Multiple sequence alignment - TraesCS5A01G006300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G006300 chr5A 100.000 5383 0 0 1 5383 3554694 3560076 0.000000e+00 9941.0
1 TraesCS5A01G006300 chr5A 83.240 2136 224 64 752 2799 3698728 3700817 0.000000e+00 1838.0
2 TraesCS5A01G006300 chr5A 91.243 354 16 9 4054 4393 3701099 3701451 8.160000e-128 468.0
3 TraesCS5A01G006300 chr5A 85.199 277 36 5 3017 3291 205013082 205012809 4.110000e-71 279.0
4 TraesCS5A01G006300 chr5A 82.081 173 21 8 86 255 4024199 4024034 7.270000e-29 139.0
5 TraesCS5A01G006300 chr5A 75.451 277 42 14 3296 3571 689708414 689708665 1.580000e-20 111.0
6 TraesCS5A01G006300 chr5A 76.471 272 20 30 471 736 3698439 3698672 2.050000e-19 108.0
7 TraesCS5A01G006300 chr5A 74.476 286 42 17 3303 3569 632277814 632278087 1.600000e-15 95.3
8 TraesCS5A01G006300 chr5D 93.561 1553 80 8 3848 5383 5154511 5152962 0.000000e+00 2296.0
9 TraesCS5A01G006300 chr5D 89.398 1330 69 21 648 1930 5164699 5163395 0.000000e+00 1609.0
10 TraesCS5A01G006300 chr5D 93.824 923 55 2 2007 2929 5156735 5155815 0.000000e+00 1387.0
11 TraesCS5A01G006300 chr5D 92.823 836 53 6 3016 3850 5155384 5154555 0.000000e+00 1205.0
12 TraesCS5A01G006300 chr5D 81.437 1002 120 39 1416 2412 5118526 5117586 0.000000e+00 760.0
13 TraesCS5A01G006300 chr5D 91.124 338 30 0 4059 4396 5117252 5116915 4.910000e-125 459.0
14 TraesCS5A01G006300 chr5D 83.495 515 38 11 737 1218 5119249 5118749 2.300000e-118 436.0
15 TraesCS5A01G006300 chr5D 86.617 269 27 8 3016 3281 317387056 317386794 6.820000e-74 289.0
16 TraesCS5A01G006300 chr5D 91.509 106 8 1 4925 5030 460172373 460172477 1.560000e-30 145.0
17 TraesCS5A01G006300 chr5D 90.000 110 10 1 4914 5022 180472050 180472159 2.020000e-29 141.0
18 TraesCS5A01G006300 chr5D 79.710 138 19 5 3299 3436 66745073 66744945 2.060000e-14 91.6
19 TraesCS5A01G006300 chr5B 83.401 1476 171 38 1416 2868 6659698 6661122 0.000000e+00 1301.0
20 TraesCS5A01G006300 chr5B 84.648 1166 128 29 1416 2575 24374692 24375812 0.000000e+00 1114.0
21 TraesCS5A01G006300 chr5B 83.962 1166 136 29 1416 2575 24331412 24332532 0.000000e+00 1070.0
22 TraesCS5A01G006300 chr5B 83.157 1039 119 33 1546 2575 24357254 24358245 0.000000e+00 898.0
23 TraesCS5A01G006300 chr5B 87.611 678 65 10 1416 2084 24314152 24314819 0.000000e+00 769.0
24 TraesCS5A01G006300 chr5B 90.530 528 45 3 1416 1940 31117644 31117119 0.000000e+00 693.0
25 TraesCS5A01G006300 chr5B 90.144 487 35 4 735 1209 6659034 6659519 5.920000e-174 621.0
26 TraesCS5A01G006300 chr5B 92.239 335 26 0 4059 4393 24333593 24333927 4.880000e-130 475.0
27 TraesCS5A01G006300 chr5B 92.239 335 26 0 4059 4393 24376532 24376866 4.880000e-130 475.0
28 TraesCS5A01G006300 chr5B 91.642 335 28 0 4059 4393 24316333 24316667 1.060000e-126 464.0
29 TraesCS5A01G006300 chr5B 91.040 346 23 6 4059 4397 31114385 31114041 1.370000e-125 460.0
30 TraesCS5A01G006300 chr5B 91.343 335 29 0 4059 4393 24298798 24299132 4.910000e-125 459.0
31 TraesCS5A01G006300 chr5B 91.343 335 29 0 4059 4393 24359305 24359639 4.910000e-125 459.0
32 TraesCS5A01G006300 chr5B 84.698 464 62 6 2115 2575 24314815 24315272 6.360000e-124 455.0
33 TraesCS5A01G006300 chr5B 87.151 358 37 5 4575 4926 40556262 40555908 1.090000e-106 398.0
34 TraesCS5A01G006300 chr5B 85.904 376 45 5 2425 2799 31115174 31114806 1.410000e-105 394.0
35 TraesCS5A01G006300 chr5B 88.667 300 25 5 911 1209 31118167 31117876 1.840000e-94 357.0
36 TraesCS5A01G006300 chr5B 86.195 297 33 3 5092 5381 40531783 40531488 1.130000e-81 315.0
37 TraesCS5A01G006300 chr5B 85.489 317 26 10 911 1209 24313669 24313983 4.050000e-81 313.0
38 TraesCS5A01G006300 chr5B 84.071 339 39 6 2588 2919 24358528 24358858 4.050000e-81 313.0
39 TraesCS5A01G006300 chr5B 83.824 340 39 6 2588 2919 24332814 24333145 5.240000e-80 309.0
40 TraesCS5A01G006300 chr5B 83.776 339 40 6 2588 2919 24315555 24315885 1.880000e-79 307.0
41 TraesCS5A01G006300 chr5B 87.018 285 13 9 481 743 31118666 31118384 3.150000e-77 300.0
42 TraesCS5A01G006300 chr5B 84.762 315 28 10 913 1209 24330931 24331243 1.130000e-76 298.0
43 TraesCS5A01G006300 chr5B 84.444 315 29 10 913 1209 24374211 24374523 5.270000e-75 292.0
44 TraesCS5A01G006300 chr5B 84.946 279 36 6 3016 3291 303229374 303229099 1.480000e-70 278.0
45 TraesCS5A01G006300 chr5B 90.110 182 15 3 79 260 24329601 24329779 3.240000e-57 233.0
46 TraesCS5A01G006300 chr5B 90.110 182 15 3 79 260 24356960 24357138 3.240000e-57 233.0
47 TraesCS5A01G006300 chr5B 90.110 182 15 3 79 260 24372877 24373055 3.240000e-57 233.0
48 TraesCS5A01G006300 chr5B 92.500 160 11 1 755 914 24313485 24313643 1.510000e-55 228.0
49 TraesCS5A01G006300 chr5B 89.560 182 16 3 79 260 24390206 24390384 1.510000e-55 228.0
50 TraesCS5A01G006300 chr5B 91.975 162 12 1 753 914 24330743 24330903 5.420000e-55 226.0
51 TraesCS5A01G006300 chr5B 93.333 150 9 1 753 902 24374018 24374166 2.520000e-53 220.0
52 TraesCS5A01G006300 chr5B 87.912 182 15 5 79 260 24312409 24312583 1.960000e-49 207.0
53 TraesCS5A01G006300 chr5B 93.651 126 6 2 480 605 24330619 24330742 2.560000e-43 187.0
54 TraesCS5A01G006300 chr5B 93.651 126 7 1 480 605 24373893 24374017 2.560000e-43 187.0
55 TraesCS5A01G006300 chr5B 88.742 151 17 0 3882 4032 581171445 581171295 9.210000e-43 185.0
56 TraesCS5A01G006300 chr5B 95.098 102 5 0 504 605 24313381 24313482 1.550000e-35 161.0
57 TraesCS5A01G006300 chr5B 90.291 103 10 0 3742 3844 581171618 581171516 9.400000e-28 135.0
58 TraesCS5A01G006300 chr5B 80.247 162 11 7 759 914 31118336 31118190 9.540000e-18 102.0
59 TraesCS5A01G006300 chr5B 100.000 32 0 0 3670 3701 334881147 334881116 5.820000e-05 60.2
60 TraesCS5A01G006300 chr1A 87.601 371 38 3 5020 5383 223454730 223454361 1.790000e-114 424.0
61 TraesCS5A01G006300 chr1A 87.117 326 37 3 4602 4926 223455050 223454729 1.100000e-96 364.0
62 TraesCS5A01G006300 chr1A 78.498 293 47 14 2036 2321 63811876 63811593 1.540000e-40 178.0
63 TraesCS5A01G006300 chr1A 94.000 100 6 0 4923 5022 464800318 464800417 9.340000e-33 152.0
64 TraesCS5A01G006300 chr1A 87.156 109 12 2 3742 3850 394236519 394236625 7.320000e-24 122.0
65 TraesCS5A01G006300 chr1A 75.088 285 41 14 3303 3569 191546253 191546525 7.370000e-19 106.0
66 TraesCS5A01G006300 chr1D 87.399 373 37 5 5020 5383 220287462 220287091 2.320000e-113 420.0
67 TraesCS5A01G006300 chr1D 83.178 214 30 5 3848 4056 313794226 313794438 1.980000e-44 191.0
68 TraesCS5A01G006300 chr1D 86.364 110 11 4 3742 3850 62690804 62690698 3.410000e-22 117.0
69 TraesCS5A01G006300 chr1D 89.474 76 8 0 2942 3017 189529888 189529813 4.440000e-16 97.1
70 TraesCS5A01G006300 chr2A 86.702 376 42 6 4547 4921 459924372 459924004 1.400000e-110 411.0
71 TraesCS5A01G006300 chr2A 86.441 177 16 7 3885 4057 4493869 4493697 2.560000e-43 187.0
72 TraesCS5A01G006300 chr2A 85.876 177 17 7 3885 4057 4553091 4552919 1.190000e-41 182.0
73 TraesCS5A01G006300 chr2A 84.821 112 14 3 3742 3850 766963057 766963168 5.700000e-20 110.0
74 TraesCS5A01G006300 chr1B 86.721 369 45 2 5018 5383 112346963 112347330 1.810000e-109 407.0
75 TraesCS5A01G006300 chr1B 86.239 109 12 2 3742 3850 423933337 423933442 1.230000e-21 115.0
76 TraesCS5A01G006300 chr3B 86.327 373 44 3 4554 4926 151311699 151311334 3.020000e-107 399.0
77 TraesCS5A01G006300 chr3B 78.041 296 56 7 2035 2326 154190329 154190619 1.540000e-40 178.0
78 TraesCS5A01G006300 chr3B 87.619 105 11 2 3954 4057 580785625 580785522 2.630000e-23 121.0
79 TraesCS5A01G006300 chr4D 86.691 278 31 6 3016 3291 421335487 421335214 2.440000e-78 303.0
80 TraesCS5A01G006300 chr4D 92.381 105 7 1 4918 5021 498396840 498396736 1.210000e-31 148.0
81 TraesCS5A01G006300 chr4D 95.000 40 2 0 3670 3709 325546680 325546641 4.500000e-06 63.9
82 TraesCS5A01G006300 chr2D 86.525 282 27 9 3016 3293 95777548 95777822 3.150000e-77 300.0
83 TraesCS5A01G006300 chr2D 84.615 143 13 5 3708 3842 590031332 590031473 3.380000e-27 134.0
84 TraesCS5A01G006300 chr6A 86.331 278 33 5 3016 3291 189538505 189538779 1.130000e-76 298.0
85 TraesCS5A01G006300 chr6A 91.509 106 8 1 4924 5029 37459177 37459073 1.560000e-30 145.0
86 TraesCS5A01G006300 chr6A 90.741 108 8 2 4921 5028 611563176 611563281 5.620000e-30 143.0
87 TraesCS5A01G006300 chr6A 91.304 46 2 2 3625 3669 1884221 1884177 1.620000e-05 62.1
88 TraesCS5A01G006300 chr3D 85.971 278 37 2 3016 3292 369413433 369413709 4.080000e-76 296.0
89 TraesCS5A01G006300 chr3D 80.195 308 47 11 3749 4051 455692500 455692202 9.080000e-53 219.0
90 TraesCS5A01G006300 chr7D 86.022 279 30 9 3016 3291 517004030 517003758 1.900000e-74 291.0
91 TraesCS5A01G006300 chr7D 83.732 209 27 6 3854 4056 199624718 199624511 1.980000e-44 191.0
92 TraesCS5A01G006300 chr7D 86.885 122 14 2 4922 5041 548620975 548620854 9.400000e-28 135.0
93 TraesCS5A01G006300 chr7D 78.014 141 21 4 3300 3440 101775608 101775478 4.470000e-11 80.5
94 TraesCS5A01G006300 chr7D 94.444 36 2 0 1326 1361 29997312 29997277 7.530000e-04 56.5
95 TraesCS5A01G006300 chr4B 85.965 171 20 3 3886 4055 119354957 119354790 4.280000e-41 180.0
96 TraesCS5A01G006300 chr4B 94.000 100 6 0 4922 5021 570801839 570801938 9.340000e-33 152.0
97 TraesCS5A01G006300 chrUn 85.311 177 18 7 3885 4057 176201570 176201742 5.540000e-40 176.0
98 TraesCS5A01G006300 chr7B 87.129 101 13 0 3746 3846 617827328 617827428 1.230000e-21 115.0
99 TraesCS5A01G006300 chr7B 89.583 48 2 3 3623 3668 66779066 66779020 2.090000e-04 58.4
100 TraesCS5A01G006300 chr3A 86.667 105 13 1 3747 3850 713982124 713982228 1.230000e-21 115.0
101 TraesCS5A01G006300 chr6B 100.000 28 0 0 3456 3483 621272937 621272964 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G006300 chr5A 3554694 3560076 5382 False 9941.000000 9941 100.000000 1 5383 1 chr5A.!!$F1 5382
1 TraesCS5A01G006300 chr5A 3698439 3701451 3012 False 804.666667 1838 83.651333 471 4393 3 chr5A.!!$F4 3922
2 TraesCS5A01G006300 chr5D 5152962 5156735 3773 True 1629.333333 2296 93.402667 2007 5383 3 chr5D.!!$R5 3376
3 TraesCS5A01G006300 chr5D 5163395 5164699 1304 True 1609.000000 1609 89.398000 648 1930 1 chr5D.!!$R1 1282
4 TraesCS5A01G006300 chr5D 5116915 5119249 2334 True 551.666667 760 85.352000 737 4396 3 chr5D.!!$R4 3659
5 TraesCS5A01G006300 chr5B 6659034 6661122 2088 False 961.000000 1301 86.772500 735 2868 2 chr5B.!!$F3 2133
6 TraesCS5A01G006300 chr5B 24356960 24359639 2679 False 475.750000 898 87.170250 79 4393 4 chr5B.!!$F6 4314
7 TraesCS5A01G006300 chr5B 24372877 24376866 3989 False 420.166667 1114 89.737500 79 4393 6 chr5B.!!$F7 4314
8 TraesCS5A01G006300 chr5B 24329601 24333927 4326 False 399.714286 1070 88.646143 79 4393 7 chr5B.!!$F5 4314
9 TraesCS5A01G006300 chr5B 31114041 31118666 4625 True 384.333333 693 87.234333 481 4397 6 chr5B.!!$R5 3916
10 TraesCS5A01G006300 chr5B 24312409 24316667 4258 False 363.000000 769 88.590750 79 4393 8 chr5B.!!$F4 4314
11 TraesCS5A01G006300 chr1A 223454361 223455050 689 True 394.000000 424 87.359000 4602 5383 2 chr1A.!!$R2 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.033228 CGAGACTGAGCCATCCCATC 59.967 60.0 0.0 0.0 0.00 3.51 F
53 54 0.033228 GAGACTGAGCCATCCCATCG 59.967 60.0 0.0 0.0 0.00 3.84 F
424 589 0.107831 TTGGTTCACTTGGGAGTCGG 59.892 55.0 0.0 0.0 32.54 4.79 F
427 592 0.391597 GTTCACTTGGGAGTCGGTGA 59.608 55.0 0.0 0.0 37.00 4.02 F
1792 2654 0.678395 AGCTGACTCCAGATATGCCG 59.322 55.0 0.0 0.0 43.02 5.69 F
3087 6149 0.393537 CAAGCCACCATCACTCTCCC 60.394 60.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1836 0.895559 GTTGGAGGGGTGAAAGCTGG 60.896 60.000 0.00 0.0 0.00 4.85 R
1837 2699 1.220749 GTGATGCAGGGCCTCGTAA 59.779 57.895 0.95 0.0 0.00 3.18 R
2016 2920 2.239400 AGGCCTAGAAACAAAACTGGC 58.761 47.619 1.29 0.0 38.28 4.85 R
2112 3059 4.082949 CGAACCAAATAACACCTCTTTCCC 60.083 45.833 0.00 0.0 0.00 3.97 R
3274 6336 1.202582 CCCATACTTCCTCTATCCGCG 59.797 57.143 0.00 0.0 0.00 6.46 R
5001 8271 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.795175 AATATCACGTGCCGTAGAGG 57.205 50.000 11.67 0.00 38.32 3.69
22 23 1.977056 ATATCACGTGCCGTAGAGGA 58.023 50.000 11.67 0.00 45.00 3.71
23 24 1.019673 TATCACGTGCCGTAGAGGAC 58.980 55.000 11.67 0.00 45.00 3.85
25 26 2.035312 ACGTGCCGTAGAGGACCT 59.965 61.111 0.00 0.00 45.00 3.85
26 27 2.045131 ACGTGCCGTAGAGGACCTC 61.045 63.158 14.15 14.15 45.00 3.85
38 39 1.842052 AGGACCTCCTTTCTCGAGAC 58.158 55.000 16.36 0.22 46.09 3.36
39 40 1.356398 AGGACCTCCTTTCTCGAGACT 59.644 52.381 16.36 2.34 46.09 3.24
40 41 1.474879 GGACCTCCTTTCTCGAGACTG 59.525 57.143 16.36 10.64 0.00 3.51
41 42 2.438411 GACCTCCTTTCTCGAGACTGA 58.562 52.381 16.36 10.80 0.00 3.41
42 43 2.422127 GACCTCCTTTCTCGAGACTGAG 59.578 54.545 16.36 19.00 37.33 3.35
43 44 1.134175 CCTCCTTTCTCGAGACTGAGC 59.866 57.143 16.36 0.00 35.90 4.26
44 45 1.134175 CTCCTTTCTCGAGACTGAGCC 59.866 57.143 16.36 0.00 35.90 4.70
45 46 0.891373 CCTTTCTCGAGACTGAGCCA 59.109 55.000 16.36 0.00 35.90 4.75
46 47 1.480137 CCTTTCTCGAGACTGAGCCAT 59.520 52.381 16.36 0.00 35.90 4.40
47 48 2.481104 CCTTTCTCGAGACTGAGCCATC 60.481 54.545 16.36 0.00 35.90 3.51
48 49 1.107114 TTCTCGAGACTGAGCCATCC 58.893 55.000 16.36 0.00 35.90 3.51
49 50 0.753479 TCTCGAGACTGAGCCATCCC 60.753 60.000 12.08 0.00 35.90 3.85
50 51 1.000359 TCGAGACTGAGCCATCCCA 60.000 57.895 0.00 0.00 0.00 4.37
51 52 0.397675 TCGAGACTGAGCCATCCCAT 60.398 55.000 0.00 0.00 0.00 4.00
52 53 0.033228 CGAGACTGAGCCATCCCATC 59.967 60.000 0.00 0.00 0.00 3.51
53 54 0.033228 GAGACTGAGCCATCCCATCG 59.967 60.000 0.00 0.00 0.00 3.84
54 55 0.397675 AGACTGAGCCATCCCATCGA 60.398 55.000 0.00 0.00 0.00 3.59
55 56 0.249657 GACTGAGCCATCCCATCGAC 60.250 60.000 0.00 0.00 0.00 4.20
56 57 1.300465 CTGAGCCATCCCATCGACG 60.300 63.158 0.00 0.00 0.00 5.12
57 58 2.663188 GAGCCATCCCATCGACGC 60.663 66.667 0.00 0.00 0.00 5.19
58 59 4.241555 AGCCATCCCATCGACGCC 62.242 66.667 0.00 0.00 0.00 5.68
59 60 4.241555 GCCATCCCATCGACGCCT 62.242 66.667 0.00 0.00 0.00 5.52
60 61 2.280389 CCATCCCATCGACGCCTG 60.280 66.667 0.00 0.00 0.00 4.85
61 62 2.796193 CCATCCCATCGACGCCTGA 61.796 63.158 0.00 0.00 0.00 3.86
62 63 1.368950 CATCCCATCGACGCCTGAT 59.631 57.895 0.00 0.00 0.00 2.90
63 64 0.603065 CATCCCATCGACGCCTGATA 59.397 55.000 0.00 0.00 0.00 2.15
64 65 0.891373 ATCCCATCGACGCCTGATAG 59.109 55.000 0.00 0.00 0.00 2.08
65 66 1.373497 CCCATCGACGCCTGATAGC 60.373 63.158 0.00 0.00 0.00 2.97
74 75 2.979130 GCCTGATAGCGACTTGGAC 58.021 57.895 0.00 0.00 0.00 4.02
75 76 0.175760 GCCTGATAGCGACTTGGACA 59.824 55.000 0.00 0.00 0.00 4.02
76 77 1.405526 GCCTGATAGCGACTTGGACAA 60.406 52.381 0.00 0.00 0.00 3.18
77 78 2.271800 CCTGATAGCGACTTGGACAAC 58.728 52.381 0.00 0.00 0.00 3.32
84 85 1.226746 CGACTTGGACAACAGGGAAC 58.773 55.000 0.00 0.00 0.00 3.62
85 86 1.474320 CGACTTGGACAACAGGGAACA 60.474 52.381 0.00 0.00 0.00 3.18
99 100 7.926018 ACAACAGGGAACAATCTTTATTTTCAC 59.074 33.333 0.00 0.00 0.00 3.18
113 114 9.923143 TCTTTATTTTCACTCTCGTTTCTATCA 57.077 29.630 0.00 0.00 0.00 2.15
163 164 7.504924 TTTCATCCGTTTTTAAGAGACACAT 57.495 32.000 0.00 0.00 0.00 3.21
260 261 6.345096 TGATCATTTTCTGAAAAAGGGGAC 57.655 37.500 18.43 9.41 37.76 4.46
272 309 2.745037 GGGGACCGTGCTTGTACA 59.255 61.111 0.00 0.00 40.86 2.90
283 320 4.909305 CCGTGCTTGTACATAAAACACTTG 59.091 41.667 0.00 0.00 0.00 3.16
287 324 4.805219 CTTGTACATAAAACACTTGGGCC 58.195 43.478 0.00 0.00 0.00 5.80
303 340 2.029073 CCCGCGCTATGTACCTGG 59.971 66.667 5.56 0.00 0.00 4.45
306 343 1.143183 CGCGCTATGTACCTGGGTT 59.857 57.895 5.56 0.00 0.00 4.11
322 359 1.517210 GGTTTGGGCCGCGTTTTCTA 61.517 55.000 4.92 0.00 0.00 2.10
324 361 1.738908 GTTTGGGCCGCGTTTTCTATA 59.261 47.619 4.92 0.00 0.00 1.31
329 366 1.504647 GCCGCGTTTTCTATAGGCCC 61.505 60.000 4.92 0.00 38.72 5.80
330 367 0.179067 CCGCGTTTTCTATAGGCCCA 60.179 55.000 4.92 0.00 0.00 5.36
331 368 0.935196 CGCGTTTTCTATAGGCCCAC 59.065 55.000 0.00 0.00 0.00 4.61
332 369 1.741055 CGCGTTTTCTATAGGCCCACA 60.741 52.381 0.00 0.00 0.00 4.17
333 370 2.572290 GCGTTTTCTATAGGCCCACAT 58.428 47.619 0.00 0.00 0.00 3.21
335 372 3.003378 GCGTTTTCTATAGGCCCACATTC 59.997 47.826 0.00 0.00 0.00 2.67
336 373 3.247648 CGTTTTCTATAGGCCCACATTCG 59.752 47.826 0.00 0.00 0.00 3.34
337 374 3.485463 TTTCTATAGGCCCACATTCGG 57.515 47.619 0.00 0.00 0.00 4.30
394 483 2.863988 CCACCCCCACCCTTTCCT 60.864 66.667 0.00 0.00 0.00 3.36
395 484 2.440599 CACCCCCACCCTTTCCTG 59.559 66.667 0.00 0.00 0.00 3.86
397 486 4.740822 CCCCCACCCTTTCCTGCG 62.741 72.222 0.00 0.00 0.00 5.18
399 488 4.659172 CCCACCCTTTCCTGCGCA 62.659 66.667 10.98 10.98 0.00 6.09
400 489 3.058160 CCACCCTTTCCTGCGCAG 61.058 66.667 30.52 30.52 0.00 5.18
401 490 2.032528 CACCCTTTCCTGCGCAGA 59.967 61.111 38.06 21.04 0.00 4.26
403 492 2.348998 CCCTTTCCTGCGCAGACT 59.651 61.111 38.06 0.00 0.00 3.24
404 493 2.037136 CCCTTTCCTGCGCAGACTG 61.037 63.158 38.06 21.63 0.00 3.51
405 494 1.302033 CCTTTCCTGCGCAGACTGT 60.302 57.895 38.06 0.00 0.00 3.55
406 495 0.886490 CCTTTCCTGCGCAGACTGTT 60.886 55.000 38.06 0.00 0.00 3.16
408 497 1.165907 TTTCCTGCGCAGACTGTTGG 61.166 55.000 38.06 20.76 0.00 3.77
409 498 2.281070 CCTGCGCAGACTGTTGGT 60.281 61.111 38.06 0.00 0.00 3.67
410 499 1.893808 CCTGCGCAGACTGTTGGTT 60.894 57.895 38.06 0.00 0.00 3.67
415 504 1.299541 CGCAGACTGTTGGTTCACTT 58.700 50.000 3.99 0.00 0.00 3.16
421 586 1.564348 ACTGTTGGTTCACTTGGGAGT 59.436 47.619 0.00 0.00 36.25 3.85
422 587 2.222027 CTGTTGGTTCACTTGGGAGTC 58.778 52.381 0.00 0.00 32.54 3.36
424 589 0.107831 TTGGTTCACTTGGGAGTCGG 59.892 55.000 0.00 0.00 32.54 4.79
427 592 0.391597 GTTCACTTGGGAGTCGGTGA 59.608 55.000 0.00 0.00 37.00 4.02
431 596 1.079543 CTTGGGAGTCGGTGAGCAG 60.080 63.158 0.00 0.00 0.00 4.24
434 599 2.680352 GGAGTCGGTGAGCAGGGA 60.680 66.667 0.00 0.00 0.00 4.20
437 602 4.459089 GTCGGTGAGCAGGGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
443 608 4.828925 GAGCAGGGAGGCGACAGC 62.829 72.222 0.00 0.00 44.18 4.40
556 1176 7.712639 CACATTGCAGACTCCAAATAGTACTAT 59.287 37.037 9.71 9.71 0.00 2.12
605 1225 1.729586 ACTACCTCAGCCTCACCAAA 58.270 50.000 0.00 0.00 0.00 3.28
606 1226 2.269940 ACTACCTCAGCCTCACCAAAT 58.730 47.619 0.00 0.00 0.00 2.32
607 1227 2.026822 ACTACCTCAGCCTCACCAAATG 60.027 50.000 0.00 0.00 0.00 2.32
608 1228 1.067295 ACCTCAGCCTCACCAAATGA 58.933 50.000 0.00 0.00 35.45 2.57
609 1229 1.271597 ACCTCAGCCTCACCAAATGAC 60.272 52.381 0.00 0.00 32.37 3.06
665 1301 3.056313 GCAGCGGCACAATCTTCCC 62.056 63.158 3.18 0.00 40.72 3.97
699 1348 3.520862 CATGGCGGCATGTGGACC 61.521 66.667 36.25 3.32 0.00 4.46
717 1366 1.157870 CCGACACACCACAAGTCCAC 61.158 60.000 0.00 0.00 0.00 4.02
748 1437 4.731313 TCTCATCATAGAGAGGCTGGTA 57.269 45.455 0.00 0.00 39.62 3.25
845 1542 3.525537 GGCACCTATATCCATCATCACG 58.474 50.000 0.00 0.00 0.00 4.35
968 1721 5.591472 TCAAGCATAATTTCTCCATCACAGG 59.409 40.000 0.00 0.00 0.00 4.00
975 1728 1.226802 CTCCATCACAGGACTCGCG 60.227 63.158 0.00 0.00 33.19 5.87
1246 2035 9.673454 ACATACATACATACATACACAAGTACG 57.327 33.333 0.00 0.00 31.96 3.67
1247 2036 9.673454 CATACATACATACATACACAAGTACGT 57.327 33.333 0.00 0.00 31.96 3.57
1250 2039 8.131100 ACATACATACATACACAAGTACGTACC 58.869 37.037 21.80 4.66 32.41 3.34
1251 2040 6.764308 ACATACATACACAAGTACGTACCT 57.236 37.500 21.80 6.55 32.41 3.08
1252 2041 7.864108 ACATACATACACAAGTACGTACCTA 57.136 36.000 21.80 4.87 32.41 3.08
1253 2042 8.455903 ACATACATACACAAGTACGTACCTAT 57.544 34.615 21.80 6.28 32.41 2.57
1254 2043 8.347771 ACATACATACACAAGTACGTACCTATG 58.652 37.037 21.80 19.19 32.41 2.23
1255 2044 6.764308 ACATACACAAGTACGTACCTATGT 57.236 37.500 21.80 22.14 31.96 2.29
1486 2340 3.368323 GCAAATTAACACTCCCCATGGTG 60.368 47.826 11.73 4.64 39.13 4.17
1669 2524 6.701841 TCGATGAAATATGTAAGTTCTGGCTC 59.298 38.462 0.00 0.00 0.00 4.70
1685 2547 3.843027 CTGGCTCATTATATCCTCCCACT 59.157 47.826 0.00 0.00 0.00 4.00
1688 2550 4.564406 GGCTCATTATATCCTCCCACTGTG 60.564 50.000 0.00 0.00 0.00 3.66
1704 2566 4.520111 CCACTGTGTCCATCATCTCAAAAA 59.480 41.667 7.08 0.00 0.00 1.94
1792 2654 0.678395 AGCTGACTCCAGATATGCCG 59.322 55.000 0.00 0.00 43.02 5.69
1888 2750 5.743467 TGTACGTCTGCTTGTTACATTTTG 58.257 37.500 0.00 0.00 0.00 2.44
1926 2791 7.962995 TCTCTTCATTACACTGTCTATTCCT 57.037 36.000 0.00 0.00 0.00 3.36
1996 2900 4.199432 AGCTCGATGAATTTGTCAGACT 57.801 40.909 1.31 0.00 40.43 3.24
2000 2904 5.400066 TCGATGAATTTGTCAGACTACCA 57.600 39.130 1.31 0.00 40.43 3.25
2001 2905 5.977635 TCGATGAATTTGTCAGACTACCAT 58.022 37.500 1.31 0.00 40.43 3.55
2002 2906 7.107639 TCGATGAATTTGTCAGACTACCATA 57.892 36.000 1.31 0.00 40.43 2.74
2003 2907 7.552459 TCGATGAATTTGTCAGACTACCATAA 58.448 34.615 1.31 0.00 40.43 1.90
2004 2908 7.491372 TCGATGAATTTGTCAGACTACCATAAC 59.509 37.037 1.31 0.00 40.43 1.89
2005 2909 7.492669 CGATGAATTTGTCAGACTACCATAACT 59.507 37.037 1.31 0.00 40.43 2.24
2009 2913 6.620877 TTTGTCAGACTACCATAACTCCAT 57.379 37.500 1.31 0.00 0.00 3.41
2016 2920 8.642432 TCAGACTACCATAACTCCATAATGAAG 58.358 37.037 0.00 0.00 0.00 3.02
2093 3040 9.730705 AGAAAAATCATAGAAAGTGAGATGACA 57.269 29.630 0.00 0.00 31.41 3.58
2096 3043 7.493743 AATCATAGAAAGTGAGATGACATGC 57.506 36.000 0.00 0.00 31.41 4.06
2097 3044 5.981174 TCATAGAAAGTGAGATGACATGCA 58.019 37.500 0.00 0.00 0.00 3.96
2098 3045 6.589135 TCATAGAAAGTGAGATGACATGCAT 58.411 36.000 0.00 0.00 40.77 3.96
2113 3060 6.470278 TGACATGCATCTCAAATCCTATAGG 58.530 40.000 13.07 13.07 0.00 2.57
2114 3061 5.813383 ACATGCATCTCAAATCCTATAGGG 58.187 41.667 18.97 2.67 35.41 3.53
2135 3082 4.082949 GGGAAAGAGGTGTTATTTGGTTCG 60.083 45.833 0.00 0.00 0.00 3.95
2256 3205 3.062042 CTGCAAATCAAAGGGCTTCAAC 58.938 45.455 0.00 0.00 0.00 3.18
2283 3232 9.674068 GGAGTTTTTCTTACAAGATTCCTATCT 57.326 33.333 0.00 0.00 43.01 1.98
2383 3332 6.126911 TGGTTGCATATACAGTTGAGTCCATA 60.127 38.462 0.00 0.00 0.00 2.74
2507 4943 3.439129 GCCCATATTGACGCCTAATTACC 59.561 47.826 0.00 0.00 0.00 2.85
2625 5334 6.756221 TCCCTTCGCTATAGTTTTCTTATCC 58.244 40.000 0.84 0.00 0.00 2.59
2692 5404 7.658525 TGGTAAATGCATTGAAGACCAATAT 57.341 32.000 23.28 5.50 43.27 1.28
2799 5512 2.819019 TGTCTACATGCAACAATGGTGG 59.181 45.455 0.00 0.00 31.46 4.61
2806 5519 3.431673 TGCAACAATGGTGGTCTATCA 57.568 42.857 0.00 0.00 0.00 2.15
2808 5521 3.244875 TGCAACAATGGTGGTCTATCAGT 60.245 43.478 0.00 0.00 0.00 3.41
2847 5561 6.835174 AGATGCAATGTTCTATCAGGTACAT 58.165 36.000 0.00 0.00 32.89 2.29
3087 6149 0.393537 CAAGCCACCATCACTCTCCC 60.394 60.000 0.00 0.00 0.00 4.30
3088 6150 1.566298 AAGCCACCATCACTCTCCCC 61.566 60.000 0.00 0.00 0.00 4.81
3098 6160 7.202186 CCACCATCACTCTCCCCTTTAATTATA 60.202 40.741 0.00 0.00 0.00 0.98
3106 6168 7.098845 TCTCCCCTTTAATTATAACATCCCC 57.901 40.000 0.00 0.00 0.00 4.81
3121 6183 3.954258 ACATCCCCAATAAGCTTAAGTGC 59.046 43.478 10.85 0.00 0.00 4.40
3122 6184 3.730215 TCCCCAATAAGCTTAAGTGCA 57.270 42.857 10.85 0.00 34.99 4.57
3131 6193 7.384660 CCAATAAGCTTAAGTGCATGTTGAAAA 59.615 33.333 10.85 0.00 35.73 2.29
3186 6248 4.998788 TGATTACCGTGTGATGAGAGAAG 58.001 43.478 0.00 0.00 0.00 2.85
3231 6293 5.189736 AGTGCATTGGGAAGATAGAAGTACA 59.810 40.000 0.00 0.00 0.00 2.90
3234 6296 6.116126 GCATTGGGAAGATAGAAGTACACTT 58.884 40.000 0.00 0.00 39.23 3.16
3274 6336 8.996988 TTTGAATGACAAACGTACACTTATTC 57.003 30.769 0.00 0.00 42.57 1.75
3280 6342 2.857592 ACGTACACTTATTCGCGGAT 57.142 45.000 4.69 4.69 0.00 4.18
3281 6343 3.969117 ACGTACACTTATTCGCGGATA 57.031 42.857 6.13 3.97 0.00 2.59
3286 6348 3.220110 ACACTTATTCGCGGATAGAGGA 58.780 45.455 7.27 0.00 0.00 3.71
3293 6355 2.160205 TCGCGGATAGAGGAAGTATGG 58.840 52.381 6.13 0.00 0.00 2.74
3362 6425 3.569277 CCACACATGACACCTCATCAAAA 59.431 43.478 0.00 0.00 34.65 2.44
3363 6426 4.539870 CACACATGACACCTCATCAAAAC 58.460 43.478 0.00 0.00 34.65 2.43
3576 6774 7.970102 TGCGGGGTATTCTCTAGTTTTTATAT 58.030 34.615 0.00 0.00 0.00 0.86
3577 6775 8.434392 TGCGGGGTATTCTCTAGTTTTTATATT 58.566 33.333 0.00 0.00 0.00 1.28
3578 6776 9.281371 GCGGGGTATTCTCTAGTTTTTATATTT 57.719 33.333 0.00 0.00 0.00 1.40
3636 6836 6.831868 GCTTTATGGATTTTTAGTACTCCCCA 59.168 38.462 0.00 0.00 0.00 4.96
3638 6838 4.230745 TGGATTTTTAGTACTCCCCAGC 57.769 45.455 0.00 0.00 0.00 4.85
3645 6845 0.104934 AGTACTCCCCAGCCCCATAG 60.105 60.000 0.00 0.00 0.00 2.23
3677 6877 5.560953 GCATTTTTGACACTAGAAACGCTCT 60.561 40.000 0.00 0.00 38.28 4.09
3696 6896 6.051717 CGCTCTTATATTATTGGATGGAGGG 58.948 44.000 0.00 0.00 0.00 4.30
3715 6915 7.691213 TGGAGGGAGTACTAGATTAGATAGTG 58.309 42.308 0.00 0.00 35.20 2.74
3738 6938 0.600255 CGTTTTGGTGACCGAGCTCT 60.600 55.000 12.85 0.00 0.00 4.09
3740 6940 2.067013 GTTTTGGTGACCGAGCTCTAC 58.933 52.381 12.85 5.53 0.00 2.59
3755 6955 9.391006 ACCGAGCTCTACAAATATTCAAAATTA 57.609 29.630 12.85 0.00 0.00 1.40
3839 7039 8.877864 ATATGTGTGTAAAAATTCAGGAGGAA 57.122 30.769 0.00 0.00 40.46 3.36
3843 7043 8.573035 TGTGTGTAAAAATTCAGGAGGAAATAC 58.427 33.333 0.00 0.00 39.39 1.89
3907 7154 3.451141 TTTGCACAACCCTCATTTCAC 57.549 42.857 0.00 0.00 0.00 3.18
3966 7213 9.671279 CATTATGCCTCCATGTATATCTGTAAA 57.329 33.333 0.00 0.00 32.85 2.01
4048 7306 1.331214 TGGAGCTTGGCCTCAAAAAG 58.669 50.000 3.32 0.00 33.47 2.27
4269 7537 3.429547 CGTCAGTCCATTCTACTTCTGGG 60.430 52.174 0.00 0.00 0.00 4.45
4359 7627 8.632679 GGAAGTTGATAAGCCAATCATTTCATA 58.367 33.333 16.74 0.00 35.84 2.15
4414 7682 3.553715 CGCTGATAGCAATAAGGAGCTCA 60.554 47.826 17.19 0.00 42.58 4.26
4442 7710 2.094762 ACTAGCAATGTTCCGGTGAC 57.905 50.000 0.00 2.16 0.00 3.67
4466 7734 7.601856 ACGTGTTTTCCATGATACAATGATTT 58.398 30.769 0.00 0.00 34.01 2.17
4469 7737 9.294030 GTGTTTTCCATGATACAATGATTTCTC 57.706 33.333 0.00 0.00 0.00 2.87
4476 7744 7.854422 CCATGATACAATGATTTCTCTGTTTCG 59.146 37.037 0.00 0.00 0.00 3.46
4481 7749 5.239306 ACAATGATTTCTCTGTTTCGAGCAA 59.761 36.000 0.00 0.00 0.00 3.91
4534 7803 1.501582 AAGAGAGGATGGGTGCCTAC 58.498 55.000 0.00 0.00 35.44 3.18
4536 7805 1.749334 GAGAGGATGGGTGCCTACGG 61.749 65.000 0.00 0.00 35.44 4.02
4650 7919 7.894376 TGGTTCCGAAATAGTAAAACTACTG 57.106 36.000 0.00 0.00 32.84 2.74
4736 8005 3.743396 GGCAGAGGCGATTGTATAAAGAG 59.257 47.826 0.00 0.00 42.47 2.85
4768 8037 6.239217 TGCTTATTTCCTTCTGATCAGCTA 57.761 37.500 18.36 7.46 0.00 3.32
4790 8059 8.576442 AGCTAAGCTACACATTAAAACAAACAT 58.424 29.630 0.00 0.00 36.99 2.71
4791 8060 8.850452 GCTAAGCTACACATTAAAACAAACATC 58.150 33.333 0.00 0.00 0.00 3.06
4792 8061 7.851822 AAGCTACACATTAAAACAAACATCG 57.148 32.000 0.00 0.00 0.00 3.84
4795 8064 7.378461 AGCTACACATTAAAACAAACATCGTTG 59.622 33.333 0.00 0.00 34.52 4.10
4912 8182 7.330900 ACTAAATGAATCTCCATTGAAGCAG 57.669 36.000 0.00 0.00 36.90 4.24
4930 8200 4.216708 AGCAGATGGTACTAAGTACTCCC 58.783 47.826 0.00 0.00 38.85 4.30
4933 8203 5.128991 GCAGATGGTACTAAGTACTCCCTTT 59.871 44.000 0.00 0.00 38.85 3.11
4935 8205 5.661759 AGATGGTACTAAGTACTCCCTTTGG 59.338 44.000 0.00 0.00 38.85 3.28
4937 8207 3.429960 GGTACTAAGTACTCCCTTTGGCG 60.430 52.174 0.00 0.00 38.85 5.69
4938 8208 1.066358 ACTAAGTACTCCCTTTGGCGC 60.066 52.381 0.00 0.00 0.00 6.53
5054 8324 6.126079 CGCCACATTGTTTTTGTTTGTTATC 58.874 36.000 0.00 0.00 0.00 1.75
5250 8527 1.743252 GGAGAGCCAAGCAACTCCG 60.743 63.158 13.90 0.00 41.34 4.63
5301 8578 7.934855 ACTGAAGCTCATGAGAAAATAATGT 57.065 32.000 27.04 10.33 0.00 2.71
5351 8628 7.713507 GGCATCAGTGTATTACTTGTGGTAATA 59.286 37.037 4.69 4.69 45.92 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.380112 AGGAGGTCCTCTACGGCAC 60.380 63.158 18.58 0.00 44.77 5.01
11 12 3.097293 AGGAGGTCCTCTACGGCA 58.903 61.111 18.58 0.00 44.77 5.69
19 20 6.922798 CTCAGTCTCGAGAAAGGAGGTCCT 62.923 54.167 18.55 3.48 41.03 3.85
20 21 1.474879 CAGTCTCGAGAAAGGAGGTCC 59.525 57.143 18.55 0.83 32.34 4.46
21 22 2.422127 CTCAGTCTCGAGAAAGGAGGTC 59.578 54.545 18.55 1.63 34.79 3.85
22 23 2.442413 CTCAGTCTCGAGAAAGGAGGT 58.558 52.381 18.55 0.00 34.79 3.85
23 24 1.134175 GCTCAGTCTCGAGAAAGGAGG 59.866 57.143 27.08 14.90 34.79 4.30
25 26 1.178276 GGCTCAGTCTCGAGAAAGGA 58.822 55.000 18.55 13.54 34.79 3.36
26 27 0.891373 TGGCTCAGTCTCGAGAAAGG 59.109 55.000 18.55 9.73 34.79 3.11
28 29 1.478510 GGATGGCTCAGTCTCGAGAAA 59.521 52.381 18.55 4.96 34.79 2.52
29 30 1.107114 GGATGGCTCAGTCTCGAGAA 58.893 55.000 18.55 0.05 34.79 2.87
30 31 0.753479 GGGATGGCTCAGTCTCGAGA 60.753 60.000 12.08 12.08 34.79 4.04
31 32 1.039785 TGGGATGGCTCAGTCTCGAG 61.040 60.000 5.93 5.93 36.02 4.04
32 33 0.397675 ATGGGATGGCTCAGTCTCGA 60.398 55.000 0.00 0.00 0.00 4.04
33 34 0.033228 GATGGGATGGCTCAGTCTCG 59.967 60.000 0.00 0.00 0.00 4.04
34 35 0.033228 CGATGGGATGGCTCAGTCTC 59.967 60.000 0.00 0.00 0.00 3.36
35 36 0.397675 TCGATGGGATGGCTCAGTCT 60.398 55.000 0.00 0.00 0.00 3.24
36 37 0.249657 GTCGATGGGATGGCTCAGTC 60.250 60.000 0.00 0.00 0.00 3.51
37 38 1.826024 GTCGATGGGATGGCTCAGT 59.174 57.895 0.00 0.00 0.00 3.41
38 39 1.300465 CGTCGATGGGATGGCTCAG 60.300 63.158 0.00 0.00 0.00 3.35
39 40 2.814604 CGTCGATGGGATGGCTCA 59.185 61.111 0.00 0.00 0.00 4.26
40 41 2.663188 GCGTCGATGGGATGGCTC 60.663 66.667 6.79 0.00 31.98 4.70
43 44 2.104572 ATCAGGCGTCGATGGGATGG 62.105 60.000 6.79 0.00 31.98 3.51
44 45 0.603065 TATCAGGCGTCGATGGGATG 59.397 55.000 6.79 0.00 34.62 3.51
45 46 0.891373 CTATCAGGCGTCGATGGGAT 59.109 55.000 6.79 0.51 0.00 3.85
46 47 1.806461 GCTATCAGGCGTCGATGGGA 61.806 60.000 6.79 0.00 0.00 4.37
47 48 1.373497 GCTATCAGGCGTCGATGGG 60.373 63.158 6.79 0.00 0.00 4.00
48 49 4.251760 GCTATCAGGCGTCGATGG 57.748 61.111 6.79 3.40 0.00 3.51
56 57 0.175760 TGTCCAAGTCGCTATCAGGC 59.824 55.000 0.00 0.00 0.00 4.85
57 58 2.271800 GTTGTCCAAGTCGCTATCAGG 58.728 52.381 0.00 0.00 0.00 3.86
58 59 2.926200 CTGTTGTCCAAGTCGCTATCAG 59.074 50.000 0.00 0.00 0.00 2.90
59 60 2.353704 CCTGTTGTCCAAGTCGCTATCA 60.354 50.000 0.00 0.00 0.00 2.15
60 61 2.271800 CCTGTTGTCCAAGTCGCTATC 58.728 52.381 0.00 0.00 0.00 2.08
61 62 1.066143 CCCTGTTGTCCAAGTCGCTAT 60.066 52.381 0.00 0.00 0.00 2.97
62 63 0.320374 CCCTGTTGTCCAAGTCGCTA 59.680 55.000 0.00 0.00 0.00 4.26
63 64 1.071471 CCCTGTTGTCCAAGTCGCT 59.929 57.895 0.00 0.00 0.00 4.93
64 65 0.534203 TTCCCTGTTGTCCAAGTCGC 60.534 55.000 0.00 0.00 0.00 5.19
65 66 1.226746 GTTCCCTGTTGTCCAAGTCG 58.773 55.000 0.00 0.00 0.00 4.18
66 67 2.341846 TGTTCCCTGTTGTCCAAGTC 57.658 50.000 0.00 0.00 0.00 3.01
67 68 2.818751 TTGTTCCCTGTTGTCCAAGT 57.181 45.000 0.00 0.00 0.00 3.16
68 69 3.490348 AGATTGTTCCCTGTTGTCCAAG 58.510 45.455 0.00 0.00 0.00 3.61
69 70 3.593442 AGATTGTTCCCTGTTGTCCAA 57.407 42.857 0.00 0.00 0.00 3.53
70 71 3.593442 AAGATTGTTCCCTGTTGTCCA 57.407 42.857 0.00 0.00 0.00 4.02
71 72 6.590234 AATAAAGATTGTTCCCTGTTGTCC 57.410 37.500 0.00 0.00 0.00 4.02
72 73 8.141268 TGAAAATAAAGATTGTTCCCTGTTGTC 58.859 33.333 0.00 0.00 0.00 3.18
73 74 7.926018 GTGAAAATAAAGATTGTTCCCTGTTGT 59.074 33.333 0.00 0.00 0.00 3.32
74 75 8.143835 AGTGAAAATAAAGATTGTTCCCTGTTG 58.856 33.333 0.00 0.00 0.00 3.33
75 76 8.250143 AGTGAAAATAAAGATTGTTCCCTGTT 57.750 30.769 0.00 0.00 0.00 3.16
76 77 7.725844 AGAGTGAAAATAAAGATTGTTCCCTGT 59.274 33.333 0.00 0.00 0.00 4.00
77 78 8.115490 AGAGTGAAAATAAAGATTGTTCCCTG 57.885 34.615 0.00 0.00 0.00 4.45
99 100 7.602517 ACCAAAGAAATGATAGAAACGAGAG 57.397 36.000 0.00 0.00 0.00 3.20
141 142 6.227522 TGATGTGTCTCTTAAAAACGGATGA 58.772 36.000 0.00 0.00 0.00 2.92
145 146 8.574196 AATTTTGATGTGTCTCTTAAAAACGG 57.426 30.769 0.00 0.00 0.00 4.44
260 261 4.742438 AGTGTTTTATGTACAAGCACGG 57.258 40.909 0.00 0.00 0.00 4.94
271 308 0.108851 GCGGGCCCAAGTGTTTTATG 60.109 55.000 24.92 0.84 0.00 1.90
272 309 1.591504 CGCGGGCCCAAGTGTTTTAT 61.592 55.000 24.92 0.00 0.00 1.40
283 320 4.982749 GGTACATAGCGCGGGCCC 62.983 72.222 22.01 13.57 41.24 5.80
287 324 2.029073 CCCAGGTACATAGCGCGG 59.971 66.667 8.83 0.00 0.00 6.46
303 340 1.517210 TAGAAAACGCGGCCCAAACC 61.517 55.000 12.47 0.00 0.00 3.27
306 343 1.658994 CTATAGAAAACGCGGCCCAA 58.341 50.000 12.47 0.00 0.00 4.12
329 366 2.125269 GTCCCCGTCCCGAATGTG 60.125 66.667 0.00 0.00 0.00 3.21
330 367 3.766691 CGTCCCCGTCCCGAATGT 61.767 66.667 0.00 0.00 0.00 2.71
331 368 3.766691 ACGTCCCCGTCCCGAATG 61.767 66.667 0.00 0.00 46.28 2.67
377 466 2.863988 AGGAAAGGGTGGGGGTGG 60.864 66.667 0.00 0.00 0.00 4.61
380 469 4.740822 CGCAGGAAAGGGTGGGGG 62.741 72.222 0.00 0.00 0.00 5.40
383 472 3.058160 CTGCGCAGGAAAGGGTGG 61.058 66.667 29.88 0.00 0.00 4.61
385 474 2.032681 GTCTGCGCAGGAAAGGGT 59.967 61.111 35.36 0.00 0.00 4.34
387 476 0.886490 AACAGTCTGCGCAGGAAAGG 60.886 55.000 35.36 22.04 0.00 3.11
388 477 0.236711 CAACAGTCTGCGCAGGAAAG 59.763 55.000 35.36 23.92 0.00 2.62
389 478 1.165907 CCAACAGTCTGCGCAGGAAA 61.166 55.000 35.36 15.65 0.00 3.13
390 479 1.597854 CCAACAGTCTGCGCAGGAA 60.598 57.895 35.36 16.46 0.00 3.36
394 483 1.153269 TGAACCAACAGTCTGCGCA 60.153 52.632 10.98 10.98 0.00 6.09
395 484 1.160329 AGTGAACCAACAGTCTGCGC 61.160 55.000 0.00 0.00 0.00 6.09
397 486 1.334869 CCAAGTGAACCAACAGTCTGC 59.665 52.381 0.00 0.00 0.00 4.26
398 487 1.949525 CCCAAGTGAACCAACAGTCTG 59.050 52.381 0.00 0.00 0.00 3.51
399 488 1.843851 TCCCAAGTGAACCAACAGTCT 59.156 47.619 0.00 0.00 0.00 3.24
400 489 2.222027 CTCCCAAGTGAACCAACAGTC 58.778 52.381 0.00 0.00 0.00 3.51
401 490 1.564348 ACTCCCAAGTGAACCAACAGT 59.436 47.619 0.00 0.00 33.32 3.55
403 492 1.474320 CGACTCCCAAGTGAACCAACA 60.474 52.381 0.00 0.00 35.28 3.33
404 493 1.226746 CGACTCCCAAGTGAACCAAC 58.773 55.000 0.00 0.00 35.28 3.77
405 494 0.107831 CCGACTCCCAAGTGAACCAA 59.892 55.000 0.00 0.00 35.28 3.67
406 495 1.052124 ACCGACTCCCAAGTGAACCA 61.052 55.000 0.00 0.00 35.28 3.67
408 497 0.391597 TCACCGACTCCCAAGTGAAC 59.608 55.000 0.00 0.00 36.36 3.18
409 498 0.679505 CTCACCGACTCCCAAGTGAA 59.320 55.000 0.00 0.00 38.68 3.18
410 499 1.816863 GCTCACCGACTCCCAAGTGA 61.817 60.000 0.00 0.00 35.28 3.41
415 504 2.997315 CCTGCTCACCGACTCCCA 60.997 66.667 0.00 0.00 0.00 4.37
424 589 3.655810 CTGTCGCCTCCCTGCTCAC 62.656 68.421 0.00 0.00 0.00 3.51
466 631 2.257980 TTTTTGAGCGCATGGCCG 59.742 55.556 11.47 0.00 45.17 6.13
480 645 6.601332 TCCTGTTGAGGTCTCTAACATTTTT 58.399 36.000 12.64 0.00 40.76 1.94
481 646 6.187727 TCCTGTTGAGGTCTCTAACATTTT 57.812 37.500 12.64 0.00 40.76 1.82
502 1122 2.360191 TGGCAAGCCATTCCCTCC 59.640 61.111 10.24 0.00 41.89 4.30
572 1192 3.126831 GAGGTAGTTCAAGGCATGATCG 58.873 50.000 0.00 0.00 38.03 3.69
605 1225 2.877097 TATATGCGGGCAATGGTCAT 57.123 45.000 0.00 0.00 0.00 3.06
606 1226 2.039613 TCATATATGCGGGCAATGGTCA 59.960 45.455 7.92 0.00 0.00 4.02
607 1227 2.420022 GTCATATATGCGGGCAATGGTC 59.580 50.000 7.92 0.00 0.00 4.02
608 1228 2.224744 TGTCATATATGCGGGCAATGGT 60.225 45.455 7.92 0.00 0.00 3.55
609 1229 2.435422 TGTCATATATGCGGGCAATGG 58.565 47.619 7.92 0.00 0.00 3.16
665 1301 0.534427 ATGCTCTGGGATGTGATGCG 60.534 55.000 0.00 0.00 0.00 4.73
699 1348 1.487452 CGTGGACTTGTGGTGTGTCG 61.487 60.000 0.00 0.00 0.00 4.35
700 1349 0.179094 TCGTGGACTTGTGGTGTGTC 60.179 55.000 0.00 0.00 0.00 3.67
701 1350 0.250793 TTCGTGGACTTGTGGTGTGT 59.749 50.000 0.00 0.00 0.00 3.72
702 1351 1.330521 CTTTCGTGGACTTGTGGTGTG 59.669 52.381 0.00 0.00 0.00 3.82
717 1366 6.338214 TCTCTATGATGAGAATCCCTTTCG 57.662 41.667 0.00 0.00 39.80 3.46
748 1437 5.049198 CACATGGCGACTAATCTATGCAAAT 60.049 40.000 0.00 0.00 0.00 2.32
845 1542 9.322773 GTGTCCCCTAGAAACAAATATACTAAC 57.677 37.037 0.00 0.00 32.33 2.34
968 1721 3.389727 AAGAGAGAGCGCGCGAGTC 62.390 63.158 37.18 27.85 0.00 3.36
975 1728 3.397613 ATGGGCCAAGAGAGAGCGC 62.398 63.158 11.89 0.00 39.68 5.92
1007 1778 1.383386 TAAGGGTGGCCGCCTATCA 60.383 57.895 33.66 14.57 0.00 2.15
1065 1836 0.895559 GTTGGAGGGGTGAAAGCTGG 60.896 60.000 0.00 0.00 0.00 4.85
1220 2009 9.673454 CGTACTTGTGTATGTATGTATGTATGT 57.327 33.333 0.00 0.00 32.52 2.29
1224 2013 8.131100 GGTACGTACTTGTGTATGTATGTATGT 58.869 37.037 24.07 0.00 46.49 2.29
1225 2014 8.347771 AGGTACGTACTTGTGTATGTATGTATG 58.652 37.037 24.07 0.00 46.49 2.39
1228 2017 6.764308 AGGTACGTACTTGTGTATGTATGT 57.236 37.500 24.07 0.00 46.49 2.29
1229 2018 8.347771 ACATAGGTACGTACTTGTGTATGTATG 58.652 37.037 29.84 19.58 46.49 2.39
1230 2019 8.455903 ACATAGGTACGTACTTGTGTATGTAT 57.544 34.615 29.84 11.46 46.49 2.29
1232 2021 6.764308 ACATAGGTACGTACTTGTGTATGT 57.236 37.500 29.84 22.11 46.85 2.29
1249 2038 8.204836 AGCAAGACAAACCTAATAGTACATAGG 58.795 37.037 14.46 14.46 43.59 2.57
1250 2039 9.601217 AAGCAAGACAAACCTAATAGTACATAG 57.399 33.333 0.00 0.00 0.00 2.23
1251 2040 9.378551 CAAGCAAGACAAACCTAATAGTACATA 57.621 33.333 0.00 0.00 0.00 2.29
1252 2041 8.100791 TCAAGCAAGACAAACCTAATAGTACAT 58.899 33.333 0.00 0.00 0.00 2.29
1253 2042 7.446769 TCAAGCAAGACAAACCTAATAGTACA 58.553 34.615 0.00 0.00 0.00 2.90
1254 2043 7.603024 ACTCAAGCAAGACAAACCTAATAGTAC 59.397 37.037 0.00 0.00 0.00 2.73
1255 2044 7.676947 ACTCAAGCAAGACAAACCTAATAGTA 58.323 34.615 0.00 0.00 0.00 1.82
1364 2186 9.970395 CAACAGTCACCTTACCGTATTAATATA 57.030 33.333 0.00 0.00 0.00 0.86
1413 2263 5.116882 ACTTCGCATATTAGGTTTGTCTCC 58.883 41.667 0.00 0.00 0.00 3.71
1414 2264 7.277098 TGTTACTTCGCATATTAGGTTTGTCTC 59.723 37.037 0.00 0.00 0.00 3.36
1486 2340 4.420168 CTGGAAGAGACGAAGATCAAGAC 58.580 47.826 0.00 0.00 34.07 3.01
1669 2524 4.347876 TGGACACAGTGGGAGGATATAATG 59.652 45.833 0.00 0.00 0.00 1.90
1740 2602 5.188434 TCTTTCCCTGAAGATGTAGCATTG 58.812 41.667 0.00 0.00 30.98 2.82
1792 2654 2.040544 CGATTGTGGTGTCCCTGGC 61.041 63.158 0.00 0.00 0.00 4.85
1837 2699 1.220749 GTGATGCAGGGCCTCGTAA 59.779 57.895 0.95 0.00 0.00 3.18
1888 2750 9.587772 TGTAATGAAGAGAAAATGAGTAGTAGC 57.412 33.333 0.00 0.00 0.00 3.58
1926 2791 9.565213 CAAAATTTAATCTTTGTTGTTTTGCCA 57.435 25.926 0.00 0.00 31.34 4.92
1996 2900 6.101150 ACTGGCTTCATTATGGAGTTATGGTA 59.899 38.462 2.12 0.00 0.00 3.25
2000 2904 7.397192 ACAAAACTGGCTTCATTATGGAGTTAT 59.603 33.333 2.12 0.00 0.00 1.89
2001 2905 6.719370 ACAAAACTGGCTTCATTATGGAGTTA 59.281 34.615 2.12 0.00 0.00 2.24
2002 2906 5.539955 ACAAAACTGGCTTCATTATGGAGTT 59.460 36.000 2.12 0.00 0.00 3.01
2003 2907 5.079643 ACAAAACTGGCTTCATTATGGAGT 58.920 37.500 2.12 0.00 0.00 3.85
2004 2908 5.649782 ACAAAACTGGCTTCATTATGGAG 57.350 39.130 0.00 0.00 0.00 3.86
2005 2909 6.267471 AGAAACAAAACTGGCTTCATTATGGA 59.733 34.615 0.00 0.00 0.00 3.41
2009 2913 6.294508 GCCTAGAAACAAAACTGGCTTCATTA 60.295 38.462 0.00 0.00 36.32 1.90
2016 2920 2.239400 AGGCCTAGAAACAAAACTGGC 58.761 47.619 1.29 0.00 38.28 4.85
2087 3034 7.280428 CCTATAGGATTTGAGATGCATGTCATC 59.720 40.741 25.41 20.01 43.91 2.92
2088 3035 7.110810 CCTATAGGATTTGAGATGCATGTCAT 58.889 38.462 25.41 13.07 36.10 3.06
2089 3036 6.470278 CCTATAGGATTTGAGATGCATGTCA 58.530 40.000 21.70 21.70 37.39 3.58
2090 3037 5.879223 CCCTATAGGATTTGAGATGCATGTC 59.121 44.000 21.07 16.63 38.24 3.06
2091 3038 5.549228 TCCCTATAGGATTTGAGATGCATGT 59.451 40.000 21.07 0.00 40.93 3.21
2092 3039 6.058553 TCCCTATAGGATTTGAGATGCATG 57.941 41.667 21.07 0.00 40.93 4.06
2093 3040 6.708885 TTCCCTATAGGATTTGAGATGCAT 57.291 37.500 21.07 0.00 46.94 3.96
2094 3041 6.329986 TCTTTCCCTATAGGATTTGAGATGCA 59.670 38.462 21.07 0.00 46.94 3.96
2095 3042 6.773638 TCTTTCCCTATAGGATTTGAGATGC 58.226 40.000 21.07 0.00 46.94 3.91
2096 3043 7.017056 ACCTCTTTCCCTATAGGATTTGAGATG 59.983 40.741 21.07 13.37 46.94 2.90
2097 3044 7.017056 CACCTCTTTCCCTATAGGATTTGAGAT 59.983 40.741 21.07 6.61 46.94 2.75
2098 3045 6.327626 CACCTCTTTCCCTATAGGATTTGAGA 59.672 42.308 21.07 13.40 46.94 3.27
2099 3046 6.100424 ACACCTCTTTCCCTATAGGATTTGAG 59.900 42.308 21.07 18.71 46.94 3.02
2100 3047 5.970640 ACACCTCTTTCCCTATAGGATTTGA 59.029 40.000 21.07 11.38 46.94 2.69
2101 3048 6.253946 ACACCTCTTTCCCTATAGGATTTG 57.746 41.667 21.07 3.30 46.94 2.32
2102 3049 6.910259 AACACCTCTTTCCCTATAGGATTT 57.090 37.500 21.07 0.00 46.94 2.17
2103 3050 8.582891 AATAACACCTCTTTCCCTATAGGATT 57.417 34.615 21.07 4.19 46.94 3.01
2104 3051 8.440771 CAAATAACACCTCTTTCCCTATAGGAT 58.559 37.037 21.07 0.00 46.94 3.24
2105 3052 7.147373 CCAAATAACACCTCTTTCCCTATAGGA 60.147 40.741 21.07 3.60 45.68 2.94
2106 3053 6.998673 CCAAATAACACCTCTTTCCCTATAGG 59.001 42.308 12.27 12.27 35.14 2.57
2107 3054 7.574607 ACCAAATAACACCTCTTTCCCTATAG 58.425 38.462 0.00 0.00 0.00 1.31
2108 3055 7.519347 ACCAAATAACACCTCTTTCCCTATA 57.481 36.000 0.00 0.00 0.00 1.31
2109 3056 6.402981 ACCAAATAACACCTCTTTCCCTAT 57.597 37.500 0.00 0.00 0.00 2.57
2110 3057 5.853572 ACCAAATAACACCTCTTTCCCTA 57.146 39.130 0.00 0.00 0.00 3.53
2111 3058 4.741928 ACCAAATAACACCTCTTTCCCT 57.258 40.909 0.00 0.00 0.00 4.20
2112 3059 4.082949 CGAACCAAATAACACCTCTTTCCC 60.083 45.833 0.00 0.00 0.00 3.97
2113 3060 4.517832 ACGAACCAAATAACACCTCTTTCC 59.482 41.667 0.00 0.00 0.00 3.13
2114 3061 5.237779 TGACGAACCAAATAACACCTCTTTC 59.762 40.000 0.00 0.00 0.00 2.62
2115 3062 5.127491 TGACGAACCAAATAACACCTCTTT 58.873 37.500 0.00 0.00 0.00 2.52
2116 3063 4.710324 TGACGAACCAAATAACACCTCTT 58.290 39.130 0.00 0.00 0.00 2.85
2117 3064 4.345859 TGACGAACCAAATAACACCTCT 57.654 40.909 0.00 0.00 0.00 3.69
2118 3065 6.920569 ATATGACGAACCAAATAACACCTC 57.079 37.500 0.00 0.00 0.00 3.85
2119 3066 8.208224 TCATATATGACGAACCAAATAACACCT 58.792 33.333 11.49 0.00 0.00 4.00
2120 3067 8.373048 TCATATATGACGAACCAAATAACACC 57.627 34.615 11.49 0.00 0.00 4.16
2152 3101 5.878406 ACATTAGTCTAGACTCAATGGGG 57.122 43.478 31.66 20.42 42.54 4.96
2153 3102 9.482627 GATAAACATTAGTCTAGACTCAATGGG 57.517 37.037 31.66 21.09 42.54 4.00
2256 3205 6.803154 AGGAATCTTGTAAGAAAAACTCCG 57.197 37.500 0.00 0.00 38.77 4.63
2283 3232 9.454859 ACAGGAATTTTGTGGTAATTTCAAAAA 57.545 25.926 6.43 4.59 41.87 1.94
2294 3243 5.941555 TTGGTTTACAGGAATTTTGTGGT 57.058 34.783 6.76 0.00 0.00 4.16
2487 4923 4.647611 TGGGTAATTAGGCGTCAATATGG 58.352 43.478 0.00 0.00 0.00 2.74
2625 5334 2.401017 TCGATAGACGATTGGAAGCG 57.599 50.000 0.00 0.00 46.45 4.68
2696 5408 5.119588 GCGAGCACATATTACGCCTAATTTA 59.880 40.000 0.00 0.00 42.79 1.40
2715 5427 4.065088 TGGTTGATCTATAAATGGCGAGC 58.935 43.478 0.00 0.00 0.00 5.03
2827 5541 8.663025 CATATCATGTACCTGATAGAACATTGC 58.337 37.037 20.82 0.00 40.48 3.56
3060 6122 1.598701 GATGGTGGCTTGCACCTTCC 61.599 60.000 11.31 0.00 42.92 3.46
3080 6142 7.202289 GGGGATGTTATAATTAAAGGGGAGAGT 60.202 40.741 0.00 0.00 0.00 3.24
3081 6143 7.175797 GGGGATGTTATAATTAAAGGGGAGAG 58.824 42.308 0.00 0.00 0.00 3.20
3098 6160 4.402474 GCACTTAAGCTTATTGGGGATGTT 59.598 41.667 7.08 0.00 0.00 2.71
3106 6168 7.872163 TTTCAACATGCACTTAAGCTTATTG 57.128 32.000 7.08 8.92 34.99 1.90
3112 6174 6.151691 TCTCATTTTCAACATGCACTTAAGC 58.848 36.000 1.29 0.00 0.00 3.09
3121 6183 6.684686 ACATGGTCTTCTCATTTTCAACATG 58.315 36.000 0.00 0.00 38.27 3.21
3122 6184 6.906157 ACATGGTCTTCTCATTTTCAACAT 57.094 33.333 0.00 0.00 0.00 2.71
3242 6304 8.376942 GTGTACGTTTGTCATTCAAAATTTGTT 58.623 29.630 5.56 0.00 45.84 2.83
3274 6336 1.202582 CCCATACTTCCTCTATCCGCG 59.797 57.143 0.00 0.00 0.00 6.46
3312 6375 3.245550 TGGGATGTGTTCATGGGATCAAA 60.246 43.478 0.00 0.00 34.06 2.69
3362 6425 4.384056 CATCTTGACTTGTTGAGTGGAGT 58.616 43.478 0.00 0.00 39.19 3.85
3363 6426 3.188048 GCATCTTGACTTGTTGAGTGGAG 59.812 47.826 0.00 0.00 39.19 3.86
3529 6726 2.159352 TGTTGCTGCATGAATCGATTGG 60.159 45.455 16.96 6.05 0.00 3.16
3618 6818 3.552875 GGCTGGGGAGTACTAAAAATCC 58.447 50.000 0.00 0.00 0.00 3.01
3636 6836 5.850046 AAATGCTCTTATACTATGGGGCT 57.150 39.130 0.00 0.00 0.00 5.19
3638 6838 7.502226 TGTCAAAAATGCTCTTATACTATGGGG 59.498 37.037 0.00 0.00 0.00 4.96
3668 6868 8.547967 TCCATCCAATAATATAAGAGCGTTTC 57.452 34.615 0.00 0.00 0.00 2.78
3686 6886 4.834406 AATCTAGTACTCCCTCCATCCA 57.166 45.455 0.00 0.00 0.00 3.41
3696 6896 5.354792 CGCCCCACTATCTAATCTAGTACTC 59.645 48.000 0.00 0.00 0.00 2.59
3715 6915 3.666253 CGGTCACCAAAACGCCCC 61.666 66.667 0.00 0.00 0.00 5.80
3796 6996 7.806487 CACACATATACATTTCATCCTTGCATC 59.194 37.037 0.00 0.00 0.00 3.91
3839 7039 7.834881 TGATACTATTCGTCTTCCAGGTATT 57.165 36.000 0.00 0.00 0.00 1.89
3843 7043 5.923114 CACATGATACTATTCGTCTTCCAGG 59.077 44.000 0.00 0.00 0.00 4.45
3846 7046 5.533482 AGCACATGATACTATTCGTCTTCC 58.467 41.667 0.00 0.00 0.00 3.46
4000 7248 7.460910 AGGCCTCCATTTACAATTTTCAAAAT 58.539 30.769 0.00 0.00 0.00 1.82
4003 7251 6.036577 GAGGCCTCCATTTACAATTTTCAA 57.963 37.500 23.19 0.00 0.00 2.69
4222 7490 4.705507 AGAAGTTCATGCCGTCTAAGTAGA 59.294 41.667 5.50 0.00 0.00 2.59
4269 7537 4.990426 AGAGTTTGCACCAACAAAATATGC 59.010 37.500 4.19 0.00 40.99 3.14
4359 7627 4.713792 AGTCTTGATTCACCTTGGAAGT 57.286 40.909 0.00 0.00 0.00 3.01
4414 7682 6.882678 ACCGGAACATTGCTAGTATAAACTTT 59.117 34.615 9.46 0.00 37.15 2.66
4442 7710 7.970061 AGAAATCATTGTATCATGGAAAACACG 59.030 33.333 0.00 0.00 0.00 4.49
4452 7720 8.722480 TCGAAACAGAGAAATCATTGTATCAT 57.278 30.769 0.00 0.00 0.00 2.45
4534 7803 3.437741 AGTTTAATAAAGCAACGGGTCCG 59.562 43.478 7.97 7.97 46.03 4.79
4536 7805 6.973229 TCTAGTTTAATAAAGCAACGGGTC 57.027 37.500 0.00 0.00 0.00 4.46
4568 7837 2.237393 TTTTTCCGCTGCAAAGCATT 57.763 40.000 0.00 0.00 38.13 3.56
4569 7838 2.460757 ATTTTTCCGCTGCAAAGCAT 57.539 40.000 0.00 0.00 38.13 3.79
4570 7839 3.377346 TTATTTTTCCGCTGCAAAGCA 57.623 38.095 0.00 0.00 36.92 3.91
4573 7842 9.862371 TTTATTAGATTATTTTTCCGCTGCAAA 57.138 25.926 0.00 0.00 0.00 3.68
4608 7877 8.195436 TCGGAACCATTTGTTTATTGTTTACAA 58.805 29.630 0.00 0.00 37.29 2.41
4650 7919 5.126067 ACCATTCCACACTAGCATAACATC 58.874 41.667 0.00 0.00 0.00 3.06
4736 8005 5.007136 CAGAAGGAAATAAGCATCTTCGACC 59.993 44.000 0.00 0.00 38.89 4.79
4768 8037 7.422399 ACGATGTTTGTTTTAATGTGTAGCTT 58.578 30.769 0.00 0.00 0.00 3.74
4902 8172 7.268586 AGTACTTAGTACCATCTGCTTCAATG 58.731 38.462 17.78 0.00 39.58 2.82
4912 8182 5.684291 GCCAAAGGGAGTACTTAGTACCATC 60.684 48.000 17.78 10.38 35.71 3.51
4930 8200 3.900941 AGTCACTTATTTTGCGCCAAAG 58.099 40.909 12.50 7.60 34.72 2.77
4933 8203 2.499197 TGAGTCACTTATTTTGCGCCA 58.501 42.857 4.18 0.00 0.00 5.69
4935 8205 4.147219 AGTTGAGTCACTTATTTTGCGC 57.853 40.909 0.00 0.00 0.00 6.09
4937 8207 8.129211 AGTACAAAGTTGAGTCACTTATTTTGC 58.871 33.333 9.82 0.00 35.87 3.68
5001 8271 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
5107 8377 9.751542 ATACTTCGTATGAATTAGAACTCTTGG 57.248 33.333 0.00 0.00 32.61 3.61
5126 8396 6.422701 TGTCAGTTGTAAGTTTGGATACTTCG 59.577 38.462 0.00 0.00 39.08 3.79
5205 8479 7.227049 GGGACCAAGACTTAATTTTTCATGA 57.773 36.000 0.00 0.00 0.00 3.07
5351 8628 8.757982 ATGATTTTCCATTTCTACAGTAGCAT 57.242 30.769 2.26 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.