Multiple sequence alignment - TraesCS5A01G010900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G010900 chr5A 100.000 2399 0 0 1 2399 7166768 7169166 0.000000e+00 4431.0
1 TraesCS5A01G010900 chr5B 86.765 1088 79 28 813 1866 9243399 9244455 0.000000e+00 1151.0
2 TraesCS5A01G010900 chr5B 84.685 111 11 4 370 479 9243060 9243165 3.260000e-19 106.0
3 TraesCS5A01G010900 chr5D 84.675 1168 103 45 370 1515 9068015 9069128 0.000000e+00 1096.0
4 TraesCS5A01G010900 chr3B 82.726 1071 82 55 370 1399 726621113 726622121 0.000000e+00 857.0
5 TraesCS5A01G010900 chr3B 89.234 483 44 7 1890 2365 262966804 262967285 4.410000e-167 597.0
6 TraesCS5A01G010900 chr7D 89.940 497 42 7 1871 2365 609899513 609899023 3.360000e-178 634.0
7 TraesCS5A01G010900 chr6A 89.047 493 52 2 1871 2361 572809691 572810183 5.670000e-171 610.0
8 TraesCS5A01G010900 chr2D 88.845 502 46 5 1871 2365 636041952 636041454 2.040000e-170 608.0
9 TraesCS5A01G010900 chr2B 87.649 502 55 6 1871 2365 470500765 470501266 5.750000e-161 577.0
10 TraesCS5A01G010900 chr2B 87.425 501 57 3 1871 2365 28735079 28734579 2.680000e-159 571.0
11 TraesCS5A01G010900 chr1B 86.931 505 56 7 1871 2365 633142688 633143192 2.080000e-155 558.0
12 TraesCS5A01G010900 chr1A 86.905 504 55 7 1871 2365 529257843 529258344 2.690000e-154 555.0
13 TraesCS5A01G010900 chr1A 86.905 504 52 8 1871 2365 280476655 280477153 9.690000e-154 553.0
14 TraesCS5A01G010900 chr4B 85.417 96 11 2 1660 1754 540718153 540718060 1.960000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G010900 chr5A 7166768 7169166 2398 False 4431.0 4431 100.000 1 2399 1 chr5A.!!$F1 2398
1 TraesCS5A01G010900 chr5B 9243060 9244455 1395 False 628.5 1151 85.725 370 1866 2 chr5B.!!$F1 1496
2 TraesCS5A01G010900 chr5D 9068015 9069128 1113 False 1096.0 1096 84.675 370 1515 1 chr5D.!!$F1 1145
3 TraesCS5A01G010900 chr3B 726621113 726622121 1008 False 857.0 857 82.726 370 1399 1 chr3B.!!$F2 1029
4 TraesCS5A01G010900 chr2B 470500765 470501266 501 False 577.0 577 87.649 1871 2365 1 chr2B.!!$F1 494
5 TraesCS5A01G010900 chr2B 28734579 28735079 500 True 571.0 571 87.425 1871 2365 1 chr2B.!!$R1 494
6 TraesCS5A01G010900 chr1B 633142688 633143192 504 False 558.0 558 86.931 1871 2365 1 chr1B.!!$F1 494
7 TraesCS5A01G010900 chr1A 529257843 529258344 501 False 555.0 555 86.905 1871 2365 1 chr1A.!!$F2 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.032952 GCGTTATGCCAGGTCCGATA 59.967 55.0 0.0 0.0 37.76 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 1922 0.179197 CGAGTCGTGACGCACTGTAT 60.179 55.0 13.18 0.0 36.2 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.789012 AGATTGATTTTGATGGTGCGTT 57.211 36.364 0.00 0.00 0.00 4.84
22 23 5.895636 AGATTGATTTTGATGGTGCGTTA 57.104 34.783 0.00 0.00 0.00 3.18
23 24 6.455360 AGATTGATTTTGATGGTGCGTTAT 57.545 33.333 0.00 0.00 0.00 1.89
24 25 6.267817 AGATTGATTTTGATGGTGCGTTATG 58.732 36.000 0.00 0.00 0.00 1.90
25 26 3.768406 TGATTTTGATGGTGCGTTATGC 58.232 40.909 0.00 0.00 46.70 3.14
26 27 2.645730 TTTTGATGGTGCGTTATGCC 57.354 45.000 0.00 0.00 45.60 4.40
27 28 1.539157 TTTGATGGTGCGTTATGCCA 58.461 45.000 0.00 0.00 45.60 4.92
28 29 1.093972 TTGATGGTGCGTTATGCCAG 58.906 50.000 0.00 0.00 45.60 4.85
29 30 0.747644 TGATGGTGCGTTATGCCAGG 60.748 55.000 0.00 0.00 45.60 4.45
30 31 0.748005 GATGGTGCGTTATGCCAGGT 60.748 55.000 0.00 0.00 45.60 4.00
31 32 0.748005 ATGGTGCGTTATGCCAGGTC 60.748 55.000 0.00 0.00 45.60 3.85
32 33 2.112815 GGTGCGTTATGCCAGGTCC 61.113 63.158 0.00 0.00 45.60 4.46
33 34 2.125310 TGCGTTATGCCAGGTCCG 60.125 61.111 0.00 0.00 45.60 4.79
34 35 2.185867 GCGTTATGCCAGGTCCGA 59.814 61.111 0.00 0.00 37.76 4.55
35 36 1.227556 GCGTTATGCCAGGTCCGAT 60.228 57.895 0.00 0.00 37.76 4.18
36 37 0.032952 GCGTTATGCCAGGTCCGATA 59.967 55.000 0.00 0.00 37.76 2.92
37 38 1.337823 GCGTTATGCCAGGTCCGATAT 60.338 52.381 0.00 0.00 37.76 1.63
38 39 2.337583 CGTTATGCCAGGTCCGATATG 58.662 52.381 0.00 0.00 0.00 1.78
39 40 2.029380 CGTTATGCCAGGTCCGATATGA 60.029 50.000 0.00 0.00 0.00 2.15
40 41 3.368427 CGTTATGCCAGGTCCGATATGAT 60.368 47.826 0.00 0.00 0.00 2.45
41 42 2.775911 ATGCCAGGTCCGATATGATG 57.224 50.000 0.00 0.00 0.00 3.07
42 43 0.686789 TGCCAGGTCCGATATGATGG 59.313 55.000 0.00 0.00 0.00 3.51
43 44 0.036010 GCCAGGTCCGATATGATGGG 60.036 60.000 0.00 0.00 0.00 4.00
44 45 1.352083 CCAGGTCCGATATGATGGGT 58.648 55.000 0.00 0.00 0.00 4.51
45 46 1.002430 CCAGGTCCGATATGATGGGTG 59.998 57.143 0.00 0.00 0.00 4.61
46 47 0.687354 AGGTCCGATATGATGGGTGC 59.313 55.000 0.00 0.00 0.00 5.01
47 48 0.670546 GGTCCGATATGATGGGTGCG 60.671 60.000 0.00 0.00 0.00 5.34
48 49 0.033504 GTCCGATATGATGGGTGCGT 59.966 55.000 0.00 0.00 0.00 5.24
49 50 0.756294 TCCGATATGATGGGTGCGTT 59.244 50.000 0.00 0.00 0.00 4.84
50 51 1.148310 CCGATATGATGGGTGCGTTC 58.852 55.000 0.00 0.00 0.00 3.95
51 52 1.148310 CGATATGATGGGTGCGTTCC 58.852 55.000 0.00 0.00 0.00 3.62
52 53 1.540146 CGATATGATGGGTGCGTTCCA 60.540 52.381 0.00 0.00 38.82 3.53
53 54 2.146342 GATATGATGGGTGCGTTCCAG 58.854 52.381 0.00 0.00 37.75 3.86
54 55 0.463654 TATGATGGGTGCGTTCCAGC 60.464 55.000 1.77 1.77 40.76 4.85
55 56 3.499737 GATGGGTGCGTTCCAGCG 61.500 66.667 0.00 0.00 42.82 5.18
56 57 4.329545 ATGGGTGCGTTCCAGCGT 62.330 61.111 0.00 0.00 42.82 5.07
59 60 3.712881 GGTGCGTTCCAGCGTGTC 61.713 66.667 0.00 0.00 40.67 3.67
60 61 3.712881 GTGCGTTCCAGCGTGTCC 61.713 66.667 0.00 0.00 40.67 4.02
72 73 3.717294 GTGTCCGGGCCTCCACAT 61.717 66.667 2.12 0.00 0.00 3.21
73 74 2.039787 TGTCCGGGCCTCCACATA 59.960 61.111 2.12 0.00 0.00 2.29
74 75 2.363975 TGTCCGGGCCTCCACATAC 61.364 63.158 2.12 0.00 0.00 2.39
75 76 3.151710 TCCGGGCCTCCACATACG 61.152 66.667 0.84 0.00 0.00 3.06
76 77 4.235762 CCGGGCCTCCACATACGG 62.236 72.222 0.84 0.00 35.01 4.02
77 78 3.151710 CGGGCCTCCACATACGGA 61.152 66.667 0.84 0.00 0.00 4.69
78 79 2.504519 GGGCCTCCACATACGGAC 59.495 66.667 0.84 0.00 0.00 4.79
79 80 2.504519 GGCCTCCACATACGGACC 59.495 66.667 0.00 0.00 0.00 4.46
80 81 2.504519 GCCTCCACATACGGACCC 59.495 66.667 0.00 0.00 0.00 4.46
81 82 2.363975 GCCTCCACATACGGACCCA 61.364 63.158 0.00 0.00 0.00 4.51
82 83 1.823295 CCTCCACATACGGACCCAG 59.177 63.158 0.00 0.00 0.00 4.45
83 84 0.686441 CCTCCACATACGGACCCAGA 60.686 60.000 0.00 0.00 0.00 3.86
84 85 1.414158 CTCCACATACGGACCCAGAT 58.586 55.000 0.00 0.00 0.00 2.90
85 86 2.594131 CTCCACATACGGACCCAGATA 58.406 52.381 0.00 0.00 0.00 1.98
86 87 3.165875 CTCCACATACGGACCCAGATAT 58.834 50.000 0.00 0.00 0.00 1.63
87 88 2.897326 TCCACATACGGACCCAGATATG 59.103 50.000 0.00 0.00 0.00 1.78
88 89 2.028112 CCACATACGGACCCAGATATGG 60.028 54.545 0.00 0.00 30.71 2.74
100 101 5.619132 CCCAGATATGGGCTGAAATTTTT 57.381 39.130 13.65 0.00 42.99 1.94
116 117 4.309050 TTTTTGGCGGGGAGGGGG 62.309 66.667 0.00 0.00 0.00 5.40
140 141 0.608640 GGACAGCCGGATGTATAGGG 59.391 60.000 27.93 0.00 32.25 3.53
141 142 0.037232 GACAGCCGGATGTATAGGGC 60.037 60.000 27.93 8.44 45.91 5.19
142 143 1.296715 CAGCCGGATGTATAGGGCC 59.703 63.158 12.68 0.00 46.75 5.80
143 144 2.264794 GCCGGATGTATAGGGCCG 59.735 66.667 5.05 0.00 43.20 6.13
145 146 3.787394 CGGATGTATAGGGCCGGT 58.213 61.111 1.90 0.00 40.08 5.28
146 147 2.055299 CGGATGTATAGGGCCGGTT 58.945 57.895 1.90 0.00 40.08 4.44
147 148 0.395312 CGGATGTATAGGGCCGGTTT 59.605 55.000 1.90 0.00 40.08 3.27
148 149 1.619827 CGGATGTATAGGGCCGGTTTA 59.380 52.381 1.90 0.00 40.08 2.01
149 150 2.037511 CGGATGTATAGGGCCGGTTTAA 59.962 50.000 1.90 0.00 40.08 1.52
150 151 3.494749 CGGATGTATAGGGCCGGTTTAAA 60.495 47.826 1.90 0.00 40.08 1.52
151 152 4.070009 GGATGTATAGGGCCGGTTTAAAG 58.930 47.826 1.90 0.00 0.00 1.85
152 153 4.202388 GGATGTATAGGGCCGGTTTAAAGA 60.202 45.833 1.90 0.00 0.00 2.52
153 154 4.411256 TGTATAGGGCCGGTTTAAAGAG 57.589 45.455 1.90 0.00 0.00 2.85
154 155 3.135167 TGTATAGGGCCGGTTTAAAGAGG 59.865 47.826 1.90 4.87 0.00 3.69
157 158 4.408378 GCCGGTTTAAAGAGGCCA 57.592 55.556 18.36 0.00 43.54 5.36
158 159 2.180674 GCCGGTTTAAAGAGGCCAG 58.819 57.895 18.36 0.00 43.54 4.85
159 160 0.608308 GCCGGTTTAAAGAGGCCAGT 60.608 55.000 18.36 0.00 43.54 4.00
160 161 1.905637 CCGGTTTAAAGAGGCCAGTT 58.094 50.000 5.01 0.00 0.00 3.16
161 162 1.539827 CCGGTTTAAAGAGGCCAGTTG 59.460 52.381 5.01 0.00 0.00 3.16
162 163 1.539827 CGGTTTAAAGAGGCCAGTTGG 59.460 52.381 5.01 0.00 38.53 3.77
163 164 2.812613 CGGTTTAAAGAGGCCAGTTGGA 60.813 50.000 5.01 0.00 37.39 3.53
164 165 3.431415 GGTTTAAAGAGGCCAGTTGGAT 58.569 45.455 5.01 0.00 37.39 3.41
165 166 3.193479 GGTTTAAAGAGGCCAGTTGGATG 59.807 47.826 5.01 0.00 37.39 3.51
166 167 4.079253 GTTTAAAGAGGCCAGTTGGATGA 58.921 43.478 5.01 0.00 37.39 2.92
167 168 2.206576 AAAGAGGCCAGTTGGATGAC 57.793 50.000 5.01 0.00 37.39 3.06
168 169 0.036010 AAGAGGCCAGTTGGATGACG 60.036 55.000 5.01 0.00 37.39 4.35
169 170 0.904865 AGAGGCCAGTTGGATGACGA 60.905 55.000 5.01 0.00 37.39 4.20
170 171 0.179000 GAGGCCAGTTGGATGACGAT 59.821 55.000 5.01 0.00 37.39 3.73
171 172 0.620556 AGGCCAGTTGGATGACGATT 59.379 50.000 5.01 0.00 37.39 3.34
172 173 1.004745 AGGCCAGTTGGATGACGATTT 59.995 47.619 5.01 0.00 37.39 2.17
173 174 1.401905 GGCCAGTTGGATGACGATTTC 59.598 52.381 0.00 0.00 37.39 2.17
174 175 2.083774 GCCAGTTGGATGACGATTTCA 58.916 47.619 1.45 0.00 37.39 2.69
176 177 3.488047 GCCAGTTGGATGACGATTTCATG 60.488 47.826 1.45 0.00 45.67 3.07
177 178 3.065786 CCAGTTGGATGACGATTTCATGG 59.934 47.826 0.00 0.00 45.67 3.66
178 179 2.684881 AGTTGGATGACGATTTCATGGC 59.315 45.455 0.00 0.00 45.67 4.40
179 180 1.679139 TGGATGACGATTTCATGGCC 58.321 50.000 0.00 0.00 45.67 5.36
180 181 0.588252 GGATGACGATTTCATGGCCG 59.412 55.000 0.00 0.00 45.67 6.13
181 182 0.588252 GATGACGATTTCATGGCCGG 59.412 55.000 0.00 0.00 45.67 6.13
182 183 0.107214 ATGACGATTTCATGGCCGGT 60.107 50.000 1.90 0.00 43.87 5.28
183 184 0.742990 TGACGATTTCATGGCCGGTC 60.743 55.000 0.00 0.00 0.00 4.79
184 185 0.742990 GACGATTTCATGGCCGGTCA 60.743 55.000 13.22 13.22 0.00 4.02
185 186 0.107214 ACGATTTCATGGCCGGTCAT 60.107 50.000 17.87 17.87 0.00 3.06
186 187 1.024271 CGATTTCATGGCCGGTCATT 58.976 50.000 21.50 4.30 0.00 2.57
187 188 1.268692 CGATTTCATGGCCGGTCATTG 60.269 52.381 21.50 15.11 0.00 2.82
188 189 2.023673 GATTTCATGGCCGGTCATTGA 58.976 47.619 21.50 17.25 0.00 2.57
189 190 1.173043 TTTCATGGCCGGTCATTGAC 58.827 50.000 21.50 8.34 0.00 3.18
198 199 3.890674 GTCATTGACCTGACCGCC 58.109 61.111 5.44 0.00 39.72 6.13
199 200 1.003839 GTCATTGACCTGACCGCCA 60.004 57.895 5.44 0.00 39.72 5.69
200 201 1.003839 TCATTGACCTGACCGCCAC 60.004 57.895 0.00 0.00 0.00 5.01
201 202 2.047274 ATTGACCTGACCGCCACG 60.047 61.111 0.00 0.00 0.00 4.94
202 203 2.879233 ATTGACCTGACCGCCACGT 61.879 57.895 0.00 0.00 0.00 4.49
203 204 1.537814 ATTGACCTGACCGCCACGTA 61.538 55.000 0.00 0.00 0.00 3.57
204 205 1.537814 TTGACCTGACCGCCACGTAT 61.538 55.000 0.00 0.00 0.00 3.06
205 206 0.680601 TGACCTGACCGCCACGTATA 60.681 55.000 0.00 0.00 0.00 1.47
206 207 0.672342 GACCTGACCGCCACGTATAT 59.328 55.000 0.00 0.00 0.00 0.86
207 208 1.881973 GACCTGACCGCCACGTATATA 59.118 52.381 0.00 0.00 0.00 0.86
208 209 1.884579 ACCTGACCGCCACGTATATAG 59.115 52.381 0.00 0.00 0.00 1.31
209 210 2.156917 CCTGACCGCCACGTATATAGA 58.843 52.381 0.00 0.00 0.00 1.98
210 211 2.161808 CCTGACCGCCACGTATATAGAG 59.838 54.545 0.00 0.00 0.00 2.43
211 212 3.072211 CTGACCGCCACGTATATAGAGA 58.928 50.000 0.00 0.00 0.00 3.10
212 213 3.682696 TGACCGCCACGTATATAGAGAT 58.317 45.455 0.00 0.00 0.00 2.75
213 214 3.439129 TGACCGCCACGTATATAGAGATG 59.561 47.826 0.00 0.00 0.00 2.90
214 215 3.682696 ACCGCCACGTATATAGAGATGA 58.317 45.455 0.00 0.00 0.00 2.92
215 216 4.270834 ACCGCCACGTATATAGAGATGAT 58.729 43.478 0.00 0.00 0.00 2.45
216 217 5.434408 ACCGCCACGTATATAGAGATGATA 58.566 41.667 0.00 0.00 0.00 2.15
217 218 5.296283 ACCGCCACGTATATAGAGATGATAC 59.704 44.000 0.00 0.00 0.00 2.24
218 219 5.296035 CCGCCACGTATATAGAGATGATACA 59.704 44.000 0.00 0.00 0.00 2.29
219 220 6.183360 CCGCCACGTATATAGAGATGATACAA 60.183 42.308 0.00 0.00 0.00 2.41
220 221 7.418408 CGCCACGTATATAGAGATGATACAAT 58.582 38.462 0.00 0.00 0.00 2.71
221 222 7.377131 CGCCACGTATATAGAGATGATACAATG 59.623 40.741 0.00 0.00 0.00 2.82
222 223 7.649705 GCCACGTATATAGAGATGATACAATGG 59.350 40.741 0.00 0.00 36.22 3.16
223 224 8.138074 CCACGTATATAGAGATGATACAATGGG 58.862 40.741 0.00 0.00 32.89 4.00
224 225 8.687242 CACGTATATAGAGATGATACAATGGGT 58.313 37.037 0.00 0.00 0.00 4.51
225 226 8.904834 ACGTATATAGAGATGATACAATGGGTC 58.095 37.037 0.00 0.00 0.00 4.46
226 227 8.353684 CGTATATAGAGATGATACAATGGGTCC 58.646 40.741 0.00 0.00 0.00 4.46
227 228 5.667539 ATAGAGATGATACAATGGGTCCG 57.332 43.478 0.00 0.00 0.00 4.79
228 229 3.576861 AGAGATGATACAATGGGTCCGA 58.423 45.455 0.00 0.00 0.00 4.55
229 230 4.163427 AGAGATGATACAATGGGTCCGAT 58.837 43.478 0.00 0.00 0.00 4.18
230 231 4.221703 AGAGATGATACAATGGGTCCGATC 59.778 45.833 0.00 0.00 0.00 3.69
231 232 2.812358 TGATACAATGGGTCCGATCG 57.188 50.000 8.51 8.51 0.00 3.69
232 233 2.036387 TGATACAATGGGTCCGATCGT 58.964 47.619 15.09 0.00 0.00 3.73
233 234 3.224269 TGATACAATGGGTCCGATCGTA 58.776 45.455 15.09 0.00 0.00 3.43
234 235 3.254903 TGATACAATGGGTCCGATCGTAG 59.745 47.826 15.09 0.00 0.00 3.51
235 236 1.771565 ACAATGGGTCCGATCGTAGA 58.228 50.000 15.09 1.76 45.75 2.59
236 237 2.317040 ACAATGGGTCCGATCGTAGAT 58.683 47.619 15.09 0.00 45.12 1.98
237 238 2.035961 ACAATGGGTCCGATCGTAGATG 59.964 50.000 15.09 6.19 45.12 2.90
238 239 0.603569 ATGGGTCCGATCGTAGATGC 59.396 55.000 15.09 0.00 45.12 3.91
239 240 0.467474 TGGGTCCGATCGTAGATGCT 60.467 55.000 15.09 0.00 45.12 3.79
240 241 0.241481 GGGTCCGATCGTAGATGCTC 59.759 60.000 15.09 0.00 45.12 4.26
241 242 1.240256 GGTCCGATCGTAGATGCTCT 58.760 55.000 15.09 0.00 45.12 4.09
242 243 2.424557 GGTCCGATCGTAGATGCTCTA 58.575 52.381 15.09 0.00 45.12 2.43
243 244 2.812591 GGTCCGATCGTAGATGCTCTAA 59.187 50.000 15.09 0.00 45.12 2.10
244 245 3.365164 GGTCCGATCGTAGATGCTCTAAC 60.365 52.174 15.09 0.00 45.12 2.34
245 246 3.499157 GTCCGATCGTAGATGCTCTAACT 59.501 47.826 15.09 0.00 45.12 2.24
246 247 4.023878 GTCCGATCGTAGATGCTCTAACTT 60.024 45.833 15.09 0.00 45.12 2.66
247 248 4.023963 TCCGATCGTAGATGCTCTAACTTG 60.024 45.833 15.09 0.00 45.12 3.16
248 249 4.222886 CGATCGTAGATGCTCTAACTTGG 58.777 47.826 7.03 0.00 45.12 3.61
249 250 4.261238 CGATCGTAGATGCTCTAACTTGGT 60.261 45.833 7.03 0.00 45.12 3.67
250 251 5.049612 CGATCGTAGATGCTCTAACTTGGTA 60.050 44.000 7.03 0.00 45.12 3.25
251 252 5.496133 TCGTAGATGCTCTAACTTGGTAC 57.504 43.478 0.00 0.00 29.58 3.34
252 253 4.337555 TCGTAGATGCTCTAACTTGGTACC 59.662 45.833 4.43 4.43 29.58 3.34
253 254 3.802948 AGATGCTCTAACTTGGTACCG 57.197 47.619 7.57 0.00 0.00 4.02
254 255 3.097614 AGATGCTCTAACTTGGTACCGT 58.902 45.455 7.57 0.00 0.00 4.83
255 256 4.275810 AGATGCTCTAACTTGGTACCGTA 58.724 43.478 7.57 0.00 0.00 4.02
256 257 3.855689 TGCTCTAACTTGGTACCGTAC 57.144 47.619 7.57 0.00 0.00 3.67
257 258 3.156293 TGCTCTAACTTGGTACCGTACA 58.844 45.455 7.57 0.00 0.00 2.90
258 259 3.765511 TGCTCTAACTTGGTACCGTACAT 59.234 43.478 7.57 0.00 0.00 2.29
259 260 4.949238 TGCTCTAACTTGGTACCGTACATA 59.051 41.667 7.57 0.00 0.00 2.29
260 261 5.163622 TGCTCTAACTTGGTACCGTACATAC 60.164 44.000 7.57 0.00 0.00 2.39
261 262 5.067023 GCTCTAACTTGGTACCGTACATACT 59.933 44.000 7.57 0.00 0.00 2.12
262 263 6.405176 GCTCTAACTTGGTACCGTACATACTT 60.405 42.308 7.57 0.00 0.00 2.24
263 264 7.201732 GCTCTAACTTGGTACCGTACATACTTA 60.202 40.741 7.57 0.96 0.00 2.24
264 265 8.752005 TCTAACTTGGTACCGTACATACTTAT 57.248 34.615 7.57 0.00 0.00 1.73
265 266 9.189156 TCTAACTTGGTACCGTACATACTTATT 57.811 33.333 7.57 0.00 0.00 1.40
266 267 9.807649 CTAACTTGGTACCGTACATACTTATTT 57.192 33.333 7.57 0.00 0.00 1.40
268 269 9.506018 AACTTGGTACCGTACATACTTATTTTT 57.494 29.630 7.57 0.00 0.00 1.94
291 292 9.612066 TTTTTATTTCTCTTTTGTGAAAGCCAT 57.388 25.926 0.00 0.00 42.66 4.40
293 294 9.691362 TTTATTTCTCTTTTGTGAAAGCCATAC 57.309 29.630 0.00 0.00 42.66 2.39
294 295 6.707440 TTTCTCTTTTGTGAAAGCCATACA 57.293 33.333 0.00 0.00 41.63 2.29
295 296 6.899393 TTCTCTTTTGTGAAAGCCATACAT 57.101 33.333 0.00 0.00 41.63 2.29
296 297 7.994425 TTCTCTTTTGTGAAAGCCATACATA 57.006 32.000 0.00 0.00 41.63 2.29
297 298 7.377766 TCTCTTTTGTGAAAGCCATACATAC 57.622 36.000 0.00 0.00 41.63 2.39
298 299 7.168219 TCTCTTTTGTGAAAGCCATACATACT 58.832 34.615 0.00 0.00 41.63 2.12
299 300 7.665559 TCTCTTTTGTGAAAGCCATACATACTT 59.334 33.333 0.00 0.00 41.63 2.24
300 301 8.856153 TCTTTTGTGAAAGCCATACATACTTA 57.144 30.769 0.00 0.00 41.63 2.24
301 302 9.461312 TCTTTTGTGAAAGCCATACATACTTAT 57.539 29.630 0.00 0.00 41.63 1.73
303 304 9.853555 TTTTGTGAAAGCCATACATACTTATTG 57.146 29.630 0.00 0.00 0.00 1.90
304 305 8.574251 TTGTGAAAGCCATACATACTTATTGT 57.426 30.769 0.00 0.00 0.00 2.71
305 306 7.984391 TGTGAAAGCCATACATACTTATTGTG 58.016 34.615 0.00 0.00 0.00 3.33
306 307 7.609918 TGTGAAAGCCATACATACTTATTGTGT 59.390 33.333 0.00 0.00 0.00 3.72
307 308 9.104965 GTGAAAGCCATACATACTTATTGTGTA 57.895 33.333 0.00 0.00 33.35 2.90
308 309 9.104965 TGAAAGCCATACATACTTATTGTGTAC 57.895 33.333 0.00 0.00 31.79 2.90
309 310 7.709269 AAGCCATACATACTTATTGTGTACG 57.291 36.000 0.00 0.00 31.79 3.67
310 311 6.812998 AGCCATACATACTTATTGTGTACGT 58.187 36.000 0.00 0.00 31.79 3.57
311 312 7.270047 AGCCATACATACTTATTGTGTACGTT 58.730 34.615 0.00 0.00 31.79 3.99
312 313 7.223971 AGCCATACATACTTATTGTGTACGTTG 59.776 37.037 0.00 0.00 31.79 4.10
313 314 7.517734 GCCATACATACTTATTGTGTACGTTGG 60.518 40.741 0.00 0.00 31.79 3.77
314 315 7.493320 CCATACATACTTATTGTGTACGTTGGT 59.507 37.037 0.00 0.00 31.79 3.67
315 316 9.518906 CATACATACTTATTGTGTACGTTGGTA 57.481 33.333 0.00 0.00 31.79 3.25
316 317 9.740239 ATACATACTTATTGTGTACGTTGGTAG 57.260 33.333 0.00 0.00 31.79 3.18
317 318 7.605449 ACATACTTATTGTGTACGTTGGTAGT 58.395 34.615 0.00 0.00 0.00 2.73
318 319 8.090214 ACATACTTATTGTGTACGTTGGTAGTT 58.910 33.333 0.00 0.00 0.00 2.24
319 320 8.928733 CATACTTATTGTGTACGTTGGTAGTTT 58.071 33.333 0.00 0.00 0.00 2.66
321 322 8.298030 ACTTATTGTGTACGTTGGTAGTTTAC 57.702 34.615 0.00 0.00 0.00 2.01
322 323 8.143835 ACTTATTGTGTACGTTGGTAGTTTACT 58.856 33.333 0.00 0.00 0.00 2.24
323 324 6.774354 ATTGTGTACGTTGGTAGTTTACTG 57.226 37.500 0.00 0.00 0.00 2.74
324 325 5.261209 TGTGTACGTTGGTAGTTTACTGT 57.739 39.130 0.00 0.00 0.00 3.55
325 326 5.280945 TGTGTACGTTGGTAGTTTACTGTC 58.719 41.667 0.00 0.00 0.00 3.51
326 327 4.681483 GTGTACGTTGGTAGTTTACTGTCC 59.319 45.833 0.00 0.00 0.00 4.02
327 328 3.391506 ACGTTGGTAGTTTACTGTCCC 57.608 47.619 0.00 0.00 0.00 4.46
328 329 2.699846 ACGTTGGTAGTTTACTGTCCCA 59.300 45.455 0.00 0.00 0.00 4.37
329 330 3.325716 ACGTTGGTAGTTTACTGTCCCAT 59.674 43.478 0.00 0.00 0.00 4.00
330 331 4.202388 ACGTTGGTAGTTTACTGTCCCATT 60.202 41.667 0.00 0.00 0.00 3.16
331 332 4.390909 CGTTGGTAGTTTACTGTCCCATTC 59.609 45.833 0.00 0.00 0.00 2.67
332 333 4.196626 TGGTAGTTTACTGTCCCATTCG 57.803 45.455 0.00 0.00 0.00 3.34
333 334 3.579586 TGGTAGTTTACTGTCCCATTCGT 59.420 43.478 0.00 0.00 0.00 3.85
334 335 4.771577 TGGTAGTTTACTGTCCCATTCGTA 59.228 41.667 0.00 0.00 0.00 3.43
335 336 5.105635 TGGTAGTTTACTGTCCCATTCGTAG 60.106 44.000 0.00 0.00 0.00 3.51
336 337 3.858247 AGTTTACTGTCCCATTCGTAGC 58.142 45.455 0.00 0.00 0.00 3.58
337 338 2.572191 TTACTGTCCCATTCGTAGCG 57.428 50.000 0.00 0.00 0.00 4.26
338 339 0.742505 TACTGTCCCATTCGTAGCGG 59.257 55.000 0.00 0.00 0.00 5.52
339 340 1.255667 ACTGTCCCATTCGTAGCGGT 61.256 55.000 0.00 0.00 0.00 5.68
340 341 0.108329 CTGTCCCATTCGTAGCGGTT 60.108 55.000 0.00 0.00 0.00 4.44
341 342 0.108520 TGTCCCATTCGTAGCGGTTC 60.109 55.000 0.00 0.00 0.00 3.62
342 343 0.175073 GTCCCATTCGTAGCGGTTCT 59.825 55.000 0.00 0.00 0.00 3.01
343 344 0.458669 TCCCATTCGTAGCGGTTCTC 59.541 55.000 0.00 0.00 0.00 2.87
344 345 0.870307 CCCATTCGTAGCGGTTCTCG 60.870 60.000 0.00 0.00 42.76 4.04
345 346 0.179145 CCATTCGTAGCGGTTCTCGT 60.179 55.000 0.00 0.00 41.72 4.18
346 347 1.625616 CATTCGTAGCGGTTCTCGTT 58.374 50.000 0.00 0.00 41.72 3.85
347 348 1.320555 CATTCGTAGCGGTTCTCGTTG 59.679 52.381 0.00 0.00 41.72 4.10
348 349 1.005294 TTCGTAGCGGTTCTCGTTGC 61.005 55.000 0.00 0.00 41.72 4.17
349 350 3.070060 GTAGCGGTTCTCGTTGCG 58.930 61.111 0.00 0.00 41.72 4.85
350 351 2.126228 TAGCGGTTCTCGTTGCGG 60.126 61.111 0.00 0.00 41.72 5.69
351 352 2.628696 TAGCGGTTCTCGTTGCGGA 61.629 57.895 0.00 0.00 41.72 5.54
352 353 1.940883 TAGCGGTTCTCGTTGCGGAT 61.941 55.000 0.00 0.00 41.72 4.18
353 354 1.517694 GCGGTTCTCGTTGCGGATA 60.518 57.895 0.00 0.00 41.72 2.59
354 355 1.480219 GCGGTTCTCGTTGCGGATAG 61.480 60.000 0.00 0.00 41.72 2.08
368 369 4.317671 GCGGATAGCTAGGTAGAACAAA 57.682 45.455 7.83 0.00 44.04 2.83
383 384 7.665974 AGGTAGAACAAAATAGGAACAAGAAGG 59.334 37.037 0.00 0.00 0.00 3.46
385 386 7.898014 AGAACAAAATAGGAACAAGAAGGTT 57.102 32.000 0.00 0.00 0.00 3.50
390 391 9.416284 ACAAAATAGGAACAAGAAGGTTAAGAA 57.584 29.630 0.00 0.00 0.00 2.52
406 407 7.662897 AGGTTAAGAAATGGATCGATCTAGAC 58.337 38.462 23.96 13.34 0.00 2.59
409 410 5.365403 AGAAATGGATCGATCTAGACGAC 57.635 43.478 23.96 6.97 42.37 4.34
414 415 2.994578 GGATCGATCTAGACGACGATGA 59.005 50.000 25.18 6.47 43.72 2.92
415 416 3.181528 GGATCGATCTAGACGACGATGAC 60.182 52.174 25.18 17.52 43.72 3.06
417 418 1.718983 CGATCTAGACGACGATGACGC 60.719 57.143 0.00 0.00 43.96 5.19
418 419 1.260825 GATCTAGACGACGATGACGCA 59.739 52.381 0.00 0.00 43.96 5.24
419 420 0.372679 TCTAGACGACGATGACGCAC 59.627 55.000 0.00 0.00 43.96 5.34
420 421 0.919873 CTAGACGACGATGACGCACG 60.920 60.000 0.00 0.00 43.96 5.34
422 423 2.862436 ACGACGATGACGCACGTA 59.138 55.556 0.00 0.00 46.40 3.57
424 425 1.933041 CGACGATGACGCACGTAGG 60.933 63.158 0.00 0.00 42.74 3.18
427 428 2.573341 ACGATGACGCACGTAGGACG 62.573 60.000 0.00 3.14 44.94 4.79
479 480 3.499737 CGTCGATGGCAGCAACCC 61.500 66.667 2.73 0.00 0.00 4.11
480 481 2.045926 GTCGATGGCAGCAACCCT 60.046 61.111 2.73 0.00 0.00 4.34
495 497 2.728817 CCTGGATCGTAGGTCGGC 59.271 66.667 6.50 0.00 40.32 5.54
496 498 2.331805 CTGGATCGTAGGTCGGCG 59.668 66.667 0.00 0.00 40.32 6.46
497 499 2.124612 TGGATCGTAGGTCGGCGA 60.125 61.111 4.99 4.99 41.50 5.54
519 521 1.757699 GTCGATCCAAGCTAGGAAGGT 59.242 52.381 0.00 0.00 41.92 3.50
570 575 3.890936 AAGCAGCTGACGCAGACCC 62.891 63.158 20.43 0.00 39.10 4.46
590 595 7.881775 GACCCCAAGTCTCAAACAAATATAT 57.118 36.000 0.00 0.00 42.69 0.86
591 596 8.293699 GACCCCAAGTCTCAAACAAATATATT 57.706 34.615 0.00 0.00 42.69 1.28
592 597 8.293699 ACCCCAAGTCTCAAACAAATATATTC 57.706 34.615 0.00 0.00 0.00 1.75
593 598 7.893302 ACCCCAAGTCTCAAACAAATATATTCA 59.107 33.333 0.00 0.00 0.00 2.57
626 631 7.851228 TCCACCGATAGATAGATATTTGCATT 58.149 34.615 0.00 0.00 39.76 3.56
642 647 2.063979 ATTGCATGCATGGCTGGCT 61.064 52.632 27.34 0.00 31.78 4.75
856 863 3.314635 CGACCGCTATATATACCTCCCAC 59.685 52.174 0.00 0.00 0.00 4.61
860 867 3.297736 GCTATATATACCTCCCACGCCT 58.702 50.000 0.00 0.00 0.00 5.52
863 870 0.544595 ATATACCTCCCACGCCTCCC 60.545 60.000 0.00 0.00 0.00 4.30
885 892 2.236644 CCCTCATCTCCATGCTCCATAG 59.763 54.545 0.00 0.00 0.00 2.23
886 893 2.905085 CCTCATCTCCATGCTCCATAGT 59.095 50.000 0.00 0.00 0.00 2.12
888 895 3.833650 CTCATCTCCATGCTCCATAGTCT 59.166 47.826 0.00 0.00 0.00 3.24
889 896 3.577415 TCATCTCCATGCTCCATAGTCTG 59.423 47.826 0.00 0.00 0.00 3.51
890 897 1.690893 TCTCCATGCTCCATAGTCTGC 59.309 52.381 0.00 0.00 0.00 4.26
891 898 0.761187 TCCATGCTCCATAGTCTGCC 59.239 55.000 0.00 0.00 0.00 4.85
892 899 0.250640 CCATGCTCCATAGTCTGCCC 60.251 60.000 0.00 0.00 0.00 5.36
893 900 0.250640 CATGCTCCATAGTCTGCCCC 60.251 60.000 0.00 0.00 0.00 5.80
894 901 1.762522 ATGCTCCATAGTCTGCCCCG 61.763 60.000 0.00 0.00 0.00 5.73
895 902 2.423446 CTCCATAGTCTGCCCCGC 59.577 66.667 0.00 0.00 0.00 6.13
896 903 2.041922 TCCATAGTCTGCCCCGCT 60.042 61.111 0.00 0.00 0.00 5.52
897 904 2.093537 CTCCATAGTCTGCCCCGCTC 62.094 65.000 0.00 0.00 0.00 5.03
898 905 2.136878 CCATAGTCTGCCCCGCTCT 61.137 63.158 0.00 0.00 0.00 4.09
899 906 1.068753 CATAGTCTGCCCCGCTCTG 59.931 63.158 0.00 0.00 0.00 3.35
900 907 1.381872 ATAGTCTGCCCCGCTCTGT 60.382 57.895 0.00 0.00 0.00 3.41
934 953 1.610102 GCTCTGCTTCTTCTTCCTGCA 60.610 52.381 0.00 0.00 0.00 4.41
935 954 2.775890 CTCTGCTTCTTCTTCCTGCAA 58.224 47.619 0.00 0.00 33.07 4.08
936 955 2.743126 CTCTGCTTCTTCTTCCTGCAAG 59.257 50.000 0.00 0.00 33.07 4.01
937 956 2.369860 TCTGCTTCTTCTTCCTGCAAGA 59.630 45.455 0.00 0.00 39.56 3.02
1420 1482 1.915769 ATAGCTCATCCTCCCGGCC 60.916 63.158 0.00 0.00 0.00 6.13
1462 1524 5.220739 GCTCTTGTATGTACATCCTTGCTTG 60.221 44.000 12.68 0.00 35.89 4.01
1491 1561 2.327940 GCGCGTGAACTGCAAAGT 59.672 55.556 8.43 0.00 0.00 2.66
1525 1595 5.635417 AACTCTTTCAATCTTGCCTTAGC 57.365 39.130 0.00 0.00 40.48 3.09
1536 1606 7.663905 TCAATCTTGCCTTAGCTTTAAGTGTAA 59.336 33.333 0.00 0.00 40.80 2.41
1561 1632 0.865769 CATAATACGCGTTGCTCCCC 59.134 55.000 20.78 0.00 0.00 4.81
1577 1648 2.237392 CTCCCCTTGTAACTTAGCAGCT 59.763 50.000 0.00 0.00 0.00 4.24
1605 1676 8.347771 CACATGATGTAATTACCAAGGATGAAG 58.652 37.037 13.01 0.00 0.00 3.02
1608 1679 6.159575 TGATGTAATTACCAAGGATGAAGGGA 59.840 38.462 13.01 0.00 0.00 4.20
1613 1684 3.491766 ACCAAGGATGAAGGGAGAGTA 57.508 47.619 0.00 0.00 0.00 2.59
1616 1687 2.761208 CAAGGATGAAGGGAGAGTACGT 59.239 50.000 0.00 0.00 0.00 3.57
1631 1702 3.128349 AGTACGTTTGCGATGAACAAGT 58.872 40.909 0.00 0.00 42.00 3.16
1632 1703 3.558418 AGTACGTTTGCGATGAACAAGTT 59.442 39.130 0.00 0.00 42.00 2.66
1634 1705 1.962547 CGTTTGCGATGAACAAGTTCG 59.037 47.619 8.28 0.00 40.40 3.95
1692 1765 9.790389 TTCACGAATACAAAAAGTTTGTGTATT 57.210 25.926 31.17 31.17 46.18 1.89
1721 1794 7.230747 TCATCCATAAAAGGAGAGAAACAACA 58.769 34.615 0.00 0.00 41.90 3.33
1732 1805 6.929606 AGGAGAGAAACAACAGTAACATACAC 59.070 38.462 0.00 0.00 0.00 2.90
1763 1836 2.672295 GGCACCACCCGGTATGAA 59.328 61.111 0.00 0.00 46.94 2.57
1764 1837 1.001887 GGCACCACCCGGTATGAAA 60.002 57.895 0.00 0.00 46.94 2.69
1787 1860 4.910195 AGATCATAAAGGAGTGCAACACA 58.090 39.130 0.00 0.00 41.43 3.72
1812 1885 3.321111 ACAAAACTCTCCTAGCTCGAACA 59.679 43.478 0.00 0.00 0.00 3.18
1817 1890 1.303888 TCCTAGCTCGAACACCGGT 60.304 57.895 0.00 0.00 39.14 5.28
1818 1891 0.896940 TCCTAGCTCGAACACCGGTT 60.897 55.000 2.97 0.00 40.76 4.44
1843 1916 5.525378 GGAAACGCAAAGAGATGAGATACAT 59.475 40.000 0.00 0.00 42.47 2.29
1844 1917 5.980698 AACGCAAAGAGATGAGATACATG 57.019 39.130 0.00 0.00 39.56 3.21
1847 1920 5.045872 CGCAAAGAGATGAGATACATGACA 58.954 41.667 0.00 0.00 39.56 3.58
1849 1922 6.865205 CGCAAAGAGATGAGATACATGACATA 59.135 38.462 0.00 0.00 39.56 2.29
1858 1931 6.381801 TGAGATACATGACATATACAGTGCG 58.618 40.000 0.00 0.00 0.00 5.34
1866 1939 2.422479 ACATATACAGTGCGTCACGACT 59.578 45.455 0.00 0.00 39.64 4.18
1867 1940 2.819422 TATACAGTGCGTCACGACTC 57.181 50.000 0.00 0.00 39.64 3.36
1868 1941 0.179197 ATACAGTGCGTCACGACTCG 60.179 55.000 0.00 0.00 39.64 4.18
1869 1942 2.178892 TACAGTGCGTCACGACTCGG 62.179 60.000 0.00 0.00 39.64 4.63
1887 1960 2.586792 GACTCGGGCAGCCAGAAT 59.413 61.111 15.79 5.31 0.00 2.40
1918 1994 2.034221 GCCGCAAACTCCCTCCTT 59.966 61.111 0.00 0.00 0.00 3.36
1933 2009 2.756283 CTTCTCTCCCTCCGCCGT 60.756 66.667 0.00 0.00 0.00 5.68
1987 2064 0.541764 GGGGATCTCCTCTCTCGCAT 60.542 60.000 3.62 0.00 32.35 4.73
1999 2076 2.043752 TCGCATGTCTCCGGGGTA 60.044 61.111 0.00 0.00 0.00 3.69
2002 2079 1.760875 GCATGTCTCCGGGGTAGGA 60.761 63.158 0.00 0.00 38.80 2.94
2027 2104 2.906897 CAAGGCTTGTGGTGGCGT 60.907 61.111 19.07 0.00 35.01 5.68
2051 2128 2.690099 GATCTGAGATCTGCGGCGCA 62.690 60.000 34.06 34.06 36.92 6.09
2219 2302 2.184322 GCCTTCAGATCGGCGACA 59.816 61.111 13.76 0.00 36.45 4.35
2271 2354 1.307097 GCACCTCCAATCAGATCTGC 58.693 55.000 18.36 0.00 0.00 4.26
2273 2356 2.562635 CACCTCCAATCAGATCTGCTG 58.437 52.381 18.36 16.08 46.31 4.41
2308 2391 0.321653 GCGGTGGTGGTCATCTCTTT 60.322 55.000 0.00 0.00 0.00 2.52
2326 2409 3.680786 CGTCAGAGGTGGTCGGCA 61.681 66.667 0.00 0.00 0.00 5.69
2340 2423 2.439156 GGCATGAGGCTGGGTGTC 60.439 66.667 0.00 0.00 44.01 3.67
2365 2448 1.409064 TCTCGAGATCCGTCATTTGGG 59.591 52.381 12.08 0.00 39.75 4.12
2366 2449 0.464036 TCGAGATCCGTCATTTGGGG 59.536 55.000 3.97 0.00 39.75 4.96
2367 2450 0.464036 CGAGATCCGTCATTTGGGGA 59.536 55.000 0.00 0.00 0.00 4.81
2368 2451 1.134521 CGAGATCCGTCATTTGGGGAA 60.135 52.381 0.00 0.00 32.71 3.97
2369 2452 2.565841 GAGATCCGTCATTTGGGGAAG 58.434 52.381 0.00 0.00 32.71 3.46
2370 2453 2.170607 GAGATCCGTCATTTGGGGAAGA 59.829 50.000 0.00 0.00 32.71 2.87
2371 2454 2.092914 AGATCCGTCATTTGGGGAAGAC 60.093 50.000 0.00 0.00 32.71 3.01
2373 2456 3.226884 CGTCATTTGGGGAAGACGT 57.773 52.632 0.00 0.00 46.17 4.34
2374 2457 2.373540 CGTCATTTGGGGAAGACGTA 57.626 50.000 0.00 0.00 46.17 3.57
2375 2458 2.268298 CGTCATTTGGGGAAGACGTAG 58.732 52.381 0.00 0.00 46.17 3.51
2389 2472 2.955607 ACGTAGTTGCCGCTAAAAAC 57.044 45.000 0.00 0.00 37.78 2.43
2390 2473 1.532437 ACGTAGTTGCCGCTAAAAACC 59.468 47.619 0.00 0.00 37.78 3.27
2391 2474 1.462869 CGTAGTTGCCGCTAAAAACCG 60.463 52.381 0.00 0.00 0.00 4.44
2392 2475 1.799994 GTAGTTGCCGCTAAAAACCGA 59.200 47.619 0.00 0.00 0.00 4.69
2393 2476 0.872388 AGTTGCCGCTAAAAACCGAG 59.128 50.000 0.00 0.00 0.00 4.63
2394 2477 0.728129 GTTGCCGCTAAAAACCGAGC 60.728 55.000 0.00 0.00 35.24 5.03
2395 2478 1.858372 TTGCCGCTAAAAACCGAGCC 61.858 55.000 0.00 0.00 35.13 4.70
2396 2479 2.782615 CCGCTAAAAACCGAGCCG 59.217 61.111 0.00 0.00 35.13 5.52
2397 2480 1.738830 CCGCTAAAAACCGAGCCGA 60.739 57.895 0.00 0.00 35.13 5.54
2398 2481 1.418755 CGCTAAAAACCGAGCCGAC 59.581 57.895 0.00 0.00 35.13 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.789012 AACGCACCATCAAAATCAATCT 57.211 36.364 0.00 0.00 0.00 2.40
1 2 5.051508 GCATAACGCACCATCAAAATCAATC 60.052 40.000 0.00 0.00 41.79 2.67
2 3 4.805192 GCATAACGCACCATCAAAATCAAT 59.195 37.500 0.00 0.00 41.79 2.57
3 4 4.172505 GCATAACGCACCATCAAAATCAA 58.827 39.130 0.00 0.00 41.79 2.57
4 5 3.428725 GGCATAACGCACCATCAAAATCA 60.429 43.478 0.00 0.00 45.17 2.57
5 6 3.115554 GGCATAACGCACCATCAAAATC 58.884 45.455 0.00 0.00 45.17 2.17
6 7 2.495270 TGGCATAACGCACCATCAAAAT 59.505 40.909 0.00 0.00 45.17 1.82
7 8 1.889170 TGGCATAACGCACCATCAAAA 59.111 42.857 0.00 0.00 45.17 2.44
8 9 1.472082 CTGGCATAACGCACCATCAAA 59.528 47.619 0.00 0.00 45.17 2.69
9 10 1.093972 CTGGCATAACGCACCATCAA 58.906 50.000 0.00 0.00 45.17 2.57
10 11 0.747644 CCTGGCATAACGCACCATCA 60.748 55.000 0.00 0.00 45.17 3.07
11 12 0.748005 ACCTGGCATAACGCACCATC 60.748 55.000 0.00 0.00 45.17 3.51
12 13 0.748005 GACCTGGCATAACGCACCAT 60.748 55.000 0.00 0.00 45.17 3.55
13 14 1.376683 GACCTGGCATAACGCACCA 60.377 57.895 0.00 0.00 45.17 4.17
14 15 2.112815 GGACCTGGCATAACGCACC 61.113 63.158 0.00 0.00 45.17 5.01
15 16 2.461110 CGGACCTGGCATAACGCAC 61.461 63.158 0.00 0.00 45.17 5.34
16 17 1.966901 ATCGGACCTGGCATAACGCA 61.967 55.000 0.00 0.00 45.17 5.24
17 18 0.032952 TATCGGACCTGGCATAACGC 59.967 55.000 0.00 0.00 41.28 4.84
18 19 2.029380 TCATATCGGACCTGGCATAACG 60.029 50.000 0.00 0.00 0.00 3.18
19 20 3.678056 TCATATCGGACCTGGCATAAC 57.322 47.619 0.00 0.00 0.00 1.89
20 21 3.055167 CCATCATATCGGACCTGGCATAA 60.055 47.826 0.00 0.00 0.00 1.90
21 22 2.501316 CCATCATATCGGACCTGGCATA 59.499 50.000 0.00 0.00 0.00 3.14
22 23 1.280133 CCATCATATCGGACCTGGCAT 59.720 52.381 0.00 0.00 0.00 4.40
23 24 0.686789 CCATCATATCGGACCTGGCA 59.313 55.000 0.00 0.00 0.00 4.92
24 25 0.036010 CCCATCATATCGGACCTGGC 60.036 60.000 0.00 0.00 0.00 4.85
25 26 1.002430 CACCCATCATATCGGACCTGG 59.998 57.143 0.00 0.00 0.00 4.45
26 27 1.609061 GCACCCATCATATCGGACCTG 60.609 57.143 0.00 0.00 0.00 4.00
27 28 0.687354 GCACCCATCATATCGGACCT 59.313 55.000 0.00 0.00 0.00 3.85
28 29 0.670546 CGCACCCATCATATCGGACC 60.671 60.000 0.00 0.00 0.00 4.46
29 30 0.033504 ACGCACCCATCATATCGGAC 59.966 55.000 0.00 0.00 0.00 4.79
30 31 0.756294 AACGCACCCATCATATCGGA 59.244 50.000 0.00 0.00 0.00 4.55
31 32 1.148310 GAACGCACCCATCATATCGG 58.852 55.000 0.00 0.00 0.00 4.18
32 33 1.148310 GGAACGCACCCATCATATCG 58.852 55.000 0.00 0.00 0.00 2.92
33 34 2.146342 CTGGAACGCACCCATCATATC 58.854 52.381 0.00 0.00 32.49 1.63
34 35 1.815408 GCTGGAACGCACCCATCATAT 60.815 52.381 0.00 0.00 32.49 1.78
35 36 0.463654 GCTGGAACGCACCCATCATA 60.464 55.000 0.00 0.00 32.49 2.15
36 37 1.750399 GCTGGAACGCACCCATCAT 60.750 57.895 0.00 0.00 32.49 2.45
37 38 2.359850 GCTGGAACGCACCCATCA 60.360 61.111 0.00 0.00 32.49 3.07
38 39 3.499737 CGCTGGAACGCACCCATC 61.500 66.667 0.00 0.00 32.49 3.51
39 40 4.329545 ACGCTGGAACGCACCCAT 62.330 61.111 0.00 0.00 36.19 4.00
42 43 3.712881 GACACGCTGGAACGCACC 61.713 66.667 0.00 0.00 36.19 5.01
43 44 3.712881 GGACACGCTGGAACGCAC 61.713 66.667 0.00 0.00 36.19 5.34
55 56 2.363975 TATGTGGAGGCCCGGACAC 61.364 63.158 0.73 4.29 34.29 3.67
56 57 2.039787 TATGTGGAGGCCCGGACA 59.960 61.111 0.73 0.00 34.29 4.02
57 58 2.504519 GTATGTGGAGGCCCGGAC 59.495 66.667 0.73 0.00 34.29 4.79
58 59 3.151710 CGTATGTGGAGGCCCGGA 61.152 66.667 0.73 0.00 34.29 5.14
59 60 4.235762 CCGTATGTGGAGGCCCGG 62.236 72.222 0.00 0.00 34.29 5.73
60 61 3.151710 TCCGTATGTGGAGGCCCG 61.152 66.667 0.00 0.00 33.05 6.13
61 62 2.504519 GTCCGTATGTGGAGGCCC 59.495 66.667 0.00 0.00 39.14 5.80
62 63 2.504519 GGTCCGTATGTGGAGGCC 59.495 66.667 0.00 0.00 39.14 5.19
63 64 2.311688 CTGGGTCCGTATGTGGAGGC 62.312 65.000 0.00 0.00 39.14 4.70
64 65 0.686441 TCTGGGTCCGTATGTGGAGG 60.686 60.000 0.00 0.00 39.14 4.30
65 66 1.414158 ATCTGGGTCCGTATGTGGAG 58.586 55.000 0.00 0.00 39.14 3.86
66 67 2.759839 TATCTGGGTCCGTATGTGGA 57.240 50.000 0.00 0.00 35.04 4.02
67 68 2.028112 CCATATCTGGGTCCGTATGTGG 60.028 54.545 0.00 3.90 39.04 4.17
68 69 3.319137 CCATATCTGGGTCCGTATGTG 57.681 52.381 0.00 0.00 39.04 3.21
99 100 4.309050 CCCCCTCCCCGCCAAAAA 62.309 66.667 0.00 0.00 0.00 1.94
121 122 0.608640 CCCTATACATCCGGCTGTCC 59.391 60.000 15.44 0.00 0.00 4.02
122 123 0.037232 GCCCTATACATCCGGCTGTC 60.037 60.000 15.44 0.00 38.41 3.51
123 124 1.481056 GGCCCTATACATCCGGCTGT 61.481 60.000 16.30 16.30 41.35 4.40
124 125 1.296715 GGCCCTATACATCCGGCTG 59.703 63.158 3.14 3.14 41.35 4.85
125 126 2.283529 CGGCCCTATACATCCGGCT 61.284 63.158 0.00 0.00 41.35 5.52
126 127 2.264794 CGGCCCTATACATCCGGC 59.735 66.667 0.00 0.00 40.85 6.13
128 129 0.395312 AAACCGGCCCTATACATCCG 59.605 55.000 0.00 0.00 41.41 4.18
129 130 3.775261 TTAAACCGGCCCTATACATCC 57.225 47.619 0.00 0.00 0.00 3.51
130 131 4.964593 TCTTTAAACCGGCCCTATACATC 58.035 43.478 0.00 0.00 0.00 3.06
131 132 4.202430 CCTCTTTAAACCGGCCCTATACAT 60.202 45.833 0.00 0.00 0.00 2.29
132 133 3.135167 CCTCTTTAAACCGGCCCTATACA 59.865 47.826 0.00 0.00 0.00 2.29
133 134 3.736720 CCTCTTTAAACCGGCCCTATAC 58.263 50.000 0.00 0.00 0.00 1.47
134 135 2.105306 GCCTCTTTAAACCGGCCCTATA 59.895 50.000 0.00 0.00 36.56 1.31
135 136 1.133884 GCCTCTTTAAACCGGCCCTAT 60.134 52.381 0.00 0.00 36.56 2.57
136 137 0.253894 GCCTCTTTAAACCGGCCCTA 59.746 55.000 0.00 0.00 36.56 3.53
137 138 1.001269 GCCTCTTTAAACCGGCCCT 60.001 57.895 0.00 0.00 36.56 5.19
138 139 3.599584 GCCTCTTTAAACCGGCCC 58.400 61.111 0.00 0.00 36.56 5.80
140 141 0.608308 ACTGGCCTCTTTAAACCGGC 60.608 55.000 3.32 12.49 41.75 6.13
141 142 1.539827 CAACTGGCCTCTTTAAACCGG 59.460 52.381 3.32 0.00 34.56 5.28
142 143 1.539827 CCAACTGGCCTCTTTAAACCG 59.460 52.381 3.32 0.00 0.00 4.44
143 144 2.871453 TCCAACTGGCCTCTTTAAACC 58.129 47.619 3.32 0.00 34.44 3.27
144 145 4.079253 TCATCCAACTGGCCTCTTTAAAC 58.921 43.478 3.32 0.00 34.44 2.01
145 146 4.079253 GTCATCCAACTGGCCTCTTTAAA 58.921 43.478 3.32 0.00 34.44 1.52
146 147 3.686016 GTCATCCAACTGGCCTCTTTAA 58.314 45.455 3.32 0.00 34.44 1.52
147 148 2.354704 CGTCATCCAACTGGCCTCTTTA 60.355 50.000 3.32 0.00 34.44 1.85
148 149 1.611673 CGTCATCCAACTGGCCTCTTT 60.612 52.381 3.32 0.00 34.44 2.52
149 150 0.036010 CGTCATCCAACTGGCCTCTT 60.036 55.000 3.32 0.00 34.44 2.85
150 151 0.904865 TCGTCATCCAACTGGCCTCT 60.905 55.000 3.32 0.00 34.44 3.69
151 152 0.179000 ATCGTCATCCAACTGGCCTC 59.821 55.000 3.32 0.00 34.44 4.70
152 153 0.620556 AATCGTCATCCAACTGGCCT 59.379 50.000 3.32 0.00 34.44 5.19
153 154 1.401905 GAAATCGTCATCCAACTGGCC 59.598 52.381 0.00 0.00 34.44 5.36
154 155 2.083774 TGAAATCGTCATCCAACTGGC 58.916 47.619 0.00 0.00 34.44 4.85
155 156 3.065786 CCATGAAATCGTCATCCAACTGG 59.934 47.826 0.00 0.00 44.01 4.00
156 157 3.488047 GCCATGAAATCGTCATCCAACTG 60.488 47.826 0.00 0.00 44.01 3.16
157 158 2.684881 GCCATGAAATCGTCATCCAACT 59.315 45.455 0.00 0.00 44.01 3.16
158 159 2.223572 GGCCATGAAATCGTCATCCAAC 60.224 50.000 0.00 0.00 44.01 3.77
159 160 2.023673 GGCCATGAAATCGTCATCCAA 58.976 47.619 0.00 0.00 44.01 3.53
160 161 1.679139 GGCCATGAAATCGTCATCCA 58.321 50.000 0.00 0.00 44.01 3.41
161 162 0.588252 CGGCCATGAAATCGTCATCC 59.412 55.000 2.24 0.00 44.01 3.51
162 163 0.588252 CCGGCCATGAAATCGTCATC 59.412 55.000 2.24 0.00 44.01 2.92
164 165 0.742990 GACCGGCCATGAAATCGTCA 60.743 55.000 0.00 0.00 41.67 4.35
165 166 0.742990 TGACCGGCCATGAAATCGTC 60.743 55.000 0.00 0.00 0.00 4.20
166 167 0.107214 ATGACCGGCCATGAAATCGT 60.107 50.000 0.96 0.00 0.00 3.73
167 168 1.024271 AATGACCGGCCATGAAATCG 58.976 50.000 3.17 0.00 0.00 3.34
168 169 2.023673 TCAATGACCGGCCATGAAATC 58.976 47.619 3.17 0.00 0.00 2.17
169 170 1.750778 GTCAATGACCGGCCATGAAAT 59.249 47.619 3.17 0.00 0.00 2.17
170 171 1.173043 GTCAATGACCGGCCATGAAA 58.827 50.000 3.17 0.00 0.00 2.69
171 172 0.679640 GGTCAATGACCGGCCATGAA 60.680 55.000 17.46 0.00 43.14 2.57
172 173 1.077787 GGTCAATGACCGGCCATGA 60.078 57.895 17.46 1.30 43.14 3.07
173 174 3.513225 GGTCAATGACCGGCCATG 58.487 61.111 17.46 0.00 43.14 3.66
182 183 1.003839 GTGGCGGTCAGGTCAATGA 60.004 57.895 0.00 0.00 0.00 2.57
183 184 2.390599 CGTGGCGGTCAGGTCAATG 61.391 63.158 0.00 0.00 0.00 2.82
184 185 1.537814 TACGTGGCGGTCAGGTCAAT 61.538 55.000 11.58 0.00 42.68 2.57
185 186 1.537814 ATACGTGGCGGTCAGGTCAA 61.538 55.000 11.58 0.00 42.68 3.18
186 187 0.680601 TATACGTGGCGGTCAGGTCA 60.681 55.000 11.58 0.00 42.68 4.02
187 188 0.672342 ATATACGTGGCGGTCAGGTC 59.328 55.000 11.58 0.00 42.68 3.85
188 189 1.884579 CTATATACGTGGCGGTCAGGT 59.115 52.381 12.85 12.85 45.24 4.00
189 190 2.156917 TCTATATACGTGGCGGTCAGG 58.843 52.381 0.00 0.02 37.29 3.86
190 191 3.072211 TCTCTATATACGTGGCGGTCAG 58.928 50.000 0.00 0.00 0.00 3.51
191 192 3.130280 TCTCTATATACGTGGCGGTCA 57.870 47.619 0.00 0.00 0.00 4.02
192 193 3.688185 TCATCTCTATATACGTGGCGGTC 59.312 47.826 0.00 0.00 0.00 4.79
193 194 3.682696 TCATCTCTATATACGTGGCGGT 58.317 45.455 0.00 0.00 0.00 5.68
194 195 4.902443 ATCATCTCTATATACGTGGCGG 57.098 45.455 0.00 0.00 0.00 6.13
195 196 6.359480 TGTATCATCTCTATATACGTGGCG 57.641 41.667 0.00 0.00 0.00 5.69
196 197 7.649705 CCATTGTATCATCTCTATATACGTGGC 59.350 40.741 0.00 0.00 32.55 5.01
197 198 8.138074 CCCATTGTATCATCTCTATATACGTGG 58.862 40.741 0.00 0.00 35.91 4.94
198 199 8.687242 ACCCATTGTATCATCTCTATATACGTG 58.313 37.037 0.00 0.00 0.00 4.49
199 200 8.824756 ACCCATTGTATCATCTCTATATACGT 57.175 34.615 0.00 0.00 0.00 3.57
200 201 8.353684 GGACCCATTGTATCATCTCTATATACG 58.646 40.741 0.00 0.00 0.00 3.06
201 202 8.353684 CGGACCCATTGTATCATCTCTATATAC 58.646 40.741 0.00 0.00 0.00 1.47
202 203 8.279361 TCGGACCCATTGTATCATCTCTATATA 58.721 37.037 0.00 0.00 0.00 0.86
203 204 7.126061 TCGGACCCATTGTATCATCTCTATAT 58.874 38.462 0.00 0.00 0.00 0.86
204 205 6.490492 TCGGACCCATTGTATCATCTCTATA 58.510 40.000 0.00 0.00 0.00 1.31
205 206 5.333581 TCGGACCCATTGTATCATCTCTAT 58.666 41.667 0.00 0.00 0.00 1.98
206 207 4.736473 TCGGACCCATTGTATCATCTCTA 58.264 43.478 0.00 0.00 0.00 2.43
207 208 3.576861 TCGGACCCATTGTATCATCTCT 58.423 45.455 0.00 0.00 0.00 3.10
208 209 4.499183 GATCGGACCCATTGTATCATCTC 58.501 47.826 0.00 0.00 0.00 2.75
209 210 3.056536 CGATCGGACCCATTGTATCATCT 60.057 47.826 7.38 0.00 0.00 2.90
210 211 3.254060 CGATCGGACCCATTGTATCATC 58.746 50.000 7.38 0.00 0.00 2.92
211 212 2.632996 ACGATCGGACCCATTGTATCAT 59.367 45.455 20.98 0.00 0.00 2.45
212 213 2.036387 ACGATCGGACCCATTGTATCA 58.964 47.619 20.98 0.00 0.00 2.15
213 214 2.814280 ACGATCGGACCCATTGTATC 57.186 50.000 20.98 0.00 0.00 2.24
214 215 3.493334 TCTACGATCGGACCCATTGTAT 58.507 45.455 20.98 0.00 0.00 2.29
215 216 2.934887 TCTACGATCGGACCCATTGTA 58.065 47.619 20.98 0.00 0.00 2.41
216 217 1.771565 TCTACGATCGGACCCATTGT 58.228 50.000 20.98 0.00 0.00 2.71
217 218 2.677199 CATCTACGATCGGACCCATTG 58.323 52.381 20.98 0.00 0.00 2.82
218 219 1.000955 GCATCTACGATCGGACCCATT 59.999 52.381 20.98 0.00 0.00 3.16
219 220 0.603569 GCATCTACGATCGGACCCAT 59.396 55.000 20.98 0.00 0.00 4.00
220 221 0.467474 AGCATCTACGATCGGACCCA 60.467 55.000 20.98 0.00 0.00 4.51
221 222 0.241481 GAGCATCTACGATCGGACCC 59.759 60.000 20.98 2.48 0.00 4.46
222 223 3.777016 GAGCATCTACGATCGGACC 57.223 57.895 20.98 3.28 0.00 4.46
234 235 3.521947 ACGGTACCAAGTTAGAGCATC 57.478 47.619 13.54 0.00 0.00 3.91
235 236 3.765511 TGTACGGTACCAAGTTAGAGCAT 59.234 43.478 13.54 0.00 0.00 3.79
236 237 3.156293 TGTACGGTACCAAGTTAGAGCA 58.844 45.455 13.54 0.00 0.00 4.26
237 238 3.855689 TGTACGGTACCAAGTTAGAGC 57.144 47.619 13.54 0.00 0.00 4.09
238 239 6.690194 AGTATGTACGGTACCAAGTTAGAG 57.310 41.667 13.54 0.00 0.00 2.43
239 240 8.752005 ATAAGTATGTACGGTACCAAGTTAGA 57.248 34.615 13.54 0.00 0.00 2.10
240 241 9.807649 AAATAAGTATGTACGGTACCAAGTTAG 57.192 33.333 13.54 0.00 0.00 2.34
242 243 9.506018 AAAAATAAGTATGTACGGTACCAAGTT 57.494 29.630 13.54 13.37 0.00 2.66
265 266 9.612066 ATGGCTTTCACAAAAGAGAAATAAAAA 57.388 25.926 2.21 0.00 43.90 1.94
267 268 9.691362 GTATGGCTTTCACAAAAGAGAAATAAA 57.309 29.630 2.21 0.00 43.90 1.40
268 269 8.855110 TGTATGGCTTTCACAAAAGAGAAATAA 58.145 29.630 2.21 0.00 43.90 1.40
269 270 8.402798 TGTATGGCTTTCACAAAAGAGAAATA 57.597 30.769 2.21 0.00 43.90 1.40
270 271 7.288810 TGTATGGCTTTCACAAAAGAGAAAT 57.711 32.000 2.21 0.00 43.90 2.17
271 272 6.707440 TGTATGGCTTTCACAAAAGAGAAA 57.293 33.333 2.21 0.00 43.90 2.52
272 273 6.899393 ATGTATGGCTTTCACAAAAGAGAA 57.101 33.333 2.21 0.00 43.90 2.87
273 274 7.168219 AGTATGTATGGCTTTCACAAAAGAGA 58.832 34.615 2.21 0.00 43.90 3.10
274 275 7.383102 AGTATGTATGGCTTTCACAAAAGAG 57.617 36.000 2.21 0.00 43.90 2.85
275 276 7.759489 AAGTATGTATGGCTTTCACAAAAGA 57.241 32.000 2.21 0.00 43.90 2.52
277 278 9.853555 CAATAAGTATGTATGGCTTTCACAAAA 57.146 29.630 0.00 0.00 0.00 2.44
278 279 9.019656 ACAATAAGTATGTATGGCTTTCACAAA 57.980 29.630 0.00 0.00 0.00 2.83
279 280 8.458052 CACAATAAGTATGTATGGCTTTCACAA 58.542 33.333 0.00 0.00 0.00 3.33
280 281 7.609918 ACACAATAAGTATGTATGGCTTTCACA 59.390 33.333 0.00 0.00 0.00 3.58
281 282 7.985476 ACACAATAAGTATGTATGGCTTTCAC 58.015 34.615 0.00 0.00 0.00 3.18
282 283 9.104965 GTACACAATAAGTATGTATGGCTTTCA 57.895 33.333 0.00 0.00 31.79 2.69
283 284 8.273557 CGTACACAATAAGTATGTATGGCTTTC 58.726 37.037 0.00 0.00 33.86 2.62
284 285 7.767198 ACGTACACAATAAGTATGTATGGCTTT 59.233 33.333 7.53 0.00 39.28 3.51
285 286 7.270047 ACGTACACAATAAGTATGTATGGCTT 58.730 34.615 7.53 0.00 39.28 4.35
286 287 6.812998 ACGTACACAATAAGTATGTATGGCT 58.187 36.000 7.53 0.00 39.28 4.75
287 288 7.342194 CAACGTACACAATAAGTATGTATGGC 58.658 38.462 7.53 0.00 39.94 4.40
288 289 7.493320 ACCAACGTACACAATAAGTATGTATGG 59.507 37.037 16.39 16.39 39.94 2.74
289 290 8.415192 ACCAACGTACACAATAAGTATGTATG 57.585 34.615 0.00 0.00 39.94 2.39
290 291 9.740239 CTACCAACGTACACAATAAGTATGTAT 57.260 33.333 0.00 0.00 39.94 2.29
291 292 8.739039 ACTACCAACGTACACAATAAGTATGTA 58.261 33.333 0.00 0.00 39.94 2.29
292 293 7.605449 ACTACCAACGTACACAATAAGTATGT 58.395 34.615 0.00 0.00 41.96 2.29
293 294 8.470040 AACTACCAACGTACACAATAAGTATG 57.530 34.615 0.00 0.00 35.20 2.39
295 296 9.405587 GTAAACTACCAACGTACACAATAAGTA 57.594 33.333 0.00 0.00 0.00 2.24
296 297 8.143835 AGTAAACTACCAACGTACACAATAAGT 58.856 33.333 0.00 0.00 0.00 2.24
297 298 8.430063 CAGTAAACTACCAACGTACACAATAAG 58.570 37.037 0.00 0.00 0.00 1.73
298 299 7.925483 ACAGTAAACTACCAACGTACACAATAA 59.075 33.333 0.00 0.00 0.00 1.40
299 300 7.432869 ACAGTAAACTACCAACGTACACAATA 58.567 34.615 0.00 0.00 0.00 1.90
300 301 6.282930 ACAGTAAACTACCAACGTACACAAT 58.717 36.000 0.00 0.00 0.00 2.71
301 302 5.659463 ACAGTAAACTACCAACGTACACAA 58.341 37.500 0.00 0.00 0.00 3.33
302 303 5.261209 ACAGTAAACTACCAACGTACACA 57.739 39.130 0.00 0.00 0.00 3.72
303 304 4.681483 GGACAGTAAACTACCAACGTACAC 59.319 45.833 0.00 0.00 0.00 2.90
304 305 4.261994 GGGACAGTAAACTACCAACGTACA 60.262 45.833 0.00 0.00 0.00 2.90
305 306 4.237724 GGGACAGTAAACTACCAACGTAC 58.762 47.826 0.00 0.00 0.00 3.67
306 307 3.894427 TGGGACAGTAAACTACCAACGTA 59.106 43.478 0.00 0.00 0.00 3.57
307 308 2.699846 TGGGACAGTAAACTACCAACGT 59.300 45.455 7.49 0.00 0.00 3.99
308 309 3.389925 TGGGACAGTAAACTACCAACG 57.610 47.619 7.49 0.00 0.00 4.10
323 324 0.175073 AGAACCGCTACGAATGGGAC 59.825 55.000 0.00 0.00 0.00 4.46
324 325 0.458669 GAGAACCGCTACGAATGGGA 59.541 55.000 0.00 0.00 0.00 4.37
325 326 0.870307 CGAGAACCGCTACGAATGGG 60.870 60.000 0.00 0.00 0.00 4.00
326 327 0.179145 ACGAGAACCGCTACGAATGG 60.179 55.000 0.00 0.00 43.32 3.16
327 328 1.320555 CAACGAGAACCGCTACGAATG 59.679 52.381 0.00 0.00 43.32 2.67
328 329 1.625616 CAACGAGAACCGCTACGAAT 58.374 50.000 0.00 0.00 43.32 3.34
329 330 1.005294 GCAACGAGAACCGCTACGAA 61.005 55.000 0.00 0.00 43.32 3.85
330 331 1.443194 GCAACGAGAACCGCTACGA 60.443 57.895 0.00 0.00 43.32 3.43
331 332 2.774951 CGCAACGAGAACCGCTACG 61.775 63.158 0.00 0.00 43.32 3.51
332 333 2.442188 CCGCAACGAGAACCGCTAC 61.442 63.158 0.00 0.00 43.32 3.58
333 334 1.940883 ATCCGCAACGAGAACCGCTA 61.941 55.000 0.00 0.00 43.32 4.26
334 335 1.940883 TATCCGCAACGAGAACCGCT 61.941 55.000 0.00 0.00 43.32 5.52
335 336 1.480219 CTATCCGCAACGAGAACCGC 61.480 60.000 0.00 0.00 43.32 5.68
336 337 1.480219 GCTATCCGCAACGAGAACCG 61.480 60.000 0.00 0.00 40.74 4.44
337 338 0.179108 AGCTATCCGCAACGAGAACC 60.179 55.000 0.00 0.00 42.61 3.62
338 339 2.386249 CTAGCTATCCGCAACGAGAAC 58.614 52.381 0.00 0.00 42.61 3.01
339 340 1.337071 CCTAGCTATCCGCAACGAGAA 59.663 52.381 0.00 0.00 42.61 2.87
340 341 0.952280 CCTAGCTATCCGCAACGAGA 59.048 55.000 0.00 0.00 42.61 4.04
341 342 0.669077 ACCTAGCTATCCGCAACGAG 59.331 55.000 0.00 0.00 42.61 4.18
342 343 1.878088 CTACCTAGCTATCCGCAACGA 59.122 52.381 0.00 0.00 42.61 3.85
343 344 1.878088 TCTACCTAGCTATCCGCAACG 59.122 52.381 0.00 0.00 42.61 4.10
344 345 3.067742 TGTTCTACCTAGCTATCCGCAAC 59.932 47.826 0.00 0.00 42.61 4.17
345 346 3.293337 TGTTCTACCTAGCTATCCGCAA 58.707 45.455 0.00 0.00 42.61 4.85
346 347 2.940158 TGTTCTACCTAGCTATCCGCA 58.060 47.619 0.00 0.00 42.61 5.69
347 348 4.317671 TTTGTTCTACCTAGCTATCCGC 57.682 45.455 0.00 0.00 39.57 5.54
348 349 7.039923 TCCTATTTTGTTCTACCTAGCTATCCG 60.040 40.741 0.00 0.00 0.00 4.18
349 350 8.191534 TCCTATTTTGTTCTACCTAGCTATCC 57.808 38.462 0.00 0.00 0.00 2.59
350 351 9.478768 GTTCCTATTTTGTTCTACCTAGCTATC 57.521 37.037 0.00 0.00 0.00 2.08
351 352 8.989131 TGTTCCTATTTTGTTCTACCTAGCTAT 58.011 33.333 0.00 0.00 0.00 2.97
352 353 8.370266 TGTTCCTATTTTGTTCTACCTAGCTA 57.630 34.615 0.00 0.00 0.00 3.32
353 354 7.253905 TGTTCCTATTTTGTTCTACCTAGCT 57.746 36.000 0.00 0.00 0.00 3.32
354 355 7.822822 TCTTGTTCCTATTTTGTTCTACCTAGC 59.177 37.037 0.00 0.00 0.00 3.42
355 356 9.720769 TTCTTGTTCCTATTTTGTTCTACCTAG 57.279 33.333 0.00 0.00 0.00 3.02
356 357 9.720769 CTTCTTGTTCCTATTTTGTTCTACCTA 57.279 33.333 0.00 0.00 0.00 3.08
357 358 7.665974 CCTTCTTGTTCCTATTTTGTTCTACCT 59.334 37.037 0.00 0.00 0.00 3.08
358 359 7.447545 ACCTTCTTGTTCCTATTTTGTTCTACC 59.552 37.037 0.00 0.00 0.00 3.18
359 360 8.392372 ACCTTCTTGTTCCTATTTTGTTCTAC 57.608 34.615 0.00 0.00 0.00 2.59
360 361 8.990163 AACCTTCTTGTTCCTATTTTGTTCTA 57.010 30.769 0.00 0.00 0.00 2.10
361 362 7.898014 AACCTTCTTGTTCCTATTTTGTTCT 57.102 32.000 0.00 0.00 0.00 3.01
362 363 9.678941 CTTAACCTTCTTGTTCCTATTTTGTTC 57.321 33.333 0.00 0.00 0.00 3.18
363 364 9.416284 TCTTAACCTTCTTGTTCCTATTTTGTT 57.584 29.630 0.00 0.00 0.00 2.83
364 365 8.990163 TCTTAACCTTCTTGTTCCTATTTTGT 57.010 30.769 0.00 0.00 0.00 2.83
368 369 9.025041 CCATTTCTTAACCTTCTTGTTCCTATT 57.975 33.333 0.00 0.00 0.00 1.73
383 384 7.324135 GTCGTCTAGATCGATCCATTTCTTAAC 59.676 40.741 21.66 6.25 39.45 2.01
385 386 6.347483 CGTCGTCTAGATCGATCCATTTCTTA 60.347 42.308 21.66 5.07 39.45 2.10
390 391 3.400255 TCGTCGTCTAGATCGATCCATT 58.600 45.455 21.66 6.34 39.45 3.16
406 407 1.933041 CCTACGTGCGTCATCGTCG 60.933 63.158 0.00 0.00 40.70 5.12
409 410 1.933041 CGTCCTACGTGCGTCATCG 60.933 63.158 0.00 0.00 36.74 3.84
418 419 2.909457 TTATCCGGCCCGTCCTACGT 62.909 60.000 0.85 0.00 40.58 3.57
419 420 2.138656 CTTATCCGGCCCGTCCTACG 62.139 65.000 0.85 0.00 42.11 3.51
420 421 1.664306 CTTATCCGGCCCGTCCTAC 59.336 63.158 0.85 0.00 0.00 3.18
421 422 2.205152 GCTTATCCGGCCCGTCCTA 61.205 63.158 0.85 0.00 0.00 2.94
422 423 3.547513 GCTTATCCGGCCCGTCCT 61.548 66.667 0.85 0.00 0.00 3.85
473 474 0.179081 GACCTACGATCCAGGGTTGC 60.179 60.000 11.69 0.00 37.51 4.17
479 480 2.184830 TCGCCGACCTACGATCCAG 61.185 63.158 0.00 0.00 45.77 3.86
480 481 2.124612 TCGCCGACCTACGATCCA 60.125 61.111 0.00 0.00 45.77 3.41
495 497 0.317103 CCTAGCTTGGATCGACGTCG 60.317 60.000 31.30 31.30 41.45 5.12
496 498 1.022735 TCCTAGCTTGGATCGACGTC 58.977 55.000 13.28 5.18 0.00 4.34
497 499 1.405821 CTTCCTAGCTTGGATCGACGT 59.594 52.381 17.91 0.00 35.83 4.34
503 505 1.211457 CTGCACCTTCCTAGCTTGGAT 59.789 52.381 17.91 0.00 35.83 3.41
509 511 0.036875 AACACCTGCACCTTCCTAGC 59.963 55.000 0.00 0.00 0.00 3.42
545 547 1.580845 GCGTCAGCTGCTTGTTGGAT 61.581 55.000 9.47 0.00 41.01 3.41
589 594 9.712305 CTATCTATCGGTGGAGTTTATTTGAAT 57.288 33.333 0.00 0.00 0.00 2.57
590 595 8.920174 TCTATCTATCGGTGGAGTTTATTTGAA 58.080 33.333 0.00 0.00 0.00 2.69
591 596 8.473358 TCTATCTATCGGTGGAGTTTATTTGA 57.527 34.615 0.00 0.00 0.00 2.69
604 609 7.105588 TGCAATGCAAATATCTATCTATCGGT 58.894 34.615 5.01 0.00 34.76 4.69
626 631 3.457263 CAGCCAGCCATGCATGCA 61.457 61.111 25.04 25.04 31.48 3.96
642 647 4.393155 ATTCACGAGCAGCGGCCA 62.393 61.111 4.82 0.00 46.49 5.36
649 654 2.747460 GCCTGCCATTCACGAGCA 60.747 61.111 0.00 0.00 34.79 4.26
650 655 3.869272 CGCCTGCCATTCACGAGC 61.869 66.667 0.00 0.00 0.00 5.03
651 656 3.197790 CCGCCTGCCATTCACGAG 61.198 66.667 0.00 0.00 0.00 4.18
652 657 4.776322 CCCGCCTGCCATTCACGA 62.776 66.667 0.00 0.00 0.00 4.35
836 843 3.285484 CGTGGGAGGTATATATAGCGGT 58.715 50.000 14.61 0.00 35.98 5.68
863 870 1.058428 TGGAGCATGGAGATGAGGGG 61.058 60.000 0.00 0.00 0.00 4.79
885 892 2.435059 GAACAGAGCGGGGCAGAC 60.435 66.667 0.00 0.00 0.00 3.51
886 893 2.604686 AGAACAGAGCGGGGCAGA 60.605 61.111 0.00 0.00 0.00 4.26
888 895 3.706373 GGAGAACAGAGCGGGGCA 61.706 66.667 0.00 0.00 0.00 5.36
889 896 3.378399 GAGGAGAACAGAGCGGGGC 62.378 68.421 0.00 0.00 0.00 5.80
890 897 1.671901 GAGAGGAGAACAGAGCGGGG 61.672 65.000 0.00 0.00 0.00 5.73
891 898 1.671901 GGAGAGGAGAACAGAGCGGG 61.672 65.000 0.00 0.00 0.00 6.13
892 899 0.682855 AGGAGAGGAGAACAGAGCGG 60.683 60.000 0.00 0.00 0.00 5.52
893 900 0.738389 GAGGAGAGGAGAACAGAGCG 59.262 60.000 0.00 0.00 0.00 5.03
894 901 1.750778 CAGAGGAGAGGAGAACAGAGC 59.249 57.143 0.00 0.00 0.00 4.09
895 902 1.750778 GCAGAGGAGAGGAGAACAGAG 59.249 57.143 0.00 0.00 0.00 3.35
896 903 1.357420 AGCAGAGGAGAGGAGAACAGA 59.643 52.381 0.00 0.00 0.00 3.41
897 904 1.750778 GAGCAGAGGAGAGGAGAACAG 59.249 57.143 0.00 0.00 0.00 3.16
898 905 1.357420 AGAGCAGAGGAGAGGAGAACA 59.643 52.381 0.00 0.00 0.00 3.18
899 906 1.750778 CAGAGCAGAGGAGAGGAGAAC 59.249 57.143 0.00 0.00 0.00 3.01
900 907 1.959508 GCAGAGCAGAGGAGAGGAGAA 60.960 57.143 0.00 0.00 0.00 2.87
934 953 2.557056 TGAACGATCGGTCAAGTCTCTT 59.443 45.455 32.43 6.68 39.10 2.85
935 954 2.160205 TGAACGATCGGTCAAGTCTCT 58.840 47.619 32.43 0.00 39.10 3.10
936 955 2.631418 TGAACGATCGGTCAAGTCTC 57.369 50.000 32.43 6.07 39.10 3.36
997 1044 0.681887 TGCAGCAGATGGTCCATTGG 60.682 55.000 5.65 2.61 0.00 3.16
1303 1362 2.510906 GTACATCTGCCCGGCCAT 59.489 61.111 7.03 0.00 0.00 4.40
1304 1363 4.155733 CGTACATCTGCCCGGCCA 62.156 66.667 7.03 0.00 0.00 5.36
1429 1491 1.817099 ATACAAGAGCAGCGGCAGC 60.817 57.895 12.44 9.56 44.61 5.25
1430 1492 0.742281 ACATACAAGAGCAGCGGCAG 60.742 55.000 12.44 0.00 44.61 4.85
1511 1581 6.259550 ACACTTAAAGCTAAGGCAAGATTG 57.740 37.500 1.46 0.00 39.16 2.67
1515 1585 6.966021 TGTTTACACTTAAAGCTAAGGCAAG 58.034 36.000 1.46 0.00 39.16 4.01
1536 1606 4.399978 GAGCAACGCGTATTATGTTTGTT 58.600 39.130 14.46 1.43 0.00 2.83
1545 1615 1.024579 CAAGGGGAGCAACGCGTATT 61.025 55.000 14.46 0.00 0.00 1.89
1548 1618 2.386064 TTACAAGGGGAGCAACGCGT 62.386 55.000 5.58 5.58 0.00 6.01
1550 1620 0.605589 AGTTACAAGGGGAGCAACGC 60.606 55.000 0.00 0.00 0.00 4.84
1577 1648 8.490311 TCATCCTTGGTAATTACATCATGTGTA 58.510 33.333 17.16 0.00 42.29 2.90
1605 1676 1.135199 TCATCGCAAACGTACTCTCCC 60.135 52.381 0.00 0.00 41.18 4.30
1608 1679 3.021269 TGTTCATCGCAAACGTACTCT 57.979 42.857 0.00 0.00 41.18 3.24
1613 1684 2.598907 CGAACTTGTTCATCGCAAACGT 60.599 45.455 13.05 0.00 41.18 3.99
1645 1716 8.951969 CGTGAAAAGAAAATGAAAGAAGAGAAG 58.048 33.333 0.00 0.00 0.00 2.85
1648 1719 8.841444 TTCGTGAAAAGAAAATGAAAGAAGAG 57.159 30.769 0.00 0.00 29.44 2.85
1692 1765 9.973661 TGTTTCTCTCCTTTTATGGATGAAATA 57.026 29.630 11.74 8.54 38.90 1.40
1700 1773 6.884280 ACTGTTGTTTCTCTCCTTTTATGG 57.116 37.500 0.00 0.00 0.00 2.74
1721 1794 3.762288 TGCCTTCTCTCGTGTATGTTACT 59.238 43.478 0.00 0.00 0.00 2.24
1732 1805 3.393970 TGCCCCTGCCTTCTCTCG 61.394 66.667 0.00 0.00 36.33 4.04
1754 1827 6.992715 ACTCCTTTATGATCTTTTCATACCGG 59.007 38.462 0.00 0.00 45.02 5.28
1755 1828 7.519008 GCACTCCTTTATGATCTTTTCATACCG 60.519 40.741 0.00 0.00 45.02 4.02
1756 1829 7.283127 TGCACTCCTTTATGATCTTTTCATACC 59.717 37.037 0.00 0.00 45.02 2.73
1757 1830 8.213518 TGCACTCCTTTATGATCTTTTCATAC 57.786 34.615 0.00 0.00 45.02 2.39
1758 1831 8.677300 GTTGCACTCCTTTATGATCTTTTCATA 58.323 33.333 0.00 0.00 43.43 2.15
1759 1832 7.177216 TGTTGCACTCCTTTATGATCTTTTCAT 59.823 33.333 0.00 0.00 46.86 2.57
1760 1833 6.489700 TGTTGCACTCCTTTATGATCTTTTCA 59.510 34.615 0.00 0.00 39.12 2.69
1761 1834 6.803807 GTGTTGCACTCCTTTATGATCTTTTC 59.196 38.462 0.00 0.00 0.00 2.29
1762 1835 6.265196 TGTGTTGCACTCCTTTATGATCTTTT 59.735 34.615 0.00 0.00 35.11 2.27
1763 1836 5.769662 TGTGTTGCACTCCTTTATGATCTTT 59.230 36.000 0.00 0.00 35.11 2.52
1764 1837 5.316167 TGTGTTGCACTCCTTTATGATCTT 58.684 37.500 0.00 0.00 35.11 2.40
1787 1860 2.353208 CGAGCTAGGAGAGTTTTGTGCT 60.353 50.000 0.00 0.00 0.00 4.40
1812 1885 0.748729 TCTTTGCGTTTCCAACCGGT 60.749 50.000 0.00 0.00 0.00 5.28
1817 1890 3.738982 TCTCATCTCTTTGCGTTTCCAA 58.261 40.909 0.00 0.00 0.00 3.53
1818 1891 3.401033 TCTCATCTCTTTGCGTTTCCA 57.599 42.857 0.00 0.00 0.00 3.53
1825 1898 8.774890 ATATGTCATGTATCTCATCTCTTTGC 57.225 34.615 0.00 0.00 34.09 3.68
1830 1903 9.786105 CACTGTATATGTCATGTATCTCATCTC 57.214 37.037 0.00 0.00 34.09 2.75
1843 1916 2.420722 TCGTGACGCACTGTATATGTCA 59.579 45.455 0.00 0.00 37.24 3.58
1844 1917 2.782192 GTCGTGACGCACTGTATATGTC 59.218 50.000 0.00 0.00 31.34 3.06
1847 1920 2.286242 CGAGTCGTGACGCACTGTATAT 60.286 50.000 13.18 0.00 36.20 0.86
1849 1922 0.179197 CGAGTCGTGACGCACTGTAT 60.179 55.000 13.18 0.00 36.20 2.29
1852 1925 2.801162 CCGAGTCGTGACGCACTG 60.801 66.667 12.31 7.17 36.20 3.66
1858 1931 2.479650 CGAGTCCCGAGTCGTGAC 59.520 66.667 18.89 18.89 46.12 3.67
1869 1942 2.932130 GATTCTGGCTGCCCGAGTCC 62.932 65.000 20.10 8.07 0.00 3.85
1879 1952 2.812619 GGCGGCTAGGATTCTGGCT 61.813 63.158 9.51 0.00 45.37 4.75
1987 2064 2.044650 CGTCCTACCCCGGAGACA 60.045 66.667 0.73 0.00 32.70 3.41
2002 2079 1.071471 CACAAGCCTTGAGGTCCGT 59.929 57.895 12.25 0.00 37.57 4.69
2009 2086 2.594303 CGCCACCACAAGCCTTGA 60.594 61.111 12.25 0.00 0.00 3.02
2016 2093 3.171828 ATCGGTCACGCCACCACAA 62.172 57.895 4.36 0.00 40.69 3.33
2027 2104 0.665298 CGCAGATCTCAGATCGGTCA 59.335 55.000 15.30 0.00 0.00 4.02
2132 2209 4.096003 CGAAGGGCCATCCACGGT 62.096 66.667 6.18 0.00 38.24 4.83
2225 2308 3.017581 GACCACCAGGCCCTCCAT 61.018 66.667 0.00 0.00 39.06 3.41
2260 2343 1.134580 CCGGTCACAGCAGATCTGATT 60.135 52.381 27.04 10.54 45.72 2.57
2308 2391 3.371063 GCCGACCACCTCTGACGA 61.371 66.667 0.00 0.00 0.00 4.20
2326 2409 3.402681 CCGGACACCCAGCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
2365 2448 0.171903 TAGCGGCAACTACGTCTTCC 59.828 55.000 1.45 0.00 0.00 3.46
2366 2449 1.986698 TTAGCGGCAACTACGTCTTC 58.013 50.000 1.45 0.00 0.00 2.87
2367 2450 2.443887 TTTAGCGGCAACTACGTCTT 57.556 45.000 1.45 0.00 0.00 3.01
2368 2451 2.443887 TTTTAGCGGCAACTACGTCT 57.556 45.000 1.45 0.00 0.00 4.18
2369 2452 2.411935 GGTTTTTAGCGGCAACTACGTC 60.412 50.000 1.45 0.00 0.00 4.34
2370 2453 1.532437 GGTTTTTAGCGGCAACTACGT 59.468 47.619 1.45 0.00 0.00 3.57
2371 2454 1.462869 CGGTTTTTAGCGGCAACTACG 60.463 52.381 1.45 0.00 0.00 3.51
2372 2455 1.799994 TCGGTTTTTAGCGGCAACTAC 59.200 47.619 1.45 0.00 0.00 2.73
2373 2456 2.070783 CTCGGTTTTTAGCGGCAACTA 58.929 47.619 1.45 0.00 0.00 2.24
2374 2457 0.872388 CTCGGTTTTTAGCGGCAACT 59.128 50.000 1.45 0.00 0.00 3.16
2375 2458 0.728129 GCTCGGTTTTTAGCGGCAAC 60.728 55.000 1.45 0.00 0.00 4.17
2376 2459 1.577421 GCTCGGTTTTTAGCGGCAA 59.423 52.632 1.45 0.00 0.00 4.52
2377 2460 2.329614 GGCTCGGTTTTTAGCGGCA 61.330 57.895 1.45 0.00 39.71 5.69
2378 2461 2.483745 GGCTCGGTTTTTAGCGGC 59.516 61.111 0.00 0.00 39.71 6.53
2379 2462 1.738830 TCGGCTCGGTTTTTAGCGG 60.739 57.895 0.00 0.00 39.71 5.52
2380 2463 1.418755 GTCGGCTCGGTTTTTAGCG 59.581 57.895 0.00 0.00 39.71 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.