Multiple sequence alignment - TraesCS5A01G004700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G004700 chr5A 100.000 4084 0 0 1 4084 3198026 3193943 0.000000e+00 7542
1 TraesCS5A01G004700 chr5D 96.762 4077 105 7 1 4076 6454631 6458681 0.000000e+00 6772
2 TraesCS5A01G004700 chr5D 89.451 1166 100 17 2071 3218 5424520 5425680 0.000000e+00 1450
3 TraesCS5A01G004700 chr5D 86.380 558 65 6 979 1528 5423585 5424139 2.100000e-167 599


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G004700 chr5A 3193943 3198026 4083 True 7542.0 7542 100.0000 1 4084 1 chr5A.!!$R1 4083
1 TraesCS5A01G004700 chr5D 6454631 6458681 4050 False 6772.0 6772 96.7620 1 4076 1 chr5D.!!$F1 4075
2 TraesCS5A01G004700 chr5D 5423585 5425680 2095 False 1024.5 1450 87.9155 979 3218 2 chr5D.!!$F2 2239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 728 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.0 0.00 3.72 F
1869 1910 0.776451 CGCCGTTAATAGCACGCTAG 59.224 55.000 4.87 0.0 36.27 3.42 F
2531 2616 1.153549 CGGAGCTTGCCTACTCACC 60.154 63.158 0.00 0.0 34.48 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 1966 0.953471 AGCGCACGCCTCAAAATACA 60.953 50.0 11.47 0.0 43.17 2.29 R
2861 2946 0.104120 AAGAAAACTTGCCGCCAACC 59.896 50.0 0.00 0.0 0.00 3.77 R
3949 4047 0.179070 TGACAACGTAGTGCTTGCCA 60.179 50.0 0.00 0.0 45.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 7.502339 CGTTCAAACTTTCACTATCAGTACAG 58.498 38.462 0.00 0.00 0.00 2.74
415 416 2.365617 CTGGAGGCGTATTCAGGTATGT 59.634 50.000 0.00 0.00 0.00 2.29
500 501 7.698970 GCACTAGAACAGAACTATCAAGTCTAC 59.301 40.741 0.00 0.00 33.75 2.59
579 580 5.690464 AAGCCTTGTCATATCTCAAGAGT 57.310 39.130 14.40 3.03 42.22 3.24
594 595 6.574350 TCTCAAGAGTTTATCGAGGGAAATC 58.426 40.000 0.00 0.00 0.00 2.17
655 656 4.855531 GGCAACAACCCGATCAAATATAC 58.144 43.478 0.00 0.00 0.00 1.47
726 727 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
727 728 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
728 729 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
729 730 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
730 731 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
731 732 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
732 733 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
733 734 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
734 735 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
735 736 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
736 737 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
737 738 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
738 739 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
739 740 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
740 741 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
741 742 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
869 870 1.227380 GCCGCTGGGTGAGATGTAG 60.227 63.158 0.00 0.00 34.97 2.74
1461 1468 4.099633 AGTTGAGGAGACATCTTGATCCA 58.900 43.478 0.00 0.00 32.04 3.41
1682 1723 8.988934 GTGTTGTCTTCTGAATTCATAACTACA 58.011 33.333 8.96 13.52 0.00 2.74
1700 1741 6.681729 ACTACAAGAGAAGTTACCATGGAA 57.318 37.500 21.47 5.58 0.00 3.53
1800 1841 9.834628 TGAAAATTGAAATATTTGTCCGTACTC 57.165 29.630 5.17 0.00 0.00 2.59
1864 1905 3.829948 TCTATAGCGCCGTTAATAGCAC 58.170 45.455 2.29 0.00 0.00 4.40
1869 1910 0.776451 CGCCGTTAATAGCACGCTAG 59.224 55.000 4.87 0.00 36.27 3.42
1919 1960 5.835113 AAATTATTGTACAATGCCTCGCT 57.165 34.783 27.62 5.42 32.50 4.93
1925 1966 4.665833 TGTACAATGCCTCGCTAATAGT 57.334 40.909 0.00 0.00 0.00 2.12
1938 1979 4.743151 TCGCTAATAGTGTATTTTGAGGCG 59.257 41.667 0.40 0.00 0.00 5.52
2165 2250 5.521372 TGAAGAGTTGCTCATGTTGATATCG 59.479 40.000 0.00 0.00 32.06 2.92
2531 2616 1.153549 CGGAGCTTGCCTACTCACC 60.154 63.158 0.00 0.00 34.48 4.02
2589 2674 7.703621 AGCAAAAGGAAATCATGATGAAATACG 59.296 33.333 9.46 0.00 0.00 3.06
2661 2746 2.301870 TGTATCAAAGAGGCACTTCGGT 59.698 45.455 0.00 0.00 41.55 4.69
2861 2946 1.153823 CGTAAGGCAGGAGGACGTG 60.154 63.158 0.00 0.00 35.36 4.49
3053 3138 3.464833 AGCCTCAAGGGAATATGATGGTT 59.535 43.478 0.00 0.00 37.23 3.67
3163 3258 6.658849 TGGGTGCATCACTTATTACTTGTAT 58.341 36.000 0.00 0.00 34.40 2.29
3165 3260 7.613801 TGGGTGCATCACTTATTACTTGTATTT 59.386 33.333 0.00 0.00 34.40 1.40
3227 3325 7.271511 CCTTGGATGAGCTATATATGGTCTTC 58.728 42.308 14.68 14.68 36.22 2.87
3231 3329 7.843252 TGGATGAGCTATATATGGTCTTCTCAT 59.157 37.037 13.20 13.20 41.18 2.90
3240 3338 3.319137 TGGTCTTCTCATAGTGTGTGC 57.681 47.619 0.00 0.00 0.00 4.57
3263 3361 5.221362 GCCACTAGTAAACATTTGGTTGGTT 60.221 40.000 0.00 0.00 40.35 3.67
3277 3375 3.572255 TGGTTGGTTTCCATTAACTCAGC 59.428 43.478 0.00 0.00 31.53 4.26
3306 3404 3.076032 ACCCATTAGCTGGTCTTTTTCCT 59.924 43.478 0.00 0.00 44.30 3.36
3377 3475 9.686683 ATAAAAGTACATGCAGTAGGAAATTCT 57.313 29.630 0.00 0.00 32.19 2.40
3438 3536 2.996631 AGGATGGACTTGCAGATTGAC 58.003 47.619 0.00 0.00 0.00 3.18
3490 3588 1.452651 CAGCGATGTTGGGAGCCAT 60.453 57.895 0.00 0.00 31.53 4.40
3512 3610 2.290260 GGTCACAATGAGATGGTGGTCA 60.290 50.000 0.00 0.00 33.45 4.02
3530 3628 4.080807 TGGTCATCGGAAATTACCTTAGCA 60.081 41.667 0.00 0.00 0.00 3.49
3537 3635 4.977963 CGGAAATTACCTTAGCATTGCATG 59.022 41.667 11.91 0.16 0.00 4.06
3543 3641 4.192429 ACCTTAGCATTGCATGTTTTCC 57.808 40.909 11.91 0.00 0.00 3.13
3568 3666 0.940126 CCTCATAGCACAACCATCGC 59.060 55.000 0.00 0.00 0.00 4.58
3586 3684 1.895231 CAGTTGTGCAGCAGAGGCA 60.895 57.895 0.00 0.00 44.61 4.75
3595 3693 2.817396 GCAGAGGCAAGGTCGAGC 60.817 66.667 6.48 6.48 40.72 5.03
3611 3709 1.877680 CGAGCCGGAAATCATGCCATA 60.878 52.381 5.05 0.00 0.00 2.74
3614 3712 1.808945 GCCGGAAATCATGCCATAGAG 59.191 52.381 5.05 0.00 0.00 2.43
3648 3746 1.227380 GCTTCGACGATGGGAGCAT 60.227 57.895 13.06 0.00 0.00 3.79
3675 3773 2.260869 CCACCTGGAAGCACAACCG 61.261 63.158 0.00 0.00 37.39 4.44
3723 3821 2.483188 GCACCCGAAGAATAGGTACTGG 60.483 54.545 0.00 0.00 41.52 4.00
3734 3832 0.399233 AGGTACTGGATGGCCTCCTC 60.399 60.000 18.49 7.26 45.21 3.71
3756 3854 1.843851 TCCCCACAGAAGACACAACTT 59.156 47.619 0.00 0.00 0.00 2.66
3757 3855 1.949525 CCCCACAGAAGACACAACTTG 59.050 52.381 0.00 0.00 0.00 3.16
3758 3856 1.334869 CCCACAGAAGACACAACTTGC 59.665 52.381 0.00 0.00 0.00 4.01
3759 3857 2.016318 CCACAGAAGACACAACTTGCA 58.984 47.619 0.00 0.00 0.00 4.08
3784 3882 9.948964 CAGTGGATATAATACAAGGATGATGAA 57.051 33.333 0.00 0.00 0.00 2.57
3786 3884 8.887717 GTGGATATAATACAAGGATGATGAAGC 58.112 37.037 0.00 0.00 0.00 3.86
3787 3885 8.605065 TGGATATAATACAAGGATGATGAAGCA 58.395 33.333 0.00 0.00 0.00 3.91
3806 3904 4.082523 GCTAGCACACGGGAGGCA 62.083 66.667 10.63 0.00 0.00 4.75
3813 3911 2.438434 CACGGGAGGCAATGACCC 60.438 66.667 0.00 0.00 40.17 4.46
3838 3936 9.202273 CCTATAGCAGAGTCAAATGAATAACTC 57.798 37.037 0.00 0.00 38.71 3.01
3845 3943 9.219603 CAGAGTCAAATGAATAACTCAAACCTA 57.780 33.333 4.39 0.00 40.45 3.08
3870 3968 1.330655 GGCGAAGGGTCTCCAGATGA 61.331 60.000 0.00 0.00 34.83 2.92
3910 4008 0.465097 GGGTGATGAGCCATGGTCAG 60.465 60.000 14.67 0.00 43.30 3.51
3940 4038 1.003355 CGACTGCCATGAAGGGTGT 60.003 57.895 0.00 0.00 38.09 4.16
3942 4040 1.003355 ACTGCCATGAAGGGTGTCG 60.003 57.895 0.00 0.00 38.09 4.35
3943 4041 1.296392 CTGCCATGAAGGGTGTCGA 59.704 57.895 0.00 0.00 38.09 4.20
3949 4047 1.276421 CATGAAGGGTGTCGAGAAGGT 59.724 52.381 0.00 0.00 0.00 3.50
3959 4057 1.302033 CGAGAAGGTGGCAAGCACT 60.302 57.895 0.00 0.00 0.00 4.40
3995 4094 2.237143 ACCCATACATAGGATCATGGCG 59.763 50.000 0.00 0.00 37.25 5.69
4026 4125 2.357009 GAGTTGGGCAGCAGTAATGATG 59.643 50.000 3.66 3.66 0.00 3.07
4046 4145 6.563422 TGATGCTTTTAATAGTCCAATGCAC 58.437 36.000 0.00 0.00 34.51 4.57
4076 4175 4.434713 GCACCTATTGTGGTTGTTTAGG 57.565 45.455 0.00 0.00 45.55 2.69
4077 4176 3.192633 GCACCTATTGTGGTTGTTTAGGG 59.807 47.826 0.00 0.00 45.55 3.53
4078 4177 4.403734 CACCTATTGTGGTTGTTTAGGGT 58.596 43.478 0.00 0.00 41.52 4.34
4079 4178 5.562635 CACCTATTGTGGTTGTTTAGGGTA 58.437 41.667 0.00 0.00 41.52 3.69
4080 4179 5.646360 CACCTATTGTGGTTGTTTAGGGTAG 59.354 44.000 0.00 0.00 41.52 3.18
4081 4180 4.638865 CCTATTGTGGTTGTTTAGGGTAGC 59.361 45.833 0.00 0.00 0.00 3.58
4082 4181 3.868619 TTGTGGTTGTTTAGGGTAGCT 57.131 42.857 0.00 0.00 0.00 3.32
4083 4182 3.412237 TGTGGTTGTTTAGGGTAGCTC 57.588 47.619 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
415 416 9.063615 GTGGAGAGGAAACAAATTAACTTCTAA 57.936 33.333 0.00 0.00 0.00 2.10
500 501 4.331168 CGAAGAAGACAAGGCTTTAGATGG 59.669 45.833 0.00 0.00 0.00 3.51
579 580 2.847449 TGGGGTGATTTCCCTCGATAAA 59.153 45.455 1.72 0.00 46.27 1.40
594 595 8.349983 CCGATAATTAGTTTCTTATTTGGGGTG 58.650 37.037 0.00 0.00 0.00 4.61
629 630 2.046314 ATCGGGTTGTTGCCGAGG 60.046 61.111 0.00 0.00 39.31 4.63
653 654 4.956700 TGTTTCCATTTCCTTGTTGGTGTA 59.043 37.500 0.00 0.00 37.07 2.90
655 656 4.099266 TCTGTTTCCATTTCCTTGTTGGTG 59.901 41.667 0.00 0.00 37.07 4.17
685 686 9.575868 TGTGTAGTTTAAACAGATTAATTCCCA 57.424 29.630 20.06 0.00 33.60 4.37
695 696 5.932883 TGTGTGTGTGTGTAGTTTAAACAGA 59.067 36.000 20.06 5.07 0.00 3.41
726 727 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
727 728 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
728 729 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
729 730 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
730 731 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
731 732 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
732 733 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
733 734 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
734 735 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
735 736 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
736 737 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
737 738 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
738 739 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
739 740 0.036164 AGGTGTGTGTGTGTGTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
740 741 0.447406 CAGGTGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 0.00 3.82
741 742 1.305219 GCAGGTGTGTGTGTGTGTGT 61.305 55.000 0.00 0.00 0.00 3.72
845 846 1.077787 CTCACCCAGCGGCCAAATA 60.078 57.895 2.24 0.00 0.00 1.40
851 852 1.227380 CTACATCTCACCCAGCGGC 60.227 63.158 0.00 0.00 0.00 6.53
869 870 1.028905 AGTAGCTCAGTCTCCGCATC 58.971 55.000 0.00 0.00 0.00 3.91
1461 1468 1.625818 ACCTCGACCTCTTGAAGCATT 59.374 47.619 0.00 0.00 0.00 3.56
1682 1723 7.780271 AGAAAAAGTTCCATGGTAACTTCTCTT 59.220 33.333 27.77 22.75 44.35 2.85
1903 1944 4.808895 CACTATTAGCGAGGCATTGTACAA 59.191 41.667 11.41 11.41 0.00 2.41
1919 1960 4.269123 CGCACGCCTCAAAATACACTATTA 59.731 41.667 0.00 0.00 0.00 0.98
1925 1966 0.953471 AGCGCACGCCTCAAAATACA 60.953 50.000 11.47 0.00 43.17 2.29
2165 2250 4.338682 TCTTTTCCTAGTAGACATCGGCTC 59.661 45.833 0.00 0.00 0.00 4.70
2531 2616 1.401905 GCCGCTAAGAACTTTGGATGG 59.598 52.381 0.00 0.00 0.00 3.51
2589 2674 7.992754 AGGCATCATATTCTATTTTGTCCTC 57.007 36.000 0.00 0.00 0.00 3.71
2661 2746 2.834549 ACATTGTTGTTGGTGGGTTCAA 59.165 40.909 0.00 0.00 29.55 2.69
2861 2946 0.104120 AAGAAAACTTGCCGCCAACC 59.896 50.000 0.00 0.00 0.00 3.77
3053 3138 0.456221 GCTGGCGTCTCTTGTAGCTA 59.544 55.000 0.00 0.00 0.00 3.32
3090 3175 7.501559 GGTGCTCCTCATGCAAATGATATATAT 59.498 37.037 0.00 0.00 42.41 0.86
3239 3337 4.279922 ACCAACCAAATGTTTACTAGTGGC 59.720 41.667 5.39 0.00 34.00 5.01
3240 3338 6.399639 AACCAACCAAATGTTTACTAGTGG 57.600 37.500 5.39 0.00 34.00 4.00
3263 3361 3.938963 GTGAATCCGCTGAGTTAATGGAA 59.061 43.478 0.00 0.00 31.42 3.53
3277 3375 1.597742 CCAGCTAATGGGTGAATCCG 58.402 55.000 0.00 0.00 46.36 4.18
3354 3452 9.515226 TTAAGAATTTCCTACTGCATGTACTTT 57.485 29.630 0.00 0.00 0.00 2.66
3394 3492 4.962362 AGAGGAGTGGGTCAAAAATGTTTT 59.038 37.500 0.00 0.00 0.00 2.43
3412 3510 2.023984 TCTGCAAGTCCATCCTAGAGGA 60.024 50.000 0.00 0.00 41.78 3.71
3438 3536 0.532640 TGGTGATGCGATGATTCCGG 60.533 55.000 0.00 0.00 0.00 5.14
3490 3588 1.704628 ACCACCATCTCATTGTGACCA 59.295 47.619 0.00 0.00 31.66 4.02
3512 3610 4.887071 TGCAATGCTAAGGTAATTTCCGAT 59.113 37.500 6.82 0.00 0.00 4.18
3530 3628 4.773674 TGAGGAATCTGGAAAACATGCAAT 59.226 37.500 0.00 0.00 0.00 3.56
3537 3635 4.943705 TGTGCTATGAGGAATCTGGAAAAC 59.056 41.667 0.00 0.00 0.00 2.43
3543 3641 3.877559 TGGTTGTGCTATGAGGAATCTG 58.122 45.455 0.00 0.00 0.00 2.90
3568 3666 1.449726 TTGCCTCTGCTGCACAACTG 61.450 55.000 0.00 0.00 38.72 3.16
3586 3684 0.541863 ATGATTTCCGGCTCGACCTT 59.458 50.000 0.00 0.00 35.61 3.50
3595 3693 3.070018 GTCTCTATGGCATGATTTCCGG 58.930 50.000 10.98 0.00 0.00 5.14
3596 3694 3.732212 TGTCTCTATGGCATGATTTCCG 58.268 45.455 10.98 0.00 0.00 4.30
3611 3709 2.644212 CCTCTGCACGCCTGTCTCT 61.644 63.158 0.00 0.00 0.00 3.10
3648 3746 2.141011 CTTCCAGGTGGCATGTCCCA 62.141 60.000 7.45 0.00 34.44 4.37
3723 3821 2.851588 GGGGAGGAGGAGGCCATC 60.852 72.222 5.01 0.00 0.00 3.51
3734 3832 0.764890 TTGTGTCTTCTGTGGGGAGG 59.235 55.000 0.00 0.00 0.00 4.30
3756 3854 7.315066 TCATCCTTGTATTATATCCACTGCA 57.685 36.000 0.00 0.00 0.00 4.41
3757 3855 8.043113 TCATCATCCTTGTATTATATCCACTGC 58.957 37.037 0.00 0.00 0.00 4.40
3758 3856 9.948964 TTCATCATCCTTGTATTATATCCACTG 57.051 33.333 0.00 0.00 0.00 3.66
3784 3882 2.124983 CCCGTGTGCTAGCATGCT 60.125 61.111 25.99 25.99 0.00 3.79
3785 3883 2.125147 TCCCGTGTGCTAGCATGC 60.125 61.111 22.51 10.51 0.00 4.06
3786 3884 1.522355 CCTCCCGTGTGCTAGCATG 60.522 63.158 22.51 13.67 0.00 4.06
3787 3885 2.903357 CCTCCCGTGTGCTAGCAT 59.097 61.111 22.51 0.00 0.00 3.79
3813 3911 9.755804 TGAGTTATTCATTTGACTCTGCTATAG 57.244 33.333 0.00 0.00 39.33 1.31
3838 3936 0.739813 CTTCGCCCCGAGTAGGTTTG 60.740 60.000 0.00 0.00 37.14 2.93
3845 3943 4.698625 AGACCCTTCGCCCCGAGT 62.699 66.667 0.00 0.00 37.14 4.18
3870 3968 0.820891 GTTGATGGCTCCGCATCCAT 60.821 55.000 0.00 0.99 45.17 3.41
3879 3977 1.386533 CATCACCCTGTTGATGGCTC 58.613 55.000 5.36 0.00 46.29 4.70
3910 4008 3.036084 CAGTCGACGCACACACCC 61.036 66.667 10.46 0.00 0.00 4.61
3940 4038 1.301716 GTGCTTGCCACCTTCTCGA 60.302 57.895 0.00 0.00 38.55 4.04
3942 4040 1.443802 GTAGTGCTTGCCACCTTCTC 58.556 55.000 0.00 0.00 45.83 2.87
3943 4041 0.320771 CGTAGTGCTTGCCACCTTCT 60.321 55.000 0.00 0.00 45.83 2.85
3949 4047 0.179070 TGACAACGTAGTGCTTGCCA 60.179 50.000 0.00 0.00 45.00 4.92
3959 4057 1.049402 TGGGTGTGGATGACAACGTA 58.951 50.000 0.00 0.00 44.07 3.57
4026 4125 4.142469 ACCGTGCATTGGACTATTAAAAGC 60.142 41.667 14.26 0.00 0.00 3.51
4033 4132 2.170397 TCATGACCGTGCATTGGACTAT 59.830 45.455 14.26 3.54 0.00 2.12
4046 4145 1.935873 CACAATAGGTGCTCATGACCG 59.064 52.381 0.00 0.00 41.36 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.