Multiple sequence alignment - TraesCS5A01G008600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G008600 | chr5A | 100.000 | 5062 | 0 | 0 | 1 | 5062 | 6252439 | 6257500 | 0.000000e+00 | 9348 |
1 | TraesCS5A01G008600 | chr5A | 83.821 | 513 | 47 | 23 | 2777 | 3271 | 6255709 | 6255215 | 5.970000e-124 | 455 |
2 | TraesCS5A01G008600 | chr5A | 79.377 | 514 | 84 | 20 | 1304 | 1804 | 6609510 | 6610014 | 4.850000e-90 | 342 |
3 | TraesCS5A01G008600 | chr5B | 93.099 | 3420 | 144 | 39 | 787 | 4183 | 37371811 | 37375161 | 0.000000e+00 | 4924 |
4 | TraesCS5A01G008600 | chr5B | 89.977 | 888 | 69 | 8 | 4184 | 5062 | 37376041 | 37376917 | 0.000000e+00 | 1129 |
5 | TraesCS5A01G008600 | chr5B | 85.554 | 893 | 95 | 22 | 814 | 1700 | 32564932 | 32565796 | 0.000000e+00 | 904 |
6 | TraesCS5A01G008600 | chr5B | 88.270 | 682 | 54 | 12 | 4389 | 5061 | 37266126 | 37265462 | 0.000000e+00 | 793 |
7 | TraesCS5A01G008600 | chr5B | 84.748 | 813 | 96 | 12 | 784 | 1595 | 32422987 | 32423772 | 0.000000e+00 | 789 |
8 | TraesCS5A01G008600 | chr5B | 86.477 | 562 | 50 | 19 | 3448 | 4004 | 32646999 | 32647539 | 1.210000e-165 | 593 |
9 | TraesCS5A01G008600 | chr5B | 92.067 | 416 | 20 | 4 | 35 | 450 | 37370947 | 37371349 | 1.580000e-159 | 573 |
10 | TraesCS5A01G008600 | chr5B | 96.382 | 304 | 11 | 0 | 486 | 789 | 37371343 | 37371646 | 7.570000e-138 | 501 |
11 | TraesCS5A01G008600 | chr5B | 75.947 | 1056 | 179 | 39 | 1250 | 2269 | 7862673 | 7861657 | 1.650000e-129 | 473 |
12 | TraesCS5A01G008600 | chr5B | 81.421 | 366 | 52 | 6 | 1917 | 2271 | 7995752 | 7995392 | 8.290000e-73 | 285 |
13 | TraesCS5A01G008600 | chr5B | 92.000 | 200 | 14 | 2 | 4184 | 4382 | 37274028 | 37273830 | 3.860000e-71 | 279 |
14 | TraesCS5A01G008600 | chr5B | 90.099 | 202 | 14 | 2 | 3989 | 4184 | 32648162 | 32648363 | 1.810000e-64 | 257 |
15 | TraesCS5A01G008600 | chr5B | 84.921 | 252 | 34 | 4 | 2777 | 3025 | 120574784 | 120575034 | 8.410000e-63 | 252 |
16 | TraesCS5A01G008600 | chr5D | 75.872 | 1061 | 173 | 41 | 1281 | 2305 | 7493050 | 7494063 | 9.930000e-127 | 464 |
17 | TraesCS5A01G008600 | chr5D | 83.247 | 388 | 49 | 12 | 3044 | 3424 | 556557895 | 556557517 | 4.850000e-90 | 342 |
18 | TraesCS5A01G008600 | chr5D | 85.098 | 255 | 29 | 7 | 2777 | 3024 | 64239919 | 64240171 | 8.410000e-63 | 252 |
19 | TraesCS5A01G008600 | chr7B | 83.548 | 389 | 41 | 14 | 3044 | 3425 | 683436848 | 683437220 | 4.850000e-90 | 342 |
20 | TraesCS5A01G008600 | chr7B | 82.206 | 399 | 42 | 20 | 3036 | 3425 | 327459820 | 327460198 | 2.940000e-82 | 316 |
21 | TraesCS5A01G008600 | chr7B | 81.137 | 387 | 55 | 11 | 3044 | 3425 | 268510003 | 268509630 | 1.380000e-75 | 294 |
22 | TraesCS5A01G008600 | chr7B | 84.959 | 246 | 33 | 4 | 2781 | 3024 | 268509781 | 268510024 | 3.910000e-61 | 246 |
23 | TraesCS5A01G008600 | chr6D | 83.290 | 389 | 48 | 10 | 3044 | 3425 | 461709986 | 461709608 | 4.850000e-90 | 342 |
24 | TraesCS5A01G008600 | chr4B | 82.732 | 388 | 49 | 12 | 3044 | 3425 | 391542851 | 391542476 | 3.780000e-86 | 329 |
25 | TraesCS5A01G008600 | chr1B | 81.795 | 390 | 51 | 13 | 3044 | 3425 | 186803747 | 186803370 | 4.920000e-80 | 309 |
26 | TraesCS5A01G008600 | chr1B | 86.047 | 258 | 29 | 6 | 2774 | 3025 | 565853311 | 565853567 | 2.320000e-68 | 270 |
27 | TraesCS5A01G008600 | chr2D | 80.720 | 389 | 55 | 12 | 3044 | 3424 | 648235945 | 648235569 | 8.290000e-73 | 285 |
28 | TraesCS5A01G008600 | chr2D | 86.957 | 253 | 26 | 5 | 2777 | 3024 | 370332551 | 370332801 | 1.390000e-70 | 278 |
29 | TraesCS5A01G008600 | chr7D | 83.895 | 267 | 31 | 11 | 2763 | 3024 | 164102965 | 164103224 | 1.410000e-60 | 244 |
30 | TraesCS5A01G008600 | chr4A | 83.209 | 268 | 35 | 10 | 2763 | 3024 | 444087222 | 444086959 | 2.360000e-58 | 237 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G008600 | chr5A | 6252439 | 6257500 | 5061 | False | 9348.00 | 9348 | 100.00000 | 1 | 5062 | 1 | chr5A.!!$F1 | 5061 |
1 | TraesCS5A01G008600 | chr5A | 6609510 | 6610014 | 504 | False | 342.00 | 342 | 79.37700 | 1304 | 1804 | 1 | chr5A.!!$F2 | 500 |
2 | TraesCS5A01G008600 | chr5B | 37370947 | 37376917 | 5970 | False | 1781.75 | 4924 | 92.88125 | 35 | 5062 | 4 | chr5B.!!$F5 | 5027 |
3 | TraesCS5A01G008600 | chr5B | 32564932 | 32565796 | 864 | False | 904.00 | 904 | 85.55400 | 814 | 1700 | 1 | chr5B.!!$F2 | 886 |
4 | TraesCS5A01G008600 | chr5B | 37265462 | 37266126 | 664 | True | 793.00 | 793 | 88.27000 | 4389 | 5061 | 1 | chr5B.!!$R3 | 672 |
5 | TraesCS5A01G008600 | chr5B | 32422987 | 32423772 | 785 | False | 789.00 | 789 | 84.74800 | 784 | 1595 | 1 | chr5B.!!$F1 | 811 |
6 | TraesCS5A01G008600 | chr5B | 7861657 | 7862673 | 1016 | True | 473.00 | 473 | 75.94700 | 1250 | 2269 | 1 | chr5B.!!$R1 | 1019 |
7 | TraesCS5A01G008600 | chr5B | 32646999 | 32648363 | 1364 | False | 425.00 | 593 | 88.28800 | 3448 | 4184 | 2 | chr5B.!!$F4 | 736 |
8 | TraesCS5A01G008600 | chr5D | 7493050 | 7494063 | 1013 | False | 464.00 | 464 | 75.87200 | 1281 | 2305 | 1 | chr5D.!!$F1 | 1024 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
272 | 273 | 0.108138 | CATGGACGAACCCAGAGACC | 60.108 | 60.000 | 0.00 | 0.00 | 39.97 | 3.85 | F |
1089 | 1264 | 0.107703 | TGATTCGCGCAAAGGATCCT | 60.108 | 50.000 | 9.02 | 9.02 | 0.00 | 3.24 | F |
1345 | 1520 | 1.050204 | AACACAACCGTACTAGGCCA | 58.950 | 50.000 | 5.01 | 0.00 | 33.69 | 5.36 | F |
2323 | 2531 | 1.338389 | ACGTCAGATTGGGTTAACGGG | 60.338 | 52.381 | 0.00 | 0.00 | 34.63 | 5.28 | F |
3583 | 3805 | 0.106217 | GAGGGAGAGGGAGAGGAGTG | 60.106 | 65.000 | 0.00 | 0.00 | 0.00 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1345 | 1520 | 0.396974 | CTCCTGCAGGTAGAGGAGCT | 60.397 | 60.0 | 31.58 | 0.00 | 46.90 | 4.09 | R |
2973 | 3185 | 0.179040 | TGGAGACCGGTGAAAACCAC | 60.179 | 55.0 | 14.63 | 0.00 | 44.95 | 4.16 | R |
3058 | 3270 | 2.600470 | TTCGTGTAGTTTTCACCGGT | 57.400 | 45.0 | 0.00 | 0.00 | 32.86 | 5.28 | R |
3586 | 3808 | 0.452287 | CGACCACGTGTACTCACTCG | 60.452 | 60.0 | 15.65 | 5.02 | 44.92 | 4.18 | R |
4608 | 6355 | 0.456824 | TCGACTTGCTCACATCGCTC | 60.457 | 55.0 | 0.00 | 0.00 | 34.59 | 5.03 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 4.260355 | CGCATGCCATTCAGCGGG | 62.260 | 66.667 | 13.15 | 0.00 | 45.83 | 6.13 |
20 | 21 | 3.908081 | GCATGCCATTCAGCGGGG | 61.908 | 66.667 | 6.36 | 0.00 | 34.65 | 5.73 |
21 | 22 | 2.124193 | CATGCCATTCAGCGGGGA | 60.124 | 61.111 | 0.00 | 0.00 | 34.65 | 4.81 |
22 | 23 | 1.753848 | CATGCCATTCAGCGGGGAA | 60.754 | 57.895 | 0.00 | 0.00 | 34.65 | 3.97 |
23 | 24 | 1.454479 | ATGCCATTCAGCGGGGAAG | 60.454 | 57.895 | 0.00 | 0.00 | 34.65 | 3.46 |
24 | 25 | 2.830370 | GCCATTCAGCGGGGAAGG | 60.830 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
25 | 26 | 2.124151 | CCATTCAGCGGGGAAGGG | 60.124 | 66.667 | 5.38 | 5.38 | 41.67 | 3.95 |
26 | 27 | 2.124151 | CATTCAGCGGGGAAGGGG | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
27 | 28 | 2.614013 | ATTCAGCGGGGAAGGGGT | 60.614 | 61.111 | 0.00 | 0.00 | 0.00 | 4.95 |
28 | 29 | 2.680370 | ATTCAGCGGGGAAGGGGTC | 61.680 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
49 | 50 | 1.578618 | CAAGCGCACGATCGAAAGC | 60.579 | 57.895 | 24.34 | 21.40 | 0.00 | 3.51 |
60 | 61 | 2.456000 | TCGAAAGCGATGCCAAGAC | 58.544 | 52.632 | 0.00 | 0.00 | 42.51 | 3.01 |
71 | 72 | 4.012895 | CCAAGACGCGCACGCTTT | 62.013 | 61.111 | 13.70 | 0.00 | 45.53 | 3.51 |
94 | 95 | 4.526770 | GGTGCGCCGGTAGTAAAT | 57.473 | 55.556 | 4.18 | 0.00 | 0.00 | 1.40 |
130 | 131 | 1.251527 | ACGAGCCGAACCAGTCTCAT | 61.252 | 55.000 | 1.50 | 0.00 | 0.00 | 2.90 |
131 | 132 | 0.803768 | CGAGCCGAACCAGTCTCATG | 60.804 | 60.000 | 0.00 | 0.00 | 0.00 | 3.07 |
134 | 135 | 1.204941 | AGCCGAACCAGTCTCATGTAC | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
240 | 241 | 8.186163 | GGAAGAAAAGAGGAAAACGTTCTAAAA | 58.814 | 33.333 | 0.00 | 0.00 | 33.92 | 1.52 |
267 | 268 | 0.251165 | AAACCCATGGACGAACCCAG | 60.251 | 55.000 | 15.22 | 0.00 | 39.97 | 4.45 |
272 | 273 | 0.108138 | CATGGACGAACCCAGAGACC | 60.108 | 60.000 | 0.00 | 0.00 | 39.97 | 3.85 |
322 | 323 | 3.123621 | CACGAGATGAGAAACCCTTTTCG | 59.876 | 47.826 | 0.00 | 0.00 | 45.15 | 3.46 |
363 | 364 | 4.427394 | GGCGCACGAGATGAGAAT | 57.573 | 55.556 | 10.83 | 0.00 | 0.00 | 2.40 |
380 | 381 | 0.982852 | AATGATGTCGAGGGCCTCCA | 60.983 | 55.000 | 27.36 | 20.21 | 34.83 | 3.86 |
381 | 382 | 1.406065 | ATGATGTCGAGGGCCTCCAG | 61.406 | 60.000 | 27.36 | 14.74 | 34.83 | 3.86 |
382 | 383 | 2.765807 | ATGTCGAGGGCCTCCAGG | 60.766 | 66.667 | 27.36 | 13.99 | 38.53 | 4.45 |
383 | 384 | 3.317436 | ATGTCGAGGGCCTCCAGGA | 62.317 | 63.158 | 27.36 | 16.17 | 37.39 | 3.86 |
384 | 385 | 2.444895 | GTCGAGGGCCTCCAGGAT | 60.445 | 66.667 | 27.36 | 0.00 | 37.39 | 3.24 |
385 | 386 | 2.123251 | TCGAGGGCCTCCAGGATC | 60.123 | 66.667 | 27.36 | 1.97 | 37.39 | 3.36 |
450 | 451 | 1.306482 | TGGCAGAGGAAGAGGAGGG | 60.306 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
451 | 452 | 2.069430 | GGCAGAGGAAGAGGAGGGG | 61.069 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
452 | 453 | 2.069430 | GCAGAGGAAGAGGAGGGGG | 61.069 | 68.421 | 0.00 | 0.00 | 0.00 | 5.40 |
453 | 454 | 1.394151 | CAGAGGAAGAGGAGGGGGT | 59.606 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
454 | 455 | 0.637195 | CAGAGGAAGAGGAGGGGGTA | 59.363 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
455 | 456 | 0.938192 | AGAGGAAGAGGAGGGGGTAG | 59.062 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
456 | 457 | 0.935194 | GAGGAAGAGGAGGGGGTAGA | 59.065 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
457 | 458 | 1.505977 | GAGGAAGAGGAGGGGGTAGAT | 59.494 | 57.143 | 0.00 | 0.00 | 0.00 | 1.98 |
458 | 459 | 1.505977 | AGGAAGAGGAGGGGGTAGATC | 59.494 | 57.143 | 0.00 | 0.00 | 0.00 | 2.75 |
459 | 460 | 1.505977 | GGAAGAGGAGGGGGTAGATCT | 59.494 | 57.143 | 0.00 | 0.00 | 0.00 | 2.75 |
460 | 461 | 2.492010 | GGAAGAGGAGGGGGTAGATCTC | 60.492 | 59.091 | 0.00 | 0.00 | 0.00 | 2.75 |
461 | 462 | 1.163408 | AGAGGAGGGGGTAGATCTCC | 58.837 | 60.000 | 0.00 | 0.06 | 45.46 | 3.71 |
463 | 464 | 3.151048 | GGAGGGGGTAGATCTCCAC | 57.849 | 63.158 | 0.00 | 1.28 | 44.72 | 4.02 |
464 | 465 | 0.563672 | GGAGGGGGTAGATCTCCACT | 59.436 | 60.000 | 4.90 | 4.90 | 44.72 | 4.00 |
465 | 466 | 2.003937 | GAGGGGGTAGATCTCCACTC | 57.996 | 60.000 | 15.10 | 15.10 | 45.08 | 3.51 |
466 | 467 | 0.563672 | AGGGGGTAGATCTCCACTCC | 59.436 | 60.000 | 6.03 | 6.03 | 38.77 | 3.85 |
467 | 468 | 0.264955 | GGGGGTAGATCTCCACTCCA | 59.735 | 60.000 | 15.17 | 0.00 | 37.00 | 3.86 |
468 | 469 | 1.415200 | GGGGTAGATCTCCACTCCAC | 58.585 | 60.000 | 9.38 | 0.00 | 35.20 | 4.02 |
469 | 470 | 1.033574 | GGGTAGATCTCCACTCCACG | 58.966 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
470 | 471 | 1.409802 | GGGTAGATCTCCACTCCACGA | 60.410 | 57.143 | 0.00 | 0.00 | 0.00 | 4.35 |
471 | 472 | 1.950909 | GGTAGATCTCCACTCCACGAG | 59.049 | 57.143 | 0.00 | 0.00 | 35.52 | 4.18 |
472 | 473 | 1.335496 | GTAGATCTCCACTCCACGAGC | 59.665 | 57.143 | 0.00 | 0.00 | 32.04 | 5.03 |
473 | 474 | 1.040339 | AGATCTCCACTCCACGAGCC | 61.040 | 60.000 | 0.00 | 0.00 | 32.04 | 4.70 |
474 | 475 | 2.022240 | GATCTCCACTCCACGAGCCC | 62.022 | 65.000 | 0.00 | 0.00 | 32.04 | 5.19 |
475 | 476 | 2.522198 | ATCTCCACTCCACGAGCCCT | 62.522 | 60.000 | 0.00 | 0.00 | 32.04 | 5.19 |
476 | 477 | 1.379977 | CTCCACTCCACGAGCCCTA | 60.380 | 63.158 | 0.00 | 0.00 | 32.04 | 3.53 |
477 | 478 | 1.379977 | TCCACTCCACGAGCCCTAG | 60.380 | 63.158 | 0.00 | 0.00 | 32.04 | 3.02 |
478 | 479 | 1.379977 | CCACTCCACGAGCCCTAGA | 60.380 | 63.158 | 0.00 | 0.00 | 32.04 | 2.43 |
479 | 480 | 0.757188 | CCACTCCACGAGCCCTAGAT | 60.757 | 60.000 | 0.00 | 0.00 | 32.04 | 1.98 |
480 | 481 | 0.671251 | CACTCCACGAGCCCTAGATC | 59.329 | 60.000 | 0.00 | 0.00 | 32.04 | 2.75 |
481 | 482 | 0.553819 | ACTCCACGAGCCCTAGATCT | 59.446 | 55.000 | 0.00 | 0.00 | 32.04 | 2.75 |
482 | 483 | 1.243902 | CTCCACGAGCCCTAGATCTC | 58.756 | 60.000 | 0.00 | 0.00 | 0.00 | 2.75 |
483 | 484 | 0.178987 | TCCACGAGCCCTAGATCTCC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
484 | 485 | 0.178975 | CCACGAGCCCTAGATCTCCT | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
485 | 486 | 0.958091 | CACGAGCCCTAGATCTCCTG | 59.042 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
486 | 487 | 0.847373 | ACGAGCCCTAGATCTCCTGA | 59.153 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
487 | 488 | 1.243902 | CGAGCCCTAGATCTCCTGAC | 58.756 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
488 | 489 | 1.243902 | GAGCCCTAGATCTCCTGACG | 58.756 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
489 | 490 | 0.847373 | AGCCCTAGATCTCCTGACGA | 59.153 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
490 | 491 | 1.202879 | AGCCCTAGATCTCCTGACGAG | 60.203 | 57.143 | 0.00 | 0.00 | 40.30 | 4.18 |
491 | 492 | 1.243902 | CCCTAGATCTCCTGACGAGC | 58.756 | 60.000 | 0.00 | 0.00 | 38.62 | 5.03 |
512 | 513 | 0.179000 | AGCTGGTCGAACATCCCATC | 59.821 | 55.000 | 2.20 | 0.00 | 0.00 | 3.51 |
545 | 546 | 3.777925 | CGGCCTTTGAGCACGACG | 61.778 | 66.667 | 0.00 | 0.00 | 0.00 | 5.12 |
734 | 735 | 1.544093 | CCCTACATACCCGACGAGCTA | 60.544 | 57.143 | 0.00 | 0.00 | 0.00 | 3.32 |
747 | 748 | 1.074084 | ACGAGCTAGCTGATAGGGCTA | 59.926 | 52.381 | 24.99 | 0.00 | 40.74 | 3.93 |
810 | 978 | 1.284982 | CGTGCTTGTTCTCTGACCCG | 61.285 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1089 | 1264 | 0.107703 | TGATTCGCGCAAAGGATCCT | 60.108 | 50.000 | 9.02 | 9.02 | 0.00 | 3.24 |
1160 | 1335 | 3.182152 | AGGCTAAGGTGAGCTTCCTAAA | 58.818 | 45.455 | 0.00 | 3.69 | 42.43 | 1.85 |
1161 | 1336 | 3.198853 | AGGCTAAGGTGAGCTTCCTAAAG | 59.801 | 47.826 | 0.00 | 11.96 | 42.43 | 1.85 |
1162 | 1337 | 3.055021 | GGCTAAGGTGAGCTTCCTAAAGT | 60.055 | 47.826 | 0.00 | 0.38 | 42.43 | 2.66 |
1163 | 1338 | 4.565861 | GGCTAAGGTGAGCTTCCTAAAGTT | 60.566 | 45.833 | 0.00 | 0.07 | 42.43 | 2.66 |
1164 | 1339 | 5.004448 | GCTAAGGTGAGCTTCCTAAAGTTT | 58.996 | 41.667 | 0.00 | 0.00 | 39.50 | 2.66 |
1235 | 1410 | 8.420222 | AGACTTTCCTGATAGTTGATATCACAG | 58.580 | 37.037 | 4.48 | 8.92 | 44.33 | 3.66 |
1242 | 1417 | 7.866898 | CCTGATAGTTGATATCACAGAACTCTG | 59.133 | 40.741 | 17.50 | 5.15 | 44.33 | 3.35 |
1294 | 1469 | 1.454653 | GTGACGTAACTTTCACCGCTC | 59.545 | 52.381 | 0.00 | 0.00 | 36.85 | 5.03 |
1345 | 1520 | 1.050204 | AACACAACCGTACTAGGCCA | 58.950 | 50.000 | 5.01 | 0.00 | 33.69 | 5.36 |
1410 | 1585 | 4.082245 | AGGTTGAAGTTGACAAACCAGTTG | 60.082 | 41.667 | 8.36 | 0.00 | 43.43 | 3.16 |
1618 | 1797 | 8.610248 | TTCACTTTATGTTTTCTATTCCGACA | 57.390 | 30.769 | 0.00 | 0.00 | 0.00 | 4.35 |
1848 | 2030 | 8.836413 | CCTATTGTTCTTTGTTAGTTCTGTTGA | 58.164 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1872 | 2054 | 7.979537 | TGAGTAATACACATGTCTTGTATGGTC | 59.020 | 37.037 | 7.90 | 6.44 | 39.58 | 4.02 |
1881 | 2063 | 8.676401 | CACATGTCTTGTATGGTCAATAATTCA | 58.324 | 33.333 | 0.00 | 0.00 | 36.57 | 2.57 |
2054 | 2246 | 7.921786 | TTGGTCTTATTGTTGAGAAGGTATG | 57.078 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2191 | 2399 | 6.885918 | TCATATGCTGAGAAACTTGGAATCAA | 59.114 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2259 | 2467 | 4.114058 | ACAATTGAGGTATGTGCATTGC | 57.886 | 40.909 | 13.59 | 0.46 | 0.00 | 3.56 |
2288 | 2496 | 8.815565 | TTTATTAGTTACTTGCCAATCCATCA | 57.184 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
2305 | 2513 | 6.286240 | TCCATCATAGATTAATCTCCCACG | 57.714 | 41.667 | 21.17 | 8.78 | 38.32 | 4.94 |
2312 | 2520 | 5.878406 | AGATTAATCTCCCACGTCAGATT | 57.122 | 39.130 | 12.37 | 15.01 | 41.35 | 2.40 |
2323 | 2531 | 1.338389 | ACGTCAGATTGGGTTAACGGG | 60.338 | 52.381 | 0.00 | 0.00 | 34.63 | 5.28 |
2328 | 2536 | 2.888414 | CAGATTGGGTTAACGGGTTGTT | 59.112 | 45.455 | 0.00 | 0.00 | 44.78 | 2.83 |
2334 | 2542 | 5.197682 | TGGGTTAACGGGTTGTTTTATTG | 57.802 | 39.130 | 0.00 | 0.00 | 42.09 | 1.90 |
2405 | 2613 | 8.205512 | TCTAGTTAATGTGGTGTTAGTTCAACA | 58.794 | 33.333 | 0.00 | 0.00 | 44.97 | 3.33 |
2415 | 2623 | 4.798882 | TGTTAGTTCAACAACCTCCCAAT | 58.201 | 39.130 | 0.00 | 0.00 | 44.20 | 3.16 |
2421 | 2629 | 4.870123 | TCAACAACCTCCCAATTCATTG | 57.130 | 40.909 | 0.00 | 0.00 | 37.52 | 2.82 |
2501 | 2711 | 7.444629 | TCAATTTGATGGAAGAGCATATAGC | 57.555 | 36.000 | 0.00 | 0.00 | 46.19 | 2.97 |
2522 | 2732 | 3.799366 | CTTACATTATACGGTGGGCACA | 58.201 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2552 | 2762 | 6.971726 | TCCCGTAGCTAAGATCAAATAAGA | 57.028 | 37.500 | 8.37 | 0.00 | 0.00 | 2.10 |
2604 | 2814 | 7.679453 | TGTTAAATTGTACTTCTAGGGGGAGTA | 59.321 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2605 | 2815 | 8.712103 | GTTAAATTGTACTTCTAGGGGGAGTAT | 58.288 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2727 | 2938 | 9.678941 | TGATGTTCATTTGATAGTATCGAGTAC | 57.321 | 33.333 | 5.68 | 0.00 | 0.00 | 2.73 |
2728 | 2939 | 9.678941 | GATGTTCATTTGATAGTATCGAGTACA | 57.321 | 33.333 | 5.68 | 3.89 | 35.67 | 2.90 |
2799 | 3010 | 9.247861 | AGTATGGAGCTATGAAAAAGACAAATT | 57.752 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2809 | 3020 | 7.703298 | TGAAAAAGACAAATTCAGCAATGAG | 57.297 | 32.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2812 | 3023 | 8.807667 | AAAAAGACAAATTCAGCAATGAGTAG | 57.192 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2814 | 3025 | 6.492007 | AGACAAATTCAGCAATGAGTAGTG | 57.508 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2815 | 3026 | 6.233434 | AGACAAATTCAGCAATGAGTAGTGA | 58.767 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2816 | 3027 | 6.148480 | AGACAAATTCAGCAATGAGTAGTGAC | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
2817 | 3028 | 5.764686 | ACAAATTCAGCAATGAGTAGTGACA | 59.235 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2818 | 3029 | 6.432162 | ACAAATTCAGCAATGAGTAGTGACAT | 59.568 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2819 | 3030 | 7.040201 | ACAAATTCAGCAATGAGTAGTGACATT | 60.040 | 33.333 | 0.00 | 0.00 | 37.22 | 2.71 |
2820 | 3031 | 8.453320 | CAAATTCAGCAATGAGTAGTGACATTA | 58.547 | 33.333 | 0.00 | 0.00 | 35.39 | 1.90 |
2821 | 3032 | 6.968131 | TTCAGCAATGAGTAGTGACATTAC | 57.032 | 37.500 | 0.00 | 0.00 | 35.39 | 1.89 |
2822 | 3033 | 6.286240 | TCAGCAATGAGTAGTGACATTACT | 57.714 | 37.500 | 10.16 | 10.16 | 35.39 | 2.24 |
2823 | 3034 | 6.101997 | TCAGCAATGAGTAGTGACATTACTG | 58.898 | 40.000 | 14.71 | 0.00 | 43.48 | 2.74 |
2824 | 3035 | 5.871524 | CAGCAATGAGTAGTGACATTACTGT | 59.128 | 40.000 | 14.71 | 1.84 | 40.27 | 3.55 |
2825 | 3036 | 6.369890 | CAGCAATGAGTAGTGACATTACTGTT | 59.630 | 38.462 | 14.71 | 7.27 | 40.27 | 3.16 |
2826 | 3037 | 6.936900 | AGCAATGAGTAGTGACATTACTGTTT | 59.063 | 34.615 | 14.71 | 5.99 | 35.14 | 2.83 |
2827 | 3038 | 7.017645 | GCAATGAGTAGTGACATTACTGTTTG | 58.982 | 38.462 | 14.71 | 16.17 | 35.14 | 2.93 |
2828 | 3039 | 7.521529 | CAATGAGTAGTGACATTACTGTTTGG | 58.478 | 38.462 | 14.71 | 0.00 | 35.14 | 3.28 |
2860 | 3072 | 8.975410 | TGAATGCTGATTTGTCTTTTTCATAG | 57.025 | 30.769 | 0.00 | 0.00 | 0.00 | 2.23 |
2868 | 3080 | 8.239314 | TGATTTGTCTTTTTCATAGCTCACATC | 58.761 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2871 | 3083 | 4.034510 | GTCTTTTTCATAGCTCACATCCCG | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 5.14 |
2928 | 3140 | 5.104259 | AGAACATCACCCTCTTAACATCC | 57.896 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2945 | 3157 | 9.987272 | CTTAACATCCCTTCTTTTGAGATTTTT | 57.013 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2973 | 3185 | 3.537806 | AGTTCAAAACATCGTTTACGCG | 58.462 | 40.909 | 3.53 | 3.53 | 39.60 | 6.01 |
2984 | 3196 | 1.745566 | GTTTACGCGTGGTTTTCACC | 58.254 | 50.000 | 24.59 | 0.00 | 43.23 | 4.02 |
3024 | 3236 | 5.880164 | TGTTTCCGTATGATATTCTCCCA | 57.120 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
3042 | 3254 | 3.721087 | CCAGGTTATGGGAGAACAAGT | 57.279 | 47.619 | 0.00 | 0.00 | 46.36 | 3.16 |
3058 | 3270 | 3.283751 | ACAAGTCAACATTCGGTGGAAA | 58.716 | 40.909 | 0.00 | 0.00 | 35.40 | 3.13 |
3059 | 3271 | 3.066203 | ACAAGTCAACATTCGGTGGAAAC | 59.934 | 43.478 | 0.00 | 0.00 | 35.40 | 2.78 |
3060 | 3272 | 2.227194 | AGTCAACATTCGGTGGAAACC | 58.773 | 47.619 | 0.00 | 0.00 | 35.40 | 3.27 |
3073 | 3285 | 2.944349 | GTGGAAACCGGTGAAAACTACA | 59.056 | 45.455 | 8.52 | 0.00 | 0.00 | 2.74 |
3075 | 3287 | 2.032636 | GGAAACCGGTGAAAACTACACG | 60.033 | 50.000 | 8.52 | 0.00 | 38.90 | 4.49 |
3096 | 3311 | 8.918961 | ACACGAAAATATGTTTCAAAGTTTCA | 57.081 | 26.923 | 0.00 | 0.00 | 0.00 | 2.69 |
3143 | 3358 | 2.173569 | AGAGGGTGATGTTCTATTGCCC | 59.826 | 50.000 | 0.00 | 0.00 | 35.04 | 5.36 |
3174 | 3389 | 6.869315 | TTTCAGATTCAAACACATTACGGA | 57.131 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
3271 | 3487 | 1.739466 | TGTCTTTCCATTGCTCGCATC | 59.261 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
3273 | 3489 | 0.383231 | CTTTCCATTGCTCGCATCCC | 59.617 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3281 | 3497 | 3.945981 | TTGCTCGCATCCCGTAATATA | 57.054 | 42.857 | 0.00 | 0.00 | 38.35 | 0.86 |
3284 | 3500 | 3.194755 | TGCTCGCATCCCGTAATATATGT | 59.805 | 43.478 | 0.00 | 0.00 | 38.35 | 2.29 |
3392 | 3608 | 9.883142 | TTCAAACATAGTTTCCATGAAGTTTTT | 57.117 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
3417 | 3633 | 7.689446 | TTTGAATGTTGGTTTCCGTATGATA | 57.311 | 32.000 | 0.00 | 0.00 | 0.00 | 2.15 |
3418 | 3634 | 7.873719 | TTGAATGTTGGTTTCCGTATGATAT | 57.126 | 32.000 | 0.00 | 0.00 | 0.00 | 1.63 |
3419 | 3635 | 7.873719 | TGAATGTTGGTTTCCGTATGATATT | 57.126 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3472 | 3688 | 7.285401 | CCATGGGTTATACAGTATGCTCTTTTT | 59.715 | 37.037 | 2.85 | 0.00 | 42.53 | 1.94 |
3482 | 3698 | 0.555769 | TGCTCTTTTTGGGGAGGTGT | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3515 | 3736 | 7.477144 | TGAAATATCTGTTGTAGCCATTACG | 57.523 | 36.000 | 0.00 | 0.00 | 34.87 | 3.18 |
3521 | 3742 | 6.656314 | TCTGTTGTAGCCATTACGTATTTG | 57.344 | 37.500 | 0.00 | 0.00 | 34.87 | 2.32 |
3574 | 3796 | 1.541672 | GAGAGGGAGAGGGAGAGGG | 59.458 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
3575 | 3797 | 0.996762 | GAGAGGGAGAGGGAGAGGGA | 60.997 | 65.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3576 | 3798 | 0.998945 | AGAGGGAGAGGGAGAGGGAG | 60.999 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3577 | 3799 | 0.996762 | GAGGGAGAGGGAGAGGGAGA | 60.997 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3578 | 3800 | 0.998945 | AGGGAGAGGGAGAGGGAGAG | 60.999 | 65.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3580 | 3802 | 0.996762 | GGAGAGGGAGAGGGAGAGGA | 60.997 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3582 | 3804 | 0.254107 | AGAGGGAGAGGGAGAGGAGT | 60.254 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3583 | 3805 | 0.106217 | GAGGGAGAGGGAGAGGAGTG | 60.106 | 65.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3584 | 3806 | 0.553862 | AGGGAGAGGGAGAGGAGTGA | 60.554 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3585 | 3807 | 0.560688 | GGGAGAGGGAGAGGAGTGAT | 59.439 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3586 | 3808 | 1.480498 | GGGAGAGGGAGAGGAGTGATC | 60.480 | 61.905 | 0.00 | 0.00 | 0.00 | 2.92 |
3587 | 3809 | 1.604604 | GAGAGGGAGAGGAGTGATCG | 58.395 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3588 | 3810 | 1.142060 | GAGAGGGAGAGGAGTGATCGA | 59.858 | 57.143 | 0.00 | 0.00 | 0.00 | 3.59 |
3665 | 3888 | 8.515414 | GTGACAGACTCTTGGCTTTTATAATTT | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3926 | 4149 | 7.154656 | CCGTAATTGTATCTGATCATGGAGAA | 58.845 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
4004 | 4862 | 6.367374 | TCACCTTGAAGTCATTGGTGTATA | 57.633 | 37.500 | 22.39 | 9.84 | 44.15 | 1.47 |
4167 | 5031 | 8.211181 | CGAGTCTTAATTTATCGCATTTCTCTC | 58.789 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
4228 | 5971 | 3.716353 | TCACTTATATCACCATGGCAGGT | 59.284 | 43.478 | 13.04 | 3.36 | 44.48 | 4.00 |
4250 | 5993 | 5.050159 | GGTCCAGCACAAATCAATTTTGAAC | 60.050 | 40.000 | 5.17 | 0.00 | 46.36 | 3.18 |
4314 | 6058 | 4.696479 | ATAGTAAAGACTGGGAGCATGG | 57.304 | 45.455 | 0.00 | 0.00 | 36.28 | 3.66 |
4358 | 6102 | 4.280929 | GCAGGGGAAAGTAACAATCAAGTT | 59.719 | 41.667 | 0.00 | 0.00 | 35.55 | 2.66 |
4411 | 6155 | 4.814771 | TGCATGAAGAATAGTGATGCTCAG | 59.185 | 41.667 | 0.00 | 0.00 | 40.11 | 3.35 |
4418 | 6162 | 3.876274 | ATAGTGATGCTCAGACGTTGT | 57.124 | 42.857 | 0.00 | 0.00 | 0.00 | 3.32 |
4433 | 6177 | 1.242076 | GTTGTTGGTGCAGATCAGCT | 58.758 | 50.000 | 11.68 | 0.00 | 43.32 | 4.24 |
4437 | 6181 | 4.215349 | GGTGCAGATCAGCTCCAC | 57.785 | 61.111 | 22.08 | 8.15 | 45.15 | 4.02 |
4445 | 6189 | 1.411977 | AGATCAGCTCCACGATCAAGG | 59.588 | 52.381 | 12.75 | 0.00 | 40.45 | 3.61 |
4483 | 6230 | 3.716353 | AGGTGGACATTAGTGATGGCATA | 59.284 | 43.478 | 0.00 | 0.00 | 46.30 | 3.14 |
4593 | 6340 | 9.656323 | TTAGCTAGGATCTAAAAGGACTGAATA | 57.344 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
4607 | 6354 | 4.651045 | GGACTGAATAAAATGGATTGCCCT | 59.349 | 41.667 | 0.00 | 0.00 | 35.38 | 5.19 |
4608 | 6355 | 5.452356 | GGACTGAATAAAATGGATTGCCCTG | 60.452 | 44.000 | 0.00 | 0.00 | 35.38 | 4.45 |
4609 | 6356 | 5.271598 | ACTGAATAAAATGGATTGCCCTGA | 58.728 | 37.500 | 0.00 | 0.00 | 35.38 | 3.86 |
4610 | 6357 | 5.361857 | ACTGAATAAAATGGATTGCCCTGAG | 59.638 | 40.000 | 0.00 | 0.00 | 35.38 | 3.35 |
4611 | 6358 | 4.099881 | TGAATAAAATGGATTGCCCTGAGC | 59.900 | 41.667 | 0.00 | 0.00 | 44.14 | 4.26 |
4615 | 6362 | 0.536687 | ATGGATTGCCCTGAGCGATG | 60.537 | 55.000 | 0.00 | 0.00 | 46.27 | 3.84 |
4616 | 6363 | 1.153086 | GGATTGCCCTGAGCGATGT | 60.153 | 57.895 | 0.00 | 0.00 | 46.27 | 3.06 |
4617 | 6364 | 1.442526 | GGATTGCCCTGAGCGATGTG | 61.443 | 60.000 | 0.00 | 0.00 | 46.27 | 3.21 |
4618 | 6365 | 0.462581 | GATTGCCCTGAGCGATGTGA | 60.463 | 55.000 | 0.00 | 0.00 | 46.27 | 3.58 |
4649 | 6398 | 3.567164 | ACGTCGATATTAACCTCGTCCAT | 59.433 | 43.478 | 0.00 | 0.00 | 36.33 | 3.41 |
4652 | 6401 | 5.619309 | CGTCGATATTAACCTCGTCCATGAT | 60.619 | 44.000 | 0.00 | 0.00 | 36.33 | 2.45 |
4656 | 6405 | 9.350951 | TCGATATTAACCTCGTCCATGATATAT | 57.649 | 33.333 | 0.00 | 0.00 | 36.33 | 0.86 |
4665 | 6414 | 6.378564 | CCTCGTCCATGATATATTGGTAGACT | 59.621 | 42.308 | 0.00 | 0.00 | 34.48 | 3.24 |
4667 | 6416 | 6.946009 | TCGTCCATGATATATTGGTAGACTGA | 59.054 | 38.462 | 0.00 | 1.34 | 34.48 | 3.41 |
4691 | 6443 | 4.643387 | GCCAAGACCACCTGCGGT | 62.643 | 66.667 | 0.00 | 0.00 | 43.91 | 5.68 |
4904 | 6656 | 1.992557 | TCCCTGTTAATGCCTCAACCT | 59.007 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
4905 | 6657 | 3.186283 | TCCCTGTTAATGCCTCAACCTA | 58.814 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
4906 | 6658 | 3.785887 | TCCCTGTTAATGCCTCAACCTAT | 59.214 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4907 | 6659 | 4.972568 | TCCCTGTTAATGCCTCAACCTATA | 59.027 | 41.667 | 0.00 | 0.00 | 0.00 | 1.31 |
5013 | 6770 | 4.078363 | AGTTTGTTCGTGTTGTTGACTG | 57.922 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 4.918129 | CCGCTGAATGGCATGCGC | 62.918 | 66.667 | 21.12 | 15.98 | 40.41 | 6.09 |
2 | 3 | 4.260355 | CCCGCTGAATGGCATGCG | 62.260 | 66.667 | 19.99 | 19.99 | 40.98 | 4.73 |
3 | 4 | 3.908081 | CCCCGCTGAATGGCATGC | 61.908 | 66.667 | 9.90 | 9.90 | 0.00 | 4.06 |
4 | 5 | 1.731433 | CTTCCCCGCTGAATGGCATG | 61.731 | 60.000 | 0.00 | 0.00 | 0.00 | 4.06 |
5 | 6 | 1.454479 | CTTCCCCGCTGAATGGCAT | 60.454 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
6 | 7 | 2.045045 | CTTCCCCGCTGAATGGCA | 60.045 | 61.111 | 0.00 | 0.00 | 0.00 | 4.92 |
7 | 8 | 2.830370 | CCTTCCCCGCTGAATGGC | 60.830 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
8 | 9 | 2.124151 | CCCTTCCCCGCTGAATGG | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
9 | 10 | 2.124151 | CCCCTTCCCCGCTGAATG | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 2.67 |
10 | 11 | 2.614013 | ACCCCTTCCCCGCTGAAT | 60.614 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
11 | 12 | 3.327404 | GACCCCTTCCCCGCTGAA | 61.327 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
17 | 18 | 4.426313 | CTTGGCGACCCCTTCCCC | 62.426 | 72.222 | 0.00 | 0.00 | 0.00 | 4.81 |
29 | 30 | 2.886512 | CTTTCGATCGTGCGCTTGGC | 62.887 | 60.000 | 15.94 | 0.00 | 43.96 | 4.52 |
30 | 31 | 1.059369 | CTTTCGATCGTGCGCTTGG | 59.941 | 57.895 | 15.94 | 0.00 | 0.00 | 3.61 |
31 | 32 | 1.578618 | GCTTTCGATCGTGCGCTTG | 60.579 | 57.895 | 15.94 | 0.00 | 0.00 | 4.01 |
32 | 33 | 2.778679 | GCTTTCGATCGTGCGCTT | 59.221 | 55.556 | 15.94 | 0.00 | 0.00 | 4.68 |
33 | 34 | 3.545481 | CGCTTTCGATCGTGCGCT | 61.545 | 61.111 | 27.61 | 0.00 | 41.85 | 5.92 |
49 | 50 | 4.505217 | GTGCGCGTCTTGGCATCG | 62.505 | 66.667 | 8.43 | 0.00 | 41.83 | 3.84 |
77 | 78 | 0.741927 | ACATTTACTACCGGCGCACC | 60.742 | 55.000 | 10.83 | 0.00 | 0.00 | 5.01 |
78 | 79 | 1.081094 | AACATTTACTACCGGCGCAC | 58.919 | 50.000 | 10.83 | 0.00 | 0.00 | 5.34 |
79 | 80 | 1.733360 | GAAACATTTACTACCGGCGCA | 59.267 | 47.619 | 10.83 | 0.00 | 0.00 | 6.09 |
94 | 95 | 4.022676 | GGCTCGTTTTGATTTAGGGAAACA | 60.023 | 41.667 | 0.00 | 0.00 | 32.91 | 2.83 |
112 | 113 | 0.803768 | CATGAGACTGGTTCGGCTCG | 60.804 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
130 | 131 | 2.663520 | CCAGCGCAACACCGTACA | 60.664 | 61.111 | 11.47 | 0.00 | 0.00 | 2.90 |
131 | 132 | 2.663852 | ACCAGCGCAACACCGTAC | 60.664 | 61.111 | 11.47 | 0.00 | 0.00 | 3.67 |
240 | 241 | 3.301274 | TCGTCCATGGGTTTTCCTTTTT | 58.699 | 40.909 | 13.02 | 0.00 | 40.46 | 1.94 |
252 | 253 | 0.108138 | GTCTCTGGGTTCGTCCATGG | 60.108 | 60.000 | 4.97 | 4.97 | 36.05 | 3.66 |
267 | 268 | 3.450115 | CCACGTCGAGGGGGTCTC | 61.450 | 72.222 | 18.38 | 0.00 | 40.70 | 3.36 |
363 | 364 | 2.038813 | TGGAGGCCCTCGACATCA | 59.961 | 61.111 | 4.29 | 0.00 | 0.00 | 3.07 |
380 | 381 | 2.203771 | GGTCATCGCCGAGGATCCT | 61.204 | 63.158 | 16.13 | 16.13 | 0.00 | 3.24 |
381 | 382 | 2.340443 | GGTCATCGCCGAGGATCC | 59.660 | 66.667 | 4.25 | 2.48 | 0.00 | 3.36 |
382 | 383 | 2.340443 | GGGTCATCGCCGAGGATC | 59.660 | 66.667 | 4.25 | 3.57 | 0.00 | 3.36 |
383 | 384 | 3.606662 | CGGGTCATCGCCGAGGAT | 61.607 | 66.667 | 4.25 | 0.00 | 32.09 | 3.24 |
408 | 409 | 4.760047 | GCCTCTTCGCTTCCCGCA | 62.760 | 66.667 | 0.00 | 0.00 | 39.08 | 5.69 |
450 | 451 | 1.033574 | CGTGGAGTGGAGATCTACCC | 58.966 | 60.000 | 1.43 | 0.00 | 0.00 | 3.69 |
451 | 452 | 1.950909 | CTCGTGGAGTGGAGATCTACC | 59.049 | 57.143 | 1.43 | 3.43 | 31.90 | 3.18 |
452 | 453 | 1.335496 | GCTCGTGGAGTGGAGATCTAC | 59.665 | 57.143 | 0.00 | 0.00 | 31.90 | 2.59 |
453 | 454 | 1.681538 | GCTCGTGGAGTGGAGATCTA | 58.318 | 55.000 | 0.00 | 0.00 | 31.90 | 1.98 |
454 | 455 | 1.040339 | GGCTCGTGGAGTGGAGATCT | 61.040 | 60.000 | 0.00 | 0.00 | 31.90 | 2.75 |
455 | 456 | 1.439644 | GGCTCGTGGAGTGGAGATC | 59.560 | 63.158 | 0.00 | 0.00 | 31.90 | 2.75 |
456 | 457 | 2.060980 | GGGCTCGTGGAGTGGAGAT | 61.061 | 63.158 | 0.00 | 0.00 | 31.90 | 2.75 |
457 | 458 | 1.859841 | TAGGGCTCGTGGAGTGGAGA | 61.860 | 60.000 | 0.00 | 0.00 | 31.90 | 3.71 |
458 | 459 | 1.379977 | TAGGGCTCGTGGAGTGGAG | 60.380 | 63.158 | 0.00 | 0.00 | 31.39 | 3.86 |
459 | 460 | 1.379977 | CTAGGGCTCGTGGAGTGGA | 60.380 | 63.158 | 0.00 | 0.00 | 31.39 | 4.02 |
460 | 461 | 0.757188 | ATCTAGGGCTCGTGGAGTGG | 60.757 | 60.000 | 0.00 | 0.00 | 31.39 | 4.00 |
461 | 462 | 0.671251 | GATCTAGGGCTCGTGGAGTG | 59.329 | 60.000 | 0.00 | 0.00 | 31.39 | 3.51 |
462 | 463 | 0.553819 | AGATCTAGGGCTCGTGGAGT | 59.446 | 55.000 | 0.00 | 0.00 | 31.39 | 3.85 |
463 | 464 | 1.243902 | GAGATCTAGGGCTCGTGGAG | 58.756 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
464 | 465 | 0.178987 | GGAGATCTAGGGCTCGTGGA | 60.179 | 60.000 | 0.00 | 0.00 | 31.95 | 4.02 |
465 | 466 | 0.178975 | AGGAGATCTAGGGCTCGTGG | 60.179 | 60.000 | 0.00 | 0.00 | 31.95 | 4.94 |
466 | 467 | 0.958091 | CAGGAGATCTAGGGCTCGTG | 59.042 | 60.000 | 15.77 | 15.77 | 39.62 | 4.35 |
467 | 468 | 0.847373 | TCAGGAGATCTAGGGCTCGT | 59.153 | 55.000 | 0.00 | 4.96 | 31.95 | 4.18 |
468 | 469 | 1.243902 | GTCAGGAGATCTAGGGCTCG | 58.756 | 60.000 | 0.00 | 0.00 | 31.95 | 5.03 |
469 | 470 | 1.202830 | TCGTCAGGAGATCTAGGGCTC | 60.203 | 57.143 | 0.00 | 4.71 | 0.00 | 4.70 |
470 | 471 | 0.847373 | TCGTCAGGAGATCTAGGGCT | 59.153 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
471 | 472 | 1.243902 | CTCGTCAGGAGATCTAGGGC | 58.756 | 60.000 | 0.00 | 0.00 | 46.23 | 5.19 |
472 | 473 | 1.202879 | AGCTCGTCAGGAGATCTAGGG | 60.203 | 57.143 | 0.00 | 0.00 | 46.23 | 3.53 |
473 | 474 | 2.270352 | AGCTCGTCAGGAGATCTAGG | 57.730 | 55.000 | 0.00 | 0.00 | 46.23 | 3.02 |
474 | 475 | 2.742053 | GCTAGCTCGTCAGGAGATCTAG | 59.258 | 54.545 | 7.70 | 2.02 | 46.23 | 2.43 |
475 | 476 | 2.370519 | AGCTAGCTCGTCAGGAGATCTA | 59.629 | 50.000 | 12.68 | 0.00 | 46.23 | 1.98 |
476 | 477 | 1.142870 | AGCTAGCTCGTCAGGAGATCT | 59.857 | 52.381 | 12.68 | 0.00 | 46.23 | 2.75 |
477 | 478 | 1.266718 | CAGCTAGCTCGTCAGGAGATC | 59.733 | 57.143 | 16.15 | 0.00 | 46.23 | 2.75 |
478 | 479 | 1.317613 | CAGCTAGCTCGTCAGGAGAT | 58.682 | 55.000 | 16.15 | 0.00 | 46.23 | 2.75 |
479 | 480 | 0.749818 | CCAGCTAGCTCGTCAGGAGA | 60.750 | 60.000 | 16.15 | 0.00 | 46.23 | 3.71 |
480 | 481 | 1.034838 | ACCAGCTAGCTCGTCAGGAG | 61.035 | 60.000 | 21.49 | 6.29 | 46.06 | 3.69 |
481 | 482 | 1.000771 | ACCAGCTAGCTCGTCAGGA | 60.001 | 57.895 | 21.49 | 0.00 | 0.00 | 3.86 |
482 | 483 | 1.435515 | GACCAGCTAGCTCGTCAGG | 59.564 | 63.158 | 30.34 | 22.88 | 34.93 | 3.86 |
483 | 484 | 1.063327 | CGACCAGCTAGCTCGTCAG | 59.937 | 63.158 | 32.68 | 23.74 | 34.57 | 3.51 |
484 | 485 | 0.958876 | TTCGACCAGCTAGCTCGTCA | 60.959 | 55.000 | 32.68 | 20.99 | 34.57 | 4.35 |
485 | 486 | 0.523757 | GTTCGACCAGCTAGCTCGTC | 60.524 | 60.000 | 26.97 | 26.97 | 32.17 | 4.20 |
486 | 487 | 1.241990 | TGTTCGACCAGCTAGCTCGT | 61.242 | 55.000 | 15.32 | 15.32 | 0.00 | 4.18 |
487 | 488 | 0.101399 | ATGTTCGACCAGCTAGCTCG | 59.899 | 55.000 | 16.15 | 16.28 | 0.00 | 5.03 |
488 | 489 | 1.537135 | GGATGTTCGACCAGCTAGCTC | 60.537 | 57.143 | 16.15 | 2.95 | 0.00 | 4.09 |
489 | 490 | 0.461961 | GGATGTTCGACCAGCTAGCT | 59.538 | 55.000 | 12.68 | 12.68 | 0.00 | 3.32 |
490 | 491 | 0.530870 | GGGATGTTCGACCAGCTAGC | 60.531 | 60.000 | 6.62 | 6.62 | 0.00 | 3.42 |
491 | 492 | 0.824109 | TGGGATGTTCGACCAGCTAG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
512 | 513 | 0.943359 | GCCGCGAAGATCATCTCTGG | 60.943 | 60.000 | 8.23 | 0.00 | 33.29 | 3.86 |
545 | 546 | 2.496070 | GTTTTACTTGGGATTGGGCTCC | 59.504 | 50.000 | 0.00 | 0.00 | 34.31 | 4.70 |
597 | 598 | 4.222588 | AGTCTGTCTTGATGAGGAGGAAAG | 59.777 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
701 | 702 | 1.843368 | TGTAGGGTTCGTAGAGTGGG | 58.157 | 55.000 | 0.00 | 0.00 | 38.43 | 4.61 |
734 | 735 | 1.981495 | GGATTGGTAGCCCTATCAGCT | 59.019 | 52.381 | 5.96 | 0.00 | 42.66 | 4.24 |
747 | 748 | 2.203153 | GCGTATGCCCGGATTGGT | 60.203 | 61.111 | 0.73 | 0.00 | 35.15 | 3.67 |
779 | 780 | 3.357079 | AGCACGAAGGCTTTGGCG | 61.357 | 61.111 | 18.48 | 11.87 | 42.71 | 5.69 |
810 | 978 | 2.190578 | CGGATGGGAAGGAGGCAC | 59.809 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
955 | 1130 | 5.343307 | AAGCAAACCAAAAGTCAGAACAT | 57.657 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
1263 | 1438 | 6.476380 | TGAAAGTTACGTCACTACATTTTCGT | 59.524 | 34.615 | 2.20 | 0.00 | 35.73 | 3.85 |
1277 | 1452 | 1.612463 | AGAGAGCGGTGAAAGTTACGT | 59.388 | 47.619 | 0.00 | 0.00 | 0.00 | 3.57 |
1345 | 1520 | 0.396974 | CTCCTGCAGGTAGAGGAGCT | 60.397 | 60.000 | 31.58 | 0.00 | 46.90 | 4.09 |
1410 | 1585 | 1.538047 | TCAATGAAAGTGGGCAGCTC | 58.462 | 50.000 | 0.00 | 0.00 | 29.44 | 4.09 |
1848 | 2030 | 7.847096 | TGACCATACAAGACATGTGTATTACT | 58.153 | 34.615 | 1.15 | 0.00 | 43.77 | 2.24 |
1881 | 2063 | 8.134895 | CACACAAATCTTAGGTGTAACATTGTT | 58.865 | 33.333 | 7.30 | 7.30 | 43.41 | 2.83 |
1891 | 2073 | 7.447374 | TGAATTACCACACAAATCTTAGGTG | 57.553 | 36.000 | 0.00 | 0.00 | 38.47 | 4.00 |
1892 | 2074 | 8.650143 | ATTGAATTACCACACAAATCTTAGGT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 3.08 |
2071 | 2277 | 7.246171 | AGGTGAAACTAGTAACATGAGTGAT | 57.754 | 36.000 | 0.00 | 0.00 | 36.74 | 3.06 |
2092 | 2298 | 5.815581 | TGCATATGAGGAACAACTTTAGGT | 58.184 | 37.500 | 6.97 | 0.00 | 0.00 | 3.08 |
2145 | 2353 | 7.992754 | ATGATCCTTTTGAGACCTAATATGC | 57.007 | 36.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2148 | 2356 | 8.884323 | AGCATATGATCCTTTTGAGACCTAATA | 58.116 | 33.333 | 6.97 | 0.00 | 0.00 | 0.98 |
2191 | 2399 | 4.998051 | ACCTTCAATAACATCACCCTTGT | 58.002 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2259 | 2467 | 8.832521 | TGGATTGGCAAGTAACTAATAAATACG | 58.167 | 33.333 | 5.96 | 0.00 | 0.00 | 3.06 |
2288 | 2496 | 7.382110 | CAATCTGACGTGGGAGATTAATCTAT | 58.618 | 38.462 | 17.94 | 1.47 | 36.90 | 1.98 |
2305 | 2513 | 2.484742 | ACCCGTTAACCCAATCTGAC | 57.515 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2312 | 2520 | 4.648307 | ACAATAAAACAACCCGTTAACCCA | 59.352 | 37.500 | 0.00 | 0.00 | 36.59 | 4.51 |
2323 | 2531 | 9.974980 | TTCCCTCTTTGATTACAATAAAACAAC | 57.025 | 29.630 | 0.00 | 0.00 | 35.85 | 3.32 |
2328 | 2536 | 7.446013 | ACGTGTTCCCTCTTTGATTACAATAAA | 59.554 | 33.333 | 0.00 | 0.00 | 35.85 | 1.40 |
2334 | 2542 | 6.592607 | TGATTACGTGTTCCCTCTTTGATTAC | 59.407 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
2421 | 2629 | 6.536787 | AGATACTTATCCATGCAGAAAGCGC | 61.537 | 44.000 | 0.00 | 0.00 | 38.68 | 5.92 |
2501 | 2711 | 3.799366 | TGTGCCCACCGTATAATGTAAG | 58.201 | 45.455 | 0.00 | 0.00 | 0.00 | 2.34 |
2513 | 2723 | 1.610624 | CGGGATACATATGTGCCCACC | 60.611 | 57.143 | 31.56 | 20.80 | 41.31 | 4.61 |
2515 | 2725 | 1.429930 | ACGGGATACATATGTGCCCA | 58.570 | 50.000 | 31.56 | 12.40 | 41.31 | 5.36 |
2522 | 2732 | 7.956328 | TTGATCTTAGCTACGGGATACATAT | 57.044 | 36.000 | 0.00 | 0.00 | 39.74 | 1.78 |
2574 | 2784 | 7.614192 | CCCCCTAGAAGTACAATTTAACACATT | 59.386 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
2770 | 2981 | 7.624549 | TGTCTTTTTCATAGCTCCATACTCTT | 58.375 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
2799 | 3010 | 6.286240 | AGTAATGTCACTACTCATTGCTGA | 57.714 | 37.500 | 7.45 | 0.00 | 42.24 | 4.26 |
2809 | 3020 | 4.755123 | AGTGCCAAACAGTAATGTCACTAC | 59.245 | 41.667 | 12.12 | 2.67 | 32.49 | 2.73 |
2812 | 3023 | 5.880054 | ATAGTGCCAAACAGTAATGTCAC | 57.120 | 39.130 | 0.00 | 0.30 | 37.72 | 3.67 |
2814 | 3025 | 6.494893 | TCAATAGTGCCAAACAGTAATGTC | 57.505 | 37.500 | 0.00 | 0.00 | 37.72 | 3.06 |
2815 | 3026 | 6.892658 | TTCAATAGTGCCAAACAGTAATGT | 57.107 | 33.333 | 0.00 | 0.00 | 37.72 | 2.71 |
2816 | 3027 | 6.254157 | GCATTCAATAGTGCCAAACAGTAATG | 59.746 | 38.462 | 0.00 | 0.00 | 37.72 | 1.90 |
2817 | 3028 | 6.153340 | AGCATTCAATAGTGCCAAACAGTAAT | 59.847 | 34.615 | 0.00 | 0.00 | 42.20 | 1.89 |
2818 | 3029 | 5.476599 | AGCATTCAATAGTGCCAAACAGTAA | 59.523 | 36.000 | 0.00 | 0.00 | 42.20 | 2.24 |
2819 | 3030 | 5.009631 | AGCATTCAATAGTGCCAAACAGTA | 58.990 | 37.500 | 0.00 | 0.00 | 42.20 | 2.74 |
2820 | 3031 | 3.828451 | AGCATTCAATAGTGCCAAACAGT | 59.172 | 39.130 | 0.00 | 0.00 | 42.20 | 3.55 |
2821 | 3032 | 4.082625 | TCAGCATTCAATAGTGCCAAACAG | 60.083 | 41.667 | 0.00 | 0.00 | 42.20 | 3.16 |
2822 | 3033 | 3.825585 | TCAGCATTCAATAGTGCCAAACA | 59.174 | 39.130 | 0.00 | 0.00 | 42.20 | 2.83 |
2823 | 3034 | 4.439305 | TCAGCATTCAATAGTGCCAAAC | 57.561 | 40.909 | 0.00 | 0.00 | 42.20 | 2.93 |
2824 | 3035 | 5.664294 | AATCAGCATTCAATAGTGCCAAA | 57.336 | 34.783 | 0.00 | 0.00 | 42.20 | 3.28 |
2825 | 3036 | 5.047164 | ACAAATCAGCATTCAATAGTGCCAA | 60.047 | 36.000 | 0.00 | 0.00 | 42.20 | 4.52 |
2826 | 3037 | 4.463539 | ACAAATCAGCATTCAATAGTGCCA | 59.536 | 37.500 | 0.00 | 0.00 | 42.20 | 4.92 |
2827 | 3038 | 5.002464 | ACAAATCAGCATTCAATAGTGCC | 57.998 | 39.130 | 0.00 | 0.00 | 42.20 | 5.01 |
2828 | 3039 | 5.888105 | AGACAAATCAGCATTCAATAGTGC | 58.112 | 37.500 | 0.00 | 0.00 | 41.57 | 4.40 |
2868 | 3080 | 1.810151 | CAGGGTCAAACACATTACGGG | 59.190 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
2871 | 3083 | 7.518211 | GCAAAATTTCAGGGTCAAACACATTAC | 60.518 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
2947 | 3159 | 6.021311 | GCGTAAACGATGTTTTGAACTTTCAA | 60.021 | 34.615 | 6.71 | 0.07 | 42.63 | 2.69 |
2948 | 3160 | 5.452944 | GCGTAAACGATGTTTTGAACTTTCA | 59.547 | 36.000 | 6.71 | 0.00 | 43.02 | 2.69 |
2953 | 3165 | 3.115098 | CACGCGTAAACGATGTTTTGAAC | 59.885 | 43.478 | 13.44 | 0.00 | 43.02 | 3.18 |
2964 | 3176 | 1.378347 | GTGAAAACCACGCGTAAACG | 58.622 | 50.000 | 13.44 | 0.00 | 38.02 | 3.60 |
2970 | 3182 | 3.231324 | GACCGGTGAAAACCACGCG | 62.231 | 63.158 | 14.63 | 3.53 | 46.62 | 6.01 |
2973 | 3185 | 0.179040 | TGGAGACCGGTGAAAACCAC | 60.179 | 55.000 | 14.63 | 0.00 | 44.95 | 4.16 |
3002 | 3214 | 5.221641 | CCTGGGAGAATATCATACGGAAACA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3024 | 3236 | 4.104102 | TGTTGACTTGTTCTCCCATAACCT | 59.896 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
3033 | 3245 | 3.058914 | CCACCGAATGTTGACTTGTTCTC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
3058 | 3270 | 2.600470 | TTCGTGTAGTTTTCACCGGT | 57.400 | 45.000 | 0.00 | 0.00 | 32.86 | 5.28 |
3059 | 3271 | 3.948196 | TTTTCGTGTAGTTTTCACCGG | 57.052 | 42.857 | 0.00 | 0.00 | 32.86 | 5.28 |
3060 | 3272 | 6.595794 | ACATATTTTCGTGTAGTTTTCACCG | 58.404 | 36.000 | 0.00 | 0.00 | 32.86 | 4.94 |
3109 | 3324 | 6.314917 | ACATCACCCTCTTAACATCCTTTTT | 58.685 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3143 | 3358 | 7.236674 | TGTGTTTGAATCTGAAATTTTGCAG | 57.763 | 32.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3151 | 3366 | 6.869315 | TCCGTAATGTGTTTGAATCTGAAA | 57.131 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3157 | 3372 | 4.992319 | TCTCGTTCCGTAATGTGTTTGAAT | 59.008 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3202 | 3417 | 3.825585 | TGTTTGGCACTATTCAATGCTGA | 59.174 | 39.130 | 0.00 | 0.00 | 41.74 | 4.26 |
3392 | 3608 | 6.392625 | TCATACGGAAACCAACATTCAAAA | 57.607 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
3404 | 3620 | 5.855045 | ACTGGGAGAATATCATACGGAAAC | 58.145 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
3417 | 3633 | 6.688073 | ATATCATACGGAAACTGGGAGAAT | 57.312 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
3418 | 3634 | 6.326583 | AGAATATCATACGGAAACTGGGAGAA | 59.673 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
3419 | 3635 | 5.839063 | AGAATATCATACGGAAACTGGGAGA | 59.161 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3489 | 3705 | 8.559536 | CGTAATGGCTACAACAGATATTTCATT | 58.440 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3521 | 3742 | 9.328721 | CAGATTTTTCTTGTTTTGTGGTTTTTC | 57.671 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
3574 | 3796 | 2.639065 | ACTCACTCGATCACTCCTCTC | 58.361 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
3575 | 3797 | 2.799126 | ACTCACTCGATCACTCCTCT | 57.201 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3576 | 3798 | 3.064271 | GTGTACTCACTCGATCACTCCTC | 59.936 | 52.174 | 0.00 | 0.00 | 40.98 | 3.71 |
3577 | 3799 | 3.011119 | GTGTACTCACTCGATCACTCCT | 58.989 | 50.000 | 0.00 | 0.00 | 40.98 | 3.69 |
3578 | 3800 | 2.223066 | CGTGTACTCACTCGATCACTCC | 60.223 | 54.545 | 0.00 | 0.00 | 42.71 | 3.85 |
3580 | 3802 | 2.159824 | CACGTGTACTCACTCGATCACT | 59.840 | 50.000 | 7.58 | 0.00 | 42.71 | 3.41 |
3582 | 3804 | 1.467342 | CCACGTGTACTCACTCGATCA | 59.533 | 52.381 | 15.65 | 0.00 | 42.71 | 2.92 |
3583 | 3805 | 1.467734 | ACCACGTGTACTCACTCGATC | 59.532 | 52.381 | 15.65 | 0.00 | 42.71 | 3.69 |
3584 | 3806 | 1.467734 | GACCACGTGTACTCACTCGAT | 59.532 | 52.381 | 15.65 | 0.00 | 42.71 | 3.59 |
3585 | 3807 | 0.870393 | GACCACGTGTACTCACTCGA | 59.130 | 55.000 | 15.65 | 0.00 | 42.71 | 4.04 |
3586 | 3808 | 0.452287 | CGACCACGTGTACTCACTCG | 60.452 | 60.000 | 15.65 | 5.02 | 44.92 | 4.18 |
3587 | 3809 | 3.379682 | CGACCACGTGTACTCACTC | 57.620 | 57.895 | 15.65 | 0.00 | 41.89 | 3.51 |
3599 | 3821 | 3.339253 | AAAATACACCCCTACGACCAC | 57.661 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
3628 | 3850 | 6.596888 | CCAAGAGTCTGTCACATGAAATATGT | 59.403 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
3629 | 3851 | 6.457934 | GCCAAGAGTCTGTCACATGAAATATG | 60.458 | 42.308 | 0.00 | 0.00 | 0.00 | 1.78 |
3680 | 3903 | 8.879227 | TGATCCCAACATATGTCTATCAACATA | 58.121 | 33.333 | 9.23 | 0.00 | 44.07 | 2.29 |
3914 | 4137 | 7.337689 | CCTTTTACAATGTCTTCTCCATGATCA | 59.662 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
3926 | 4149 | 6.599638 | GGAGATGCTTACCTTTTACAATGTCT | 59.400 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
4184 | 5048 | 9.220767 | AGTGAATTTACTTTACCAAGAGCTAAG | 57.779 | 33.333 | 0.00 | 0.00 | 33.72 | 2.18 |
4187 | 5051 | 9.740710 | ATAAGTGAATTTACTTTACCAAGAGCT | 57.259 | 29.630 | 19.38 | 0.00 | 41.01 | 4.09 |
4228 | 5971 | 5.668471 | TGTTCAAAATTGATTTGTGCTGGA | 58.332 | 33.333 | 0.00 | 0.00 | 46.89 | 3.86 |
4290 | 6034 | 4.487714 | TGCTCCCAGTCTTTACTATTGG | 57.512 | 45.455 | 0.00 | 0.00 | 33.48 | 3.16 |
4314 | 6058 | 4.159506 | TGCCATAGTAAAATGCCTTGGTTC | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
4381 | 6125 | 7.201410 | GCATCACTATTCTTCATGCAACTTTTG | 60.201 | 37.037 | 0.00 | 0.00 | 39.76 | 2.44 |
4383 | 6127 | 6.152323 | AGCATCACTATTCTTCATGCAACTTT | 59.848 | 34.615 | 5.10 | 0.00 | 41.98 | 2.66 |
4384 | 6128 | 5.651139 | AGCATCACTATTCTTCATGCAACTT | 59.349 | 36.000 | 5.10 | 0.00 | 41.98 | 2.66 |
4387 | 6131 | 5.187687 | TGAGCATCACTATTCTTCATGCAA | 58.812 | 37.500 | 5.10 | 0.00 | 42.56 | 4.08 |
4411 | 6155 | 1.195448 | CTGATCTGCACCAACAACGTC | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
4433 | 6177 | 1.191489 | TCAGGCACCTTGATCGTGGA | 61.191 | 55.000 | 10.30 | 0.00 | 0.00 | 4.02 |
4437 | 6181 | 1.811266 | CCGTCAGGCACCTTGATCG | 60.811 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
4457 | 6204 | 3.054434 | CCATCACTAATGTCCACCTTCCA | 60.054 | 47.826 | 0.00 | 0.00 | 33.13 | 3.53 |
4483 | 6230 | 2.071778 | AGAGTTTGCAACCATGGTGT | 57.928 | 45.000 | 20.60 | 5.92 | 0.00 | 4.16 |
4492 | 6239 | 7.606073 | TGTGTATCTTAATGCTAGAGTTTGCAA | 59.394 | 33.333 | 0.00 | 0.00 | 42.74 | 4.08 |
4573 | 6320 | 9.413734 | CCATTTTATTCAGTCCTTTTAGATCCT | 57.586 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
4574 | 6321 | 9.408648 | TCCATTTTATTCAGTCCTTTTAGATCC | 57.591 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
4593 | 6340 | 0.819582 | CGCTCAGGGCAATCCATTTT | 59.180 | 50.000 | 0.00 | 0.00 | 41.91 | 1.82 |
4603 | 6350 | 2.894387 | GCTCACATCGCTCAGGGC | 60.894 | 66.667 | 0.00 | 0.00 | 37.64 | 5.19 |
4607 | 6354 | 0.733909 | CGACTTGCTCACATCGCTCA | 60.734 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4608 | 6355 | 0.456824 | TCGACTTGCTCACATCGCTC | 60.457 | 55.000 | 0.00 | 0.00 | 34.59 | 5.03 |
4609 | 6356 | 0.734253 | GTCGACTTGCTCACATCGCT | 60.734 | 55.000 | 8.70 | 0.00 | 34.59 | 4.93 |
4610 | 6357 | 1.704582 | GTCGACTTGCTCACATCGC | 59.295 | 57.895 | 8.70 | 0.00 | 34.59 | 4.58 |
4611 | 6358 | 0.729478 | ACGTCGACTTGCTCACATCG | 60.729 | 55.000 | 14.70 | 0.00 | 35.91 | 3.84 |
4612 | 6359 | 0.985549 | GACGTCGACTTGCTCACATC | 59.014 | 55.000 | 14.70 | 0.00 | 0.00 | 3.06 |
4613 | 6360 | 0.729478 | CGACGTCGACTTGCTCACAT | 60.729 | 55.000 | 33.35 | 0.00 | 43.02 | 3.21 |
4614 | 6361 | 1.370051 | CGACGTCGACTTGCTCACA | 60.370 | 57.895 | 33.35 | 0.00 | 43.02 | 3.58 |
4615 | 6362 | 1.082300 | TCGACGTCGACTTGCTCAC | 60.082 | 57.895 | 34.97 | 0.00 | 44.22 | 3.51 |
4616 | 6363 | 3.336566 | TCGACGTCGACTTGCTCA | 58.663 | 55.556 | 34.97 | 12.17 | 44.22 | 4.26 |
4643 | 6392 | 7.030165 | GTCAGTCTACCAATATATCATGGACG | 58.970 | 42.308 | 9.95 | 1.85 | 39.12 | 4.79 |
4649 | 6398 | 7.436933 | CAAGCTGTCAGTCTACCAATATATCA | 58.563 | 38.462 | 0.93 | 0.00 | 0.00 | 2.15 |
4652 | 6401 | 5.453339 | GGCAAGCTGTCAGTCTACCAATATA | 60.453 | 44.000 | 0.93 | 0.00 | 0.00 | 0.86 |
4656 | 6405 | 1.270839 | GGCAAGCTGTCAGTCTACCAA | 60.271 | 52.381 | 0.93 | 0.00 | 0.00 | 3.67 |
4665 | 6414 | 0.819259 | GTGGTCTTGGCAAGCTGTCA | 60.819 | 55.000 | 22.31 | 13.50 | 0.00 | 3.58 |
4667 | 6416 | 1.529244 | GGTGGTCTTGGCAAGCTGT | 60.529 | 57.895 | 22.31 | 0.00 | 0.00 | 4.40 |
4804 | 6556 | 4.523943 | TGAGGCAACAAAATCAGCATTACT | 59.476 | 37.500 | 0.00 | 0.00 | 41.41 | 2.24 |
4904 | 6656 | 7.956315 | ACCCAGGAAGCAAGACTCTTATATATA | 59.044 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
4905 | 6657 | 6.789959 | ACCCAGGAAGCAAGACTCTTATATAT | 59.210 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
4906 | 6658 | 6.042093 | CACCCAGGAAGCAAGACTCTTATATA | 59.958 | 42.308 | 0.00 | 0.00 | 0.00 | 0.86 |
4907 | 6659 | 4.971924 | ACCCAGGAAGCAAGACTCTTATAT | 59.028 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
4923 | 6675 | 3.321648 | ACGCTGATGCACCCAGGA | 61.322 | 61.111 | 16.75 | 0.00 | 39.64 | 3.86 |
4986 | 6743 | 3.241701 | ACAACACGAACAAACTTTGCTG | 58.758 | 40.909 | 1.14 | 0.00 | 0.00 | 4.41 |
4988 | 6745 | 3.670991 | TCAACAACACGAACAAACTTTGC | 59.329 | 39.130 | 1.14 | 0.00 | 0.00 | 3.68 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.