Multiple sequence alignment - TraesCS5A01G007800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G007800 chr5A 100.000 6800 0 0 1 6800 4853543 4846744 0.000000e+00 12558.0
1 TraesCS5A01G007800 chr5A 86.335 322 27 7 5426 5739 4975651 4975963 1.090000e-87 335.0
2 TraesCS5A01G007800 chr5A 84.146 328 41 10 4697 5016 6612885 6612561 2.380000e-79 307.0
3 TraesCS5A01G007800 chr5B 94.158 3937 175 25 1490 5392 7545346 7541431 0.000000e+00 5945.0
4 TraesCS5A01G007800 chr5B 83.616 1239 61 64 278 1441 7546515 7545344 0.000000e+00 1033.0
5 TraesCS5A01G007800 chr5B 86.562 640 27 18 5442 6047 7541076 7540462 0.000000e+00 651.0
6 TraesCS5A01G007800 chr5B 87.522 577 35 13 6077 6631 7539106 7538545 3.460000e-177 632.0
7 TraesCS5A01G007800 chr5B 82.740 365 48 10 2232 2592 7934295 7934648 1.840000e-80 311.0
8 TraesCS5A01G007800 chr5B 79.346 489 53 18 5287 5739 7935085 7935561 3.990000e-77 300.0
9 TraesCS5A01G007800 chr5B 80.214 374 49 13 2402 2754 7969492 7969861 2.430000e-64 257.0
10 TraesCS5A01G007800 chr5B 91.160 181 10 3 1 176 7546743 7546564 2.450000e-59 241.0
11 TraesCS5A01G007800 chr5B 87.681 138 14 2 2899 3036 7969869 7970003 2.540000e-34 158.0
12 TraesCS5A01G007800 chr5D 96.709 3039 84 9 2687 5715 7413388 7410356 0.000000e+00 5044.0
13 TraesCS5A01G007800 chr5D 92.238 2757 99 51 5 2703 7416105 7413406 0.000000e+00 3799.0
14 TraesCS5A01G007800 chr5D 91.333 300 18 3 6375 6673 7409321 7409029 2.950000e-108 403.0
15 TraesCS5A01G007800 chr5D 76.287 544 87 27 1504 2031 37021833 37022350 1.130000e-62 252.0
16 TraesCS5A01G007800 chr5D 83.264 239 35 4 4855 5092 7718390 7718156 1.490000e-51 215.0
17 TraesCS5A01G007800 chr5D 80.952 168 19 6 4130 4297 7571282 7571128 3.330000e-23 121.0
18 TraesCS5A01G007800 chr5D 83.969 131 13 6 3872 4002 7571455 7571333 1.200000e-22 119.0
19 TraesCS5A01G007800 chr5D 93.243 74 2 2 5566 5639 7724753 7724823 9.330000e-19 106.0
20 TraesCS5A01G007800 chr5D 93.243 74 2 2 5566 5639 7727538 7727608 9.330000e-19 106.0
21 TraesCS5A01G007800 chr5D 93.243 74 2 2 5566 5639 7730517 7730587 9.330000e-19 106.0
22 TraesCS5A01G007800 chr5D 90.541 74 4 2 5566 5639 7735150 7735220 2.020000e-15 95.3
23 TraesCS5A01G007800 chr5D 85.106 94 11 3 5257 5349 7724597 7724688 7.260000e-15 93.5
24 TraesCS5A01G007800 chr5D 85.106 94 11 3 5257 5349 7727382 7727473 7.260000e-15 93.5
25 TraesCS5A01G007800 chr5D 85.106 94 11 3 5257 5349 7730361 7730452 7.260000e-15 93.5
26 TraesCS5A01G007800 chr5D 84.043 94 12 3 5257 5349 7734994 7735085 3.380000e-13 87.9
27 TraesCS5A01G007800 chr5D 94.231 52 2 1 3231 3282 7571849 7571799 2.030000e-10 78.7
28 TraesCS5A01G007800 chr5D 95.000 40 2 0 4789 4828 7718430 7718391 5.690000e-06 63.9
29 TraesCS5A01G007800 chr5D 96.970 33 1 0 2205 2237 7718711 7718743 1.000000e-03 56.5
30 TraesCS5A01G007800 chr1B 83.710 221 32 1 2108 2328 44908186 44907970 8.940000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G007800 chr5A 4846744 4853543 6799 True 12558.0 12558 100.000000 1 6800 1 chr5A.!!$R1 6799
1 TraesCS5A01G007800 chr5B 7538545 7546743 8198 True 1700.4 5945 88.603600 1 6631 5 chr5B.!!$R1 6630
2 TraesCS5A01G007800 chr5B 7934295 7935561 1266 False 305.5 311 81.043000 2232 5739 2 chr5B.!!$F1 3507
3 TraesCS5A01G007800 chr5B 7969492 7970003 511 False 207.5 257 83.947500 2402 3036 2 chr5B.!!$F2 634
4 TraesCS5A01G007800 chr5D 7409029 7416105 7076 True 3082.0 5044 93.426667 5 6673 3 chr5D.!!$R1 6668
5 TraesCS5A01G007800 chr5D 37021833 37022350 517 False 252.0 252 76.287000 1504 2031 1 chr5D.!!$F2 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 971 0.106217 CTCTCACCCCTCTCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71 F
1293 1423 1.086634 GTGCCAGTCGATTCTGAGGC 61.087 60.000 4.68 2.60 37.61 4.70 F
1931 2088 1.351076 TGATCAGGAAGCCACAGTCA 58.649 50.000 0.00 0.00 0.00 3.41 F
2847 3266 0.113776 TGTACTCAAGAGACCCGGGT 59.886 55.000 30.81 30.81 0.00 5.28 F
4023 4443 1.009829 GATCTGCCAAGCCTTACACG 58.990 55.000 0.00 0.00 0.00 4.49 F
4287 4707 1.195674 GTTCTTCGTGCTTGGCTCTTC 59.804 52.381 0.00 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2227 0.026285 CGCGGCCATACGAGAAAAAG 59.974 55.000 2.24 0.00 35.64 2.27 R
2502 2685 1.302271 CAGCTTGCTCTGCAGTGGA 60.302 57.895 14.67 10.11 40.61 4.02 R
3141 3560 1.311859 CACCATTGTGGGGATCATCG 58.688 55.000 0.52 0.00 46.22 3.84 R
4275 4695 0.106708 AGTGTTCGAAGAGCCAAGCA 59.893 50.000 0.00 0.00 36.75 3.91 R
5156 5599 0.319405 CGTTTCCGTACCTCCCAAGT 59.681 55.000 0.00 0.00 0.00 3.16 R
6187 8582 0.038892 GGCTACGACAAAGACGACCA 60.039 55.000 0.00 0.00 34.70 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 0.540365 CTTGGCTGGTGGACCACATT 60.540 55.000 25.75 0.00 42.01 2.71
35 37 0.539438 TTGGCTGGTGGACCACATTC 60.539 55.000 25.75 12.86 42.01 2.67
126 132 0.251916 TCACACGTGATGAATCCCCC 59.748 55.000 25.01 0.00 34.14 5.40
131 137 1.846439 ACGTGATGAATCCCCCTCAAT 59.154 47.619 0.00 0.00 0.00 2.57
155 161 4.730949 CAAATGATTTGGTGATCCTGCT 57.269 40.909 9.98 0.00 37.01 4.24
170 215 4.980339 TCCTGCTTGCATATCTCCATTA 57.020 40.909 0.00 0.00 0.00 1.90
171 216 4.903054 TCCTGCTTGCATATCTCCATTAG 58.097 43.478 0.00 0.00 0.00 1.73
172 217 3.439476 CCTGCTTGCATATCTCCATTAGC 59.561 47.826 0.00 0.00 0.00 3.09
173 218 4.325119 CTGCTTGCATATCTCCATTAGCT 58.675 43.478 0.00 0.00 0.00 3.32
174 219 4.070009 TGCTTGCATATCTCCATTAGCTG 58.930 43.478 0.00 0.00 0.00 4.24
176 221 3.063510 TGCATATCTCCATTAGCTGGC 57.936 47.619 0.00 0.00 45.52 4.85
177 222 2.372837 TGCATATCTCCATTAGCTGGCA 59.627 45.455 0.00 0.00 45.52 4.92
178 223 2.746362 GCATATCTCCATTAGCTGGCAC 59.254 50.000 0.00 0.00 45.52 5.01
179 224 3.341823 CATATCTCCATTAGCTGGCACC 58.658 50.000 0.00 0.00 45.52 5.01
180 225 1.216064 ATCTCCATTAGCTGGCACCA 58.784 50.000 0.00 0.00 45.52 4.17
181 226 0.991146 TCTCCATTAGCTGGCACCAA 59.009 50.000 0.00 0.00 45.52 3.67
182 227 1.354031 TCTCCATTAGCTGGCACCAAA 59.646 47.619 0.00 0.00 45.52 3.28
183 228 2.170166 CTCCATTAGCTGGCACCAAAA 58.830 47.619 0.00 0.00 45.52 2.44
184 229 1.892474 TCCATTAGCTGGCACCAAAAC 59.108 47.619 0.00 0.00 45.52 2.43
185 230 1.066929 CCATTAGCTGGCACCAAAACC 60.067 52.381 0.00 0.00 38.47 3.27
186 231 1.617850 CATTAGCTGGCACCAAAACCA 59.382 47.619 0.00 0.00 0.00 3.67
187 232 1.781786 TTAGCTGGCACCAAAACCAA 58.218 45.000 0.00 0.00 34.96 3.67
188 233 1.781786 TAGCTGGCACCAAAACCAAA 58.218 45.000 0.00 0.00 34.96 3.28
189 234 0.908198 AGCTGGCACCAAAACCAAAA 59.092 45.000 0.00 0.00 34.96 2.44
190 235 1.134431 AGCTGGCACCAAAACCAAAAG 60.134 47.619 0.00 0.00 34.96 2.27
191 236 1.298602 CTGGCACCAAAACCAAAAGC 58.701 50.000 0.00 0.00 34.96 3.51
192 237 0.107459 TGGCACCAAAACCAAAAGCC 60.107 50.000 0.00 0.00 40.93 4.35
193 238 0.107459 GGCACCAAAACCAAAAGCCA 60.107 50.000 0.00 0.00 40.29 4.75
194 239 1.680249 GGCACCAAAACCAAAAGCCAA 60.680 47.619 0.00 0.00 40.29 4.52
195 240 1.670295 GCACCAAAACCAAAAGCCAAG 59.330 47.619 0.00 0.00 0.00 3.61
196 241 1.670295 CACCAAAACCAAAAGCCAAGC 59.330 47.619 0.00 0.00 0.00 4.01
197 242 1.559219 ACCAAAACCAAAAGCCAAGCT 59.441 42.857 0.00 0.00 42.56 3.74
198 243 1.941975 CCAAAACCAAAAGCCAAGCTG 59.058 47.619 0.00 0.00 39.62 4.24
199 244 1.331447 CAAAACCAAAAGCCAAGCTGC 59.669 47.619 0.00 0.00 39.62 5.25
200 245 0.540923 AAACCAAAAGCCAAGCTGCA 59.459 45.000 1.02 0.00 39.62 4.41
201 246 0.179076 AACCAAAAGCCAAGCTGCAC 60.179 50.000 1.02 0.00 39.62 4.57
202 247 1.044790 ACCAAAAGCCAAGCTGCACT 61.045 50.000 1.02 0.00 39.62 4.40
203 248 0.961019 CCAAAAGCCAAGCTGCACTA 59.039 50.000 1.02 0.00 39.62 2.74
204 249 1.336240 CCAAAAGCCAAGCTGCACTAC 60.336 52.381 1.02 0.00 39.62 2.73
205 250 0.961753 AAAAGCCAAGCTGCACTACC 59.038 50.000 1.02 0.00 39.62 3.18
208 253 3.127533 CCAAGCTGCACTACCGCC 61.128 66.667 1.02 0.00 0.00 6.13
234 279 4.313819 TGCTTCAGCTGCAGGATG 57.686 55.556 17.12 8.51 42.66 3.51
240 285 1.538047 TCAGCTGCAGGATGAAAACC 58.462 50.000 17.12 0.00 39.69 3.27
330 376 5.860941 TTTATGTGTGTGGAAATTGTGGT 57.139 34.783 0.00 0.00 0.00 4.16
333 379 8.637196 TTTATGTGTGTGGAAATTGTGGTATA 57.363 30.769 0.00 0.00 0.00 1.47
368 419 1.423921 GTGAAGGGAGAAACAAGGGGA 59.576 52.381 0.00 0.00 0.00 4.81
538 620 9.273016 CCAGTCCACACCAACTAATAATAATAG 57.727 37.037 0.00 0.00 0.00 1.73
689 776 3.396276 CACAGTAGATAGGGAGAGGGAGA 59.604 52.174 0.00 0.00 0.00 3.71
690 777 3.655777 ACAGTAGATAGGGAGAGGGAGAG 59.344 52.174 0.00 0.00 0.00 3.20
691 778 3.913799 CAGTAGATAGGGAGAGGGAGAGA 59.086 52.174 0.00 0.00 0.00 3.10
693 780 3.377154 AGATAGGGAGAGGGAGAGAGA 57.623 52.381 0.00 0.00 0.00 3.10
695 782 1.827792 TAGGGAGAGGGAGAGAGAGG 58.172 60.000 0.00 0.00 0.00 3.69
696 783 0.998945 AGGGAGAGGGAGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
697 784 1.541672 GGAGAGGGAGAGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79
698 785 1.152546 GAGAGGGAGAGAGAGGGGC 60.153 68.421 0.00 0.00 0.00 5.80
700 787 2.623431 AGGGAGAGAGAGGGGCCT 60.623 66.667 0.84 0.00 0.00 5.19
701 788 2.445654 GGGAGAGAGAGGGGCCTG 60.446 72.222 0.84 0.00 0.00 4.85
744 837 3.776969 AGCAAGAGAGAGAGAGAGAGAGA 59.223 47.826 0.00 0.00 0.00 3.10
870 964 2.641746 CCCCTCCTCTCACCCCTCT 61.642 68.421 0.00 0.00 0.00 3.69
875 969 0.553862 TCCTCTCACCCCTCTCCTCT 60.554 60.000 0.00 0.00 0.00 3.69
877 971 0.106217 CTCTCACCCCTCTCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
908 1008 7.026247 TCCCTCTATCTTACTCTCTCCATAGA 58.974 42.308 0.00 0.00 0.00 1.98
959 1059 6.243900 TGGATGCAATCTTCTTCTTCTTCTT 58.756 36.000 0.00 0.00 44.71 2.52
960 1060 6.150641 TGGATGCAATCTTCTTCTTCTTCTTG 59.849 38.462 0.00 0.00 44.71 3.02
1033 1151 6.152638 TCCCTTCCATTTTCTTATGACCTT 57.847 37.500 0.00 0.00 0.00 3.50
1050 1173 2.866085 CTTCCCTCCCTTGCTCTGCG 62.866 65.000 0.00 0.00 0.00 5.18
1081 1204 3.123620 GCGGCTGCACCTTCTCTG 61.124 66.667 14.08 0.00 42.15 3.35
1129 1255 2.178912 TACCTTCGTCTTTGCCCTTG 57.821 50.000 0.00 0.00 0.00 3.61
1137 1263 1.268079 GTCTTTGCCCTTGTCTGCTTC 59.732 52.381 0.00 0.00 0.00 3.86
1174 1300 3.229552 GTTTCGCTGAATTGTGCTCTTC 58.770 45.455 0.00 0.00 0.00 2.87
1181 1307 3.817084 CTGAATTGTGCTCTTCTTGTCCA 59.183 43.478 0.00 0.00 0.00 4.02
1190 1316 1.623311 TCTTCTTGTCCATGCTTCCGA 59.377 47.619 0.00 0.00 0.00 4.55
1293 1423 1.086634 GTGCCAGTCGATTCTGAGGC 61.087 60.000 4.68 2.60 37.61 4.70
1391 1523 2.725221 ATAGCTCCTGCCTTTCTTGG 57.275 50.000 0.00 0.00 40.80 3.61
1398 1530 1.453155 CTGCCTTTCTTGGTGCGTAT 58.547 50.000 0.00 0.00 0.00 3.06
1413 1557 5.350365 TGGTGCGTATTATGTTCTTTCAGTC 59.650 40.000 0.00 0.00 0.00 3.51
1418 1562 8.564574 TGCGTATTATGTTCTTTCAGTCTTTTT 58.435 29.630 0.00 0.00 0.00 1.94
1579 1723 3.244044 TGCTGGCCAAATTGTAAAAGTCC 60.244 43.478 7.01 0.00 0.00 3.85
1584 1728 5.819901 TGGCCAAATTGTAAAAGTCCTTTTG 59.180 36.000 0.61 0.00 42.18 2.44
1630 1775 4.321718 TCATCAAGTCCAGCTCTTCAAAG 58.678 43.478 0.00 0.00 0.00 2.77
1648 1793 3.857157 AAGGCTCTGTTTCCTGTTACA 57.143 42.857 0.00 0.00 32.00 2.41
1649 1794 3.857157 AGGCTCTGTTTCCTGTTACAA 57.143 42.857 0.00 0.00 0.00 2.41
1660 1805 6.536941 TGTTTCCTGTTACAATTGCCTTTTTC 59.463 34.615 5.05 0.00 0.00 2.29
1693 1839 5.134202 TGTGTTGAGTCACCACACTATAG 57.866 43.478 18.52 0.00 37.51 1.31
1769 1926 7.186268 AGGGGTGGTTATTTTAGCTTTATCAA 58.814 34.615 0.00 0.00 0.00 2.57
1850 2007 3.063452 GCCTCTTTCGCATCGTAAAATCA 59.937 43.478 0.00 0.00 0.00 2.57
1854 2011 6.035650 CCTCTTTCGCATCGTAAAATCAAGTA 59.964 38.462 0.00 0.00 0.00 2.24
1875 2032 2.961522 TCAAACAGAATTTCGGCGAC 57.038 45.000 10.16 0.00 0.00 5.19
1927 2084 2.942752 GCAGATTGATCAGGAAGCCACA 60.943 50.000 0.00 0.00 0.00 4.17
1931 2088 1.351076 TGATCAGGAAGCCACAGTCA 58.649 50.000 0.00 0.00 0.00 3.41
2340 2518 1.792057 GCAAATTCGCACGTCACGG 60.792 57.895 0.35 0.00 0.00 4.94
2502 2685 3.142174 GACCTCTGTTTTGCTACTGCTT 58.858 45.455 0.00 0.00 40.48 3.91
2598 2944 5.168526 CTGCTTTACAAACACTTGCAGTA 57.831 39.130 0.00 0.00 40.75 2.74
2685 3063 4.898829 TCAGCCCATTTCATTTATGTCG 57.101 40.909 0.00 0.00 0.00 4.35
2847 3266 0.113776 TGTACTCAAGAGACCCGGGT 59.886 55.000 30.81 30.81 0.00 5.28
2895 3314 2.169352 TCTGGGCAACTTGCTCTATCTC 59.831 50.000 14.77 0.00 46.08 2.75
3060 3479 2.625823 CCATGGGCAACGCTCGTTT 61.626 57.895 2.85 0.00 36.00 3.60
3111 3530 4.083565 TGTTGATGCATATGATGGATGGG 58.916 43.478 6.97 0.00 41.66 4.00
3141 3560 1.160137 GTGGTGCTGAACTCATCCAC 58.840 55.000 10.73 10.73 36.09 4.02
3222 3641 2.437895 GTTCCGGTAGGGCAAGGC 60.438 66.667 0.00 0.00 38.33 4.35
3465 3884 6.871844 TGTGAATGTTTGGAAGAACATCAAA 58.128 32.000 3.97 0.00 46.53 2.69
3495 3914 2.105477 TCAGAAAGAGCAAGCTGAACCT 59.895 45.455 0.00 0.00 34.71 3.50
3724 4143 5.779529 AACAACTCAATGCAGATTTCTGT 57.220 34.783 9.21 0.00 45.45 3.41
3736 4155 5.237127 TGCAGATTTCTGTTTACTGACACTG 59.763 40.000 9.21 0.00 45.45 3.66
3795 4214 3.120338 ACACGTTGATGTTAGCGAATTGG 60.120 43.478 0.00 0.00 0.00 3.16
3796 4215 2.159572 ACGTTGATGTTAGCGAATTGGC 60.160 45.455 3.97 3.97 0.00 4.52
3812 4231 3.845781 TTGGCTGGTAGATTCTGGATC 57.154 47.619 0.00 0.00 34.83 3.36
4023 4443 1.009829 GATCTGCCAAGCCTTACACG 58.990 55.000 0.00 0.00 0.00 4.49
4047 4467 2.038164 AGTTGCTCTGCAGACAATCTCA 59.962 45.455 24.62 10.70 40.61 3.27
4275 4695 3.722728 AACTCGGTTACAGTTCTTCGT 57.277 42.857 0.00 0.00 27.00 3.85
4287 4707 1.195674 GTTCTTCGTGCTTGGCTCTTC 59.804 52.381 0.00 0.00 0.00 2.87
4397 4833 9.869757 TTCTCGTGTCTTATCATTCTTCATAAA 57.130 29.630 0.00 0.00 0.00 1.40
4481 4917 8.418597 GACAAGGAGTCAGGTAATATATACCA 57.581 38.462 7.35 0.00 46.77 3.25
4486 4922 9.036980 AGGAGTCAGGTAATATATACCATTGTC 57.963 37.037 7.35 0.00 39.99 3.18
4600 5041 6.190954 ACTTGTCTTCAAAGTTTGTACCAC 57.809 37.500 15.08 8.61 32.87 4.16
4606 5047 2.353269 TCAAAGTTTGTACCACTGCACG 59.647 45.455 15.08 0.00 0.00 5.34
4668 5109 4.076394 GTCCAACCACAGCATAAAACCTA 58.924 43.478 0.00 0.00 0.00 3.08
4676 5118 4.917415 CACAGCATAAAACCTACAACTTGC 59.083 41.667 0.00 0.00 0.00 4.01
4853 5296 2.301583 GCAAGACTCCAACTCTTCCTCT 59.698 50.000 0.00 0.00 0.00 3.69
5156 5599 0.476338 TGGCTTACCACTTGGCAGAA 59.524 50.000 0.00 0.00 42.67 3.02
5219 5662 2.184020 TACAGCATTCTGGCAGCGGT 62.184 55.000 10.34 8.54 44.54 5.68
5396 5839 3.192466 GCATGATTTTGTGGCCTGAATC 58.808 45.455 3.32 8.91 0.00 2.52
5403 5846 2.061509 TGTGGCCTGAATCATGATGG 57.938 50.000 9.46 7.58 0.00 3.51
5729 6506 7.776969 TGCTAAATGATGGCTATTCTTCTTCTT 59.223 33.333 0.00 0.00 0.00 2.52
5739 6516 6.764085 GGCTATTCTTCTTCTTTTCTACCCTC 59.236 42.308 0.00 0.00 0.00 4.30
5752 6529 2.972713 TCTACCCTCCATATCTTGTGCC 59.027 50.000 0.00 0.00 0.00 5.01
5770 6547 7.668052 TCTTGTGCCCAGTATTGTAAAGTATTT 59.332 33.333 0.00 0.00 43.42 1.40
5780 6557 8.893727 AGTATTGTAAAGTATTTGCCAGCTAAG 58.106 33.333 0.00 0.00 40.14 2.18
5796 6573 5.360591 CAGCTAAGGGTGATCGAAATACTT 58.639 41.667 0.00 0.00 42.91 2.24
5890 6677 9.617523 AAACAAAATGAGATGGAAGAACAAATT 57.382 25.926 0.00 0.00 0.00 1.82
5919 6706 6.314648 TCTTCATGAAGCTATTTACTGCACAG 59.685 38.462 27.45 1.92 38.28 3.66
5924 6711 5.767665 TGAAGCTATTTACTGCACAGGAAAA 59.232 36.000 11.89 7.38 43.80 2.29
6047 6843 3.129287 CGCTGGTGGATAATCTTTGCTTT 59.871 43.478 0.00 0.00 0.00 3.51
6048 6844 4.427312 GCTGGTGGATAATCTTTGCTTTG 58.573 43.478 0.00 0.00 0.00 2.77
6052 6848 5.304101 TGGTGGATAATCTTTGCTTTGTGTT 59.696 36.000 0.00 0.00 0.00 3.32
6055 6851 5.304101 TGGATAATCTTTGCTTTGTGTTGGT 59.696 36.000 0.00 0.00 0.00 3.67
6056 6852 5.634859 GGATAATCTTTGCTTTGTGTTGGTG 59.365 40.000 0.00 0.00 0.00 4.17
6057 6853 4.470334 AATCTTTGCTTTGTGTTGGTGT 57.530 36.364 0.00 0.00 0.00 4.16
6058 6854 3.951775 TCTTTGCTTTGTGTTGGTGTT 57.048 38.095 0.00 0.00 0.00 3.32
6059 6855 5.590530 ATCTTTGCTTTGTGTTGGTGTTA 57.409 34.783 0.00 0.00 0.00 2.41
6061 6857 4.218635 TCTTTGCTTTGTGTTGGTGTTACA 59.781 37.500 0.00 0.00 0.00 2.41
6123 8501 2.191641 GCTCTGCAGGTGGATCCC 59.808 66.667 15.13 0.00 36.75 3.85
6124 8502 2.914289 CTCTGCAGGTGGATCCCC 59.086 66.667 15.13 10.24 36.75 4.81
6175 8570 2.672651 TGATGTTGGTGGCAGCCG 60.673 61.111 14.97 0.00 0.00 5.52
6200 8595 0.106149 AGGGTGTGGTCGTCTTTGTC 59.894 55.000 0.00 0.00 0.00 3.18
6201 8596 1.219522 GGGTGTGGTCGTCTTTGTCG 61.220 60.000 0.00 0.00 0.00 4.35
6202 8597 0.529119 GGTGTGGTCGTCTTTGTCGT 60.529 55.000 0.00 0.00 0.00 4.34
6203 8598 1.269206 GGTGTGGTCGTCTTTGTCGTA 60.269 52.381 0.00 0.00 0.00 3.43
6204 8599 2.049228 GTGTGGTCGTCTTTGTCGTAG 58.951 52.381 0.00 0.00 0.00 3.51
6205 8600 1.058404 GTGGTCGTCTTTGTCGTAGC 58.942 55.000 0.00 0.00 0.00 3.58
6206 8601 0.038892 TGGTCGTCTTTGTCGTAGCC 60.039 55.000 0.00 0.00 0.00 3.93
6207 8602 0.243095 GGTCGTCTTTGTCGTAGCCT 59.757 55.000 0.00 0.00 0.00 4.58
6208 8603 1.615502 GTCGTCTTTGTCGTAGCCTC 58.384 55.000 0.00 0.00 0.00 4.70
6231 8626 2.801631 GGGATGGGAGAGCCACTCG 61.802 68.421 3.08 0.00 45.76 4.18
6245 8640 1.534235 ACTCGAGGGCTTGTCCTGT 60.534 57.895 18.41 0.00 37.25 4.00
6249 8644 1.968540 GAGGGCTTGTCCTGTGTGC 60.969 63.158 0.00 0.00 37.25 4.57
6253 8648 2.591429 CTTGTCCTGTGTGCGCCA 60.591 61.111 4.18 0.00 0.00 5.69
6266 8661 3.056313 GCGCCATTCCAGCCACTTC 62.056 63.158 0.00 0.00 0.00 3.01
6267 8662 2.409870 CGCCATTCCAGCCACTTCC 61.410 63.158 0.00 0.00 0.00 3.46
6279 8674 1.355971 CCACTTCCATCGTAACCGTG 58.644 55.000 0.00 0.00 35.01 4.94
6343 8738 2.575461 GCATTTGGGCCAGCAGAC 59.425 61.111 6.23 0.00 0.00 3.51
6370 8765 4.762251 GGACCAGTTCACTAAAGCAATTCT 59.238 41.667 0.00 0.00 0.00 2.40
6407 8802 4.142071 GGCCTTGATCTCCAAAGGAATTTC 60.142 45.833 12.56 0.00 33.76 2.17
6409 8804 5.163571 GCCTTGATCTCCAAAGGAATTTCTC 60.164 44.000 12.56 0.00 33.76 2.87
6411 8806 7.341805 CCTTGATCTCCAAAGGAATTTCTCTA 58.658 38.462 3.93 0.00 33.76 2.43
6412 8807 7.997803 CCTTGATCTCCAAAGGAATTTCTCTAT 59.002 37.037 3.93 0.00 33.76 1.98
6416 8811 7.996758 TCTCCAAAGGAATTTCTCTATAGGT 57.003 36.000 0.00 0.00 0.00 3.08
6491 8890 5.067805 GGTAGGTTGGGATTGCTGATAAAAG 59.932 44.000 0.00 0.00 0.00 2.27
6498 8897 7.531857 TGGGATTGCTGATAAAAGTAAAACA 57.468 32.000 0.00 0.00 0.00 2.83
6518 8917 0.035152 AAATGGATCAGCCGCAGACA 60.035 50.000 0.00 0.00 40.66 3.41
6553 8952 2.690786 TGAGCTTGCCATGCATTTTTC 58.309 42.857 0.00 0.00 38.76 2.29
6584 8983 1.318158 CCAGCTTGTCCAGGATTGGC 61.318 60.000 0.00 0.00 44.63 4.52
6617 9016 4.800914 GCTCAGGTGATGTTCTTGTAGTGT 60.801 45.833 0.00 0.00 0.00 3.55
6638 9037 1.935196 AGAGGTAGCCCAAGGTAGGTA 59.065 52.381 0.00 0.00 0.00 3.08
6662 9061 1.551883 GGGAAATGAAGCAATGGCACT 59.448 47.619 0.00 0.00 44.61 4.40
6663 9062 2.613691 GGAAATGAAGCAATGGCACTG 58.386 47.619 0.00 0.00 44.61 3.66
6673 9072 2.690786 CAATGGCACTGGGAATTGTTG 58.309 47.619 0.00 0.00 0.00 3.33
6674 9073 0.609662 ATGGCACTGGGAATTGTTGC 59.390 50.000 0.00 0.00 0.00 4.17
6675 9074 0.758310 TGGCACTGGGAATTGTTGCA 60.758 50.000 0.00 0.00 0.00 4.08
6676 9075 0.319813 GGCACTGGGAATTGTTGCAC 60.320 55.000 0.00 0.00 0.00 4.57
6677 9076 0.664166 GCACTGGGAATTGTTGCACG 60.664 55.000 0.00 0.00 0.00 5.34
6678 9077 0.950836 CACTGGGAATTGTTGCACGA 59.049 50.000 0.00 0.00 0.00 4.35
6679 9078 1.069022 CACTGGGAATTGTTGCACGAG 60.069 52.381 0.00 0.00 0.00 4.18
6680 9079 1.202758 ACTGGGAATTGTTGCACGAGA 60.203 47.619 0.00 0.00 0.00 4.04
6681 9080 1.466167 CTGGGAATTGTTGCACGAGAG 59.534 52.381 0.00 0.00 0.00 3.20
6695 9094 3.377253 ACGAGAGTGGGTATAGGTCAA 57.623 47.619 0.00 0.00 46.97 3.18
6696 9095 3.912248 ACGAGAGTGGGTATAGGTCAAT 58.088 45.455 0.00 0.00 46.97 2.57
6697 9096 3.637229 ACGAGAGTGGGTATAGGTCAATG 59.363 47.826 0.00 0.00 46.97 2.82
6698 9097 3.637229 CGAGAGTGGGTATAGGTCAATGT 59.363 47.826 0.00 0.00 0.00 2.71
6699 9098 4.261656 CGAGAGTGGGTATAGGTCAATGTC 60.262 50.000 0.00 0.00 0.00 3.06
6700 9099 4.620723 AGAGTGGGTATAGGTCAATGTCA 58.379 43.478 0.00 0.00 0.00 3.58
6701 9100 5.219739 AGAGTGGGTATAGGTCAATGTCAT 58.780 41.667 0.00 0.00 0.00 3.06
6702 9101 5.305644 AGAGTGGGTATAGGTCAATGTCATC 59.694 44.000 0.00 0.00 0.00 2.92
6703 9102 4.968719 AGTGGGTATAGGTCAATGTCATCA 59.031 41.667 0.00 0.00 0.00 3.07
6704 9103 5.428457 AGTGGGTATAGGTCAATGTCATCAA 59.572 40.000 0.00 0.00 0.00 2.57
6705 9104 5.760253 GTGGGTATAGGTCAATGTCATCAAG 59.240 44.000 0.00 0.00 0.00 3.02
6706 9105 5.163205 TGGGTATAGGTCAATGTCATCAAGG 60.163 44.000 0.00 0.00 0.00 3.61
6707 9106 5.071788 GGGTATAGGTCAATGTCATCAAGGA 59.928 44.000 0.00 0.00 0.00 3.36
6708 9107 6.409234 GGGTATAGGTCAATGTCATCAAGGAA 60.409 42.308 0.00 0.00 0.00 3.36
6709 9108 7.054124 GGTATAGGTCAATGTCATCAAGGAAA 58.946 38.462 0.00 0.00 0.00 3.13
6710 9109 7.227512 GGTATAGGTCAATGTCATCAAGGAAAG 59.772 40.741 0.00 0.00 0.00 2.62
6711 9110 5.246981 AGGTCAATGTCATCAAGGAAAGA 57.753 39.130 0.00 0.00 0.00 2.52
6712 9111 5.251764 AGGTCAATGTCATCAAGGAAAGAG 58.748 41.667 0.00 0.00 0.00 2.85
6713 9112 4.397417 GGTCAATGTCATCAAGGAAAGAGG 59.603 45.833 0.00 0.00 0.00 3.69
6714 9113 4.397417 GTCAATGTCATCAAGGAAAGAGGG 59.603 45.833 0.00 0.00 0.00 4.30
6715 9114 4.289410 TCAATGTCATCAAGGAAAGAGGGA 59.711 41.667 0.00 0.00 0.00 4.20
6716 9115 3.988976 TGTCATCAAGGAAAGAGGGAG 57.011 47.619 0.00 0.00 0.00 4.30
6717 9116 3.251484 TGTCATCAAGGAAAGAGGGAGT 58.749 45.455 0.00 0.00 0.00 3.85
6718 9117 4.425772 TGTCATCAAGGAAAGAGGGAGTA 58.574 43.478 0.00 0.00 0.00 2.59
6719 9118 5.032846 TGTCATCAAGGAAAGAGGGAGTAT 58.967 41.667 0.00 0.00 0.00 2.12
6720 9119 5.104776 TGTCATCAAGGAAAGAGGGAGTATG 60.105 44.000 0.00 0.00 0.00 2.39
6721 9120 3.914426 TCAAGGAAAGAGGGAGTATGC 57.086 47.619 0.00 0.00 0.00 3.14
6729 9128 4.760757 GGGAGTATGCCGCTCTTC 57.239 61.111 0.00 0.00 36.28 2.87
6730 9129 2.128729 GGGAGTATGCCGCTCTTCT 58.871 57.895 0.00 0.00 36.28 2.85
6731 9130 0.032815 GGGAGTATGCCGCTCTTCTC 59.967 60.000 0.00 0.00 36.28 2.87
6732 9131 0.032815 GGAGTATGCCGCTCTTCTCC 59.967 60.000 8.04 8.04 35.45 3.71
6733 9132 0.747255 GAGTATGCCGCTCTTCTCCA 59.253 55.000 0.00 0.00 0.00 3.86
6734 9133 1.137086 GAGTATGCCGCTCTTCTCCAA 59.863 52.381 0.00 0.00 0.00 3.53
6735 9134 1.555075 AGTATGCCGCTCTTCTCCAAA 59.445 47.619 0.00 0.00 0.00 3.28
6736 9135 2.171448 AGTATGCCGCTCTTCTCCAAAT 59.829 45.455 0.00 0.00 0.00 2.32
6737 9136 2.134789 ATGCCGCTCTTCTCCAAATT 57.865 45.000 0.00 0.00 0.00 1.82
6738 9137 1.167851 TGCCGCTCTTCTCCAAATTG 58.832 50.000 0.00 0.00 0.00 2.32
6739 9138 1.168714 GCCGCTCTTCTCCAAATTGT 58.831 50.000 0.00 0.00 0.00 2.71
6740 9139 2.290008 TGCCGCTCTTCTCCAAATTGTA 60.290 45.455 0.00 0.00 0.00 2.41
6741 9140 2.352960 GCCGCTCTTCTCCAAATTGTAG 59.647 50.000 0.00 0.00 0.00 2.74
6742 9141 3.861840 CCGCTCTTCTCCAAATTGTAGA 58.138 45.455 0.00 0.00 0.00 2.59
6743 9142 3.619038 CCGCTCTTCTCCAAATTGTAGAC 59.381 47.826 0.00 0.00 0.00 2.59
6744 9143 3.304559 CGCTCTTCTCCAAATTGTAGACG 59.695 47.826 0.00 0.00 0.00 4.18
6745 9144 4.495422 GCTCTTCTCCAAATTGTAGACGA 58.505 43.478 0.00 0.00 0.00 4.20
6746 9145 4.564769 GCTCTTCTCCAAATTGTAGACGAG 59.435 45.833 14.70 14.70 38.19 4.18
6747 9146 5.622460 GCTCTTCTCCAAATTGTAGACGAGA 60.622 44.000 20.60 9.66 37.67 4.04
6748 9147 5.710984 TCTTCTCCAAATTGTAGACGAGAC 58.289 41.667 0.00 0.00 0.00 3.36
6749 9148 4.451629 TCTCCAAATTGTAGACGAGACC 57.548 45.455 0.00 0.00 0.00 3.85
6750 9149 3.830178 TCTCCAAATTGTAGACGAGACCA 59.170 43.478 0.00 0.00 0.00 4.02
6751 9150 4.082190 TCTCCAAATTGTAGACGAGACCAG 60.082 45.833 0.00 0.00 0.00 4.00
6752 9151 3.830178 TCCAAATTGTAGACGAGACCAGA 59.170 43.478 0.00 0.00 0.00 3.86
6753 9152 4.082190 TCCAAATTGTAGACGAGACCAGAG 60.082 45.833 0.00 0.00 0.00 3.35
6754 9153 4.177026 CAAATTGTAGACGAGACCAGAGG 58.823 47.826 0.00 0.00 0.00 3.69
6755 9154 1.174783 TTGTAGACGAGACCAGAGGC 58.825 55.000 0.00 0.00 0.00 4.70
6756 9155 0.037734 TGTAGACGAGACCAGAGGCA 59.962 55.000 0.00 0.00 0.00 4.75
6757 9156 0.736053 GTAGACGAGACCAGAGGCAG 59.264 60.000 0.00 0.00 0.00 4.85
6758 9157 1.032657 TAGACGAGACCAGAGGCAGC 61.033 60.000 0.00 0.00 0.00 5.25
6759 9158 2.601666 ACGAGACCAGAGGCAGCA 60.602 61.111 0.00 0.00 0.00 4.41
6760 9159 2.125753 CGAGACCAGAGGCAGCAC 60.126 66.667 0.00 0.00 0.00 4.40
6761 9160 2.267324 GAGACCAGAGGCAGCACC 59.733 66.667 0.00 0.00 39.61 5.01
6762 9161 2.527624 AGACCAGAGGCAGCACCA 60.528 61.111 0.00 0.00 43.14 4.17
6763 9162 2.116983 GAGACCAGAGGCAGCACCAA 62.117 60.000 0.00 0.00 43.14 3.67
6764 9163 1.228245 GACCAGAGGCAGCACCAAA 60.228 57.895 0.00 0.00 43.14 3.28
6765 9164 0.823356 GACCAGAGGCAGCACCAAAA 60.823 55.000 0.00 0.00 43.14 2.44
6766 9165 1.109323 ACCAGAGGCAGCACCAAAAC 61.109 55.000 0.00 0.00 43.14 2.43
6767 9166 1.108727 CCAGAGGCAGCACCAAAACA 61.109 55.000 0.00 0.00 43.14 2.83
6768 9167 0.313043 CAGAGGCAGCACCAAAACAG 59.687 55.000 0.00 0.00 43.14 3.16
6769 9168 0.825010 AGAGGCAGCACCAAAACAGG 60.825 55.000 0.00 0.00 43.14 4.00
6770 9169 2.029518 GGCAGCACCAAAACAGGC 59.970 61.111 0.00 0.00 38.86 4.85
6771 9170 2.501602 GGCAGCACCAAAACAGGCT 61.502 57.895 0.00 0.00 38.86 4.58
6772 9171 1.178534 GGCAGCACCAAAACAGGCTA 61.179 55.000 0.00 0.00 38.86 3.93
6773 9172 0.039165 GCAGCACCAAAACAGGCTAC 60.039 55.000 0.00 0.00 34.25 3.58
6774 9173 0.598065 CAGCACCAAAACAGGCTACC 59.402 55.000 0.00 0.00 34.25 3.18
6775 9174 0.184933 AGCACCAAAACAGGCTACCA 59.815 50.000 0.00 0.00 34.25 3.25
6776 9175 0.313987 GCACCAAAACAGGCTACCAC 59.686 55.000 0.00 0.00 0.00 4.16
6777 9176 0.958822 CACCAAAACAGGCTACCACC 59.041 55.000 0.00 0.00 0.00 4.61
6778 9177 0.553819 ACCAAAACAGGCTACCACCA 59.446 50.000 0.00 0.00 0.00 4.17
6779 9178 1.146982 ACCAAAACAGGCTACCACCAT 59.853 47.619 0.00 0.00 0.00 3.55
6780 9179 1.545582 CCAAAACAGGCTACCACCATG 59.454 52.381 0.00 0.00 0.00 3.66
6781 9180 2.238521 CAAAACAGGCTACCACCATGT 58.761 47.619 0.00 0.00 0.00 3.21
6782 9181 2.627699 CAAAACAGGCTACCACCATGTT 59.372 45.455 0.00 0.00 34.56 2.71
6783 9182 1.909700 AACAGGCTACCACCATGTTG 58.090 50.000 0.00 0.00 33.00 3.33
6784 9183 0.038166 ACAGGCTACCACCATGTTGG 59.962 55.000 7.91 7.91 45.02 3.77
6797 9196 4.922471 CCATGTTGGTTATCATGCATGA 57.078 40.909 30.47 30.47 39.38 3.07
6798 9197 5.462530 CCATGTTGGTTATCATGCATGAT 57.537 39.130 37.04 37.04 40.61 2.45
6799 9198 5.227152 CCATGTTGGTTATCATGCATGATG 58.773 41.667 40.02 26.17 39.16 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 3.579302 CCTGGCCTTGGGTGGTGA 61.579 66.667 3.32 0.00 0.00 4.02
99 105 3.104843 TCATCACGTGTGACATCAACA 57.895 42.857 16.51 0.00 43.11 3.33
170 215 0.908198 TTTTGGTTTTGGTGCCAGCT 59.092 45.000 0.00 0.00 36.00 4.24
171 216 1.298602 CTTTTGGTTTTGGTGCCAGC 58.701 50.000 0.00 0.00 36.00 4.85
172 217 1.298602 GCTTTTGGTTTTGGTGCCAG 58.701 50.000 0.00 0.00 36.00 4.85
173 218 0.107459 GGCTTTTGGTTTTGGTGCCA 60.107 50.000 0.00 0.00 38.79 4.92
174 219 0.107459 TGGCTTTTGGTTTTGGTGCC 60.107 50.000 0.00 0.00 39.33 5.01
175 220 1.670295 CTTGGCTTTTGGTTTTGGTGC 59.330 47.619 0.00 0.00 0.00 5.01
176 221 1.670295 GCTTGGCTTTTGGTTTTGGTG 59.330 47.619 0.00 0.00 0.00 4.17
177 222 1.559219 AGCTTGGCTTTTGGTTTTGGT 59.441 42.857 0.00 0.00 33.89 3.67
178 223 1.941975 CAGCTTGGCTTTTGGTTTTGG 59.058 47.619 0.00 0.00 36.40 3.28
179 224 1.331447 GCAGCTTGGCTTTTGGTTTTG 59.669 47.619 0.00 0.00 36.40 2.44
180 225 1.065564 TGCAGCTTGGCTTTTGGTTTT 60.066 42.857 0.00 0.00 36.40 2.43
181 226 0.540923 TGCAGCTTGGCTTTTGGTTT 59.459 45.000 0.00 0.00 36.40 3.27
182 227 0.179076 GTGCAGCTTGGCTTTTGGTT 60.179 50.000 0.00 0.00 36.40 3.67
183 228 1.044790 AGTGCAGCTTGGCTTTTGGT 61.045 50.000 0.00 0.00 36.40 3.67
184 229 0.961019 TAGTGCAGCTTGGCTTTTGG 59.039 50.000 0.00 0.00 36.40 3.28
185 230 1.336240 GGTAGTGCAGCTTGGCTTTTG 60.336 52.381 0.00 0.00 36.40 2.44
186 231 0.961753 GGTAGTGCAGCTTGGCTTTT 59.038 50.000 0.00 0.00 36.40 2.27
187 232 1.237285 CGGTAGTGCAGCTTGGCTTT 61.237 55.000 0.00 0.00 36.40 3.51
188 233 1.672356 CGGTAGTGCAGCTTGGCTT 60.672 57.895 0.00 0.00 36.40 4.35
189 234 2.046892 CGGTAGTGCAGCTTGGCT 60.047 61.111 0.00 0.00 40.77 4.75
190 235 3.804193 GCGGTAGTGCAGCTTGGC 61.804 66.667 0.00 0.00 35.39 4.52
191 236 3.127533 GGCGGTAGTGCAGCTTGG 61.128 66.667 3.14 0.00 38.37 3.61
192 237 3.490759 CGGCGGTAGTGCAGCTTG 61.491 66.667 0.00 0.00 38.37 4.01
193 238 4.760047 CCGGCGGTAGTGCAGCTT 62.760 66.667 19.97 0.00 38.37 3.74
198 243 4.692475 AACCACCGGCGGTAGTGC 62.692 66.667 33.65 0.00 38.76 4.40
199 244 2.433664 GAACCACCGGCGGTAGTG 60.434 66.667 33.65 24.18 38.76 2.74
200 245 2.602568 AGAACCACCGGCGGTAGT 60.603 61.111 33.65 28.77 38.76 2.73
201 246 2.125673 CAGAACCACCGGCGGTAG 60.126 66.667 33.65 27.97 38.76 3.18
202 247 4.382320 GCAGAACCACCGGCGGTA 62.382 66.667 33.65 0.00 38.76 4.02
205 250 3.423154 GAAGCAGAACCACCGGCG 61.423 66.667 0.00 0.00 0.00 6.46
208 253 1.302033 AGCTGAAGCAGAACCACCG 60.302 57.895 4.90 0.00 45.16 4.94
264 309 7.543947 AAAATTCCAGAGCTGTTTTTCTTTG 57.456 32.000 0.00 0.00 0.00 2.77
309 354 7.148154 GCTATACCACAATTTCCACACACATAA 60.148 37.037 0.00 0.00 0.00 1.90
330 376 7.668469 TCCCTTCACGATAAAGTCTATGCTATA 59.332 37.037 0.00 0.00 0.00 1.31
333 379 4.649674 TCCCTTCACGATAAAGTCTATGCT 59.350 41.667 0.00 0.00 0.00 3.79
368 419 1.518056 TTCCGGCTACTTGTCGTCGT 61.518 55.000 0.00 0.00 43.10 4.34
432 483 1.968278 AACTAACCTTCTCCTCCCCC 58.032 55.000 0.00 0.00 0.00 5.40
646 732 2.643272 CAGCTGTGTGGCTTGCTG 59.357 61.111 5.25 0.00 45.15 4.41
647 733 3.292936 GCAGCTGTGTGGCTTGCT 61.293 61.111 16.64 0.00 41.00 3.91
648 734 3.292936 AGCAGCTGTGTGGCTTGC 61.293 61.111 16.64 0.00 41.00 4.01
649 735 2.643272 CAGCAGCTGTGTGGCTTG 59.357 61.111 16.64 0.00 41.00 4.01
650 736 3.292936 GCAGCAGCTGTGTGGCTT 61.293 61.111 23.60 0.00 41.00 4.35
651 737 4.574271 TGCAGCAGCTGTGTGGCT 62.574 61.111 23.60 2.02 44.10 4.75
652 738 4.338539 GTGCAGCAGCTGTGTGGC 62.339 66.667 23.60 13.92 42.74 5.01
653 739 2.903350 TGTGCAGCAGCTGTGTGG 60.903 61.111 23.60 3.69 42.74 4.17
654 740 2.637589 CTGTGCAGCAGCTGTGTG 59.362 61.111 23.60 14.21 42.74 3.82
689 776 0.617249 CAGAGTTCAGGCCCCTCTCT 60.617 60.000 0.00 5.29 33.38 3.10
690 777 0.616111 TCAGAGTTCAGGCCCCTCTC 60.616 60.000 0.00 2.72 33.38 3.20
691 778 0.617249 CTCAGAGTTCAGGCCCCTCT 60.617 60.000 0.00 2.18 36.00 3.69
693 780 1.614824 CCTCAGAGTTCAGGCCCCT 60.615 63.158 0.00 0.00 0.00 4.79
695 782 1.201429 TTCCCTCAGAGTTCAGGCCC 61.201 60.000 0.00 0.00 0.00 5.80
696 783 0.251634 CTTCCCTCAGAGTTCAGGCC 59.748 60.000 0.00 0.00 0.00 5.19
697 784 1.270907 TCTTCCCTCAGAGTTCAGGC 58.729 55.000 0.00 0.00 0.00 4.85
698 785 3.071602 TGTTTCTTCCCTCAGAGTTCAGG 59.928 47.826 0.00 0.00 0.00 3.86
700 787 3.967326 TCTGTTTCTTCCCTCAGAGTTCA 59.033 43.478 0.00 0.00 33.77 3.18
701 788 4.565022 CTCTGTTTCTTCCCTCAGAGTTC 58.435 47.826 11.39 0.00 44.82 3.01
744 837 4.027674 GAGAAAAAGCTCCTCCCTTTCT 57.972 45.455 0.00 0.00 38.67 2.52
834 928 2.108425 GGGGGTGGGGAGAAAGATAATC 59.892 54.545 0.00 0.00 0.00 1.75
870 964 0.047176 AGAGGGAGAGAGGGAGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
875 969 4.583309 AGTAAGATAGAGGGAGAGAGGGA 58.417 47.826 0.00 0.00 0.00 4.20
877 971 5.548056 AGAGAGTAAGATAGAGGGAGAGAGG 59.452 48.000 0.00 0.00 0.00 3.69
908 1008 1.149782 TCTCCTCCTCCTCCACCAGT 61.150 60.000 0.00 0.00 0.00 4.00
1002 1111 0.926220 AAATGGAAGGGAGGGAGGGG 60.926 60.000 0.00 0.00 0.00 4.79
1033 1151 3.393970 CGCAGAGCAAGGGAGGGA 61.394 66.667 0.00 0.00 0.00 4.20
1081 1204 2.686915 AGCCATACATGCAAGAAGAAGC 59.313 45.455 0.00 0.00 0.00 3.86
1129 1255 0.532573 TCATCGGACTGGAAGCAGAC 59.467 55.000 0.00 0.00 37.60 3.51
1137 1263 2.545952 CGAAACCCTATCATCGGACTGG 60.546 54.545 0.00 0.00 0.00 4.00
1174 1300 2.098117 GGAAATCGGAAGCATGGACAAG 59.902 50.000 0.00 0.00 0.00 3.16
1181 1307 3.303351 AATCCAGGAAATCGGAAGCAT 57.697 42.857 0.00 0.00 34.22 3.79
1190 1316 6.663734 CCCTACTTCTACAAATCCAGGAAAT 58.336 40.000 0.00 0.00 0.00 2.17
1293 1423 2.380084 TCCTCGAGAAAATCCAACCG 57.620 50.000 15.71 0.00 0.00 4.44
1391 1523 6.648725 AGACTGAAAGAACATAATACGCAC 57.351 37.500 0.00 0.00 37.43 5.34
1398 1530 7.998964 AGAGGGAAAAAGACTGAAAGAACATAA 59.001 33.333 0.00 0.00 37.43 1.90
1418 1562 8.733092 AGAAGATATCACATAATTCAGAGGGA 57.267 34.615 5.32 0.00 0.00 4.20
1448 1592 4.281688 TGGCAATTTGAGAAGGGAAAAGAG 59.718 41.667 0.00 0.00 0.00 2.85
1449 1593 4.222336 TGGCAATTTGAGAAGGGAAAAGA 58.778 39.130 0.00 0.00 0.00 2.52
1450 1594 4.605640 TGGCAATTTGAGAAGGGAAAAG 57.394 40.909 0.00 0.00 0.00 2.27
1579 1723 7.282332 AGGAAATCAAGGAGAAAGACAAAAG 57.718 36.000 0.00 0.00 0.00 2.27
1584 1728 5.172687 AGGAGGAAATCAAGGAGAAAGAC 57.827 43.478 0.00 0.00 0.00 3.01
1630 1775 4.798574 CAATTGTAACAGGAAACAGAGCC 58.201 43.478 0.00 0.00 0.00 4.70
1648 1793 6.767423 ACAATAACAGCTTGAAAAAGGCAATT 59.233 30.769 0.00 0.00 0.00 2.32
1649 1794 6.203338 CACAATAACAGCTTGAAAAAGGCAAT 59.797 34.615 0.00 0.00 0.00 3.56
1660 1805 5.207768 GTGACTCAACACAATAACAGCTTG 58.792 41.667 0.00 0.00 40.11 4.01
1693 1839 7.067981 AGGATTTGATTAGCACCAAGAATCTTC 59.932 37.037 0.00 0.00 32.01 2.87
1746 1903 8.063200 ACTTGATAAAGCTAAAATAACCACCC 57.937 34.615 0.00 0.00 0.00 4.61
1769 1926 5.413833 TCGCAGTTTACAAGCTAGTACTACT 59.586 40.000 0.00 0.00 0.00 2.57
1850 2007 5.180492 TCGCCGAAATTCTGTTTGAATACTT 59.820 36.000 0.00 0.00 43.99 2.24
1854 2011 3.365969 GGTCGCCGAAATTCTGTTTGAAT 60.366 43.478 0.00 0.00 46.49 2.57
1875 2032 2.012673 GAACCTGCTCAGCATAGTTGG 58.987 52.381 17.57 9.80 38.13 3.77
1927 2084 1.153901 CCGCGTTACCGATGTGACT 60.154 57.895 4.92 0.00 35.63 3.41
1931 2088 1.226773 GCTACCGCGTTACCGATGT 60.227 57.895 4.92 0.00 35.63 3.06
1945 2110 0.318275 CCTCGAAGATGCTCCGCTAC 60.318 60.000 0.00 0.00 33.89 3.58
2062 2227 0.026285 CGCGGCCATACGAGAAAAAG 59.974 55.000 2.24 0.00 35.64 2.27
2068 2233 1.641123 AAAAACCGCGGCCATACGAG 61.641 55.000 28.58 0.00 35.47 4.18
2502 2685 1.302271 CAGCTTGCTCTGCAGTGGA 60.302 57.895 14.67 10.11 40.61 4.02
2527 2710 4.477780 TGAACGTGAAAAGTTTGACAACC 58.522 39.130 0.00 0.00 39.06 3.77
2680 3055 1.679944 CCAACCTCCTGCAATCGACAT 60.680 52.381 0.00 0.00 0.00 3.06
2685 3063 2.726821 TCAATCCAACCTCCTGCAATC 58.273 47.619 0.00 0.00 0.00 2.67
2847 3266 1.344438 GACATCGGATAGGATGCACCA 59.656 52.381 7.86 0.00 46.11 4.17
3060 3479 8.048514 TCATTCTTCATATCTTTCACATGACCA 58.951 33.333 0.00 0.00 0.00 4.02
3141 3560 1.311859 CACCATTGTGGGGATCATCG 58.688 55.000 0.52 0.00 46.22 3.84
3222 3641 2.999063 CCTTGGCCTTGGCCTTGG 60.999 66.667 28.37 24.23 0.00 3.61
3495 3914 3.084039 CTCTTTGCCATCTGCTTTACCA 58.916 45.455 0.00 0.00 42.00 3.25
3736 4155 4.959596 TCGGTTAGACATACTGACAGTC 57.040 45.455 12.39 0.00 36.93 3.51
3744 4163 8.699283 AAGTCAAACTAATCGGTTAGACATAC 57.301 34.615 22.07 13.28 39.77 2.39
3795 4214 3.640967 AGTCTGATCCAGAATCTACCAGC 59.359 47.826 0.00 0.00 42.46 4.85
3796 4215 4.892345 TCAGTCTGATCCAGAATCTACCAG 59.108 45.833 0.00 0.00 42.46 4.00
3812 4231 6.488344 TGGATAGAAGCTACTATGTCAGTCTG 59.512 42.308 0.00 0.00 38.80 3.51
4047 4467 0.250124 TCAAGCACCGGAAATGTCGT 60.250 50.000 9.46 0.00 0.00 4.34
4275 4695 0.106708 AGTGTTCGAAGAGCCAAGCA 59.893 50.000 0.00 0.00 36.75 3.91
4287 4707 0.249741 ACGGGTGAAGGAAGTGTTCG 60.250 55.000 0.00 0.00 0.00 3.95
4475 4911 5.647658 CAGCACAGGAAAAGACAATGGTATA 59.352 40.000 0.00 0.00 0.00 1.47
4480 4916 4.572985 TTCAGCACAGGAAAAGACAATG 57.427 40.909 0.00 0.00 0.00 2.82
4481 4917 4.828939 TGATTCAGCACAGGAAAAGACAAT 59.171 37.500 0.00 0.00 0.00 2.71
4486 4922 5.381174 TCAATGATTCAGCACAGGAAAAG 57.619 39.130 0.00 0.00 0.00 2.27
4606 5047 9.556030 GAGAAATAAAATACAAGCAAGTACACC 57.444 33.333 0.00 0.00 0.00 4.16
4668 5109 8.177119 TGTTATAAGGAGAAAATGCAAGTTGT 57.823 30.769 4.48 0.00 0.00 3.32
4729 5172 5.702865 TCGAAATCTGGAAAAGCATGAAAG 58.297 37.500 0.00 0.00 0.00 2.62
5141 5584 2.582052 CCAAGTTCTGCCAAGTGGTAA 58.418 47.619 0.00 0.00 37.57 2.85
5156 5599 0.319405 CGTTTCCGTACCTCCCAAGT 59.681 55.000 0.00 0.00 0.00 3.16
5207 5650 2.973899 GAGAGACCGCTGCCAGAA 59.026 61.111 0.00 0.00 0.00 3.02
5249 5692 1.605451 ATCGTCACTGACACCGGGA 60.605 57.895 6.32 0.00 32.09 5.14
5396 5839 5.236282 GTCCTGATCTGATGTACCATCATG 58.764 45.833 7.32 3.24 0.00 3.07
5403 5846 5.053145 GTCAATGGTCCTGATCTGATGTAC 58.947 45.833 0.38 0.00 0.00 2.90
5729 6506 4.141482 GGCACAAGATATGGAGGGTAGAAA 60.141 45.833 0.00 0.00 0.00 2.52
5739 6516 4.464008 ACAATACTGGGCACAAGATATGG 58.536 43.478 0.00 0.00 0.00 2.74
5752 6529 6.095440 AGCTGGCAAATACTTTACAATACTGG 59.905 38.462 0.00 0.00 0.00 4.00
5770 6547 0.975556 TCGATCACCCTTAGCTGGCA 60.976 55.000 0.00 0.00 0.00 4.92
5796 6573 2.819019 TGCATCTTGAATGGAAAAGCGA 59.181 40.909 0.00 0.00 0.00 4.93
5834 6611 2.703416 TGTTCGCTTCATGAAGAGCAT 58.297 42.857 34.43 0.00 40.79 3.79
5835 6612 2.168326 TGTTCGCTTCATGAAGAGCA 57.832 45.000 34.43 21.70 40.79 4.26
5839 6616 4.675190 ACAGATTGTTCGCTTCATGAAG 57.325 40.909 27.82 27.82 41.24 3.02
5840 6617 5.468409 TGTAACAGATTGTTCGCTTCATGAA 59.532 36.000 8.12 8.12 40.22 2.57
5841 6618 4.994217 TGTAACAGATTGTTCGCTTCATGA 59.006 37.500 0.00 0.00 40.22 3.07
5843 6620 5.940192 TTGTAACAGATTGTTCGCTTCAT 57.060 34.783 0.00 0.00 40.22 2.57
5845 6622 5.507077 TGTTTGTAACAGATTGTTCGCTTC 58.493 37.500 0.00 0.00 40.22 3.86
5890 6677 9.394767 TGCAGTAAATAGCTTCATGAAGAAATA 57.605 29.630 34.43 23.16 40.79 1.40
5898 6685 4.877823 TCCTGTGCAGTAAATAGCTTCATG 59.122 41.667 0.00 0.00 0.00 3.07
5899 6686 5.102953 TCCTGTGCAGTAAATAGCTTCAT 57.897 39.130 0.00 0.00 0.00 2.57
5924 6711 7.461749 TCAAATTTGAAGGTTGTAGAGGAGAT 58.538 34.615 18.45 0.00 33.55 2.75
6005 6794 6.348132 CCAGCGTGATTTAACACAATAGTTGA 60.348 38.462 0.00 0.00 40.34 3.18
6007 6796 5.472137 ACCAGCGTGATTTAACACAATAGTT 59.528 36.000 0.00 0.00 40.34 2.24
6009 6798 5.323900 CACCAGCGTGATTTAACACAATAG 58.676 41.667 0.00 0.00 43.14 1.73
6010 6799 4.155099 CCACCAGCGTGATTTAACACAATA 59.845 41.667 0.00 0.00 43.14 1.90
6011 6800 3.057596 CCACCAGCGTGATTTAACACAAT 60.058 43.478 0.00 0.00 43.14 2.71
6020 6815 3.845781 AGATTATCCACCAGCGTGATT 57.154 42.857 0.00 0.00 43.14 2.57
6047 6843 4.839121 ACTTCTCTTGTAACACCAACACA 58.161 39.130 0.00 0.00 0.00 3.72
6048 6844 5.813080 AACTTCTCTTGTAACACCAACAC 57.187 39.130 0.00 0.00 0.00 3.32
6074 8452 2.231478 CCTCTTCCGTCTTTGCTACAGA 59.769 50.000 0.00 0.00 0.00 3.41
6075 8453 2.028930 ACCTCTTCCGTCTTTGCTACAG 60.029 50.000 0.00 0.00 0.00 2.74
6086 8464 3.003763 GCCCCTGACCTCTTCCGT 61.004 66.667 0.00 0.00 0.00 4.69
6152 8547 2.677003 GCCACCAACATCACCGTCG 61.677 63.158 0.00 0.00 0.00 5.12
6175 8570 2.432628 CGACCACACCCTCTTCGC 60.433 66.667 0.00 0.00 0.00 4.70
6187 8582 0.038892 GGCTACGACAAAGACGACCA 60.039 55.000 0.00 0.00 34.70 4.02
6200 8595 1.524863 CCATCCCCTACGAGGCTACG 61.525 65.000 0.00 0.00 32.73 3.51
6201 8596 1.186267 CCCATCCCCTACGAGGCTAC 61.186 65.000 0.00 0.00 32.73 3.58
6202 8597 1.155390 CCCATCCCCTACGAGGCTA 59.845 63.158 0.00 0.00 32.73 3.93
6203 8598 2.122813 CCCATCCCCTACGAGGCT 60.123 66.667 0.00 0.00 32.73 4.58
6204 8599 2.122989 TCCCATCCCCTACGAGGC 60.123 66.667 0.00 0.00 32.73 4.70
6205 8600 0.540830 CTCTCCCATCCCCTACGAGG 60.541 65.000 0.00 0.00 34.30 4.63
6206 8601 1.182385 GCTCTCCCATCCCCTACGAG 61.182 65.000 0.00 0.00 0.00 4.18
6207 8602 1.152525 GCTCTCCCATCCCCTACGA 60.153 63.158 0.00 0.00 0.00 3.43
6208 8603 2.210711 GGCTCTCCCATCCCCTACG 61.211 68.421 0.00 0.00 0.00 3.51
6231 8626 1.968540 GCACACAGGACAAGCCCTC 60.969 63.158 0.00 0.00 37.37 4.30
6245 8640 4.657408 TGGCTGGAATGGCGCACA 62.657 61.111 10.83 5.20 35.06 4.57
6249 8644 2.409870 GGAAGTGGCTGGAATGGCG 61.410 63.158 0.00 0.00 35.06 5.69
6253 8648 0.620556 ACGATGGAAGTGGCTGGAAT 59.379 50.000 0.00 0.00 0.00 3.01
6266 8661 2.188469 CCCCCACGGTTACGATGG 59.812 66.667 0.00 0.00 44.60 3.51
6267 8662 2.512974 GCCCCCACGGTTACGATG 60.513 66.667 0.00 0.00 44.60 3.84
6286 8681 1.615107 CGACCTCAAACGCTTCGGAC 61.615 60.000 0.00 0.00 0.00 4.79
6294 8689 0.652592 GGCATCATCGACCTCAAACG 59.347 55.000 0.00 0.00 0.00 3.60
6337 8732 2.100879 GAACTGGTCCACCGTCTGCT 62.101 60.000 0.00 0.00 39.43 4.24
6343 8738 2.413837 CTTTAGTGAACTGGTCCACCG 58.586 52.381 0.00 0.00 39.43 4.94
6407 8802 8.717821 TCAAACAAATCGACAAAACCTATAGAG 58.282 33.333 0.00 0.00 0.00 2.43
6409 8804 9.277565 CATCAAACAAATCGACAAAACCTATAG 57.722 33.333 0.00 0.00 0.00 1.31
6411 8806 7.657336 ACATCAAACAAATCGACAAAACCTAT 58.343 30.769 0.00 0.00 0.00 2.57
6412 8807 7.033530 ACATCAAACAAATCGACAAAACCTA 57.966 32.000 0.00 0.00 0.00 3.08
6413 8808 5.901552 ACATCAAACAAATCGACAAAACCT 58.098 33.333 0.00 0.00 0.00 3.50
6414 8809 5.174943 GGACATCAAACAAATCGACAAAACC 59.825 40.000 0.00 0.00 0.00 3.27
6416 8811 5.163509 TGGGACATCAAACAAATCGACAAAA 60.164 36.000 0.00 0.00 0.00 2.44
6491 8890 3.612423 GCGGCTGATCCATTTTGTTTTAC 59.388 43.478 0.00 0.00 34.01 2.01
6498 8897 1.098050 GTCTGCGGCTGATCCATTTT 58.902 50.000 12.78 0.00 34.01 1.82
6518 8917 1.023513 GCTCAAGTCCGCTGATGCTT 61.024 55.000 0.00 0.00 36.97 3.91
6532 8931 2.843401 AAAATGCATGGCAAGCTCAA 57.157 40.000 16.31 0.00 43.62 3.02
6553 8952 3.694058 AAGCTGGCCTCCATGCTCG 62.694 63.158 3.32 0.00 37.14 5.03
6584 8983 3.324268 ACATCACCTGAGCAGATATCCAG 59.676 47.826 0.00 0.00 0.00 3.86
6617 9016 1.935196 ACCTACCTTGGGCTACCTCTA 59.065 52.381 0.00 0.00 37.76 2.43
6638 9037 2.093341 GCCATTGCTTCATTTCCCATGT 60.093 45.455 0.00 0.00 33.53 3.21
6662 9061 1.202758 ACTCTCGTGCAACAATTCCCA 60.203 47.619 0.00 0.00 35.74 4.37
6663 9062 1.197721 CACTCTCGTGCAACAATTCCC 59.802 52.381 0.00 0.00 35.74 3.97
6673 9072 1.337387 GACCTATACCCACTCTCGTGC 59.663 57.143 0.00 0.00 39.86 5.34
6674 9073 2.651455 TGACCTATACCCACTCTCGTG 58.349 52.381 0.00 0.00 40.89 4.35
6675 9074 3.377253 TTGACCTATACCCACTCTCGT 57.623 47.619 0.00 0.00 0.00 4.18
6676 9075 3.637229 ACATTGACCTATACCCACTCTCG 59.363 47.826 0.00 0.00 0.00 4.04
6677 9076 4.649674 TGACATTGACCTATACCCACTCTC 59.350 45.833 0.00 0.00 0.00 3.20
6678 9077 4.620723 TGACATTGACCTATACCCACTCT 58.379 43.478 0.00 0.00 0.00 3.24
6679 9078 5.070446 TGATGACATTGACCTATACCCACTC 59.930 44.000 0.00 0.00 0.00 3.51
6680 9079 4.968719 TGATGACATTGACCTATACCCACT 59.031 41.667 0.00 0.00 0.00 4.00
6681 9080 5.290493 TGATGACATTGACCTATACCCAC 57.710 43.478 0.00 0.00 0.00 4.61
6682 9081 5.163205 CCTTGATGACATTGACCTATACCCA 60.163 44.000 0.00 0.00 0.00 4.51
6683 9082 5.071788 TCCTTGATGACATTGACCTATACCC 59.928 44.000 0.00 0.00 0.00 3.69
6684 9083 6.174720 TCCTTGATGACATTGACCTATACC 57.825 41.667 0.00 0.00 0.00 2.73
6685 9084 7.987458 TCTTTCCTTGATGACATTGACCTATAC 59.013 37.037 0.00 0.00 0.00 1.47
6686 9085 8.089625 TCTTTCCTTGATGACATTGACCTATA 57.910 34.615 0.00 0.00 0.00 1.31
6687 9086 6.962182 TCTTTCCTTGATGACATTGACCTAT 58.038 36.000 0.00 0.00 0.00 2.57
6688 9087 6.373005 TCTTTCCTTGATGACATTGACCTA 57.627 37.500 0.00 0.00 0.00 3.08
6689 9088 5.246981 TCTTTCCTTGATGACATTGACCT 57.753 39.130 0.00 0.00 0.00 3.85
6690 9089 4.397417 CCTCTTTCCTTGATGACATTGACC 59.603 45.833 0.00 0.00 0.00 4.02
6691 9090 4.397417 CCCTCTTTCCTTGATGACATTGAC 59.603 45.833 0.00 0.00 0.00 3.18
6692 9091 4.289410 TCCCTCTTTCCTTGATGACATTGA 59.711 41.667 0.00 0.00 0.00 2.57
6693 9092 4.592942 TCCCTCTTTCCTTGATGACATTG 58.407 43.478 0.00 0.00 0.00 2.82
6694 9093 4.290722 ACTCCCTCTTTCCTTGATGACATT 59.709 41.667 0.00 0.00 0.00 2.71
6695 9094 3.848975 ACTCCCTCTTTCCTTGATGACAT 59.151 43.478 0.00 0.00 0.00 3.06
6696 9095 3.251484 ACTCCCTCTTTCCTTGATGACA 58.749 45.455 0.00 0.00 0.00 3.58
6697 9096 3.990959 ACTCCCTCTTTCCTTGATGAC 57.009 47.619 0.00 0.00 0.00 3.06
6698 9097 4.141620 GCATACTCCCTCTTTCCTTGATGA 60.142 45.833 0.00 0.00 0.00 2.92
6699 9098 4.133078 GCATACTCCCTCTTTCCTTGATG 58.867 47.826 0.00 0.00 0.00 3.07
6700 9099 3.137360 GGCATACTCCCTCTTTCCTTGAT 59.863 47.826 0.00 0.00 0.00 2.57
6701 9100 2.505819 GGCATACTCCCTCTTTCCTTGA 59.494 50.000 0.00 0.00 0.00 3.02
6702 9101 2.743183 CGGCATACTCCCTCTTTCCTTG 60.743 54.545 0.00 0.00 0.00 3.61
6703 9102 1.486726 CGGCATACTCCCTCTTTCCTT 59.513 52.381 0.00 0.00 0.00 3.36
6704 9103 1.123928 CGGCATACTCCCTCTTTCCT 58.876 55.000 0.00 0.00 0.00 3.36
6705 9104 0.533085 GCGGCATACTCCCTCTTTCC 60.533 60.000 0.00 0.00 0.00 3.13
6706 9105 0.466124 AGCGGCATACTCCCTCTTTC 59.534 55.000 1.45 0.00 0.00 2.62
6707 9106 0.466124 GAGCGGCATACTCCCTCTTT 59.534 55.000 1.45 0.00 0.00 2.52
6708 9107 0.397816 AGAGCGGCATACTCCCTCTT 60.398 55.000 1.45 0.00 33.09 2.85
6709 9108 0.397816 AAGAGCGGCATACTCCCTCT 60.398 55.000 1.45 0.00 36.19 3.69
6710 9109 0.032815 GAAGAGCGGCATACTCCCTC 59.967 60.000 1.45 0.00 34.56 4.30
6711 9110 0.397816 AGAAGAGCGGCATACTCCCT 60.398 55.000 1.45 0.00 34.56 4.20
6712 9111 0.032815 GAGAAGAGCGGCATACTCCC 59.967 60.000 1.45 0.00 34.56 4.30
6713 9112 0.032815 GGAGAAGAGCGGCATACTCC 59.967 60.000 15.42 15.42 37.37 3.85
6714 9113 0.747255 TGGAGAAGAGCGGCATACTC 59.253 55.000 1.45 5.44 0.00 2.59
6715 9114 1.195115 TTGGAGAAGAGCGGCATACT 58.805 50.000 1.45 0.00 0.00 2.12
6716 9115 2.024176 TTTGGAGAAGAGCGGCATAC 57.976 50.000 1.45 0.00 0.00 2.39
6717 9116 2.945008 CAATTTGGAGAAGAGCGGCATA 59.055 45.455 1.45 0.00 0.00 3.14
6718 9117 1.747355 CAATTTGGAGAAGAGCGGCAT 59.253 47.619 1.45 0.00 0.00 4.40
6719 9118 1.167851 CAATTTGGAGAAGAGCGGCA 58.832 50.000 1.45 0.00 0.00 5.69
6720 9119 1.168714 ACAATTTGGAGAAGAGCGGC 58.831 50.000 0.78 0.00 0.00 6.53
6721 9120 3.619038 GTCTACAATTTGGAGAAGAGCGG 59.381 47.826 12.95 0.00 39.43 5.52
6722 9121 3.304559 CGTCTACAATTTGGAGAAGAGCG 59.695 47.826 16.84 10.86 39.43 5.03
6723 9122 4.495422 TCGTCTACAATTTGGAGAAGAGC 58.505 43.478 19.49 5.31 40.17 4.09
6725 9124 5.336531 GGTCTCGTCTACAATTTGGAGAAGA 60.337 44.000 21.28 21.28 42.25 2.87
6726 9125 4.865365 GGTCTCGTCTACAATTTGGAGAAG 59.135 45.833 12.95 14.62 39.43 2.85
6727 9126 4.282449 TGGTCTCGTCTACAATTTGGAGAA 59.718 41.667 12.95 0.00 39.43 2.87
6728 9127 3.830178 TGGTCTCGTCTACAATTTGGAGA 59.170 43.478 7.26 7.26 34.28 3.71
6729 9128 4.082190 TCTGGTCTCGTCTACAATTTGGAG 60.082 45.833 1.88 1.88 0.00 3.86
6730 9129 3.830178 TCTGGTCTCGTCTACAATTTGGA 59.170 43.478 0.78 0.00 0.00 3.53
6731 9130 4.177026 CTCTGGTCTCGTCTACAATTTGG 58.823 47.826 0.78 0.00 0.00 3.28
6732 9131 4.177026 CCTCTGGTCTCGTCTACAATTTG 58.823 47.826 0.00 0.00 0.00 2.32
6733 9132 3.368531 GCCTCTGGTCTCGTCTACAATTT 60.369 47.826 0.00 0.00 0.00 1.82
6734 9133 2.166664 GCCTCTGGTCTCGTCTACAATT 59.833 50.000 0.00 0.00 0.00 2.32
6735 9134 1.751924 GCCTCTGGTCTCGTCTACAAT 59.248 52.381 0.00 0.00 0.00 2.71
6736 9135 1.174783 GCCTCTGGTCTCGTCTACAA 58.825 55.000 0.00 0.00 0.00 2.41
6737 9136 0.037734 TGCCTCTGGTCTCGTCTACA 59.962 55.000 0.00 0.00 0.00 2.74
6738 9137 0.736053 CTGCCTCTGGTCTCGTCTAC 59.264 60.000 0.00 0.00 0.00 2.59
6739 9138 1.032657 GCTGCCTCTGGTCTCGTCTA 61.033 60.000 0.00 0.00 0.00 2.59
6740 9139 2.347322 GCTGCCTCTGGTCTCGTCT 61.347 63.158 0.00 0.00 0.00 4.18
6741 9140 2.183046 GCTGCCTCTGGTCTCGTC 59.817 66.667 0.00 0.00 0.00 4.20
6742 9141 2.601666 TGCTGCCTCTGGTCTCGT 60.602 61.111 0.00 0.00 0.00 4.18
6743 9142 2.125753 GTGCTGCCTCTGGTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
6744 9143 2.116983 TTGGTGCTGCCTCTGGTCTC 62.117 60.000 0.00 0.00 38.35 3.36
6745 9144 1.708993 TTTGGTGCTGCCTCTGGTCT 61.709 55.000 0.00 0.00 38.35 3.85
6746 9145 0.823356 TTTTGGTGCTGCCTCTGGTC 60.823 55.000 0.00 0.00 38.35 4.02
6747 9146 1.109323 GTTTTGGTGCTGCCTCTGGT 61.109 55.000 0.00 0.00 38.35 4.00
6748 9147 1.108727 TGTTTTGGTGCTGCCTCTGG 61.109 55.000 0.00 0.00 38.35 3.86
6749 9148 0.313043 CTGTTTTGGTGCTGCCTCTG 59.687 55.000 0.00 0.00 38.35 3.35
6750 9149 0.825010 CCTGTTTTGGTGCTGCCTCT 60.825 55.000 0.00 0.00 38.35 3.69
6751 9150 1.662044 CCTGTTTTGGTGCTGCCTC 59.338 57.895 0.00 0.00 38.35 4.70
6752 9151 2.501602 GCCTGTTTTGGTGCTGCCT 61.502 57.895 0.00 0.00 38.35 4.75
6753 9152 1.178534 TAGCCTGTTTTGGTGCTGCC 61.179 55.000 0.00 0.00 35.34 4.85
6754 9153 0.039165 GTAGCCTGTTTTGGTGCTGC 60.039 55.000 0.00 0.00 35.34 5.25
6755 9154 0.598065 GGTAGCCTGTTTTGGTGCTG 59.402 55.000 0.00 0.00 35.34 4.41
6756 9155 0.184933 TGGTAGCCTGTTTTGGTGCT 59.815 50.000 0.00 0.00 37.84 4.40
6757 9156 0.313987 GTGGTAGCCTGTTTTGGTGC 59.686 55.000 0.00 0.00 0.00 5.01
6758 9157 0.958822 GGTGGTAGCCTGTTTTGGTG 59.041 55.000 0.00 0.00 0.00 4.17
6759 9158 0.553819 TGGTGGTAGCCTGTTTTGGT 59.446 50.000 0.00 0.00 0.00 3.67
6760 9159 1.545582 CATGGTGGTAGCCTGTTTTGG 59.454 52.381 0.00 0.00 0.00 3.28
6761 9160 2.238521 ACATGGTGGTAGCCTGTTTTG 58.761 47.619 0.00 0.00 0.00 2.44
6762 9161 2.627699 CAACATGGTGGTAGCCTGTTTT 59.372 45.455 1.63 0.00 32.00 2.43
6763 9162 2.238521 CAACATGGTGGTAGCCTGTTT 58.761 47.619 1.63 0.00 32.00 2.83
6764 9163 1.547675 CCAACATGGTGGTAGCCTGTT 60.548 52.381 22.48 0.00 33.42 3.16
6765 9164 0.038166 CCAACATGGTGGTAGCCTGT 59.962 55.000 22.48 0.00 33.63 4.00
6766 9165 2.872408 CCAACATGGTGGTAGCCTG 58.128 57.895 22.48 0.00 33.63 4.85
6773 9172 8.139214 ATCATGCATGATAACCAACATGGTGG 62.139 42.308 35.28 28.68 46.58 4.61
6774 9173 5.221362 ATCATGCATGATAACCAACATGGTG 60.221 40.000 35.28 2.91 46.58 4.17
6775 9174 4.897076 ATCATGCATGATAACCAACATGGT 59.103 37.500 35.28 12.08 45.59 3.55
6776 9175 4.922471 TCATGCATGATAACCAACATGG 57.078 40.909 25.42 0.00 45.02 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.