Multiple sequence alignment - TraesCS5A01G004200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G004200 chr5A 100.000 7785 0 0 1 7785 2900601 2892817 0.000000e+00 14377.0
1 TraesCS5A01G004200 chr5A 98.835 3520 18 3 3212 6713 2974147 2970633 0.000000e+00 6252.0
2 TraesCS5A01G004200 chr5A 99.792 2406 5 0 789 3194 2976537 2974132 0.000000e+00 4416.0
3 TraesCS5A01G004200 chr5A 99.622 793 2 1 1 793 2978899 2978108 0.000000e+00 1447.0
4 TraesCS5A01G004200 chr5A 98.613 793 11 0 1 793 2985867 2985075 0.000000e+00 1404.0
5 TraesCS5A01G004200 chr5A 98.361 793 13 0 1 793 2907249 2906457 0.000000e+00 1393.0
6 TraesCS5A01G004200 chr5A 95.833 96 4 0 4994 5089 605313485 605313390 1.050000e-33 156.0
7 TraesCS5A01G004200 chr5A 94.000 100 6 0 1458 1557 699483282 699483183 1.350000e-32 152.0
8 TraesCS5A01G004200 chr5A 91.150 113 7 2 789 898 248422468 248422580 4.870000e-32 150.0
9 TraesCS5A01G004200 chr5D 93.060 2565 104 37 4283 6825 7016637 7014125 0.000000e+00 3683.0
10 TraesCS5A01G004200 chr5D 92.000 1000 56 14 2214 3194 7018743 7017749 0.000000e+00 1382.0
11 TraesCS5A01G004200 chr5D 93.248 622 34 7 3212 3828 7017764 7017146 0.000000e+00 909.0
12 TraesCS5A01G004200 chr5D 85.138 942 56 43 899 1803 7019971 7019077 0.000000e+00 887.0
13 TraesCS5A01G004200 chr5D 87.569 362 28 8 3831 4175 7017069 7016708 3.380000e-108 403.0
14 TraesCS5A01G004200 chr5D 93.796 274 8 4 1913 2183 7019094 7018827 3.380000e-108 403.0
15 TraesCS5A01G004200 chr5D 85.203 419 23 20 6831 7210 7014087 7013669 2.040000e-105 394.0
16 TraesCS5A01G004200 chr5D 86.058 208 25 4 7209 7413 1587800 1588006 3.660000e-53 220.0
17 TraesCS5A01G004200 chr5D 88.430 121 10 3 789 906 211710379 211710260 8.140000e-30 143.0
18 TraesCS5A01G004200 chr5D 79.032 248 21 17 6983 7201 1587492 1587737 2.930000e-29 141.0
19 TraesCS5A01G004200 chr5D 82.787 122 1 9 903 1024 7031214 7031113 2.990000e-14 91.6
20 TraesCS5A01G004200 chrUn 88.510 2202 132 47 5057 7210 65429580 65431708 0.000000e+00 2553.0
21 TraesCS5A01G004200 chrUn 89.887 1236 73 28 1986 3194 65426681 65427891 0.000000e+00 1543.0
22 TraesCS5A01G004200 chrUn 95.639 665 24 1 4295 4954 65428923 65429587 0.000000e+00 1062.0
23 TraesCS5A01G004200 chrUn 94.534 622 29 3 3212 3828 65427876 65428497 0.000000e+00 955.0
24 TraesCS5A01G004200 chrUn 79.515 742 67 31 6128 6832 146275919 146276612 4.280000e-122 449.0
25 TraesCS5A01G004200 chrUn 95.273 275 9 1 1291 1561 65426056 65426330 4.310000e-117 433.0
26 TraesCS5A01G004200 chrUn 83.696 460 24 22 899 1337 65425536 65425965 3.410000e-103 387.0
27 TraesCS5A01G004200 chrUn 92.126 254 13 2 3929 4175 65428630 65428883 1.240000e-92 351.0
28 TraesCS5A01G004200 chrUn 82.482 274 38 7 7197 7466 65431783 65432050 1.690000e-56 231.0
29 TraesCS5A01G004200 chrUn 88.776 196 5 4 1560 1755 65426364 65426542 2.830000e-54 224.0
30 TraesCS5A01G004200 chrUn 86.567 201 24 3 7219 7416 122419185 122418985 1.320000e-52 219.0
31 TraesCS5A01G004200 chrUn 80.412 194 15 3 6983 7154 122419504 122419312 8.200000e-25 126.0
32 TraesCS5A01G004200 chr1A 98.235 793 10 2 1 790 206226381 206227172 0.000000e+00 1384.0
33 TraesCS5A01G004200 chr1A 97.987 795 14 2 1 793 201879395 201878601 0.000000e+00 1378.0
34 TraesCS5A01G004200 chr1A 98.101 790 15 0 1 790 245141867 245142656 0.000000e+00 1376.0
35 TraesCS5A01G004200 chr1A 98.104 791 12 3 1 790 215803987 215804775 0.000000e+00 1375.0
36 TraesCS5A01G004200 chr1A 97.985 794 11 3 1 790 232800569 232801361 0.000000e+00 1373.0
37 TraesCS5A01G004200 chr1A 90.991 111 8 1 789 897 216580773 216580883 1.750000e-31 148.0
38 TraesCS5A01G004200 chr6A 97.870 798 12 2 1 793 312151337 312150540 0.000000e+00 1375.0
39 TraesCS5A01G004200 chr4D 76.684 935 168 43 2263 3172 12460006 12460915 2.540000e-129 473.0
40 TraesCS5A01G004200 chr4D 87.075 147 19 0 1988 2134 12459746 12459892 4.830000e-37 167.0
41 TraesCS5A01G004200 chr4D 81.000 200 38 0 5732 5931 12463465 12463664 8.090000e-35 159.0
42 TraesCS5A01G004200 chr4D 87.778 90 11 0 5241 5330 12462942 12463031 1.070000e-18 106.0
43 TraesCS5A01G004200 chr4A 77.415 735 126 27 2261 2968 590185337 590184616 1.220000e-107 401.0
44 TraesCS5A01G004200 chr4A 77.748 373 59 16 5239 5598 590114276 590113915 2.850000e-49 207.0
45 TraesCS5A01G004200 chr4A 80.412 194 38 0 5738 5931 590113802 590113609 1.750000e-31 148.0
46 TraesCS5A01G004200 chr4A 80.000 200 40 0 5732 5931 590181904 590181705 1.750000e-31 148.0
47 TraesCS5A01G004200 chr4A 88.043 92 11 0 5239 5330 590182400 590182309 8.260000e-20 110.0
48 TraesCS5A01G004200 chr4B 85.887 248 35 0 4579 4826 23011354 23011107 1.670000e-66 265.0
49 TraesCS5A01G004200 chr4B 77.019 483 92 12 5738 6208 22734070 22733595 7.750000e-65 259.0
50 TraesCS5A01G004200 chr4B 76.268 493 98 16 5732 6209 23010198 23009710 2.170000e-60 244.0
51 TraesCS5A01G004200 chr4B 94.505 91 5 0 1458 1548 660120276 660120186 2.930000e-29 141.0
52 TraesCS5A01G004200 chr7A 93.846 130 8 0 1428 1557 96570438 96570309 6.160000e-46 196.0
53 TraesCS5A01G004200 chr7D 93.077 130 9 0 1428 1557 93791602 93791473 2.870000e-44 191.0
54 TraesCS5A01G004200 chr7B 93.077 130 9 0 1428 1557 47003574 47003445 2.870000e-44 191.0
55 TraesCS5A01G004200 chr7B 96.875 96 3 0 4994 5089 11439020 11439115 2.250000e-35 161.0
56 TraesCS5A01G004200 chr3A 96.875 96 3 0 4994 5089 11851851 11851946 2.250000e-35 161.0
57 TraesCS5A01G004200 chr3A 91.589 107 7 1 789 893 20541160 20541266 6.290000e-31 147.0
58 TraesCS5A01G004200 chr2D 96.875 96 3 0 4994 5089 220629259 220629354 2.250000e-35 161.0
59 TraesCS5A01G004200 chr2B 96.875 96 3 0 4994 5089 73978959 73979054 2.250000e-35 161.0
60 TraesCS5A01G004200 chr2B 93.269 104 5 1 789 890 323196383 323196486 1.350000e-32 152.0
61 TraesCS5A01G004200 chr1D 96.875 96 3 0 4994 5089 4547597 4547502 2.250000e-35 161.0
62 TraesCS5A01G004200 chr2A 90.991 111 7 2 789 896 210400389 210400499 6.290000e-31 147.0
63 TraesCS5A01G004200 chr2A 89.167 120 10 2 789 905 336373441 336373560 6.290000e-31 147.0
64 TraesCS5A01G004200 chr2A 90.351 114 8 2 789 900 339067840 339067952 6.290000e-31 147.0
65 TraesCS5A01G004200 chr5B 77.256 277 35 8 6953 7201 509856066 509855790 3.790000e-28 137.0
66 TraesCS5A01G004200 chr5B 84.615 78 9 3 1296 1371 702243819 702243743 3.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G004200 chr5A 2892817 2900601 7784 True 14377.000000 14377 100.000000 1 7785 1 chr5A.!!$R1 7784
1 TraesCS5A01G004200 chr5A 2970633 2978899 8266 True 4038.333333 6252 99.416333 1 6713 3 chr5A.!!$R6 6712
2 TraesCS5A01G004200 chr5A 2985075 2985867 792 True 1404.000000 1404 98.613000 1 793 1 chr5A.!!$R3 792
3 TraesCS5A01G004200 chr5A 2906457 2907249 792 True 1393.000000 1393 98.361000 1 793 1 chr5A.!!$R2 792
4 TraesCS5A01G004200 chr5D 7013669 7019971 6302 True 1151.571429 3683 90.002000 899 7210 7 chr5D.!!$R3 6311
5 TraesCS5A01G004200 chrUn 65425536 65432050 6514 False 859.888889 2553 90.102556 899 7466 9 chrUn.!!$F2 6567
6 TraesCS5A01G004200 chrUn 146275919 146276612 693 False 449.000000 449 79.515000 6128 6832 1 chrUn.!!$F1 704
7 TraesCS5A01G004200 chr1A 206226381 206227172 791 False 1384.000000 1384 98.235000 1 790 1 chr1A.!!$F1 789
8 TraesCS5A01G004200 chr1A 201878601 201879395 794 True 1378.000000 1378 97.987000 1 793 1 chr1A.!!$R1 792
9 TraesCS5A01G004200 chr1A 245141867 245142656 789 False 1376.000000 1376 98.101000 1 790 1 chr1A.!!$F5 789
10 TraesCS5A01G004200 chr1A 215803987 215804775 788 False 1375.000000 1375 98.104000 1 790 1 chr1A.!!$F2 789
11 TraesCS5A01G004200 chr1A 232800569 232801361 792 False 1373.000000 1373 97.985000 1 790 1 chr1A.!!$F4 789
12 TraesCS5A01G004200 chr6A 312150540 312151337 797 True 1375.000000 1375 97.870000 1 793 1 chr6A.!!$R1 792
13 TraesCS5A01G004200 chr4D 12459746 12463664 3918 False 226.250000 473 83.134250 1988 5931 4 chr4D.!!$F1 3943
14 TraesCS5A01G004200 chr4A 590181705 590185337 3632 True 219.666667 401 81.819333 2261 5931 3 chr4A.!!$R2 3670
15 TraesCS5A01G004200 chr4B 23009710 23011354 1644 True 254.500000 265 81.077500 4579 6209 2 chr4B.!!$R3 1630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 496 2.036475 GGATAGAGCGATTGCCAGAGAA 59.964 50.000 0.0 0.0 44.31 2.87 F
3181 5163 1.275291 CTTGTTGAGGTAAGGCGAGGA 59.725 52.381 0.0 0.0 0.00 3.71 F
3182 5164 1.568504 TGTTGAGGTAAGGCGAGGAT 58.431 50.000 0.0 0.0 0.00 3.24 F
5346 7686 2.182516 ACAATCCCTCTACCTCCCTG 57.817 55.000 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2746 4657 2.425592 CCGTCAGAACCTGCACCA 59.574 61.111 0.00 0.0 0.00 4.17 R
5152 7492 4.670221 GCGAAACTTCAGTGCTTAAGATGG 60.670 45.833 6.67 0.0 0.00 3.51 R
5961 8365 2.880890 GCTTTTCTCCTGAAGCAGTTCA 59.119 45.455 3.43 0.0 45.74 3.18 R
7081 9615 0.030235 CATCGCCATGCACTGAATGG 59.970 55.000 11.50 11.5 46.29 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
493 496 2.036475 GGATAGAGCGATTGCCAGAGAA 59.964 50.000 0.00 0.00 44.31 2.87
3178 5160 3.927555 CCTTGTTGAGGTAAGGCGA 57.072 52.632 0.00 0.00 40.95 5.54
3179 5161 1.726853 CCTTGTTGAGGTAAGGCGAG 58.273 55.000 0.00 0.00 40.95 5.03
3180 5162 1.676014 CCTTGTTGAGGTAAGGCGAGG 60.676 57.143 0.00 0.00 40.95 4.63
3181 5163 1.275291 CTTGTTGAGGTAAGGCGAGGA 59.725 52.381 0.00 0.00 0.00 3.71
3182 5164 1.568504 TGTTGAGGTAAGGCGAGGAT 58.431 50.000 0.00 0.00 0.00 3.24
3183 5165 2.742348 TGTTGAGGTAAGGCGAGGATA 58.258 47.619 0.00 0.00 0.00 2.59
3184 5166 3.305720 TGTTGAGGTAAGGCGAGGATAT 58.694 45.455 0.00 0.00 0.00 1.63
3185 5167 3.709653 TGTTGAGGTAAGGCGAGGATATT 59.290 43.478 0.00 0.00 0.00 1.28
3186 5168 4.897076 TGTTGAGGTAAGGCGAGGATATTA 59.103 41.667 0.00 0.00 0.00 0.98
3187 5169 5.221382 TGTTGAGGTAAGGCGAGGATATTAC 60.221 44.000 0.00 0.00 0.00 1.89
3188 5170 4.737578 TGAGGTAAGGCGAGGATATTACT 58.262 43.478 0.00 0.00 0.00 2.24
3189 5171 5.145564 TGAGGTAAGGCGAGGATATTACTT 58.854 41.667 0.00 0.00 0.00 2.24
3190 5172 5.010719 TGAGGTAAGGCGAGGATATTACTTG 59.989 44.000 0.00 0.00 0.00 3.16
3191 5173 5.145564 AGGTAAGGCGAGGATATTACTTGA 58.854 41.667 0.00 0.00 0.00 3.02
3192 5174 5.601313 AGGTAAGGCGAGGATATTACTTGAA 59.399 40.000 0.00 0.00 0.00 2.69
3193 5175 5.695363 GGTAAGGCGAGGATATTACTTGAAC 59.305 44.000 0.00 0.00 0.00 3.18
3194 5176 5.353394 AAGGCGAGGATATTACTTGAACA 57.647 39.130 0.00 0.00 0.00 3.18
3195 5177 5.353394 AGGCGAGGATATTACTTGAACAA 57.647 39.130 0.00 0.00 0.00 2.83
3196 5178 5.930135 AGGCGAGGATATTACTTGAACAAT 58.070 37.500 0.00 0.00 0.00 2.71
3197 5179 5.992217 AGGCGAGGATATTACTTGAACAATC 59.008 40.000 0.00 0.00 0.00 2.67
3198 5180 5.992217 GGCGAGGATATTACTTGAACAATCT 59.008 40.000 0.00 0.00 0.00 2.40
3199 5181 6.146347 GGCGAGGATATTACTTGAACAATCTC 59.854 42.308 0.00 0.00 0.00 2.75
3200 5182 6.129062 GCGAGGATATTACTTGAACAATCTCG 60.129 42.308 0.00 0.00 0.00 4.04
3201 5183 7.139392 CGAGGATATTACTTGAACAATCTCGA 58.861 38.462 0.00 0.00 0.00 4.04
3202 5184 7.648112 CGAGGATATTACTTGAACAATCTCGAA 59.352 37.037 0.00 0.00 0.00 3.71
3203 5185 9.314321 GAGGATATTACTTGAACAATCTCGAAA 57.686 33.333 0.00 0.00 0.00 3.46
3204 5186 9.667107 AGGATATTACTTGAACAATCTCGAAAA 57.333 29.630 0.00 0.00 0.00 2.29
3480 5471 5.743636 AATGACTGTTTGCCCATATGTTT 57.256 34.783 1.24 0.00 0.00 2.83
3961 6041 7.178074 CGTTGGTCGACCTTAATTATTTCTTC 58.822 38.462 33.39 6.18 42.86 2.87
5346 7686 2.182516 ACAATCCCTCTACCTCCCTG 57.817 55.000 0.00 0.00 0.00 4.45
5730 8134 3.054878 ACTTACCGACGCTTACAACTTG 58.945 45.455 0.00 0.00 0.00 3.16
5961 8365 6.559157 CCTAACTCCCTGTCCCTCTTATAAAT 59.441 42.308 0.00 0.00 0.00 1.40
5962 8366 5.896073 ACTCCCTGTCCCTCTTATAAATG 57.104 43.478 0.00 0.00 0.00 2.32
5963 8367 5.538877 ACTCCCTGTCCCTCTTATAAATGA 58.461 41.667 0.00 0.00 0.00 2.57
5964 8368 5.970640 ACTCCCTGTCCCTCTTATAAATGAA 59.029 40.000 0.00 0.00 0.00 2.57
6718 9189 3.201708 AGCTTCATACTCTCAAAGGGCAT 59.798 43.478 0.00 0.00 0.00 4.40
6856 9358 5.278022 CCTCTTCTTTGCTGTGAACTTTACC 60.278 44.000 0.00 0.00 0.00 2.85
6929 9434 3.055021 TGCCGGTTGGTGATATAGTTTCA 60.055 43.478 1.90 0.00 37.67 2.69
7065 9599 0.178973 GTTTGTGGGGGCAAGGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
7081 9615 3.195825 AGGTAGTGTTAGCATGTGACCTC 59.804 47.826 0.00 0.00 30.08 3.85
7112 9646 2.708216 TGGCGATGAAATGCTTCCTA 57.292 45.000 0.00 0.00 0.00 2.94
7113 9647 2.997980 TGGCGATGAAATGCTTCCTAA 58.002 42.857 0.00 0.00 0.00 2.69
7119 9653 4.526970 GATGAAATGCTTCCTAACTGGGA 58.473 43.478 0.00 0.00 36.20 4.37
7158 9693 3.434309 AGCTGTGGTTTGGCTCAATATT 58.566 40.909 0.00 0.00 0.00 1.28
7217 9851 2.706339 AGTGCTTCATGGAGATGTCC 57.294 50.000 4.75 0.83 44.24 4.02
7241 9875 9.258826 TCCATCACATAACATTTTGTTTTTGAG 57.741 29.630 0.00 0.00 41.45 3.02
7251 9885 8.918961 ACATTTTGTTTTTGAGTCGAAATACA 57.081 26.923 6.37 10.40 0.00 2.29
7257 9891 2.665649 TGAGTCGAAATACACCGCAT 57.334 45.000 0.00 0.00 0.00 4.73
7258 9892 3.786516 TGAGTCGAAATACACCGCATA 57.213 42.857 0.00 0.00 0.00 3.14
7264 9898 4.565564 GTCGAAATACACCGCATAGAGTTT 59.434 41.667 0.00 0.00 0.00 2.66
7270 9904 1.135972 CACCGCATAGAGTTTGTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
7302 9936 7.943079 TCTTTTGAGAATCCATTTGCTATCA 57.057 32.000 0.00 0.00 0.00 2.15
7303 9937 7.993101 TCTTTTGAGAATCCATTTGCTATCAG 58.007 34.615 0.00 0.00 0.00 2.90
7304 9938 7.613022 TCTTTTGAGAATCCATTTGCTATCAGT 59.387 33.333 0.00 0.00 0.00 3.41
7305 9939 6.932356 TTGAGAATCCATTTGCTATCAGTC 57.068 37.500 0.00 0.00 0.00 3.51
7306 9940 5.052481 TGAGAATCCATTTGCTATCAGTCG 58.948 41.667 0.00 0.00 0.00 4.18
7307 9941 3.812053 AGAATCCATTTGCTATCAGTCGC 59.188 43.478 0.00 0.00 0.00 5.19
7309 9943 0.583438 CCATTTGCTATCAGTCGCCG 59.417 55.000 0.00 0.00 0.00 6.46
7310 9944 1.570813 CATTTGCTATCAGTCGCCGA 58.429 50.000 0.00 0.00 0.00 5.54
7312 9946 2.309528 TTTGCTATCAGTCGCCGATT 57.690 45.000 0.00 0.00 0.00 3.34
7313 9947 1.852942 TTGCTATCAGTCGCCGATTC 58.147 50.000 0.00 0.00 0.00 2.52
7314 9948 0.032130 TGCTATCAGTCGCCGATTCC 59.968 55.000 0.00 0.00 0.00 3.01
7315 9949 0.667792 GCTATCAGTCGCCGATTCCC 60.668 60.000 0.00 0.00 0.00 3.97
7316 9950 0.038159 CTATCAGTCGCCGATTCCCC 60.038 60.000 0.00 0.00 0.00 4.81
7318 9952 3.833645 CAGTCGCCGATTCCCCGA 61.834 66.667 0.00 0.00 0.00 5.14
7319 9953 2.838225 AGTCGCCGATTCCCCGAT 60.838 61.111 0.00 0.00 33.24 4.18
7320 9954 2.661866 GTCGCCGATTCCCCGATG 60.662 66.667 0.00 0.00 33.24 3.84
7321 9955 2.835895 TCGCCGATTCCCCGATGA 60.836 61.111 0.00 0.00 0.00 2.92
7326 9960 1.681264 GCCGATTCCCCGATGATTTTT 59.319 47.619 0.00 0.00 0.00 1.94
7327 9961 2.287608 GCCGATTCCCCGATGATTTTTC 60.288 50.000 0.00 0.00 0.00 2.29
7329 9963 3.569701 CCGATTCCCCGATGATTTTTCAT 59.430 43.478 0.00 0.00 0.00 2.57
7331 9965 4.275689 CGATTCCCCGATGATTTTTCATGA 59.724 41.667 0.00 0.00 0.00 3.07
7338 9972 6.036300 CCCCGATGATTTTTCATGAACATTTG 59.964 38.462 7.89 5.54 0.00 2.32
7340 9974 6.812656 CCGATGATTTTTCATGAACATTTGGA 59.187 34.615 7.89 0.00 0.00 3.53
7346 9980 9.352784 GATTTTTCATGAACATTTGGACGAATA 57.647 29.630 7.89 0.00 0.00 1.75
7348 9982 8.741101 TTTTCATGAACATTTGGACGAATAAG 57.259 30.769 7.89 0.00 0.00 1.73
7360 9994 4.189231 GGACGAATAAGCACCAACATACT 58.811 43.478 0.00 0.00 0.00 2.12
7361 9995 4.034048 GGACGAATAAGCACCAACATACTG 59.966 45.833 0.00 0.00 0.00 2.74
7363 9997 4.870426 ACGAATAAGCACCAACATACTGAG 59.130 41.667 0.00 0.00 0.00 3.35
7373 10007 2.479566 ACATACTGAGCCCACACAAG 57.520 50.000 0.00 0.00 0.00 3.16
7382 10016 1.414919 AGCCCACACAAGTCGAACTAA 59.585 47.619 0.00 0.00 0.00 2.24
7384 10018 2.415512 GCCCACACAAGTCGAACTAATC 59.584 50.000 0.00 0.00 0.00 1.75
7391 10025 7.085116 CACACAAGTCGAACTAATCTAGAAGT 58.915 38.462 0.00 0.00 0.00 3.01
7394 10028 8.640291 CACAAGTCGAACTAATCTAGAAGTTTC 58.360 37.037 10.45 4.56 36.10 2.78
7404 10038 8.455682 ACTAATCTAGAAGTTTCTGAAGAGTCG 58.544 37.037 0.00 0.00 38.19 4.18
7407 10041 4.264460 AGAAGTTTCTGAAGAGTCGCAT 57.736 40.909 0.00 0.00 35.89 4.73
7413 10047 3.223423 TCTGAAGAGTCGCATGAGTTC 57.777 47.619 0.00 0.00 0.00 3.01
7438 10072 1.588674 CGCACCAGGTGACAACTTAA 58.411 50.000 24.96 0.00 35.23 1.85
7439 10073 1.944024 CGCACCAGGTGACAACTTAAA 59.056 47.619 24.96 0.00 35.23 1.52
7446 10080 4.097892 CCAGGTGACAACTTAAAAGCAACT 59.902 41.667 0.00 0.00 0.00 3.16
7475 10109 9.819267 AGCAGAGTACCAATACTAATAAAAGAC 57.181 33.333 0.00 0.00 41.98 3.01
7476 10110 9.819267 GCAGAGTACCAATACTAATAAAAGACT 57.181 33.333 0.00 0.00 41.98 3.24
7487 10121 7.698506 ACTAATAAAAGACTACCAAAAGGGC 57.301 36.000 0.00 0.00 42.05 5.19
7488 10122 7.467650 ACTAATAAAAGACTACCAAAAGGGCT 58.532 34.615 0.00 0.00 42.05 5.19
7489 10123 8.608598 ACTAATAAAAGACTACCAAAAGGGCTA 58.391 33.333 0.00 0.00 42.05 3.93
7490 10124 7.698506 AATAAAAGACTACCAAAAGGGCTAC 57.301 36.000 0.00 0.00 42.05 3.58
7491 10125 3.715638 AAGACTACCAAAAGGGCTACC 57.284 47.619 0.00 0.00 42.05 3.18
7509 10143 1.997669 CCTGCAGGTTACTCGAGAAC 58.002 55.000 25.53 17.62 0.00 3.01
7510 10144 1.272490 CCTGCAGGTTACTCGAGAACA 59.728 52.381 25.53 0.18 0.00 3.18
7511 10145 2.288825 CCTGCAGGTTACTCGAGAACAA 60.289 50.000 25.53 7.10 0.00 2.83
7512 10146 2.989840 CTGCAGGTTACTCGAGAACAAG 59.010 50.000 21.68 14.47 0.00 3.16
7513 10147 1.727335 GCAGGTTACTCGAGAACAAGC 59.273 52.381 21.68 19.23 0.00 4.01
7514 10148 2.866460 GCAGGTTACTCGAGAACAAGCA 60.866 50.000 21.68 0.00 31.98 3.91
7515 10149 2.989840 CAGGTTACTCGAGAACAAGCAG 59.010 50.000 21.68 11.91 0.00 4.24
7516 10150 2.891580 AGGTTACTCGAGAACAAGCAGA 59.108 45.455 21.68 0.00 0.00 4.26
7517 10151 3.321111 AGGTTACTCGAGAACAAGCAGAA 59.679 43.478 21.68 0.00 0.00 3.02
7518 10152 4.056050 GGTTACTCGAGAACAAGCAGAAA 58.944 43.478 21.68 0.00 0.00 2.52
7519 10153 4.084485 GGTTACTCGAGAACAAGCAGAAAC 60.084 45.833 21.68 6.87 0.00 2.78
7520 10154 3.179443 ACTCGAGAACAAGCAGAAACA 57.821 42.857 21.68 0.00 0.00 2.83
7521 10155 3.531538 ACTCGAGAACAAGCAGAAACAA 58.468 40.909 21.68 0.00 0.00 2.83
7522 10156 4.130118 ACTCGAGAACAAGCAGAAACAAT 58.870 39.130 21.68 0.00 0.00 2.71
7523 10157 4.576463 ACTCGAGAACAAGCAGAAACAATT 59.424 37.500 21.68 0.00 0.00 2.32
7524 10158 5.758296 ACTCGAGAACAAGCAGAAACAATTA 59.242 36.000 21.68 0.00 0.00 1.40
7525 10159 6.260050 ACTCGAGAACAAGCAGAAACAATTAA 59.740 34.615 21.68 0.00 0.00 1.40
7526 10160 7.041098 ACTCGAGAACAAGCAGAAACAATTAAT 60.041 33.333 21.68 0.00 0.00 1.40
7527 10161 8.317891 TCGAGAACAAGCAGAAACAATTAATA 57.682 30.769 0.00 0.00 0.00 0.98
7528 10162 8.946085 TCGAGAACAAGCAGAAACAATTAATAT 58.054 29.630 0.00 0.00 0.00 1.28
7529 10163 9.559958 CGAGAACAAGCAGAAACAATTAATATT 57.440 29.630 0.00 0.00 0.00 1.28
7558 10192 9.913310 TTAAGATTATTCCATCCATGTACAACA 57.087 29.630 0.00 0.00 0.00 3.33
7559 10193 8.821686 AAGATTATTCCATCCATGTACAACAA 57.178 30.769 0.00 0.00 0.00 2.83
7560 10194 8.821686 AGATTATTCCATCCATGTACAACAAA 57.178 30.769 0.00 0.00 0.00 2.83
7561 10195 8.906867 AGATTATTCCATCCATGTACAACAAAG 58.093 33.333 0.00 0.00 0.00 2.77
7562 10196 8.821686 ATTATTCCATCCATGTACAACAAAGA 57.178 30.769 0.00 0.00 0.00 2.52
7563 10197 8.821686 TTATTCCATCCATGTACAACAAAGAT 57.178 30.769 0.00 0.00 0.00 2.40
7564 10198 9.913310 TTATTCCATCCATGTACAACAAAGATA 57.087 29.630 0.00 0.00 0.00 1.98
7566 10200 8.450578 TTCCATCCATGTACAACAAAGATATC 57.549 34.615 0.00 0.00 0.00 1.63
7567 10201 7.805163 TCCATCCATGTACAACAAAGATATCT 58.195 34.615 0.00 0.00 0.00 1.98
7568 10202 8.274322 TCCATCCATGTACAACAAAGATATCTT 58.726 33.333 12.37 12.37 37.91 2.40
7569 10203 8.347771 CCATCCATGTACAACAAAGATATCTTG 58.652 37.037 18.61 14.21 36.12 3.02
7570 10204 8.896744 CATCCATGTACAACAAAGATATCTTGT 58.103 33.333 18.61 14.61 36.12 3.16
7571 10205 8.862325 TCCATGTACAACAAAGATATCTTGTT 57.138 30.769 18.61 18.97 36.12 2.83
7572 10206 9.952030 TCCATGTACAACAAAGATATCTTGTTA 57.048 29.630 18.61 9.91 36.12 2.41
7573 10207 9.988350 CCATGTACAACAAAGATATCTTGTTAC 57.012 33.333 18.61 17.34 36.12 2.50
7576 10210 9.549078 TGTACAACAAAGATATCTTGTTACACA 57.451 29.630 18.61 21.32 36.12 3.72
7579 10213 8.023128 ACAACAAAGATATCTTGTTACACATGC 58.977 33.333 18.61 0.00 36.12 4.06
7580 10214 7.088589 ACAAAGATATCTTGTTACACATGCC 57.911 36.000 18.61 0.00 36.12 4.40
7581 10215 6.886459 ACAAAGATATCTTGTTACACATGCCT 59.114 34.615 18.61 0.00 36.12 4.75
7582 10216 6.932356 AAGATATCTTGTTACACATGCCTG 57.068 37.500 17.26 0.00 34.38 4.85
7583 10217 5.371526 AGATATCTTGTTACACATGCCTGG 58.628 41.667 0.00 0.00 0.00 4.45
7584 10218 3.719268 ATCTTGTTACACATGCCTGGA 57.281 42.857 0.00 0.00 0.00 3.86
7585 10219 2.778299 TCTTGTTACACATGCCTGGAC 58.222 47.619 0.00 0.00 0.00 4.02
7586 10220 2.371841 TCTTGTTACACATGCCTGGACT 59.628 45.455 0.00 0.00 0.00 3.85
7587 10221 2.183478 TGTTACACATGCCTGGACTG 57.817 50.000 0.00 0.00 0.00 3.51
7588 10222 1.271325 TGTTACACATGCCTGGACTGG 60.271 52.381 0.00 0.00 0.00 4.00
7589 10223 1.003118 GTTACACATGCCTGGACTGGA 59.997 52.381 0.00 0.00 0.00 3.86
7590 10224 1.583556 TACACATGCCTGGACTGGAT 58.416 50.000 0.00 0.00 0.00 3.41
7591 10225 0.700564 ACACATGCCTGGACTGGATT 59.299 50.000 0.00 0.00 0.00 3.01
7592 10226 1.100510 CACATGCCTGGACTGGATTG 58.899 55.000 0.00 0.00 0.00 2.67
7593 10227 0.700564 ACATGCCTGGACTGGATTGT 59.299 50.000 0.00 0.00 0.00 2.71
7594 10228 1.076024 ACATGCCTGGACTGGATTGTT 59.924 47.619 0.00 0.00 0.00 2.83
7595 10229 2.173519 CATGCCTGGACTGGATTGTTT 58.826 47.619 0.00 0.00 0.00 2.83
7596 10230 1.909700 TGCCTGGACTGGATTGTTTC 58.090 50.000 0.00 0.00 0.00 2.78
7597 10231 1.425066 TGCCTGGACTGGATTGTTTCT 59.575 47.619 0.00 0.00 0.00 2.52
7598 10232 2.158475 TGCCTGGACTGGATTGTTTCTT 60.158 45.455 0.00 0.00 0.00 2.52
7599 10233 3.073798 TGCCTGGACTGGATTGTTTCTTA 59.926 43.478 0.00 0.00 0.00 2.10
7600 10234 3.440522 GCCTGGACTGGATTGTTTCTTAC 59.559 47.826 0.00 0.00 0.00 2.34
7601 10235 4.651778 CCTGGACTGGATTGTTTCTTACA 58.348 43.478 0.00 0.00 34.12 2.41
7602 10236 4.455877 CCTGGACTGGATTGTTTCTTACAC 59.544 45.833 0.00 0.00 36.21 2.90
7603 10237 5.042463 TGGACTGGATTGTTTCTTACACA 57.958 39.130 0.00 0.00 36.21 3.72
7604 10238 5.630121 TGGACTGGATTGTTTCTTACACAT 58.370 37.500 0.00 0.00 36.21 3.21
7605 10239 6.068010 TGGACTGGATTGTTTCTTACACATT 58.932 36.000 0.00 0.00 36.21 2.71
7606 10240 7.227873 TGGACTGGATTGTTTCTTACACATTA 58.772 34.615 0.00 0.00 36.21 1.90
7607 10241 7.888021 TGGACTGGATTGTTTCTTACACATTAT 59.112 33.333 0.00 0.00 36.21 1.28
7608 10242 8.398665 GGACTGGATTGTTTCTTACACATTATC 58.601 37.037 0.00 0.00 36.21 1.75
7609 10243 9.167311 GACTGGATTGTTTCTTACACATTATCT 57.833 33.333 0.00 0.00 36.21 1.98
7610 10244 9.167311 ACTGGATTGTTTCTTACACATTATCTC 57.833 33.333 0.00 0.00 36.21 2.75
7611 10245 9.388506 CTGGATTGTTTCTTACACATTATCTCT 57.611 33.333 0.00 0.00 36.21 3.10
7612 10246 9.383519 TGGATTGTTTCTTACACATTATCTCTC 57.616 33.333 0.00 0.00 36.21 3.20
7613 10247 9.606631 GGATTGTTTCTTACACATTATCTCTCT 57.393 33.333 0.00 0.00 36.21 3.10
7616 10250 8.777865 TGTTTCTTACACATTATCTCTCTTGG 57.222 34.615 0.00 0.00 0.00 3.61
7617 10251 8.593679 TGTTTCTTACACATTATCTCTCTTGGA 58.406 33.333 0.00 0.00 0.00 3.53
7618 10252 9.436957 GTTTCTTACACATTATCTCTCTTGGAA 57.563 33.333 0.00 0.00 0.00 3.53
7619 10253 9.436957 TTTCTTACACATTATCTCTCTTGGAAC 57.563 33.333 0.00 0.00 0.00 3.62
7620 10254 7.556844 TCTTACACATTATCTCTCTTGGAACC 58.443 38.462 0.00 0.00 0.00 3.62
7621 10255 4.759782 ACACATTATCTCTCTTGGAACCG 58.240 43.478 0.00 0.00 0.00 4.44
7622 10256 3.557595 CACATTATCTCTCTTGGAACCGC 59.442 47.826 0.00 0.00 0.00 5.68
7623 10257 3.197766 ACATTATCTCTCTTGGAACCGCA 59.802 43.478 0.00 0.00 0.00 5.69
7624 10258 3.973206 TTATCTCTCTTGGAACCGCAA 57.027 42.857 0.00 0.00 0.00 4.85
7625 10259 2.393271 ATCTCTCTTGGAACCGCAAG 57.607 50.000 0.00 0.00 0.00 4.01
7626 10260 1.338107 TCTCTCTTGGAACCGCAAGA 58.662 50.000 0.00 0.00 43.02 3.02
7627 10261 1.691976 TCTCTCTTGGAACCGCAAGAA 59.308 47.619 0.00 0.00 37.04 2.52
7628 10262 2.104111 TCTCTCTTGGAACCGCAAGAAA 59.896 45.455 0.00 0.00 37.04 2.52
7629 10263 3.077359 CTCTCTTGGAACCGCAAGAAAT 58.923 45.455 0.00 0.00 37.04 2.17
7630 10264 3.486383 TCTCTTGGAACCGCAAGAAATT 58.514 40.909 0.00 0.00 37.04 1.82
7631 10265 3.888930 TCTCTTGGAACCGCAAGAAATTT 59.111 39.130 0.00 0.00 37.04 1.82
7632 10266 4.340950 TCTCTTGGAACCGCAAGAAATTTT 59.659 37.500 0.00 0.00 37.04 1.82
7633 10267 4.616953 TCTTGGAACCGCAAGAAATTTTC 58.383 39.130 0.66 0.66 43.02 2.29
7634 10268 3.378911 TGGAACCGCAAGAAATTTTCC 57.621 42.857 5.52 0.00 43.02 3.13
7635 10269 2.036604 TGGAACCGCAAGAAATTTTCCC 59.963 45.455 5.52 0.00 43.02 3.97
7636 10270 2.299013 GGAACCGCAAGAAATTTTCCCT 59.701 45.455 5.52 0.00 43.02 4.20
7637 10271 3.575630 GAACCGCAAGAAATTTTCCCTC 58.424 45.455 5.52 0.00 43.02 4.30
7638 10272 1.539827 ACCGCAAGAAATTTTCCCTCG 59.460 47.619 5.52 6.55 43.02 4.63
7639 10273 1.810151 CCGCAAGAAATTTTCCCTCGA 59.190 47.619 5.52 0.00 43.02 4.04
7640 10274 2.159517 CCGCAAGAAATTTTCCCTCGAG 60.160 50.000 5.13 5.13 43.02 4.04
7641 10275 2.484264 CGCAAGAAATTTTCCCTCGAGT 59.516 45.455 12.31 0.00 43.02 4.18
7642 10276 3.667960 CGCAAGAAATTTTCCCTCGAGTG 60.668 47.826 12.31 0.00 43.02 3.51
7643 10277 3.826466 CAAGAAATTTTCCCTCGAGTGC 58.174 45.455 12.31 0.00 0.00 4.40
7644 10278 3.140325 AGAAATTTTCCCTCGAGTGCA 57.860 42.857 12.31 0.00 0.00 4.57
7645 10279 3.486383 AGAAATTTTCCCTCGAGTGCAA 58.514 40.909 12.31 0.00 0.00 4.08
7646 10280 3.888930 AGAAATTTTCCCTCGAGTGCAAA 59.111 39.130 12.31 3.15 0.00 3.68
7647 10281 4.524328 AGAAATTTTCCCTCGAGTGCAAAT 59.476 37.500 12.31 5.67 0.00 2.32
7648 10282 4.440839 AATTTTCCCTCGAGTGCAAATC 57.559 40.909 12.31 0.00 0.00 2.17
7649 10283 2.859165 TTTCCCTCGAGTGCAAATCT 57.141 45.000 12.31 0.00 0.00 2.40
7650 10284 2.386661 TTCCCTCGAGTGCAAATCTC 57.613 50.000 12.31 0.00 0.00 2.75
7651 10285 1.561643 TCCCTCGAGTGCAAATCTCT 58.438 50.000 12.31 0.00 0.00 3.10
7652 10286 1.478510 TCCCTCGAGTGCAAATCTCTC 59.521 52.381 12.31 0.00 33.23 3.20
7653 10287 1.472376 CCCTCGAGTGCAAATCTCTCC 60.472 57.143 12.31 0.00 33.02 3.71
7654 10288 1.480137 CCTCGAGTGCAAATCTCTCCT 59.520 52.381 12.31 0.00 33.02 3.69
7655 10289 2.481104 CCTCGAGTGCAAATCTCTCCTC 60.481 54.545 12.31 0.00 33.02 3.71
7656 10290 1.478510 TCGAGTGCAAATCTCTCCTCC 59.521 52.381 0.00 0.00 33.02 4.30
7657 10291 1.480137 CGAGTGCAAATCTCTCCTCCT 59.520 52.381 0.00 0.00 33.02 3.69
7658 10292 2.093764 CGAGTGCAAATCTCTCCTCCTT 60.094 50.000 0.00 0.00 33.02 3.36
7659 10293 3.530535 GAGTGCAAATCTCTCCTCCTTC 58.469 50.000 0.00 0.00 31.00 3.46
7660 10294 2.909006 AGTGCAAATCTCTCCTCCTTCA 59.091 45.455 0.00 0.00 0.00 3.02
7661 10295 3.328931 AGTGCAAATCTCTCCTCCTTCAA 59.671 43.478 0.00 0.00 0.00 2.69
7662 10296 4.018597 AGTGCAAATCTCTCCTCCTTCAAT 60.019 41.667 0.00 0.00 0.00 2.57
7663 10297 4.335037 GTGCAAATCTCTCCTCCTTCAATC 59.665 45.833 0.00 0.00 0.00 2.67
7664 10298 4.019051 TGCAAATCTCTCCTCCTTCAATCA 60.019 41.667 0.00 0.00 0.00 2.57
7665 10299 4.575645 GCAAATCTCTCCTCCTTCAATCAG 59.424 45.833 0.00 0.00 0.00 2.90
7666 10300 5.124645 CAAATCTCTCCTCCTTCAATCAGG 58.875 45.833 0.00 0.00 34.86 3.86
7667 10301 3.765432 TCTCTCCTCCTTCAATCAGGA 57.235 47.619 0.00 0.00 41.00 3.86
7672 10306 2.990977 TCCTTCAATCAGGAGGCGA 58.009 52.632 0.00 0.00 38.11 5.54
7673 10307 1.275666 TCCTTCAATCAGGAGGCGAA 58.724 50.000 0.00 0.00 38.11 4.70
7674 10308 1.628340 TCCTTCAATCAGGAGGCGAAA 59.372 47.619 0.00 0.00 38.11 3.46
7675 10309 2.039746 TCCTTCAATCAGGAGGCGAAAA 59.960 45.455 0.00 0.00 38.11 2.29
7676 10310 2.819608 CCTTCAATCAGGAGGCGAAAAA 59.180 45.455 0.00 0.00 35.71 1.94
7694 10328 4.341366 AAAAACAGCTTCCATTCAAGGG 57.659 40.909 0.00 0.00 0.00 3.95
7695 10329 2.978156 AACAGCTTCCATTCAAGGGA 57.022 45.000 0.00 0.00 0.00 4.20
7696 10330 2.978156 ACAGCTTCCATTCAAGGGAA 57.022 45.000 2.96 2.96 41.98 3.97
7697 10331 3.463048 ACAGCTTCCATTCAAGGGAAT 57.537 42.857 3.47 0.00 43.16 3.01
7698 10332 4.591321 ACAGCTTCCATTCAAGGGAATA 57.409 40.909 3.47 0.00 43.16 1.75
7699 10333 4.273318 ACAGCTTCCATTCAAGGGAATAC 58.727 43.478 3.47 0.00 43.16 1.89
7700 10334 4.018050 ACAGCTTCCATTCAAGGGAATACT 60.018 41.667 3.47 2.37 43.16 2.12
7701 10335 4.337555 CAGCTTCCATTCAAGGGAATACTG 59.662 45.833 15.65 15.65 43.16 2.74
7702 10336 4.228210 AGCTTCCATTCAAGGGAATACTGA 59.772 41.667 3.47 0.00 43.16 3.41
7703 10337 4.336713 GCTTCCATTCAAGGGAATACTGAC 59.663 45.833 3.47 0.00 43.16 3.51
7704 10338 5.749462 CTTCCATTCAAGGGAATACTGACT 58.251 41.667 3.47 0.00 43.16 3.41
7705 10339 5.102953 TCCATTCAAGGGAATACTGACTG 57.897 43.478 0.00 0.00 41.78 3.51
7706 10340 3.629398 CCATTCAAGGGAATACTGACTGC 59.371 47.826 0.00 0.00 41.78 4.40
7707 10341 4.521146 CATTCAAGGGAATACTGACTGCT 58.479 43.478 0.00 0.00 41.78 4.24
7708 10342 3.616956 TCAAGGGAATACTGACTGCTG 57.383 47.619 0.00 0.00 0.00 4.41
7709 10343 2.906389 TCAAGGGAATACTGACTGCTGT 59.094 45.455 0.00 0.00 0.00 4.40
7710 10344 4.093743 TCAAGGGAATACTGACTGCTGTA 58.906 43.478 0.00 0.00 33.74 2.74
7711 10345 4.716784 TCAAGGGAATACTGACTGCTGTAT 59.283 41.667 0.00 0.00 39.81 2.29
7712 10346 5.897250 TCAAGGGAATACTGACTGCTGTATA 59.103 40.000 0.00 0.00 37.94 1.47
7713 10347 6.554982 TCAAGGGAATACTGACTGCTGTATAT 59.445 38.462 0.00 0.00 37.94 0.86
7714 10348 7.071196 TCAAGGGAATACTGACTGCTGTATATT 59.929 37.037 0.00 2.09 37.94 1.28
7715 10349 7.380423 AGGGAATACTGACTGCTGTATATTT 57.620 36.000 0.00 0.00 37.94 1.40
7716 10350 7.220030 AGGGAATACTGACTGCTGTATATTTG 58.780 38.462 0.00 0.00 37.94 2.32
7717 10351 6.428159 GGGAATACTGACTGCTGTATATTTGG 59.572 42.308 0.00 0.00 37.94 3.28
7718 10352 6.073003 GGAATACTGACTGCTGTATATTTGGC 60.073 42.308 0.00 0.00 37.94 4.52
7719 10353 4.494091 ACTGACTGCTGTATATTTGGCT 57.506 40.909 0.00 0.00 0.00 4.75
7720 10354 4.848357 ACTGACTGCTGTATATTTGGCTT 58.152 39.130 0.00 0.00 0.00 4.35
7721 10355 4.637534 ACTGACTGCTGTATATTTGGCTTG 59.362 41.667 0.00 0.00 0.00 4.01
7722 10356 4.842574 TGACTGCTGTATATTTGGCTTGA 58.157 39.130 0.00 0.00 0.00 3.02
7723 10357 5.439721 TGACTGCTGTATATTTGGCTTGAT 58.560 37.500 0.00 0.00 0.00 2.57
7724 10358 5.528690 TGACTGCTGTATATTTGGCTTGATC 59.471 40.000 0.00 0.00 0.00 2.92
7725 10359 5.439721 ACTGCTGTATATTTGGCTTGATCA 58.560 37.500 0.00 0.00 0.00 2.92
7726 10360 5.530171 ACTGCTGTATATTTGGCTTGATCAG 59.470 40.000 0.00 0.00 0.00 2.90
7727 10361 5.683681 TGCTGTATATTTGGCTTGATCAGA 58.316 37.500 0.00 0.00 0.00 3.27
7728 10362 5.761726 TGCTGTATATTTGGCTTGATCAGAG 59.238 40.000 0.00 0.00 0.00 3.35
7729 10363 5.762218 GCTGTATATTTGGCTTGATCAGAGT 59.238 40.000 0.00 0.00 0.00 3.24
7730 10364 6.931281 GCTGTATATTTGGCTTGATCAGAGTA 59.069 38.462 0.00 0.00 0.00 2.59
7731 10365 7.442364 GCTGTATATTTGGCTTGATCAGAGTAA 59.558 37.037 0.00 0.00 0.00 2.24
7732 10366 9.330063 CTGTATATTTGGCTTGATCAGAGTAAA 57.670 33.333 0.00 4.37 0.00 2.01
7733 10367 9.851686 TGTATATTTGGCTTGATCAGAGTAAAT 57.148 29.630 0.00 10.03 0.00 1.40
7737 10371 7.523293 TTTGGCTTGATCAGAGTAAATTTCA 57.477 32.000 0.00 0.00 0.00 2.69
7738 10372 6.748333 TGGCTTGATCAGAGTAAATTTCAG 57.252 37.500 0.00 0.00 0.00 3.02
7739 10373 5.124457 TGGCTTGATCAGAGTAAATTTCAGC 59.876 40.000 0.00 0.00 0.00 4.26
7740 10374 5.356470 GGCTTGATCAGAGTAAATTTCAGCT 59.644 40.000 0.00 0.00 0.00 4.24
7741 10375 6.256686 GCTTGATCAGAGTAAATTTCAGCTG 58.743 40.000 7.63 7.63 0.00 4.24
7742 10376 5.808042 TGATCAGAGTAAATTTCAGCTGC 57.192 39.130 9.47 0.00 0.00 5.25
7743 10377 4.637534 TGATCAGAGTAAATTTCAGCTGCC 59.362 41.667 9.47 0.00 0.00 4.85
7744 10378 3.002791 TCAGAGTAAATTTCAGCTGCCG 58.997 45.455 9.47 0.00 0.00 5.69
7745 10379 1.740025 AGAGTAAATTTCAGCTGCCGC 59.260 47.619 9.47 0.00 0.00 6.53
7746 10380 0.447801 AGTAAATTTCAGCTGCCGCG 59.552 50.000 9.47 0.00 42.32 6.46
7747 10381 1.133946 GTAAATTTCAGCTGCCGCGC 61.134 55.000 9.47 0.00 42.32 6.86
7748 10382 1.581727 TAAATTTCAGCTGCCGCGCA 61.582 50.000 9.47 1.04 42.32 6.09
7758 10392 2.550487 TGCCGCGCAGTTAAAATCT 58.450 47.368 8.75 0.00 33.32 2.40
7759 10393 1.728068 TGCCGCGCAGTTAAAATCTA 58.272 45.000 8.75 0.00 33.32 1.98
7760 10394 2.285083 TGCCGCGCAGTTAAAATCTAT 58.715 42.857 8.75 0.00 33.32 1.98
7761 10395 2.286833 TGCCGCGCAGTTAAAATCTATC 59.713 45.455 8.75 0.00 33.32 2.08
7762 10396 2.286833 GCCGCGCAGTTAAAATCTATCA 59.713 45.455 8.75 0.00 0.00 2.15
7763 10397 3.242608 GCCGCGCAGTTAAAATCTATCAA 60.243 43.478 8.75 0.00 0.00 2.57
7764 10398 4.729458 GCCGCGCAGTTAAAATCTATCAAA 60.729 41.667 8.75 0.00 0.00 2.69
7765 10399 4.963953 CCGCGCAGTTAAAATCTATCAAAG 59.036 41.667 8.75 0.00 0.00 2.77
7766 10400 5.220586 CCGCGCAGTTAAAATCTATCAAAGA 60.221 40.000 8.75 0.00 39.02 2.52
7768 10402 6.355405 CGCGCAGTTAAAATCTATCAAAGATG 59.645 38.462 8.75 0.00 44.56 2.90
7769 10403 7.189512 GCGCAGTTAAAATCTATCAAAGATGT 58.810 34.615 0.30 0.00 44.56 3.06
7770 10404 7.164826 GCGCAGTTAAAATCTATCAAAGATGTG 59.835 37.037 0.30 0.00 44.56 3.21
7771 10405 8.390354 CGCAGTTAAAATCTATCAAAGATGTGA 58.610 33.333 0.00 0.00 44.56 3.58
7778 10412 5.746307 TCTATCAAAGATGTGATGCAAGC 57.254 39.130 0.00 0.00 38.69 4.01
7779 10413 2.905959 TCAAAGATGTGATGCAAGCG 57.094 45.000 0.00 0.00 0.00 4.68
7780 10414 1.135603 TCAAAGATGTGATGCAAGCGC 60.136 47.619 0.00 0.00 39.24 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2746 4657 2.425592 CCGTCAGAACCTGCACCA 59.574 61.111 0.00 0.00 0.00 4.17
3178 5160 9.667107 TTTTCGAGATTGTTCAAGTAATATCCT 57.333 29.630 0.00 0.00 0.00 3.24
3207 5189 9.077885 TGCAAGAGTTCAAGTAATATCCTTTTT 57.922 29.630 0.00 0.00 0.00 1.94
3208 5190 8.635765 TGCAAGAGTTCAAGTAATATCCTTTT 57.364 30.769 0.00 0.00 0.00 2.27
3209 5191 8.814038 ATGCAAGAGTTCAAGTAATATCCTTT 57.186 30.769 0.00 0.00 0.00 3.11
3210 5192 8.814038 AATGCAAGAGTTCAAGTAATATCCTT 57.186 30.769 0.00 0.00 0.00 3.36
3961 6041 8.134895 ACAACACATACCAAAAACAGATACAAG 58.865 33.333 0.00 0.00 0.00 3.16
5152 7492 4.670221 GCGAAACTTCAGTGCTTAAGATGG 60.670 45.833 6.67 0.00 0.00 3.51
5961 8365 2.880890 GCTTTTCTCCTGAAGCAGTTCA 59.119 45.455 3.43 0.00 45.74 3.18
5962 8366 3.550950 GCTTTTCTCCTGAAGCAGTTC 57.449 47.619 3.43 0.00 45.74 3.01
6718 9189 1.658114 CTTGACGACGGACTCCACA 59.342 57.895 0.00 0.00 0.00 4.17
6856 9358 1.202110 ACTACGCGGACGATTACAGTG 60.202 52.381 12.47 0.00 43.93 3.66
7065 9599 3.008923 TGAATGGAGGTCACATGCTAACA 59.991 43.478 0.00 0.00 0.00 2.41
7081 9615 0.030235 CATCGCCATGCACTGAATGG 59.970 55.000 11.50 11.50 46.29 3.16
7158 9693 1.134159 ACAAAAGCATGGCAGGCAAAA 60.134 42.857 27.04 0.00 0.00 2.44
7241 9875 3.703420 ACTCTATGCGGTGTATTTCGAC 58.297 45.455 0.00 0.00 0.00 4.20
7251 9885 1.156736 GCACACAAACTCTATGCGGT 58.843 50.000 0.00 0.00 0.00 5.68
7257 9891 5.368145 AGAGAAACATGCACACAAACTCTA 58.632 37.500 8.63 0.00 31.78 2.43
7258 9892 4.202441 AGAGAAACATGCACACAAACTCT 58.798 39.130 0.00 0.00 0.00 3.24
7264 9898 4.639755 TCTCAAAAGAGAAACATGCACACA 59.360 37.500 0.00 0.00 0.00 3.72
7270 9904 8.922676 CAAATGGATTCTCAAAAGAGAAACATG 58.077 33.333 19.85 12.05 43.44 3.21
7299 9933 2.822399 GGGGAATCGGCGACTGAT 59.178 61.111 13.76 0.00 0.00 2.90
7300 9934 3.833645 CGGGGAATCGGCGACTGA 61.834 66.667 13.76 0.00 0.00 3.41
7301 9935 3.151958 ATCGGGGAATCGGCGACTG 62.152 63.158 13.76 4.48 0.00 3.51
7302 9936 2.838225 ATCGGGGAATCGGCGACT 60.838 61.111 13.76 0.00 0.00 4.18
7303 9937 2.436087 ATCATCGGGGAATCGGCGAC 62.436 60.000 13.76 0.00 0.00 5.19
7304 9938 1.754380 AATCATCGGGGAATCGGCGA 61.754 55.000 13.87 13.87 0.00 5.54
7305 9939 0.884704 AAATCATCGGGGAATCGGCG 60.885 55.000 0.00 0.00 0.00 6.46
7306 9940 1.318576 AAAATCATCGGGGAATCGGC 58.681 50.000 0.00 0.00 0.00 5.54
7307 9941 2.948979 TGAAAAATCATCGGGGAATCGG 59.051 45.455 0.00 0.00 0.00 4.18
7309 9943 5.772825 TCATGAAAAATCATCGGGGAATC 57.227 39.130 0.00 0.00 0.00 2.52
7310 9944 5.421693 TGTTCATGAAAAATCATCGGGGAAT 59.578 36.000 10.35 0.00 0.00 3.01
7312 9946 4.339748 TGTTCATGAAAAATCATCGGGGA 58.660 39.130 10.35 0.00 0.00 4.81
7313 9947 4.717233 TGTTCATGAAAAATCATCGGGG 57.283 40.909 10.35 0.00 0.00 5.73
7314 9948 6.036300 CCAAATGTTCATGAAAAATCATCGGG 59.964 38.462 10.35 10.10 0.00 5.14
7315 9949 6.812656 TCCAAATGTTCATGAAAAATCATCGG 59.187 34.615 10.35 12.58 0.00 4.18
7316 9950 7.461807 CGTCCAAATGTTCATGAAAAATCATCG 60.462 37.037 10.35 5.30 0.00 3.84
7318 9952 7.377398 TCGTCCAAATGTTCATGAAAAATCAT 58.623 30.769 10.35 6.58 0.00 2.45
7319 9953 6.743110 TCGTCCAAATGTTCATGAAAAATCA 58.257 32.000 10.35 4.23 0.00 2.57
7320 9954 7.636259 TTCGTCCAAATGTTCATGAAAAATC 57.364 32.000 10.35 0.00 0.00 2.17
7321 9955 9.703892 TTATTCGTCCAAATGTTCATGAAAAAT 57.296 25.926 10.35 4.38 0.00 1.82
7326 9960 5.414144 TGCTTATTCGTCCAAATGTTCATGA 59.586 36.000 0.00 0.00 0.00 3.07
7327 9961 5.512788 GTGCTTATTCGTCCAAATGTTCATG 59.487 40.000 0.00 0.00 0.00 3.07
7329 9963 4.083003 GGTGCTTATTCGTCCAAATGTTCA 60.083 41.667 0.00 0.00 0.00 3.18
7331 9965 3.823873 TGGTGCTTATTCGTCCAAATGTT 59.176 39.130 0.00 0.00 0.00 2.71
7338 9972 4.034048 CAGTATGTTGGTGCTTATTCGTCC 59.966 45.833 0.00 0.00 0.00 4.79
7340 9974 4.827692 TCAGTATGTTGGTGCTTATTCGT 58.172 39.130 0.00 0.00 37.40 3.85
7346 9980 1.614317 GGGCTCAGTATGTTGGTGCTT 60.614 52.381 0.00 0.00 37.40 3.91
7348 9982 0.322456 TGGGCTCAGTATGTTGGTGC 60.322 55.000 0.00 0.00 37.40 5.01
7360 9994 0.531974 GTTCGACTTGTGTGGGCTCA 60.532 55.000 0.00 0.00 0.00 4.26
7361 9995 0.249911 AGTTCGACTTGTGTGGGCTC 60.250 55.000 0.00 0.00 0.00 4.70
7363 9997 1.873698 TTAGTTCGACTTGTGTGGGC 58.126 50.000 0.00 0.00 0.00 5.36
7373 10007 8.967552 TTCAGAAACTTCTAGATTAGTTCGAC 57.032 34.615 9.70 5.93 35.34 4.20
7382 10016 5.184096 TGCGACTCTTCAGAAACTTCTAGAT 59.816 40.000 0.00 0.00 35.34 1.98
7384 10018 4.799678 TGCGACTCTTCAGAAACTTCTAG 58.200 43.478 0.00 0.00 35.34 2.43
7391 10025 3.667497 ACTCATGCGACTCTTCAGAAA 57.333 42.857 0.00 0.00 0.00 2.52
7394 10028 2.094286 AGGAACTCATGCGACTCTTCAG 60.094 50.000 0.00 0.00 0.00 3.02
7431 10065 6.545504 TCTGCTAGAGTTGCTTTTAAGTTG 57.454 37.500 0.00 0.00 0.00 3.16
7461 10095 9.404848 GCCCTTTTGGTAGTCTTTTATTAGTAT 57.595 33.333 0.00 0.00 38.10 2.12
7462 10096 8.608598 AGCCCTTTTGGTAGTCTTTTATTAGTA 58.391 33.333 0.00 0.00 38.10 1.82
7464 10098 7.939784 AGCCCTTTTGGTAGTCTTTTATTAG 57.060 36.000 0.00 0.00 38.10 1.73
7465 10099 7.830697 GGTAGCCCTTTTGGTAGTCTTTTATTA 59.169 37.037 0.00 0.00 38.10 0.98
7466 10100 6.662234 GGTAGCCCTTTTGGTAGTCTTTTATT 59.338 38.462 0.00 0.00 38.10 1.40
7467 10101 6.011893 AGGTAGCCCTTTTGGTAGTCTTTTAT 60.012 38.462 0.00 0.00 38.13 1.40
7468 10102 5.311385 AGGTAGCCCTTTTGGTAGTCTTTTA 59.689 40.000 0.00 0.00 38.13 1.52
7469 10103 4.105858 AGGTAGCCCTTTTGGTAGTCTTTT 59.894 41.667 0.00 0.00 38.13 2.27
7470 10104 3.656264 AGGTAGCCCTTTTGGTAGTCTTT 59.344 43.478 0.00 0.00 38.13 2.52
7471 10105 3.009143 CAGGTAGCCCTTTTGGTAGTCTT 59.991 47.826 0.00 0.00 39.89 3.01
7472 10106 2.572104 CAGGTAGCCCTTTTGGTAGTCT 59.428 50.000 0.00 0.00 39.89 3.24
7473 10107 2.940083 GCAGGTAGCCCTTTTGGTAGTC 60.940 54.545 0.00 0.00 39.89 2.59
7474 10108 1.004394 GCAGGTAGCCCTTTTGGTAGT 59.996 52.381 0.00 0.00 39.89 2.73
7475 10109 1.004277 TGCAGGTAGCCCTTTTGGTAG 59.996 52.381 0.00 0.00 44.83 3.18
7476 10110 1.004277 CTGCAGGTAGCCCTTTTGGTA 59.996 52.381 5.57 0.00 44.83 3.25
7477 10111 0.251341 CTGCAGGTAGCCCTTTTGGT 60.251 55.000 5.57 0.00 44.83 3.67
7478 10112 0.967380 CCTGCAGGTAGCCCTTTTGG 60.967 60.000 25.53 0.00 44.83 3.28
7479 10113 2.571548 CCTGCAGGTAGCCCTTTTG 58.428 57.895 25.53 0.00 44.83 2.44
7490 10124 1.272490 TGTTCTCGAGTAACCTGCAGG 59.728 52.381 31.60 31.60 42.17 4.85
7491 10125 2.724977 TGTTCTCGAGTAACCTGCAG 57.275 50.000 13.13 6.78 0.00 4.41
7492 10126 2.866460 GCTTGTTCTCGAGTAACCTGCA 60.866 50.000 13.13 0.00 0.00 4.41
7493 10127 1.727335 GCTTGTTCTCGAGTAACCTGC 59.273 52.381 13.13 15.79 0.00 4.85
7494 10128 2.989840 CTGCTTGTTCTCGAGTAACCTG 59.010 50.000 13.13 11.03 0.00 4.00
7495 10129 2.891580 TCTGCTTGTTCTCGAGTAACCT 59.108 45.455 13.13 0.00 0.00 3.50
7496 10130 3.299340 TCTGCTTGTTCTCGAGTAACC 57.701 47.619 13.13 4.42 0.00 2.85
7497 10131 4.506654 TGTTTCTGCTTGTTCTCGAGTAAC 59.493 41.667 13.13 15.05 0.00 2.50
7498 10132 4.689071 TGTTTCTGCTTGTTCTCGAGTAA 58.311 39.130 13.13 5.90 0.00 2.24
7499 10133 4.316205 TGTTTCTGCTTGTTCTCGAGTA 57.684 40.909 13.13 0.00 0.00 2.59
7500 10134 3.179443 TGTTTCTGCTTGTTCTCGAGT 57.821 42.857 13.13 0.00 0.00 4.18
7501 10135 4.739046 ATTGTTTCTGCTTGTTCTCGAG 57.261 40.909 5.93 5.93 0.00 4.04
7502 10136 6.612247 TTAATTGTTTCTGCTTGTTCTCGA 57.388 33.333 0.00 0.00 0.00 4.04
7503 10137 9.559958 AATATTAATTGTTTCTGCTTGTTCTCG 57.440 29.630 0.00 0.00 0.00 4.04
7532 10166 9.913310 TGTTGTACATGGATGGAATAATCTTAA 57.087 29.630 0.00 0.00 0.00 1.85
7533 10167 9.913310 TTGTTGTACATGGATGGAATAATCTTA 57.087 29.630 0.00 0.00 0.00 2.10
7534 10168 8.821686 TTGTTGTACATGGATGGAATAATCTT 57.178 30.769 0.00 0.00 0.00 2.40
7535 10169 8.821686 TTTGTTGTACATGGATGGAATAATCT 57.178 30.769 0.00 0.00 0.00 2.40
7536 10170 8.902806 TCTTTGTTGTACATGGATGGAATAATC 58.097 33.333 0.00 0.00 0.00 1.75
7537 10171 8.821686 TCTTTGTTGTACATGGATGGAATAAT 57.178 30.769 0.00 0.00 0.00 1.28
7538 10172 8.821686 ATCTTTGTTGTACATGGATGGAATAA 57.178 30.769 0.00 0.00 0.00 1.40
7540 10174 9.071276 GATATCTTTGTTGTACATGGATGGAAT 57.929 33.333 0.00 0.00 0.00 3.01
7541 10175 8.274322 AGATATCTTTGTTGTACATGGATGGAA 58.726 33.333 0.00 0.00 0.00 3.53
7542 10176 7.805163 AGATATCTTTGTTGTACATGGATGGA 58.195 34.615 0.00 0.00 0.00 3.41
7543 10177 8.347771 CAAGATATCTTTGTTGTACATGGATGG 58.652 37.037 15.49 0.00 33.11 3.51
7544 10178 8.896744 ACAAGATATCTTTGTTGTACATGGATG 58.103 33.333 15.49 2.16 33.11 3.51
7545 10179 9.466497 AACAAGATATCTTTGTTGTACATGGAT 57.534 29.630 21.94 0.00 32.83 3.41
7546 10180 8.862325 AACAAGATATCTTTGTTGTACATGGA 57.138 30.769 21.94 0.00 32.83 3.41
7547 10181 9.988350 GTAACAAGATATCTTTGTTGTACATGG 57.012 33.333 26.49 13.01 32.83 3.66
7569 10203 1.003118 TCCAGTCCAGGCATGTGTAAC 59.997 52.381 0.00 0.00 37.35 2.50
7570 10204 1.357137 TCCAGTCCAGGCATGTGTAA 58.643 50.000 0.00 0.00 0.00 2.41
7571 10205 1.583556 ATCCAGTCCAGGCATGTGTA 58.416 50.000 0.00 0.00 0.00 2.90
7572 10206 0.700564 AATCCAGTCCAGGCATGTGT 59.299 50.000 0.00 0.00 0.00 3.72
7573 10207 1.100510 CAATCCAGTCCAGGCATGTG 58.899 55.000 0.00 0.00 0.00 3.21
7574 10208 0.700564 ACAATCCAGTCCAGGCATGT 59.299 50.000 0.00 0.00 0.00 3.21
7575 10209 1.843368 AACAATCCAGTCCAGGCATG 58.157 50.000 0.00 0.00 0.00 4.06
7576 10210 2.042162 AGAAACAATCCAGTCCAGGCAT 59.958 45.455 0.00 0.00 0.00 4.40
7577 10211 1.425066 AGAAACAATCCAGTCCAGGCA 59.575 47.619 0.00 0.00 0.00 4.75
7578 10212 2.206576 AGAAACAATCCAGTCCAGGC 57.793 50.000 0.00 0.00 0.00 4.85
7579 10213 4.455877 GTGTAAGAAACAATCCAGTCCAGG 59.544 45.833 0.00 0.00 40.63 4.45
7580 10214 5.063204 TGTGTAAGAAACAATCCAGTCCAG 58.937 41.667 0.00 0.00 40.63 3.86
7581 10215 5.042463 TGTGTAAGAAACAATCCAGTCCA 57.958 39.130 0.00 0.00 40.63 4.02
7582 10216 6.575162 AATGTGTAAGAAACAATCCAGTCC 57.425 37.500 0.00 0.00 40.63 3.85
7583 10217 9.167311 AGATAATGTGTAAGAAACAATCCAGTC 57.833 33.333 0.00 0.00 40.63 3.51
7584 10218 9.167311 GAGATAATGTGTAAGAAACAATCCAGT 57.833 33.333 0.00 0.00 40.63 4.00
7585 10219 9.388506 AGAGATAATGTGTAAGAAACAATCCAG 57.611 33.333 0.00 0.00 40.63 3.86
7586 10220 9.383519 GAGAGATAATGTGTAAGAAACAATCCA 57.616 33.333 0.00 0.00 40.63 3.41
7587 10221 9.606631 AGAGAGATAATGTGTAAGAAACAATCC 57.393 33.333 0.00 0.00 40.63 3.01
7590 10224 9.219603 CCAAGAGAGATAATGTGTAAGAAACAA 57.780 33.333 0.00 0.00 40.63 2.83
7591 10225 8.593679 TCCAAGAGAGATAATGTGTAAGAAACA 58.406 33.333 0.00 0.00 35.06 2.83
7592 10226 9.436957 TTCCAAGAGAGATAATGTGTAAGAAAC 57.563 33.333 0.00 0.00 0.00 2.78
7593 10227 9.436957 GTTCCAAGAGAGATAATGTGTAAGAAA 57.563 33.333 0.00 0.00 0.00 2.52
7594 10228 8.041323 GGTTCCAAGAGAGATAATGTGTAAGAA 58.959 37.037 0.00 0.00 0.00 2.52
7595 10229 7.556844 GGTTCCAAGAGAGATAATGTGTAAGA 58.443 38.462 0.00 0.00 0.00 2.10
7596 10230 6.477033 CGGTTCCAAGAGAGATAATGTGTAAG 59.523 42.308 0.00 0.00 0.00 2.34
7597 10231 6.338146 CGGTTCCAAGAGAGATAATGTGTAA 58.662 40.000 0.00 0.00 0.00 2.41
7598 10232 5.681437 GCGGTTCCAAGAGAGATAATGTGTA 60.681 44.000 0.00 0.00 0.00 2.90
7599 10233 4.759782 CGGTTCCAAGAGAGATAATGTGT 58.240 43.478 0.00 0.00 0.00 3.72
7600 10234 3.557595 GCGGTTCCAAGAGAGATAATGTG 59.442 47.826 0.00 0.00 0.00 3.21
7601 10235 3.197766 TGCGGTTCCAAGAGAGATAATGT 59.802 43.478 0.00 0.00 0.00 2.71
7602 10236 3.797039 TGCGGTTCCAAGAGAGATAATG 58.203 45.455 0.00 0.00 0.00 1.90
7603 10237 4.162320 TCTTGCGGTTCCAAGAGAGATAAT 59.838 41.667 0.81 0.00 44.49 1.28
7604 10238 3.513912 TCTTGCGGTTCCAAGAGAGATAA 59.486 43.478 0.81 0.00 44.49 1.75
7605 10239 3.096852 TCTTGCGGTTCCAAGAGAGATA 58.903 45.455 0.81 0.00 44.49 1.98
7606 10240 1.902508 TCTTGCGGTTCCAAGAGAGAT 59.097 47.619 0.81 0.00 44.49 2.75
7607 10241 1.338107 TCTTGCGGTTCCAAGAGAGA 58.662 50.000 0.81 0.00 44.49 3.10
7608 10242 3.914984 TCTTGCGGTTCCAAGAGAG 57.085 52.632 0.81 0.00 44.49 3.20
7611 10245 4.500716 GGAAAATTTCTTGCGGTTCCAAGA 60.501 41.667 5.65 0.81 46.85 3.02
7612 10246 3.740832 GGAAAATTTCTTGCGGTTCCAAG 59.259 43.478 5.65 0.00 42.73 3.61
7613 10247 3.493524 GGGAAAATTTCTTGCGGTTCCAA 60.494 43.478 5.65 0.00 36.96 3.53
7614 10248 2.036604 GGGAAAATTTCTTGCGGTTCCA 59.963 45.455 5.65 0.00 36.96 3.53
7615 10249 2.299013 AGGGAAAATTTCTTGCGGTTCC 59.701 45.455 5.65 0.00 34.93 3.62
7616 10250 3.575630 GAGGGAAAATTTCTTGCGGTTC 58.424 45.455 5.65 0.00 0.00 3.62
7617 10251 2.030274 CGAGGGAAAATTTCTTGCGGTT 60.030 45.455 5.65 0.00 0.00 4.44
7618 10252 1.539827 CGAGGGAAAATTTCTTGCGGT 59.460 47.619 5.65 0.00 0.00 5.68
7619 10253 1.810151 TCGAGGGAAAATTTCTTGCGG 59.190 47.619 5.65 0.00 0.00 5.69
7620 10254 2.484264 ACTCGAGGGAAAATTTCTTGCG 59.516 45.455 18.41 6.93 0.00 4.85
7621 10255 3.826466 CACTCGAGGGAAAATTTCTTGC 58.174 45.455 18.41 0.00 0.00 4.01
7622 10256 3.253188 TGCACTCGAGGGAAAATTTCTTG 59.747 43.478 21.51 2.64 0.00 3.02
7623 10257 3.486383 TGCACTCGAGGGAAAATTTCTT 58.514 40.909 21.51 0.00 0.00 2.52
7624 10258 3.140325 TGCACTCGAGGGAAAATTTCT 57.860 42.857 21.51 0.00 0.00 2.52
7625 10259 3.915437 TTGCACTCGAGGGAAAATTTC 57.085 42.857 21.51 0.00 0.00 2.17
7626 10260 4.524328 AGATTTGCACTCGAGGGAAAATTT 59.476 37.500 30.08 23.46 0.00 1.82
7627 10261 4.082125 AGATTTGCACTCGAGGGAAAATT 58.918 39.130 30.08 18.65 0.00 1.82
7628 10262 3.690460 AGATTTGCACTCGAGGGAAAAT 58.310 40.909 29.98 29.98 0.00 1.82
7629 10263 3.074412 GAGATTTGCACTCGAGGGAAAA 58.926 45.455 23.03 23.03 0.00 2.29
7630 10264 2.303022 AGAGATTTGCACTCGAGGGAAA 59.697 45.455 21.51 12.71 39.12 3.13
7631 10265 1.902508 AGAGATTTGCACTCGAGGGAA 59.097 47.619 21.51 4.38 39.12 3.97
7632 10266 1.478510 GAGAGATTTGCACTCGAGGGA 59.521 52.381 21.51 4.79 39.12 4.20
7633 10267 1.472376 GGAGAGATTTGCACTCGAGGG 60.472 57.143 18.41 15.12 39.12 4.30
7634 10268 1.480137 AGGAGAGATTTGCACTCGAGG 59.520 52.381 18.41 6.97 39.12 4.63
7635 10269 2.481104 GGAGGAGAGATTTGCACTCGAG 60.481 54.545 11.84 11.84 39.12 4.04
7636 10270 1.478510 GGAGGAGAGATTTGCACTCGA 59.521 52.381 0.00 0.00 39.12 4.04
7637 10271 1.480137 AGGAGGAGAGATTTGCACTCG 59.520 52.381 0.00 0.00 39.12 4.18
7638 10272 3.055530 TGAAGGAGGAGAGATTTGCACTC 60.056 47.826 0.00 0.00 33.96 3.51
7639 10273 2.909006 TGAAGGAGGAGAGATTTGCACT 59.091 45.455 0.00 0.00 0.00 4.40
7640 10274 3.340814 TGAAGGAGGAGAGATTTGCAC 57.659 47.619 0.00 0.00 0.00 4.57
7641 10275 4.019051 TGATTGAAGGAGGAGAGATTTGCA 60.019 41.667 0.00 0.00 0.00 4.08
7642 10276 4.521146 TGATTGAAGGAGGAGAGATTTGC 58.479 43.478 0.00 0.00 0.00 3.68
7643 10277 5.104610 TCCTGATTGAAGGAGGAGAGATTTG 60.105 44.000 0.00 0.00 41.60 2.32
7644 10278 5.035556 TCCTGATTGAAGGAGGAGAGATTT 58.964 41.667 0.00 0.00 41.60 2.17
7645 10279 4.629122 TCCTGATTGAAGGAGGAGAGATT 58.371 43.478 0.00 0.00 41.60 2.40
7646 10280 4.277788 TCCTGATTGAAGGAGGAGAGAT 57.722 45.455 0.00 0.00 41.60 2.75
7647 10281 3.765432 TCCTGATTGAAGGAGGAGAGA 57.235 47.619 0.00 0.00 41.60 3.10
7654 10288 1.275666 TTCGCCTCCTGATTGAAGGA 58.724 50.000 0.00 0.00 44.35 3.36
7655 10289 2.113860 TTTCGCCTCCTGATTGAAGG 57.886 50.000 0.00 0.00 38.84 3.46
7673 10307 3.966665 TCCCTTGAATGGAAGCTGTTTTT 59.033 39.130 0.00 0.00 0.00 1.94
7674 10308 3.575805 TCCCTTGAATGGAAGCTGTTTT 58.424 40.909 0.00 0.00 0.00 2.43
7675 10309 3.243359 TCCCTTGAATGGAAGCTGTTT 57.757 42.857 0.00 0.00 0.00 2.83
7676 10310 2.978156 TCCCTTGAATGGAAGCTGTT 57.022 45.000 0.00 0.00 0.00 3.16
7677 10311 2.978156 TTCCCTTGAATGGAAGCTGT 57.022 45.000 0.00 0.00 36.97 4.40
7678 10312 4.337555 CAGTATTCCCTTGAATGGAAGCTG 59.662 45.833 15.95 15.95 44.69 4.24
7679 10313 4.228210 TCAGTATTCCCTTGAATGGAAGCT 59.772 41.667 7.93 5.88 44.69 3.74
7680 10314 4.336713 GTCAGTATTCCCTTGAATGGAAGC 59.663 45.833 7.93 3.94 44.69 3.86
7681 10315 5.587844 CAGTCAGTATTCCCTTGAATGGAAG 59.412 44.000 7.93 0.00 44.69 3.46
7682 10316 5.500234 CAGTCAGTATTCCCTTGAATGGAA 58.500 41.667 4.41 4.41 45.50 3.53
7683 10317 4.626287 GCAGTCAGTATTCCCTTGAATGGA 60.626 45.833 3.80 0.00 41.31 3.41
7684 10318 3.629398 GCAGTCAGTATTCCCTTGAATGG 59.371 47.826 3.80 0.00 41.31 3.16
7685 10319 4.334759 CAGCAGTCAGTATTCCCTTGAATG 59.665 45.833 0.00 0.00 41.31 2.67
7686 10320 4.018960 ACAGCAGTCAGTATTCCCTTGAAT 60.019 41.667 0.00 0.00 43.56 2.57
7687 10321 3.327757 ACAGCAGTCAGTATTCCCTTGAA 59.672 43.478 0.00 0.00 34.33 2.69
7688 10322 2.906389 ACAGCAGTCAGTATTCCCTTGA 59.094 45.455 0.00 0.00 0.00 3.02
7689 10323 3.340814 ACAGCAGTCAGTATTCCCTTG 57.659 47.619 0.00 0.00 0.00 3.61
7690 10324 7.380423 AATATACAGCAGTCAGTATTCCCTT 57.620 36.000 0.00 0.00 33.34 3.95
7691 10325 7.220030 CAAATATACAGCAGTCAGTATTCCCT 58.780 38.462 0.00 0.00 33.34 4.20
7692 10326 6.428159 CCAAATATACAGCAGTCAGTATTCCC 59.572 42.308 0.00 0.00 33.34 3.97
7693 10327 6.073003 GCCAAATATACAGCAGTCAGTATTCC 60.073 42.308 0.00 0.00 33.34 3.01
7694 10328 6.708054 AGCCAAATATACAGCAGTCAGTATTC 59.292 38.462 0.00 0.00 33.34 1.75
7695 10329 6.595682 AGCCAAATATACAGCAGTCAGTATT 58.404 36.000 0.00 0.00 33.34 1.89
7696 10330 6.179906 AGCCAAATATACAGCAGTCAGTAT 57.820 37.500 0.00 0.00 35.31 2.12
7697 10331 5.614324 AGCCAAATATACAGCAGTCAGTA 57.386 39.130 0.00 0.00 0.00 2.74
7698 10332 4.494091 AGCCAAATATACAGCAGTCAGT 57.506 40.909 0.00 0.00 0.00 3.41
7699 10333 4.877823 TCAAGCCAAATATACAGCAGTCAG 59.122 41.667 0.00 0.00 0.00 3.51
7700 10334 4.842574 TCAAGCCAAATATACAGCAGTCA 58.157 39.130 0.00 0.00 0.00 3.41
7701 10335 5.528690 TGATCAAGCCAAATATACAGCAGTC 59.471 40.000 0.00 0.00 0.00 3.51
7702 10336 5.439721 TGATCAAGCCAAATATACAGCAGT 58.560 37.500 0.00 0.00 0.00 4.40
7703 10337 5.761726 TCTGATCAAGCCAAATATACAGCAG 59.238 40.000 0.00 0.00 0.00 4.24
7704 10338 5.683681 TCTGATCAAGCCAAATATACAGCA 58.316 37.500 0.00 0.00 0.00 4.41
7705 10339 5.762218 ACTCTGATCAAGCCAAATATACAGC 59.238 40.000 0.00 0.00 0.00 4.40
7706 10340 8.893219 TTACTCTGATCAAGCCAAATATACAG 57.107 34.615 0.00 0.00 0.00 2.74
7707 10341 9.851686 ATTTACTCTGATCAAGCCAAATATACA 57.148 29.630 0.00 0.00 0.00 2.29
7711 10345 9.241919 TGAAATTTACTCTGATCAAGCCAAATA 57.758 29.630 0.00 0.00 0.00 1.40
7712 10346 8.125978 TGAAATTTACTCTGATCAAGCCAAAT 57.874 30.769 0.00 5.02 0.00 2.32
7713 10347 7.523293 TGAAATTTACTCTGATCAAGCCAAA 57.477 32.000 0.00 3.12 0.00 3.28
7714 10348 6.349611 GCTGAAATTTACTCTGATCAAGCCAA 60.350 38.462 0.00 0.00 0.00 4.52
7715 10349 5.124457 GCTGAAATTTACTCTGATCAAGCCA 59.876 40.000 0.00 0.00 0.00 4.75
7716 10350 5.356470 AGCTGAAATTTACTCTGATCAAGCC 59.644 40.000 0.00 0.00 0.00 4.35
7717 10351 6.256686 CAGCTGAAATTTACTCTGATCAAGC 58.743 40.000 8.42 0.00 0.00 4.01
7718 10352 6.256686 GCAGCTGAAATTTACTCTGATCAAG 58.743 40.000 20.43 0.14 0.00 3.02
7719 10353 5.124457 GGCAGCTGAAATTTACTCTGATCAA 59.876 40.000 20.43 0.00 0.00 2.57
7720 10354 4.637534 GGCAGCTGAAATTTACTCTGATCA 59.362 41.667 20.43 0.00 0.00 2.92
7721 10355 4.260538 CGGCAGCTGAAATTTACTCTGATC 60.261 45.833 20.43 0.00 0.00 2.92
7722 10356 3.624861 CGGCAGCTGAAATTTACTCTGAT 59.375 43.478 20.43 0.00 0.00 2.90
7723 10357 3.002791 CGGCAGCTGAAATTTACTCTGA 58.997 45.455 20.43 0.00 0.00 3.27
7724 10358 2.476854 GCGGCAGCTGAAATTTACTCTG 60.477 50.000 20.43 2.02 41.01 3.35
7725 10359 1.740025 GCGGCAGCTGAAATTTACTCT 59.260 47.619 20.43 0.00 41.01 3.24
7726 10360 1.529826 CGCGGCAGCTGAAATTTACTC 60.530 52.381 20.43 0.00 42.32 2.59
7727 10361 0.447801 CGCGGCAGCTGAAATTTACT 59.552 50.000 20.43 0.00 42.32 2.24
7728 10362 1.133946 GCGCGGCAGCTGAAATTTAC 61.134 55.000 20.43 0.00 42.32 2.01
7729 10363 1.136565 GCGCGGCAGCTGAAATTTA 59.863 52.632 20.43 0.00 42.32 1.40
7730 10364 2.126346 GCGCGGCAGCTGAAATTT 60.126 55.556 20.43 0.00 42.32 1.82
7731 10365 3.364441 TGCGCGGCAGCTGAAATT 61.364 55.556 20.43 0.00 42.32 1.82
7740 10374 1.728068 TAGATTTTAACTGCGCGGCA 58.272 45.000 18.15 5.56 36.92 5.69
7741 10375 2.286833 TGATAGATTTTAACTGCGCGGC 59.713 45.455 18.15 0.00 0.00 6.53
7742 10376 4.530094 TTGATAGATTTTAACTGCGCGG 57.470 40.909 16.39 16.39 0.00 6.46
7743 10377 5.795766 TCTTTGATAGATTTTAACTGCGCG 58.204 37.500 0.00 0.00 0.00 6.86
7744 10378 7.164826 CACATCTTTGATAGATTTTAACTGCGC 59.835 37.037 0.00 0.00 41.78 6.09
7745 10379 8.390354 TCACATCTTTGATAGATTTTAACTGCG 58.610 33.333 0.00 0.00 41.78 5.18
7752 10386 7.705325 GCTTGCATCACATCTTTGATAGATTTT 59.295 33.333 0.00 0.00 41.78 1.82
7753 10387 7.201145 GCTTGCATCACATCTTTGATAGATTT 58.799 34.615 0.00 0.00 41.78 2.17
7754 10388 6.512903 CGCTTGCATCACATCTTTGATAGATT 60.513 38.462 0.00 0.00 41.78 2.40
7755 10389 5.049612 CGCTTGCATCACATCTTTGATAGAT 60.050 40.000 0.00 0.00 44.60 1.98
7756 10390 4.271776 CGCTTGCATCACATCTTTGATAGA 59.728 41.667 0.00 0.00 34.29 1.98
7757 10391 4.524749 CGCTTGCATCACATCTTTGATAG 58.475 43.478 0.00 0.00 34.29 2.08
7758 10392 3.242837 GCGCTTGCATCACATCTTTGATA 60.243 43.478 0.00 0.00 34.29 2.15
7759 10393 2.479049 GCGCTTGCATCACATCTTTGAT 60.479 45.455 0.00 0.00 36.62 2.57
7760 10394 1.135603 GCGCTTGCATCACATCTTTGA 60.136 47.619 0.00 0.00 38.92 2.69
7761 10395 1.265568 GCGCTTGCATCACATCTTTG 58.734 50.000 0.00 0.00 38.92 2.77
7762 10396 0.883153 TGCGCTTGCATCACATCTTT 59.117 45.000 9.73 0.00 45.56 2.52
7763 10397 2.558617 TGCGCTTGCATCACATCTT 58.441 47.368 9.73 0.00 45.56 2.40
7764 10398 4.306767 TGCGCTTGCATCACATCT 57.693 50.000 9.73 0.00 45.56 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.