGCTTTGTCCTTGGATAA 58.665 45.455 0.00 0.00 0.00 1.75
29 30 2.935238 GCGAGTGCTTTGTCCTTGGATA 60.935 50.000 0.00 0.00 38.39 2.59
30 31 1.813513 CGAGTGCTTTGTCCTTGGAT 58.186 50.000 0.00 0.00 0.00 3.41
31 32 0.884704 GCGAGTGCTTTGTCCTTGGA 60.885 55.000 0.00 0.00 38.39 3.53
32 33 1.576421 GCGAGTGCTTTGTCCTTGG 59.424 57.895 0.00 0.00 38.39 3.61
43 44 0.579156 GCAAGTAGCATAGCGAGTGC 59.421 55.000 3.28 3.28 44.79 4.40
54 55 7.749126 ACGATTTTATTTGTAGTTGCAAGTAGC 59.251 33.333 14.34 9.87 45.96 3.58
55 56 9.262472 GACGATTTTATTTGTAGTTGCAAGTAG 57.738 33.333 14.34 1.33 0.00 2.57
56 57 8.231837 GGACGATTTTATTTGTAGTTGCAAGTA 58.768 33.333 10.00 10.00 0.00 2.24
57 58 7.081976 GGACGATTTTATTTGTAGTTGCAAGT 58.918 34.615 12.28 12.28 0.00 3.16
58 59 7.060633 GTGGACGATTTTATTTGTAGTTGCAAG 59.939 37.037 0.00 0.00 0.00 4.01
59 60 6.858993 GTGGACGATTTTATTTGTAGTTGCAA 59.141 34.615 0.00 0.00 0.00 4.08
60 61 6.375377 GTGGACGATTTTATTTGTAGTTGCA 58.625 36.000 0.00 0.00 0.00 4.08
61 62 5.798434 GGTGGACGATTTTATTTGTAGTTGC 59.202 40.000 0.00 0.00 0.00 4.17
62 63 6.904498 TGGTGGACGATTTTATTTGTAGTTG 58.096 36.000 0.00 0.00 0.00 3.16
63 64 7.513371 TTGGTGGACGATTTTATTTGTAGTT 57.487 32.000 0.00 0.00 0.00 2.24
64 65 6.349033 GCTTGGTGGACGATTTTATTTGTAGT 60.349 38.462 0.00 0.00 0.00 2.73
65 66 6.027749 GCTTGGTGGACGATTTTATTTGTAG 58.972 40.000 0.00 0.00 0.00 2.74
66 67 5.708230 AGCTTGGTGGACGATTTTATTTGTA 59.292 36.000 0.00 0.00 0.00 2.41
67 68 4.522789 AGCTTGGTGGACGATTTTATTTGT 59.477 37.500 0.00 0.00 0.00 2.83
68 69 5.059404 AGCTTGGTGGACGATTTTATTTG 57.941 39.130 0.00 0.00 0.00 2.32
69 70 5.242838 TCAAGCTTGGTGGACGATTTTATTT 59.757 36.000 25.73 0.00 0.00 1.40
70 71 4.764823 TCAAGCTTGGTGGACGATTTTATT 59.235 37.500 25.73 0.00 0.00 1.40
71 72 4.156008 GTCAAGCTTGGTGGACGATTTTAT 59.844 41.667 25.73 0.00 0.00 1.40
72 73 3.500680 GTCAAGCTTGGTGGACGATTTTA 59.499 43.478 25.73 0.00 0.00 1.52
73 74 2.293399 GTCAAGCTTGGTGGACGATTTT 59.707 45.455 25.73 0.00 0.00 1.82
74 75 1.880027 GTCAAGCTTGGTGGACGATTT 59.120 47.619 25.73 0.00 0.00 2.17
75 76 1.202758 TGTCAAGCTTGGTGGACGATT 60.203 47.619 25.73 0.00 33.04 3.34
76 77 0.396435 TGTCAAGCTTGGTGGACGAT 59.604 50.000 25.73 0.00 33.04 3.73
77 78 0.179234 TTGTCAAGCTTGGTGGACGA 59.821 50.000 25.73 13.46 33.04 4.20
78 79 0.307760 GTTGTCAAGCTTGGTGGACG 59.692 55.000 25.73 0.00 33.04 4.79
79 80 1.065551 GTGTTGTCAAGCTTGGTGGAC 59.934 52.381 25.73 16.58 0.00 4.02
80 81 1.064758 AGTGTTGTCAAGCTTGGTGGA 60.065 47.619 25.73 3.88 0.00 4.02
81 82 1.066002 CAGTGTTGTCAAGCTTGGTGG 59.934 52.381 25.73 0.38 0.00 4.61
82 83 2.016318 TCAGTGTTGTCAAGCTTGGTG 58.984 47.619 25.73 11.77 0.00 4.17
83 84 2.418368 TCAGTGTTGTCAAGCTTGGT 57.582 45.000 25.73 0.25 0.00 3.67
84 85 2.227388 GGATCAGTGTTGTCAAGCTTGG 59.773 50.000 25.73 7.62 0.00 3.61
85 86 2.880268 TGGATCAGTGTTGTCAAGCTTG 59.120 45.455 20.81 20.81 0.00 4.01
86 87 2.880890 GTGGATCAGTGTTGTCAAGCTT 59.119 45.455 0.00 0.00 0.00 3.74
87 88 2.105477 AGTGGATCAGTGTTGTCAAGCT 59.895 45.455 0.00 0.00 0.00 3.74
88 89 2.225019 CAGTGGATCAGTGTTGTCAAGC 59.775 50.000 0.00 0.00 30.89 4.01
89 90 3.732212 TCAGTGGATCAGTGTTGTCAAG 58.268 45.455 0.00 0.00 36.33 3.02
90 91 3.836365 TCAGTGGATCAGTGTTGTCAA 57.164 42.857 0.00 0.00 36.33 3.18
102 103 3.548745 TTTCGCATCAGATCAGTGGAT 57.451 42.857 0.00 0.00 36.13 3.41
103 104 3.461061 GATTTCGCATCAGATCAGTGGA 58.539 45.455 0.00 0.00 0.00 4.02
104 105 2.220363 CGATTTCGCATCAGATCAGTGG 59.780 50.000 0.00 0.00 0.00 4.00
105 106 2.220363 CCGATTTCGCATCAGATCAGTG 59.780 50.000 0.00 0.00 38.18 3.66
106 107 2.477825 CCGATTTCGCATCAGATCAGT 58.522 47.619 0.00 0.00 38.18 3.41
107 108 1.194098 GCCGATTTCGCATCAGATCAG 59.806 52.381 0.00 0.00 38.18 2.90
108 109 1.202568 AGCCGATTTCGCATCAGATCA 60.203 47.619 0.00 0.00 38.18 2.92
109 110 1.194098 CAGCCGATTTCGCATCAGATC 59.806 52.381 0.00 0.00 38.18 2.75
110 111 1.202568 TCAGCCGATTTCGCATCAGAT 60.203 47.619 0.00 0.00 38.18 2.90
111 112 0.175531 TCAGCCGATTTCGCATCAGA 59.824 50.000 0.00 0.00 38.18 3.27
112 113 0.302890 GTCAGCCGATTTCGCATCAG 59.697 55.000 0.00 0.00 38.18 2.90
113 114 0.390998 TGTCAGCCGATTTCGCATCA 60.391 50.000 0.00 0.00 38.18 3.07
114 115 0.940126 ATGTCAGCCGATTTCGCATC 59.060 50.000 0.00 0.00 38.18 3.91
115 116 2.238942 TATGTCAGCCGATTTCGCAT 57.761 45.000 0.00 0.00 38.18 4.73
116 117 2.135139 GATATGTCAGCCGATTTCGCA 58.865 47.619 0.00 0.00 38.18 5.10
117 118 1.461127 GGATATGTCAGCCGATTTCGC 59.539 52.381 0.00 0.00 38.18 4.70
118 119 2.733552 CAGGATATGTCAGCCGATTTCG 59.266 50.000 0.00 0.00 37.96 3.46
119 120 3.995199 TCAGGATATGTCAGCCGATTTC 58.005 45.455 0.00 0.00 37.96 2.17
120 121 4.321718 CATCAGGATATGTCAGCCGATTT 58.678 43.478 0.00 0.00 37.96 2.17
121 122 3.867600 GCATCAGGATATGTCAGCCGATT 60.868 47.826 0.00 0.00 37.96 3.34
122 123 2.354503 GCATCAGGATATGTCAGCCGAT 60.355 50.000 0.00 0.00 37.96 4.18
123 124 1.001293 GCATCAGGATATGTCAGCCGA 59.999 52.381 0.00 0.00 37.96 5.54
124 125 1.270465 TGCATCAGGATATGTCAGCCG 60.270 52.381 0.00 0.00 37.96 5.52
125 126 2.556144 TGCATCAGGATATGTCAGCC 57.444 50.000 0.00 0.00 0.00 4.85
126 127 4.906065 TTTTGCATCAGGATATGTCAGC 57.094 40.909 0.00 0.00 0.00 4.26
127 128 6.700081 CCAAATTTTGCATCAGGATATGTCAG 59.300 38.462 3.50 0.00 0.00 3.51
128 129 6.575267 CCAAATTTTGCATCAGGATATGTCA 58.425 36.000 3.50 0.00 0.00 3.58
129 130 5.464389 GCCAAATTTTGCATCAGGATATGTC 59.536 40.000 9.26 0.00 0.00 3.06
130 131 5.129815 AGCCAAATTTTGCATCAGGATATGT 59.870 36.000 15.83 0.00 0.00 2.29
131 132 5.465390 CAGCCAAATTTTGCATCAGGATATG 59.535 40.000 15.83 0.00 0.00 1.78
132 133 5.364446 TCAGCCAAATTTTGCATCAGGATAT 59.636 36.000 15.83 0.00 0.00 1.63
133 134 4.710865 TCAGCCAAATTTTGCATCAGGATA 59.289 37.500 15.83 0.00 0.00 2.59
134 135 3.516300 TCAGCCAAATTTTGCATCAGGAT 59.484 39.130 15.83 0.00 0.00 3.24
135 136 2.898612 TCAGCCAAATTTTGCATCAGGA 59.101 40.909 15.83 3.52 0.00 3.86
136 137 3.322211 TCAGCCAAATTTTGCATCAGG 57.678 42.857 15.83 0.91 0.00 3.86
137 138 5.898174 TCTATCAGCCAAATTTTGCATCAG 58.102 37.500 15.83 7.63 0.00 2.90
138 139 5.918426 TCTATCAGCCAAATTTTGCATCA 57.082 34.783 15.83 0.45 0.00 3.07
139 140 5.924825 GGATCTATCAGCCAAATTTTGCATC 59.075 40.000 15.83 8.68 0.00 3.91
140 141 5.364446 TGGATCTATCAGCCAAATTTTGCAT 59.636 36.000 15.83 4.95 0.00 3.96
141 142 4.710865 TGGATCTATCAGCCAAATTTTGCA 59.289 37.500 15.83 0.00 0.00 4.08
142 143 5.045872 GTGGATCTATCAGCCAAATTTTGC 58.954 41.667 6.14 6.14 32.68 3.68
143 144 5.361857 AGGTGGATCTATCAGCCAAATTTTG 59.638 40.000 1.99 1.99 32.68 2.44
144 145 5.522641 AGGTGGATCTATCAGCCAAATTTT 58.477 37.500 0.00 0.00 32.68 1.82
145 146 5.134725 AGGTGGATCTATCAGCCAAATTT 57.865 39.130 0.00 0.00 32.68 1.82
146 147 4.803329 AGGTGGATCTATCAGCCAAATT 57.197 40.909 0.00 0.00 32.68 1.82
147 148 5.370880 AGTTAGGTGGATCTATCAGCCAAAT 59.629 40.000 0.00 0.00 32.68 2.32
148 149 4.721776 AGTTAGGTGGATCTATCAGCCAAA 59.278 41.667 0.00 0.00 32.68 3.28
149 150 4.101585 CAGTTAGGTGGATCTATCAGCCAA 59.898 45.833 0.00 0.00 32.68 4.52
150 151 3.643320 CAGTTAGGTGGATCTATCAGCCA 59.357 47.826 0.00 0.00 33.56 4.75
151 152 3.898123 TCAGTTAGGTGGATCTATCAGCC 59.102 47.826 0.00 0.00 33.56 4.85
152 153 5.011533 ACATCAGTTAGGTGGATCTATCAGC 59.988 44.000 0.00 0.00 0.00 4.26
153 154 6.266330 TCACATCAGTTAGGTGGATCTATCAG 59.734 42.308 0.00 0.00 40.32 2.90
154 155 6.136155 TCACATCAGTTAGGTGGATCTATCA 58.864 40.000 0.00 0.00 40.32 2.15
155 156 6.656632 TCACATCAGTTAGGTGGATCTATC 57.343 41.667 0.00 0.00 40.32 2.08
156 157 7.437713 TTTCACATCAGTTAGGTGGATCTAT 57.562 36.000 0.00 0.00 40.32 1.98
157 158 6.867519 TTTCACATCAGTTAGGTGGATCTA 57.132 37.500 0.00 0.00 40.32 1.98
158 159 5.762179 TTTCACATCAGTTAGGTGGATCT 57.238 39.130 0.00 0.00 40.32 2.75
159 160 6.352516 AGATTTCACATCAGTTAGGTGGATC 58.647 40.000 0.00 0.00 40.32 3.36
160 161 6.157645 AGAGATTTCACATCAGTTAGGTGGAT 59.842 38.462 0.00 0.00 40.32 3.41
161 162 5.485353 AGAGATTTCACATCAGTTAGGTGGA 59.515 40.000 0.00 0.00 40.32 4.02
162 163 5.583854 CAGAGATTTCACATCAGTTAGGTGG 59.416 44.000 0.00 0.00 40.32 4.61
163 164 6.169094 ACAGAGATTTCACATCAGTTAGGTG 58.831 40.000 0.00 0.00 41.29 4.00
164 165 6.365970 ACAGAGATTTCACATCAGTTAGGT 57.634 37.500 0.00 0.00 0.00 3.08
165 166 6.314896 GGAACAGAGATTTCACATCAGTTAGG 59.685 42.308 0.00 0.00 0.00 2.69
166 167 7.102346 AGGAACAGAGATTTCACATCAGTTAG 58.898 38.462 0.00 0.00 0.00 2.34
167 168 7.009179 AGGAACAGAGATTTCACATCAGTTA 57.991 36.000 0.00 0.00 0.00 2.24
168 169 5.874093 AGGAACAGAGATTTCACATCAGTT 58.126 37.500 0.00 0.00 0.00 3.16
169 170 5.248020 AGAGGAACAGAGATTTCACATCAGT 59.752 40.000 0.00 0.00 0.00 3.41
170 171 5.581479 CAGAGGAACAGAGATTTCACATCAG 59.419 44.000 0.00 0.00 0.00 2.90
171 172 5.485620 CAGAGGAACAGAGATTTCACATCA 58.514 41.667 0.00 0.00 0.00 3.07
172 173 4.874966 CCAGAGGAACAGAGATTTCACATC 59.125 45.833 0.00 0.00 0.00 3.06
173 174 4.288105 ACCAGAGGAACAGAGATTTCACAT 59.712 41.667 0.00 0.00 0.00 3.21
174 175 3.648067 ACCAGAGGAACAGAGATTTCACA 59.352 43.478 0.00 0.00 0.00 3.58
175 176 4.020662 AGACCAGAGGAACAGAGATTTCAC 60.021 45.833 0.00 0.00 0.00 3.18
176 177 4.163427 AGACCAGAGGAACAGAGATTTCA 58.837 43.478 0.00 0.00 0.00 2.69
177 178 4.382577 GGAGACCAGAGGAACAGAGATTTC 60.383 50.000 0.00 0.00 0.00 2.17
178 179 3.517500 GGAGACCAGAGGAACAGAGATTT 59.482 47.826 0.00 0.00 0.00 2.17
179 180 3.103742 GGAGACCAGAGGAACAGAGATT 58.896 50.000 0.00 0.00 0.00 2.40
180 181 2.043664 TGGAGACCAGAGGAACAGAGAT 59.956 50.000 0.00 0.00 0.00 2.75
181 182 1.429299 TGGAGACCAGAGGAACAGAGA 59.571 52.381 0.00 0.00 0.00 3.10
182 183 1.930251 TGGAGACCAGAGGAACAGAG 58.070 55.000 0.00 0.00 0.00 3.35
193 194 1.075536 TCTGCTAGTGTCTGGAGACCA 59.924 52.381 4.34 0.00 44.15 4.02
194 195 1.474879 GTCTGCTAGTGTCTGGAGACC 59.525 57.143 4.34 0.00 44.15 3.85
195 196 2.163509 TGTCTGCTAGTGTCTGGAGAC 58.836 52.381 7.51 7.51 44.97 3.36
196 197 2.586648 TGTCTGCTAGTGTCTGGAGA 57.413 50.000 0.00 0.00 0.00 3.71
197 198 2.560542 ACTTGTCTGCTAGTGTCTGGAG 59.439 50.000 0.00 0.00 29.93 3.86
198 199 2.598565 ACTTGTCTGCTAGTGTCTGGA 58.401 47.619 0.00 0.00 29.93 3.86
199 200 4.081972 ACATACTTGTCTGCTAGTGTCTGG 60.082 45.833 0.00 0.00 33.12 3.86
200 201 5.065704 ACATACTTGTCTGCTAGTGTCTG 57.934 43.478 0.00 0.00 33.12 3.51
213 214 3.154710 TGTGGACGAGAGACATACTTGT 58.845 45.455 0.00 0.00 39.32 3.16
214 215 3.850122 TGTGGACGAGAGACATACTTG 57.150 47.619 0.00 0.00 0.00 3.16
215 216 4.017126 TCATGTGGACGAGAGACATACTT 58.983 43.478 0.00 0.00 0.00 2.24
216 217 3.621558 TCATGTGGACGAGAGACATACT 58.378 45.455 0.00 0.00 0.00 2.12
217 218 4.106197 GTTCATGTGGACGAGAGACATAC 58.894 47.826 0.00 0.00 0.00 2.39
218 219 3.761752 TGTTCATGTGGACGAGAGACATA 59.238 43.478 0.00 0.00 0.00 2.29
219 220 2.562738 TGTTCATGTGGACGAGAGACAT 59.437 45.455 0.00 0.00 0.00 3.06
220 221 1.960689 TGTTCATGTGGACGAGAGACA 59.039 47.619 0.00 0.00 0.00 3.41
221 222 2.029828 AGTGTTCATGTGGACGAGAGAC 60.030 50.000 0.00 0.00 0.00 3.36
222 223 2.029918 CAGTGTTCATGTGGACGAGAGA 60.030 50.000 0.00 0.00 0.00 3.10
223 224 2.332104 CAGTGTTCATGTGGACGAGAG 58.668 52.381 0.00 0.00 0.00 3.20
224 225 1.605457 GCAGTGTTCATGTGGACGAGA 60.605 52.381 0.00 0.00 0.00 4.04
225 226 0.792640 GCAGTGTTCATGTGGACGAG 59.207 55.000 0.00 0.00 0.00 4.18
226 227 0.602638 GGCAGTGTTCATGTGGACGA 60.603 55.000 0.00 0.00 0.00 4.20
227 228 0.884259 TGGCAGTGTTCATGTGGACG 60.884 55.000 0.00 0.00 0.00 4.79
228 229 0.877071 CTGGCAGTGTTCATGTGGAC 59.123 55.000 6.28 0.00 0.00 4.02
229 230 0.764271 TCTGGCAGTGTTCATGTGGA 59.236 50.000 15.27 0.00 0.00 4.02
230 231 0.877071 GTCTGGCAGTGTTCATGTGG 59.123 55.000 15.27 0.00 0.00 4.17
231 232 1.534163 CTGTCTGGCAGTGTTCATGTG 59.466 52.381 15.27 0.00 40.27 3.21
232 233 1.888215 CTGTCTGGCAGTGTTCATGT 58.112 50.000 15.27 0.00 40.27 3.21
244 245 2.507110 AATCGACGGCCACTGTCTGG 62.507 60.000 2.24 0.00 44.08 3.86
245 246 0.172578 TAATCGACGGCCACTGTCTG 59.827 55.000 2.24 0.00 34.17 3.51
246 247 0.172803 GTAATCGACGGCCACTGTCT 59.827 55.000 2.24 0.00 34.17 3.41
247 248 0.804933 GGTAATCGACGGCCACTGTC 60.805 60.000 2.24 0.58 0.00 3.51
248 249 1.217244 GGTAATCGACGGCCACTGT 59.783 57.895 2.24 0.00 0.00 3.55
249 250 0.527817 GAGGTAATCGACGGCCACTG 60.528 60.000 2.24 0.00 0.00 3.66
250 251 1.673808 GGAGGTAATCGACGGCCACT 61.674 60.000 2.24 0.00 0.00 4.00
251 252 1.227176 GGAGGTAATCGACGGCCAC 60.227 63.158 2.24 0.00 0.00 5.01
252 253 1.259142 TTGGAGGTAATCGACGGCCA 61.259 55.000 2.24 0.00 32.02 5.36
253 254 0.808847 GTTGGAGGTAATCGACGGCC 60.809 60.000 0.00 0.00 0.00 6.13
254 255 0.175073 AGTTGGAGGTAATCGACGGC 59.825 55.000 0.00 0.00 0.00 5.68
255 256 1.922570 CAGTTGGAGGTAATCGACGG 58.077 55.000 0.00 0.00 0.00 4.79
256 257 1.278238 GCAGTTGGAGGTAATCGACG 58.722 55.000 0.00 0.00 0.00 5.12
257 258 1.278238 CGCAGTTGGAGGTAATCGAC 58.722 55.000 0.00 0.00 0.00 4.20
258 259 0.459585 GCGCAGTTGGAGGTAATCGA 60.460 55.000 0.30 0.00 0.00 3.59
259 260 1.429148 GGCGCAGTTGGAGGTAATCG 61.429 60.000 10.83 0.00 0.00 3.34
260 261 1.095807 GGGCGCAGTTGGAGGTAATC 61.096 60.000 10.83 0.00 0.00 1.75
261 262 1.077716 GGGCGCAGTTGGAGGTAAT 60.078 57.895 10.83 0.00 0.00 1.89
262 263 2.221299 AGGGCGCAGTTGGAGGTAA 61.221 57.895 10.83 0.00 0.00 2.85
263 264 2.606519 AGGGCGCAGTTGGAGGTA 60.607 61.111 10.83 0.00 0.00 3.08
264 265 4.335647 CAGGGCGCAGTTGGAGGT 62.336 66.667 10.83 0.00 0.00 3.85
265 266 4.335647 ACAGGGCGCAGTTGGAGG 62.336 66.667 10.83 0.00 0.00 4.30
266 267 2.743928 GACAGGGCGCAGTTGGAG 60.744 66.667 10.83 0.00 0.00 3.86
267 268 3.240134 GAGACAGGGCGCAGTTGGA 62.240 63.158 10.83 0.00 0.00 3.53
268 269 1.888436 TAGAGACAGGGCGCAGTTGG 61.888 60.000 10.83 0.00 0.00 3.77
269 270 0.459237 CTAGAGACAGGGCGCAGTTG 60.459 60.000 10.83 6.61 0.00 3.16
270 271 0.900647 ACTAGAGACAGGGCGCAGTT 60.901 55.000 10.83 0.00 0.00 3.16
271 272 1.304547 ACTAGAGACAGGGCGCAGT 60.305 57.895 10.83 4.01 0.00 4.40
272 273 1.140589 CACTAGAGACAGGGCGCAG 59.859 63.158 10.83 0.00 0.00 5.18
273 274 3.006756 GCACTAGAGACAGGGCGCA 62.007 63.158 10.83 0.00 34.72 6.09
274 275 2.202810 GCACTAGAGACAGGGCGC 60.203 66.667 0.00 0.00 34.72 6.53
275 276 2.496817 GGCACTAGAGACAGGGCG 59.503 66.667 0.00 0.00 46.42 6.13
276 277 2.736826 GGGGCACTAGAGACAGGGC 61.737 68.421 0.00 0.00 44.64 5.19
277 278 1.306141 TGGGGCACTAGAGACAGGG 60.306 63.158 0.00 0.00 0.00 4.45
278 279 1.901085 GTGGGGCACTAGAGACAGG 59.099 63.158 0.00 0.00 0.00 4.00
279 280 0.965866 TCGTGGGGCACTAGAGACAG 60.966 60.000 0.00 0.00 31.34 3.51
280 281 0.324368 ATCGTGGGGCACTAGAGACA 60.324 55.000 0.00 0.00 31.34 3.41
281 282 0.103208 CATCGTGGGGCACTAGAGAC 59.897 60.000 0.00 0.00 31.34 3.36
282 283 1.676678 GCATCGTGGGGCACTAGAGA 61.677 60.000 0.00 0.00 31.34 3.10
283 284 1.227380 GCATCGTGGGGCACTAGAG 60.227 63.158 0.00 0.00 31.34 2.43
284 285 1.960040 CTGCATCGTGGGGCACTAGA 61.960 60.000 0.00 0.00 35.86 2.43
285 286 1.522355 CTGCATCGTGGGGCACTAG 60.522 63.158 0.00 0.00 35.86 2.57
286 287 2.290287 ACTGCATCGTGGGGCACTA 61.290 57.895 0.00 0.00 35.86 2.74
287 288 3.640407 ACTGCATCGTGGGGCACT 61.640 61.111 0.00 0.00 35.86 4.40
288 289 3.434319 CACTGCATCGTGGGGCAC 61.434 66.667 0.00 0.00 35.86 5.01
294 295 2.741985 TTCCGCCACTGCATCGTG 60.742 61.111 0.00 0.00 37.32 4.35
295 296 2.742372 GTTCCGCCACTGCATCGT 60.742 61.111 0.00 0.00 37.32 3.73
296 297 3.499737 GGTTCCGCCACTGCATCG 61.500 66.667 0.00 0.00 37.32 3.84
297 298 2.359850 TGGTTCCGCCACTGCATC 60.360 61.111 0.00 0.00 43.61 3.91
305 306 1.674651 GAAGACCCTTGGTTCCGCC 60.675 63.158 0.00 0.00 35.25 6.13
306 307 1.674651 GGAAGACCCTTGGTTCCGC 60.675 63.158 0.00 0.00 35.25 5.54
307 308 4.716003 GGAAGACCCTTGGTTCCG 57.284 61.111 0.00 0.00 35.25 4.30
317 318 2.773458 TGGAAGTCCAGGGAAGACC 58.227 57.895 0.00 0.00 42.01 3.85
327 328 4.855340 TCTTTGGTATTCCATGGAAGTCC 58.145 43.478 29.98 29.47 43.91 3.85
328 329 7.260603 CAATTCTTTGGTATTCCATGGAAGTC 58.739 38.462 29.98 23.27 43.91 3.01
329 330 6.351286 GCAATTCTTTGGTATTCCATGGAAGT 60.351 38.462 29.98 20.14 43.91 3.01
330 331 6.044682 GCAATTCTTTGGTATTCCATGGAAG 58.955 40.000 29.98 16.03 43.91 3.46
331 332 5.721000 AGCAATTCTTTGGTATTCCATGGAA 59.279 36.000 28.92 28.92 43.91 3.53
332 333 5.127519 CAGCAATTCTTTGGTATTCCATGGA 59.872 40.000 11.44 11.44 43.91 3.41
333 334 5.127519 TCAGCAATTCTTTGGTATTCCATGG 59.872 40.000 4.97 4.97 43.91 3.66
334 335 6.211587 TCAGCAATTCTTTGGTATTCCATG 57.788 37.500 0.00 0.00 43.91 3.66
335 336 7.124599 TGAATCAGCAATTCTTTGGTATTCCAT 59.875 33.333 11.66 0.00 43.61 3.41
336 337 6.436847 TGAATCAGCAATTCTTTGGTATTCCA 59.563 34.615 11.66 0.00 43.61 3.53
337 338 6.866480 TGAATCAGCAATTCTTTGGTATTCC 58.134 36.000 11.66 0.00 43.61 3.01
338 339 6.976925 CCTGAATCAGCAATTCTTTGGTATTC 59.023 38.462 4.40 0.00 43.61 1.75
339 340 6.127253 CCCTGAATCAGCAATTCTTTGGTATT 60.127 38.462 4.40 0.00 43.61 1.89
340 341 5.361857 CCCTGAATCAGCAATTCTTTGGTAT 59.638 40.000 4.40 0.00 43.61 2.73
341 342 4.706476 CCCTGAATCAGCAATTCTTTGGTA 59.294 41.667 4.40 0.00 43.61 3.25
342 343 3.512724 CCCTGAATCAGCAATTCTTTGGT 59.487 43.478 4.40 0.00 43.61 3.67
343 344 3.118884 CCCCTGAATCAGCAATTCTTTGG 60.119 47.826 4.40 10.54 43.61 3.28
344 345 3.512724 ACCCCTGAATCAGCAATTCTTTG 59.487 43.478 4.40 4.34 43.61 2.77
345 346 3.766051 GACCCCTGAATCAGCAATTCTTT 59.234 43.478 4.40 0.00 43.61 2.52
346 347 3.011032 AGACCCCTGAATCAGCAATTCTT 59.989 43.478 4.40 0.00 43.61 2.52
347 348 2.579860 AGACCCCTGAATCAGCAATTCT 59.420 45.455 4.40 0.85 43.61 2.40
348 349 3.010200 AGACCCCTGAATCAGCAATTC 57.990 47.619 4.40 5.20 43.54 2.17
349 350 3.359950 GAAGACCCCTGAATCAGCAATT 58.640 45.455 4.40 0.00 0.00 2.32
350 351 2.357569 GGAAGACCCCTGAATCAGCAAT 60.358 50.000 4.40 0.00 0.00 3.56
351 352 1.004745 GGAAGACCCCTGAATCAGCAA 59.995 52.381 4.40 0.00 0.00 3.91
352 353 0.620556 GGAAGACCCCTGAATCAGCA 59.379 55.000 4.40 0.00 0.00 4.41
353 354 3.485764 GGAAGACCCCTGAATCAGC 57.514 57.895 4.40 0.00 0.00 4.26
362 363 4.790718 ACAAATATGTAGGGAAGACCCC 57.209 45.455 0.00 0.00 44.28 4.95
364 365 4.338400 GGCAACAAATATGTAGGGAAGACC 59.662 45.833 0.00 0.00 39.40 3.85
365 366 5.500645 GGCAACAAATATGTAGGGAAGAC 57.499 43.478 0.00 0.00 39.40 3.01
380 381 7.632245 TGCAATACAATAGCAATATGGCAACAA 60.632 33.333 4.54 0.00 43.02 2.83
381 382 6.183360 TGCAATACAATAGCAATATGGCAACA 60.183 34.615 4.54 0.00 43.67 3.33
382 383 6.144402 GTGCAATACAATAGCAATATGGCAAC 59.856 38.462 4.54 0.00 37.08 4.17
383 384 6.183360 TGTGCAATACAATAGCAATATGGCAA 60.183 34.615 4.54 0.00 37.08 4.52
384 385 5.301298 TGTGCAATACAATAGCAATATGGCA 59.699 36.000 4.54 0.00 40.35 4.92
385 386 5.771469 TGTGCAATACAATAGCAATATGGC 58.229 37.500 0.00 0.00 40.35 4.40
398 399 6.098679 GCTTGGTATTCATTTGTGCAATACA 58.901 36.000 0.00 0.00 35.52 2.29
399 400 6.098679 TGCTTGGTATTCATTTGTGCAATAC 58.901 36.000 0.00 0.00 33.81 1.89
400 401 6.278172 TGCTTGGTATTCATTTGTGCAATA 57.722 33.333 0.00 0.00 0.00 1.90
401 402 5.149973 TGCTTGGTATTCATTTGTGCAAT 57.850 34.783 0.00 0.00 0.00 3.56
402 403 4.597404 TGCTTGGTATTCATTTGTGCAA 57.403 36.364 0.00 0.00 0.00 4.08
403 404 4.280425 TCTTGCTTGGTATTCATTTGTGCA 59.720 37.500 0.00 0.00 0.00 4.57
404 405 4.808558 TCTTGCTTGGTATTCATTTGTGC 58.191 39.130 0.00 0.00 0.00 4.57
405 406 7.894376 ATTTCTTGCTTGGTATTCATTTGTG 57.106 32.000 0.00 0.00 0.00 3.33
406 407 7.603784 GGAATTTCTTGCTTGGTATTCATTTGT 59.396 33.333 0.00 0.00 0.00 2.83
407 408 7.820872 AGGAATTTCTTGCTTGGTATTCATTTG 59.179 33.333 0.00 0.00 26.80 2.32
408 409 7.820872 CAGGAATTTCTTGCTTGGTATTCATTT 59.179 33.333 0.00 0.00 29.43 2.32
409 410 7.325694 CAGGAATTTCTTGCTTGGTATTCATT 58.674 34.615 0.00 0.00 29.43 2.57
410 411 6.127253 CCAGGAATTTCTTGCTTGGTATTCAT 60.127 38.462 3.11 0.00 29.43 2.57
411 412 5.185635 CCAGGAATTTCTTGCTTGGTATTCA 59.814 40.000 3.11 0.00 29.43 2.57
412 413 5.654497 CCAGGAATTTCTTGCTTGGTATTC 58.346 41.667 3.11 0.00 29.43 1.75
413 414 4.081476 GCCAGGAATTTCTTGCTTGGTATT 60.081 41.667 2.49 0.00 29.43 1.89
414 415 3.448660 GCCAGGAATTTCTTGCTTGGTAT 59.551 43.478 2.49 0.00 29.43 2.73
415 416 2.825532 GCCAGGAATTTCTTGCTTGGTA 59.174 45.455 2.49 0.00 29.43 3.25
416 417 1.620323 GCCAGGAATTTCTTGCTTGGT 59.380 47.619 2.49 0.00 29.43 3.67
417 418 1.897802 AGCCAGGAATTTCTTGCTTGG 59.102 47.619 6.50 0.00 32.71 3.61
418 419 2.094338 GGAGCCAGGAATTTCTTGCTTG 60.094 50.000 13.34 0.00 36.13 4.01
419 420 2.174360 GGAGCCAGGAATTTCTTGCTT 58.826 47.619 13.34 0.00 36.13 3.91
420 421 1.844687 GGAGCCAGGAATTTCTTGCT 58.155 50.000 12.06 12.06 38.28 3.91
421 422 0.453390 CGGAGCCAGGAATTTCTTGC 59.547 55.000 1.40 1.40 0.00 4.01
440 441 2.874780 CGTCGTCGTAGCAGTGGC 60.875 66.667 0.00 0.00 41.61 5.01
441 442 1.511464 GTCGTCGTCGTAGCAGTGG 60.511 63.158 1.33 0.00 38.33 4.00
442 443 1.511464 GGTCGTCGTCGTAGCAGTG 60.511 63.158 1.33 0.00 38.33 3.66
443 444 2.684843 GGGTCGTCGTCGTAGCAGT 61.685 63.158 1.33 0.00 38.33 4.40
444 445 2.099831 GGGTCGTCGTCGTAGCAG 59.900 66.667 1.33 0.00 38.33 4.24
445 446 2.191354 CTTGGGTCGTCGTCGTAGCA 62.191 60.000 1.33 0.00 38.33 3.49
446 447 1.513586 CTTGGGTCGTCGTCGTAGC 60.514 63.158 1.33 0.00 38.33 3.58
447 448 0.518636 TTCTTGGGTCGTCGTCGTAG 59.481 55.000 1.33 0.00 38.33 3.51
448 449 0.518636 CTTCTTGGGTCGTCGTCGTA 59.481 55.000 1.33 0.00 38.33 3.43
449 450 1.285023 CTTCTTGGGTCGTCGTCGT 59.715 57.895 1.33 0.00 38.33 4.34
450 451 1.443872 CCTTCTTGGGTCGTCGTCG 60.444 63.158 0.00 0.00 38.55 5.12
457 458 4.344865 TGGCGGCCTTCTTGGGTC 62.345 66.667 21.46 0.00 36.00 4.46
458 459 4.660938 GTGGCGGCCTTCTTGGGT 62.661 66.667 21.46 0.00 36.00 4.51
471 472 1.268079 GTTCTGCTTCTTCAAGGTGGC 59.732 52.381 0.00 0.00 0.00 5.01
474 475 1.543429 CGGGTTCTGCTTCTTCAAGGT 60.543 52.381 0.00 0.00 0.00 3.50
492 493 3.491342 TCTTGATGATCTCCCTACTCGG 58.509 50.000 0.00 0.00 0.00 4.63
521 525 2.183679 GAGATCTTCTGGTGGACCACT 58.816 52.381 23.72 2.02 42.01 4.00
555 559 1.494721 GGGTTATGCCATGGAGAAGGA 59.505 52.381 18.40 0.00 39.65 3.36
611 621 2.350134 CCTGCTGCAGCTTCCTCA 59.650 61.111 36.61 16.65 42.66 3.86
638 651 1.295357 CGCGTCCATAGTTGCACCAA 61.295 55.000 0.00 0.00 0.00 3.67
646 659 0.382515 GAGCTCTTCGCGTCCATAGT 59.617 55.000 6.43 0.00 45.59 2.12
658 671 2.159170 GCTGTTCCTACATCGAGCTCTT 60.159 50.000 12.85 0.00 32.86 2.85
675 688 1.731433 CTGTTGCACCTTGCTGCTGT 61.731 55.000 0.00 0.00 45.31 4.40
683 696 1.529244 GCCTCCACTGTTGCACCTT 60.529 57.895 0.00 0.00 0.00 3.50
684 697 2.113986 GCCTCCACTGTTGCACCT 59.886 61.111 0.00 0.00 0.00 4.00
685 698 1.968540 GAGCCTCCACTGTTGCACC 60.969 63.158 0.00 0.00 0.00 5.01
721 734 1.532238 GGGAACATAGAGCACCCCC 59.468 63.158 0.00 0.00 35.00 5.40
726 739 2.027192 GTGAACAGGGGAACATAGAGCA 60.027 50.000 0.00 0.00 0.00 4.26
734 747 2.258726 GCCACGTGAACAGGGGAAC 61.259 63.158 19.30 0.00 0.00 3.62
741 754 0.535335 GGGAGATAGCCACGTGAACA 59.465 55.000 19.30 0.72 0.00 3.18
746 759 1.961180 GCTGTGGGAGATAGCCACGT 61.961 60.000 0.00 0.00 37.28 4.49
752 765 0.249073 CCGTTCGCTGTGGGAGATAG 60.249 60.000 0.00 0.00 0.00 2.08
812 828 1.804396 CTGTTGGATTTGGGCGCACA 61.804 55.000 9.15 9.15 0.00 4.57
830 846 1.910772 AGCGAACAGACCTGGAGCT 60.911 57.895 0.00 6.22 35.22 4.09
838 854 1.329599 ACGTTTTTCCAGCGAACAGAC 59.670 47.619 0.00 0.00 0.00 3.51
839 855 1.658994 ACGTTTTTCCAGCGAACAGA 58.341 45.000 0.00 0.00 0.00 3.41
840 856 2.372350 GAACGTTTTTCCAGCGAACAG 58.628 47.619 0.46 0.00 0.00 3.16
872 888 4.587306 ACTATCACAAATGTTATTGCGCG 58.413 39.130 0.00 0.00 33.52 6.86
893 909 2.491675 GGCCCAGCCCATATAACTAC 57.508 55.000 0.00 0.00 44.06 2.73
994 1029 2.885113 CGTCTGGTCCATCGAGCA 59.115 61.111 9.99 0.00 44.09 4.26
1287 1322 0.033601 GGAGTCAGAGAGGCCAGAGA 60.034 60.000 5.01 0.00 0.00 3.10
1291 1326 0.337773 ATGAGGAGTCAGAGAGGCCA 59.662 55.000 5.01 0.00 35.66 5.36
1328 1363 3.041211 TGCCACCAGCTATCAAGATACT 58.959 45.455 0.00 0.00 44.23 2.12
1346 1382 0.654683 GCTTCACTGACGATGATGCC 59.345 55.000 0.00 0.00 39.90 4.40
1360 1396 6.544197 TGAACAAAACTGTAACCTATGCTTCA 59.456 34.615 0.00 0.00 0.00 3.02
1362 1398 6.952773 TGAACAAAACTGTAACCTATGCTT 57.047 33.333 0.00 0.00 0.00 3.91
1390 1426 1.716826 GGCGAACTCGAGACTCGGAT 61.717 60.000 29.27 10.22 40.88 4.18
1408 1444 0.746563 TCCCTTCCTAATTTGCGCGG 60.747 55.000 8.83 0.00 0.00 6.46
1459 1495 0.329596 GGACCAAGCCAGGAGTGATT 59.670 55.000 0.00 0.00 0.00 2.57
1492 1528 2.810852 AGCAGAAACTCAAACTAGCTGC 59.189 45.455 0.00 0.00 45.45 5.25
1518 1555 3.243068 ACCAAACACACAGCTCGAATTTC 60.243 43.478 0.00 0.00 0.00 2.17
1524 1561 0.029300 CCAACCAAACACACAGCTCG 59.971 55.000 0.00 0.00 0.00 5.03
1539 1576 6.754675 GTGCAATAATATACAACCCAACCAAC 59.245 38.462 0.00 0.00 0.00 3.77
1568 1605 1.814394 GCACTCATGGAACTCATTGCA 59.186 47.619 0.00 0.00 40.82 4.08
1576 1613 0.792640 CGTGTCAGCACTCATGGAAC 59.207 55.000 0.00 0.00 43.16 3.62
1589 1626 2.431771 CGCGATGAACCCGTGTCA 60.432 61.111 0.00 0.00 33.40 3.58
1594 1658 0.375454 TAATTTGCGCGATGAACCCG 59.625 50.000 12.10 0.00 0.00 5.28
1595 1659 1.268539 CCTAATTTGCGCGATGAACCC 60.269 52.381 12.10 0.00 0.00 4.11
1596 1660 1.668751 TCCTAATTTGCGCGATGAACC 59.331 47.619 12.10 0.00 0.00 3.62
1597 1661 2.705154 GTCCTAATTTGCGCGATGAAC 58.295 47.619 12.10 0.00 0.00 3.18
1598 1662 1.326245 CGTCCTAATTTGCGCGATGAA 59.674 47.619 12.10 0.00 0.00 2.57
1599 1663 0.927537 CGTCCTAATTTGCGCGATGA 59.072 50.000 12.10 0.00 0.00 2.92
1600 1664 0.042188 CCGTCCTAATTTGCGCGATG 60.042 55.000 12.10 0.00 0.00 3.84
1601 1665 0.179094 TCCGTCCTAATTTGCGCGAT 60.179 50.000 12.10 0.00 0.00 4.58
1602 1666 0.390078 TTCCGTCCTAATTTGCGCGA 60.390 50.000 12.10 0.00 0.00 5.87
1603 1667 0.655733 ATTCCGTCCTAATTTGCGCG 59.344 50.000 0.00 0.00 0.00 6.86
1604 1668 1.268539 CCATTCCGTCCTAATTTGCGC 60.269 52.381 0.00 0.00 0.00 6.09
1605 1669 2.014128 ACCATTCCGTCCTAATTTGCG 58.986 47.619 0.00 0.00 0.00 4.85
1606 1670 3.192633 ACAACCATTCCGTCCTAATTTGC 59.807 43.478 0.00 0.00 0.00 3.68
1607 1671 5.413213 TGTACAACCATTCCGTCCTAATTTG 59.587 40.000 0.00 0.00 0.00 2.32
1608 1672 5.562635 TGTACAACCATTCCGTCCTAATTT 58.437 37.500 0.00 0.00 0.00 1.82
1609 1673 5.168647 TGTACAACCATTCCGTCCTAATT 57.831 39.130 0.00 0.00 0.00 1.40
1610 1674 4.829872 TGTACAACCATTCCGTCCTAAT 57.170 40.909 0.00 0.00 0.00 1.73
1611 1675 4.040706 AGTTGTACAACCATTCCGTCCTAA 59.959 41.667 30.36 0.00 42.06 2.69
1612 1676 3.579586 AGTTGTACAACCATTCCGTCCTA 59.420 43.478 30.36 0.00 42.06 2.94
1613 1677 2.370849 AGTTGTACAACCATTCCGTCCT 59.629 45.455 30.36 9.21 42.06 3.85
1614 1678 2.740447 GAGTTGTACAACCATTCCGTCC 59.260 50.000 30.36 6.30 42.06 4.79
1615 1679 2.740447 GGAGTTGTACAACCATTCCGTC 59.260 50.000 30.36 20.23 42.06 4.79
1616 1680 2.551504 GGGAGTTGTACAACCATTCCGT 60.552 50.000 30.36 13.70 42.06 4.69
1617 1681 2.081462 GGGAGTTGTACAACCATTCCG 58.919 52.381 30.36 0.00 42.06 4.30
1618 1682 3.149005 TGGGAGTTGTACAACCATTCC 57.851 47.619 30.36 28.05 42.06 3.01
1619 1683 4.082245 CCATTGGGAGTTGTACAACCATTC 60.082 45.833 30.36 22.10 42.06 2.67
1620 1684 3.831911 CCATTGGGAGTTGTACAACCATT 59.168 43.478 30.36 15.80 42.06 3.16
1630 1694 1.205417 GTGATTGGCCATTGGGAGTTG 59.795 52.381 6.09 0.00 35.59 3.16
1678 1743 3.142174 AGCTGAAACTAAACCTGACTGC 58.858 45.455 0.00 0.00 0.00 4.40
1683 1748 5.734720 TCCATCTAGCTGAAACTAAACCTG 58.265 41.667 0.00 0.00 0.00 4.00
1694 1762 2.159184 CGCTCAGTTTCCATCTAGCTGA 60.159 50.000 0.00 0.00 35.29 4.26
1696 1764 1.827969 ACGCTCAGTTTCCATCTAGCT 59.172 47.619 0.00 0.00 0.00 3.32
1700 1768 2.550830 AACACGCTCAGTTTCCATCT 57.449 45.000 0.00 0.00 0.00 2.90
1713 1781 7.167831 ACAATACAACCAAAATAAAACACGC 57.832 32.000 0.00 0.00 0.00 5.34
1732 1800 9.445878 TTCGTTGTAAATGGGTAACATACAATA 57.554 29.630 0.00 0.00 39.15 1.90
1864 1976 4.152402 CAGGTTGTCACAAGGAGATTAACG 59.848 45.833 0.00 0.00 0.00 3.18
1869 1981 1.701847 AGCAGGTTGTCACAAGGAGAT 59.298 47.619 0.00 0.00 0.00 2.75
1880 1992 3.670625 TGCTTAATAACGAGCAGGTTGT 58.329 40.909 0.00 0.00 43.46 3.32
1890 2002 7.464830 AGTACATAACAGCTGCTTAATAACG 57.535 36.000 15.27 0.00 0.00 3.18
1898 2010 7.348080 TCAATAGTAGTACATAACAGCTGCT 57.652 36.000 15.27 3.62 0.00 4.24
1899 2011 8.420374 TTTCAATAGTAGTACATAACAGCTGC 57.580 34.615 15.27 0.00 0.00 5.25
1998 2189 4.630069 ACGATAACCTGCATGTAAGACAAC 59.370 41.667 0.00 0.00 0.00 3.32
2062 2253 4.384056 AGCGATACCAATGATTTGAGGAG 58.616 43.478 0.00 0.00 34.60 3.69
2073 2264 5.877012 CCTAGATTGCATAAGCGATACCAAT 59.123 40.000 0.00 0.00 44.95 3.16
2074 2265 5.221641 ACCTAGATTGCATAAGCGATACCAA 60.222 40.000 0.00 0.00 44.95 3.67
2077 2268 7.258441 TCATACCTAGATTGCATAAGCGATAC 58.742 38.462 0.00 0.00 44.95 2.24
2085 2276 9.605275 GAAGCATTATCATACCTAGATTGCATA 57.395 33.333 0.00 0.00 33.69 3.14
2091 2282 9.554053 ACCTTAGAAGCATTATCATACCTAGAT 57.446 33.333 0.00 0.00 0.00 1.98
2112 2303 6.779860 AGTGCTAAATTGAAAGAGGACCTTA 58.220 36.000 0.00 0.00 34.00 2.69
2113 2304 5.635120 AGTGCTAAATTGAAAGAGGACCTT 58.365 37.500 0.00 0.00 36.47 3.50
2118 2309 7.276438 GCCATTTTAGTGCTAAATTGAAAGAGG 59.724 37.037 19.67 9.32 38.04 3.69
2123 2314 6.397272 CCAGCCATTTTAGTGCTAAATTGAA 58.603 36.000 19.67 3.41 38.04 2.69
2124 2315 5.105392 CCCAGCCATTTTAGTGCTAAATTGA 60.105 40.000 19.67 3.69 38.04 2.57
2135 2326 3.945285 ACATAACGTCCCAGCCATTTTAG 59.055 43.478 0.00 0.00 0.00 1.85
2136 2327 3.958018 ACATAACGTCCCAGCCATTTTA 58.042 40.909 0.00 0.00 0.00 1.52
2141 2332 0.958382 GCAACATAACGTCCCAGCCA 60.958 55.000 0.00 0.00 0.00 4.75
2151 2342 1.262151 ACGGAACACACGCAACATAAC 59.738 47.619 0.00 0.00 34.00 1.89
2158 2349 1.448013 TGTTCACGGAACACACGCA 60.448 52.632 13.34 0.00 45.88 5.24
2213 2404 3.142951 TCATGTTAACCCAGTCAAACGG 58.857 45.455 2.48 0.00 0.00 4.44
2325 2520 1.488705 CCAGTACTGAACCCCTGCCA 61.489 60.000 24.68 0.00 0.00 4.92
2340 2535 0.178953 ATGGGAGCAAGCAAACCAGT 60.179 50.000 8.05 0.00 34.23 4.00
2400 2595 3.181463 GCAGCAGAGAAGAATCCTGAGAT 60.181 47.826 0.00 0.00 0.00 2.75
2543 2738 1.916000 GCGTCAATCAGCTGAAAATGC 59.084 47.619 22.50 20.15 0.00 3.56
2545 2740 3.503363 TCTTGCGTCAATCAGCTGAAAAT 59.497 39.130 22.50 7.39 0.00 1.82
2603 2798 3.058432 CGCTGAAATGATAATCCAGGCAG 60.058 47.826 0.00 0.00 0.00 4.85
2667 2865 4.787260 TGCTTGAATTACACACATGCAT 57.213 36.364 0.00 0.00 38.86 3.96
2694 2902 3.103447 TCATCATCGCAGATCTGGAAC 57.897 47.619 23.89 6.79 45.12 3.62
2786 2994 4.321718 CTCGGTTTCCATAGCATCATCAT 58.678 43.478 0.00 0.00 0.00 2.45
2847 3055 0.820226 TTCTCTCTGTCTCCATGGCG 59.180 55.000 6.96 0.00 0.00 5.69
2936 3144 8.663025 CGATCAGTTACAGTACAGTTACTAGAA 58.337 37.037 9.36 0.84 36.31 2.10
2951 3159 2.820197 AGCTGTGTCTCGATCAGTTACA 59.180 45.455 0.00 0.28 0.00 2.41
2952 3160 3.175152 CAGCTGTGTCTCGATCAGTTAC 58.825 50.000 5.25 0.00 0.00 2.50
2953 3161 2.416027 GCAGCTGTGTCTCGATCAGTTA 60.416 50.000 16.64 0.00 0.00 2.24
2955 3163 0.108898 GCAGCTGTGTCTCGATCAGT 60.109 55.000 16.64 0.00 0.00 3.41
2956 3164 1.138636 CGCAGCTGTGTCTCGATCAG 61.139 60.000 19.30 0.00 0.00 2.90
2957 3165 1.153958 CGCAGCTGTGTCTCGATCA 60.154 57.895 19.30 0.00 0.00 2.92
2958 3166 0.734253 AACGCAGCTGTGTCTCGATC 60.734 55.000 31.62 2.66 37.87 3.69
2959 3167 0.319900 AAACGCAGCTGTGTCTCGAT 60.320 50.000 31.62 14.32 37.87 3.59
2960 3168 1.067416 AAACGCAGCTGTGTCTCGA 59.933 52.632 31.62 0.00 37.87 4.04
2961 3169 1.202568 CAAACGCAGCTGTGTCTCG 59.797 57.895 31.62 19.85 37.87 4.04
2962 3170 1.082496 GCAAACGCAGCTGTGTCTC 60.082 57.895 31.62 19.29 37.87 3.36
2963 3171 1.819208 TGCAAACGCAGCTGTGTCT 60.819 52.632 31.62 17.57 37.87 3.41
2964 3172 2.715005 TGCAAACGCAGCTGTGTC 59.285 55.556 31.62 20.07 37.87 3.67
3054 3270 4.711399 TGGCAGTCTTGATTCCTGATATG 58.289 43.478 0.00 0.00 0.00 1.78
3069 3285 2.923121 TGATTAGCTGGAATGGCAGTC 58.077 47.619 6.36 6.36 0.00 3.51
3070 3286 3.589951 ATGATTAGCTGGAATGGCAGT 57.410 42.857 0.00 0.00 0.00 4.40
3071 3287 6.387465 CAAATATGATTAGCTGGAATGGCAG 58.613 40.000 0.00 0.00 0.00 4.85
3109 3325 7.307870 GCCATCTAAACTGACTGATGATGAATC 60.308 40.741 0.00 0.00 38.72 2.52
3120 3336 6.747414 TGGTATATGCCATCTAAACTGACT 57.253 37.500 8.67 0.00 32.81 3.41
3177 3393 8.439964 GGGTATACCTATTCTGTTACCCAATA 57.560 38.462 21.25 0.00 45.33 1.90
3269 3486 6.317642 TCGTTTACATATTTTGGTAGCATGCT 59.682 34.615 25.99 25.99 0.00 3.79
3356 3574 5.962031 AGTCTTTTCCCTTTTTACTTGGGTT 59.038 36.000 0.00 0.00 41.58 4.11
3358 3576 5.010719 GGAGTCTTTTCCCTTTTTACTTGGG 59.989 44.000 0.00 0.00 42.20 4.12
3394 3612 4.394300 GCTGAAGATGTGCTCTTGTTATGT 59.606 41.667 0.00 0.00 44.42 2.29
3470 3688 2.835156 TGATACCGGTGGAGAATGTTCA 59.165 45.455 19.93 3.39 0.00 3.18
3495 3723 1.409064 TCGATCGTTCTGGATTCTGGG 59.591 52.381 15.94 0.00 0.00 4.45
3529 3759 5.098663 ACCTCCAAAGGATCTAGTGGTTTA 58.901 41.667 0.00 0.00 46.67 2.01
3530 3760 3.916989 ACCTCCAAAGGATCTAGTGGTTT 59.083 43.478 0.00 0.00 46.67 3.27
3546 3776 0.397254 TTTTTGGCCCGAAACCTCCA 60.397 50.000 0.00 0.00 0.00 3.86
3582 3812 1.446099 CACGTCGATGTGGACAGGG 60.446 63.158 26.79 2.37 36.73 4.45
3625 3855 5.658634 ACTCTTCTACACATTCCTCTATGCA 59.341 40.000 0.00 0.00 0.00 3.96
3628 3858 5.836358 GGGACTCTTCTACACATTCCTCTAT 59.164 44.000 0.00 0.00 0.00 1.98
3763 3993 4.838152 GCCGCGCTTCCTCCATCA 62.838 66.667 5.56 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.