Multiple sequence alignment - TraesCS5A01G004100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G004100 chr5A 100.000 2930 0 0 2786 5715 2872563 2869634 0.000000e+00 5411.0
1 TraesCS5A01G004100 chr5A 100.000 2515 0 0 1 2515 2875348 2872834 0.000000e+00 4645.0
2 TraesCS5A01G004100 chr5D 89.440 2642 146 56 3184 5715 7006456 7003838 0.000000e+00 3210.0
3 TraesCS5A01G004100 chr5D 85.094 1704 148 62 885 2515 7008635 7006965 0.000000e+00 1642.0
4 TraesCS5A01G004100 chr5D 97.733 397 9 0 2791 3187 7006877 7006481 0.000000e+00 684.0
5 TraesCS5A01G004100 chr5D 92.405 158 7 2 5359 5515 549240444 549240291 2.680000e-53 220.0
6 TraesCS5A01G004100 chr5D 91.139 158 9 2 5359 5515 262654346 262654193 5.800000e-50 209.0
7 TraesCS5A01G004100 chr5D 97.727 44 0 1 3701 3743 322904587 322904544 2.210000e-09 75.0
8 TraesCS5A01G004100 chrUn 90.299 1876 80 43 3803 5614 65435450 65437287 0.000000e+00 2362.0
9 TraesCS5A01G004100 chrUn 92.076 631 32 7 3187 3802 65434662 65435289 0.000000e+00 872.0
10 TraesCS5A01G004100 chrUn 86.282 780 78 17 1759 2515 65433231 65434004 0.000000e+00 821.0
11 TraesCS5A01G004100 chrUn 87.160 662 65 11 882 1538 65432504 65433150 0.000000e+00 734.0
12 TraesCS5A01G004100 chrUn 89.136 359 22 10 2 360 331034535 331034876 1.140000e-116 431.0
13 TraesCS5A01G004100 chrUn 94.758 248 13 0 2791 3038 65434093 65434340 2.500000e-103 387.0
14 TraesCS5A01G004100 chrUn 97.241 145 4 0 3043 3187 65434483 65434627 4.420000e-61 246.0
15 TraesCS5A01G004100 chrUn 91.139 158 8 3 5359 5515 28596662 28596814 5.800000e-50 209.0
16 TraesCS5A01G004100 chrUn 97.436 78 2 0 5638 5715 65437350 65437427 3.590000e-27 134.0
17 TraesCS5A01G004100 chrUn 100.000 37 0 0 3086 3122 65434449 65434485 1.030000e-07 69.4
18 TraesCS5A01G004100 chr3D 96.296 540 16 4 1 538 395995357 395994820 0.000000e+00 883.0
19 TraesCS5A01G004100 chr3D 91.139 158 9 2 5359 5515 510785288 510785135 5.800000e-50 209.0
20 TraesCS5A01G004100 chr3D 86.301 146 17 2 574 718 179288110 179288253 7.670000e-34 156.0
21 TraesCS5A01G004100 chr1A 95.933 541 17 4 1 538 261379054 261379592 0.000000e+00 872.0
22 TraesCS5A01G004100 chr1A 86.449 214 13 7 574 772 261379994 261380206 2.680000e-53 220.0
23 TraesCS5A01G004100 chr6D 89.219 538 30 4 2 538 465126796 465127306 0.000000e+00 647.0
24 TraesCS5A01G004100 chr6A 88.037 535 36 5 5 538 537700634 537700127 4.900000e-170 608.0
25 TraesCS5A01G004100 chr6B 88.493 365 26 11 5 369 709526751 709526403 1.470000e-115 427.0
26 TraesCS5A01G004100 chr7A 88.493 365 24 9 5 369 450001236 450000890 5.290000e-115 425.0
27 TraesCS5A01G004100 chr7A 88.579 359 23 9 2 360 209126061 209126401 2.460000e-113 420.0
28 TraesCS5A01G004100 chr7A 86.207 145 20 0 574 718 138754509 138754365 2.130000e-34 158.0
29 TraesCS5A01G004100 chr2B 88.493 365 24 9 5 369 639281229 639280883 5.290000e-115 425.0
30 TraesCS5A01G004100 chr2B 83.180 327 34 11 5275 5593 59917021 59916708 4.360000e-71 279.0
31 TraesCS5A01G004100 chr3B 88.579 359 22 10 2 360 238396608 238396947 8.860000e-113 418.0
32 TraesCS5A01G004100 chr3B 82.500 280 40 5 4560 4832 801589180 801589457 2.660000e-58 237.0
33 TraesCS5A01G004100 chr3B 91.139 158 9 2 5359 5515 165341299 165341146 5.800000e-50 209.0
34 TraesCS5A01G004100 chr3B 95.556 45 2 0 3700 3744 451117834 451117790 7.940000e-09 73.1
35 TraesCS5A01G004100 chr3B 76.056 142 20 10 574 712 472631338 472631468 1.720000e-05 62.1
36 TraesCS5A01G004100 chr4D 86.944 360 31 9 2 360 45336317 45336661 1.930000e-104 390.0
37 TraesCS5A01G004100 chr4D 89.431 123 12 1 596 718 215469110 215468989 2.760000e-33 154.0
38 TraesCS5A01G004100 chr4D 81.818 143 25 1 574 716 219417904 219417763 1.010000e-22 119.0
39 TraesCS5A01G004100 chr4A 85.912 362 37 6 8 369 554080199 554079852 1.940000e-99 374.0
40 TraesCS5A01G004100 chr4A 84.127 126 12 6 414 538 554079787 554079669 1.300000e-21 115.0
41 TraesCS5A01G004100 chr2D 91.772 158 8 2 5359 5515 336916878 336917031 1.250000e-51 215.0
42 TraesCS5A01G004100 chr2D 91.139 158 7 3 5359 5515 193917391 193917240 2.090000e-49 207.0
43 TraesCS5A01G004100 chr7D 91.139 158 9 2 5359 5515 47173227 47173380 5.800000e-50 209.0
44 TraesCS5A01G004100 chr7D 87.586 145 18 0 574 718 138510776 138510632 9.850000e-38 169.0
45 TraesCS5A01G004100 chr7D 100.000 39 0 0 3700 3738 550060176 550060214 7.940000e-09 73.1
46 TraesCS5A01G004100 chr7D 97.436 39 1 0 3700 3738 630954719 630954757 3.700000e-07 67.6
47 TraesCS5A01G004100 chr5B 88.356 146 16 1 574 718 97518831 97518686 2.120000e-39 174.0
48 TraesCS5A01G004100 chr2A 84.828 145 22 0 574 718 516305511 516305655 4.610000e-31 147.0
49 TraesCS5A01G004100 chr4B 100.000 40 0 0 3699 3738 389119247 389119208 2.210000e-09 75.0
50 TraesCS5A01G004100 chr7B 100.000 39 0 0 3700 3738 65144247 65144209 7.940000e-09 73.1
51 TraesCS5A01G004100 chr7B 97.500 40 1 0 3699 3738 553439604 553439565 1.030000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G004100 chr5A 2869634 2875348 5714 True 5028.000000 5411 100.000000 1 5715 2 chr5A.!!$R1 5714
1 TraesCS5A01G004100 chr5D 7003838 7008635 4797 True 1845.333333 3210 90.755667 885 5715 3 chr5D.!!$R4 4830
2 TraesCS5A01G004100 chrUn 65432504 65437427 4923 False 703.175000 2362 93.156500 882 5715 8 chrUn.!!$F3 4833
3 TraesCS5A01G004100 chr3D 395994820 395995357 537 True 883.000000 883 96.296000 1 538 1 chr3D.!!$R1 537
4 TraesCS5A01G004100 chr1A 261379054 261380206 1152 False 546.000000 872 91.191000 1 772 2 chr1A.!!$F1 771
5 TraesCS5A01G004100 chr6D 465126796 465127306 510 False 647.000000 647 89.219000 2 538 1 chr6D.!!$F1 536
6 TraesCS5A01G004100 chr6A 537700127 537700634 507 True 608.000000 608 88.037000 5 538 1 chr6A.!!$R1 533
7 TraesCS5A01G004100 chr4A 554079669 554080199 530 True 244.500000 374 85.019500 8 538 2 chr4A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 1291 0.101399 GAGGTCGTCGATCATGCTGT 59.899 55.0 8.47 0.00 0.00 4.40 F
1604 2072 0.036732 AATGCATGGTGTGTCCGTCT 59.963 50.0 0.00 0.00 39.52 4.18 F
1607 2075 0.037697 GCATGGTGTGTCCGTCTGTA 60.038 55.0 0.00 0.00 39.52 2.74 F
2401 2916 0.107831 AGGGTTACTCGTTTGCTGCA 59.892 50.0 0.00 0.00 0.00 4.41 F
3196 3884 0.459489 TGTCCCACAAGCTTGCAAAC 59.541 50.0 26.27 18.13 0.00 2.93 F
4111 4976 0.398696 TGTTGGGAAGGTATGTGCGT 59.601 50.0 0.00 0.00 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 2263 0.321671 TTTCTCGCAAGTCCCTGAGG 59.678 55.000 0.00 0.00 39.48 3.86 R
2425 2940 0.680921 TGAATAAGCTGGGCACAGGC 60.681 55.000 19.71 10.29 45.04 4.85 R
2902 3417 0.911769 TAGGTCCAGTCTGCAATGGG 59.088 55.000 11.28 0.48 37.19 4.00 R
3923 4787 2.093235 GGATTCAGCTACTGCAACCTCT 60.093 50.000 0.00 0.00 42.74 3.69 R
4487 5355 1.824852 ACCTGAAAATTGAATCCGCCC 59.175 47.619 0.00 0.00 0.00 6.13 R
5479 6466 0.037697 TTTCGTCGCCTGTAGCATGT 60.038 50.000 0.00 0.00 44.04 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 5.355350 GTCTGAAGTGTATGAATTTCCCCAG 59.645 44.000 0.00 0.00 0.00 4.45
324 326 6.373774 CCAAGCTTAGATTGTCAAGAAGTCAT 59.626 38.462 9.41 0.00 0.00 3.06
423 484 8.840833 TGTTGTACATTGTCTGAAGCTTTATA 57.159 30.769 0.00 0.00 0.00 0.98
524 589 1.002888 AGCATCTTGTCTGTCCTGGTG 59.997 52.381 0.00 0.00 0.00 4.17
538 603 4.409574 TGTCCTGGTGGTTGAGTAAGTTAA 59.590 41.667 0.00 0.00 34.23 2.01
640 1071 3.340814 AGTGCACGATCCATCTCTTTT 57.659 42.857 12.01 0.00 0.00 2.27
642 1073 3.438087 AGTGCACGATCCATCTCTTTTTG 59.562 43.478 12.01 0.00 0.00 2.44
646 1077 4.631813 GCACGATCCATCTCTTTTTGTACT 59.368 41.667 0.00 0.00 0.00 2.73
661 1092 2.577700 TGTACTGGTGCCGTTTCAAAT 58.422 42.857 0.00 0.00 0.00 2.32
667 1098 3.861840 TGGTGCCGTTTCAAATTGAAAA 58.138 36.364 21.03 4.76 46.53 2.29
693 1124 8.833231 TGAACACCTTAACAAAAACAAATTGA 57.167 26.923 0.00 0.00 0.00 2.57
699 1130 7.276878 ACCTTAACAAAAACAAATTGAAGACGG 59.723 33.333 0.00 0.00 0.00 4.79
702 1133 6.885735 ACAAAAACAAATTGAAGACGGAAG 57.114 33.333 0.00 0.00 0.00 3.46
718 1149 4.690122 ACGGAAGAAACCATCTATAACCG 58.310 43.478 0.00 0.00 41.71 4.44
720 1151 5.114081 CGGAAGAAACCATCTATAACCGTT 58.886 41.667 0.00 0.00 37.42 4.44
721 1152 5.583457 CGGAAGAAACCATCTATAACCGTTT 59.417 40.000 0.00 0.00 37.42 3.60
722 1153 6.238022 CGGAAGAAACCATCTATAACCGTTTC 60.238 42.308 0.00 0.00 41.55 2.78
723 1154 6.596497 GGAAGAAACCATCTATAACCGTTTCA 59.404 38.462 12.07 0.00 42.93 2.69
724 1155 7.120138 GGAAGAAACCATCTATAACCGTTTCAA 59.880 37.037 12.07 0.00 42.93 2.69
725 1156 7.989416 AGAAACCATCTATAACCGTTTCAAA 57.011 32.000 12.07 0.00 42.93 2.69
726 1157 8.575649 AGAAACCATCTATAACCGTTTCAAAT 57.424 30.769 12.07 0.00 42.93 2.32
728 1159 8.980143 AAACCATCTATAACCGTTTCAAATTG 57.020 30.769 0.00 0.00 0.00 2.32
729 1160 7.931578 ACCATCTATAACCGTTTCAAATTGA 57.068 32.000 0.00 0.00 0.00 2.57
730 1161 8.343168 ACCATCTATAACCGTTTCAAATTGAA 57.657 30.769 4.03 4.03 34.03 2.69
731 1162 8.458843 ACCATCTATAACCGTTTCAAATTGAAG 58.541 33.333 8.51 0.58 37.70 3.02
732 1163 8.673711 CCATCTATAACCGTTTCAAATTGAAGA 58.326 33.333 8.51 0.05 37.70 2.87
735 1166 8.726988 TCTATAACCGTTTCAAATTGAAGAAGG 58.273 33.333 17.94 17.94 37.70 3.46
768 1214 8.627403 AGACTAATAAGATGCCATGTTGAAATG 58.373 33.333 0.00 0.00 0.00 2.32
771 1217 9.806203 CTAATAAGATGCCATGTTGAAATGAAA 57.194 29.630 0.00 0.00 0.00 2.69
776 1222 9.504708 AAGATGCCATGTTGAAATGAAATAAAA 57.495 25.926 0.00 0.00 0.00 1.52
777 1223 9.158233 AGATGCCATGTTGAAATGAAATAAAAG 57.842 29.630 0.00 0.00 0.00 2.27
778 1224 9.153721 GATGCCATGTTGAAATGAAATAAAAGA 57.846 29.630 0.00 0.00 0.00 2.52
779 1225 8.537049 TGCCATGTTGAAATGAAATAAAAGAG 57.463 30.769 0.00 0.00 0.00 2.85
780 1226 7.603404 TGCCATGTTGAAATGAAATAAAAGAGG 59.397 33.333 0.00 0.00 0.00 3.69
781 1227 7.603784 GCCATGTTGAAATGAAATAAAAGAGGT 59.396 33.333 0.00 0.00 0.00 3.85
782 1228 9.143631 CCATGTTGAAATGAAATAAAAGAGGTC 57.856 33.333 0.00 0.00 0.00 3.85
783 1229 8.853345 CATGTTGAAATGAAATAAAAGAGGTCG 58.147 33.333 0.00 0.00 0.00 4.79
784 1230 8.160521 TGTTGAAATGAAATAAAAGAGGTCGA 57.839 30.769 0.00 0.00 0.00 4.20
785 1231 8.073768 TGTTGAAATGAAATAAAAGAGGTCGAC 58.926 33.333 7.13 7.13 0.00 4.20
786 1232 7.737972 TGAAATGAAATAAAAGAGGTCGACA 57.262 32.000 18.91 0.00 0.00 4.35
787 1233 8.160521 TGAAATGAAATAAAAGAGGTCGACAA 57.839 30.769 18.91 0.00 0.00 3.18
788 1234 8.289618 TGAAATGAAATAAAAGAGGTCGACAAG 58.710 33.333 18.91 0.00 0.00 3.16
789 1235 5.607119 TGAAATAAAAGAGGTCGACAAGC 57.393 39.130 18.91 5.66 0.00 4.01
790 1236 5.060506 TGAAATAAAAGAGGTCGACAAGCA 58.939 37.500 18.91 0.00 0.00 3.91
791 1237 5.529430 TGAAATAAAAGAGGTCGACAAGCAA 59.471 36.000 18.91 0.00 0.00 3.91
792 1238 6.038825 TGAAATAAAAGAGGTCGACAAGCAAA 59.961 34.615 18.91 0.00 0.00 3.68
793 1239 3.692791 AAAAGAGGTCGACAAGCAAAC 57.307 42.857 18.91 0.00 0.00 2.93
794 1240 1.594331 AAGAGGTCGACAAGCAAACC 58.406 50.000 18.91 0.00 0.00 3.27
795 1241 0.468226 AGAGGTCGACAAGCAAACCA 59.532 50.000 18.91 0.00 34.09 3.67
796 1242 1.134220 AGAGGTCGACAAGCAAACCAA 60.134 47.619 18.91 0.00 34.09 3.67
797 1243 1.673920 GAGGTCGACAAGCAAACCAAA 59.326 47.619 18.91 0.00 34.09 3.28
798 1244 1.404035 AGGTCGACAAGCAAACCAAAC 59.596 47.619 18.91 0.00 34.09 2.93
799 1245 1.133407 GGTCGACAAGCAAACCAAACA 59.867 47.619 18.91 0.00 0.00 2.83
800 1246 2.182014 GTCGACAAGCAAACCAAACAC 58.818 47.619 11.55 0.00 0.00 3.32
801 1247 1.133407 TCGACAAGCAAACCAAACACC 59.867 47.619 0.00 0.00 0.00 4.16
802 1248 1.135257 CGACAAGCAAACCAAACACCA 60.135 47.619 0.00 0.00 0.00 4.17
803 1249 2.267426 GACAAGCAAACCAAACACCAC 58.733 47.619 0.00 0.00 0.00 4.16
804 1250 1.620819 ACAAGCAAACCAAACACCACA 59.379 42.857 0.00 0.00 0.00 4.17
805 1251 2.037772 ACAAGCAAACCAAACACCACAA 59.962 40.909 0.00 0.00 0.00 3.33
806 1252 3.070018 CAAGCAAACCAAACACCACAAA 58.930 40.909 0.00 0.00 0.00 2.83
807 1253 2.971307 AGCAAACCAAACACCACAAAG 58.029 42.857 0.00 0.00 0.00 2.77
808 1254 2.564947 AGCAAACCAAACACCACAAAGA 59.435 40.909 0.00 0.00 0.00 2.52
809 1255 3.007398 AGCAAACCAAACACCACAAAGAA 59.993 39.130 0.00 0.00 0.00 2.52
810 1256 3.124466 GCAAACCAAACACCACAAAGAAC 59.876 43.478 0.00 0.00 0.00 3.01
811 1257 3.603158 AACCAAACACCACAAAGAACC 57.397 42.857 0.00 0.00 0.00 3.62
812 1258 2.530701 ACCAAACACCACAAAGAACCA 58.469 42.857 0.00 0.00 0.00 3.67
813 1259 2.232696 ACCAAACACCACAAAGAACCAC 59.767 45.455 0.00 0.00 0.00 4.16
814 1260 2.495669 CCAAACACCACAAAGAACCACT 59.504 45.455 0.00 0.00 0.00 4.00
815 1261 3.697045 CCAAACACCACAAAGAACCACTA 59.303 43.478 0.00 0.00 0.00 2.74
816 1262 4.202010 CCAAACACCACAAAGAACCACTAG 60.202 45.833 0.00 0.00 0.00 2.57
817 1263 2.572290 ACACCACAAAGAACCACTAGC 58.428 47.619 0.00 0.00 0.00 3.42
818 1264 2.092646 ACACCACAAAGAACCACTAGCA 60.093 45.455 0.00 0.00 0.00 3.49
819 1265 2.549754 CACCACAAAGAACCACTAGCAG 59.450 50.000 0.00 0.00 0.00 4.24
820 1266 1.537202 CCACAAAGAACCACTAGCAGC 59.463 52.381 0.00 0.00 0.00 5.25
821 1267 2.498167 CACAAAGAACCACTAGCAGCT 58.502 47.619 0.00 0.00 0.00 4.24
822 1268 2.481952 CACAAAGAACCACTAGCAGCTC 59.518 50.000 0.00 0.00 0.00 4.09
823 1269 2.079925 CAAAGAACCACTAGCAGCTCC 58.920 52.381 0.00 0.00 0.00 4.70
824 1270 1.650528 AAGAACCACTAGCAGCTCCT 58.349 50.000 0.00 0.00 0.00 3.69
825 1271 1.190643 AGAACCACTAGCAGCTCCTC 58.809 55.000 0.00 0.00 0.00 3.71
826 1272 0.179124 GAACCACTAGCAGCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
827 1273 0.612174 AACCACTAGCAGCTCCTCGA 60.612 55.000 0.00 0.00 0.00 4.04
828 1274 1.034838 ACCACTAGCAGCTCCTCGAG 61.035 60.000 5.13 5.13 0.00 4.04
829 1275 1.732917 CACTAGCAGCTCCTCGAGG 59.267 63.158 26.32 26.32 0.00 4.63
830 1276 1.034838 CACTAGCAGCTCCTCGAGGT 61.035 60.000 30.17 13.13 41.33 3.85
831 1277 0.750182 ACTAGCAGCTCCTCGAGGTC 60.750 60.000 30.17 21.97 38.40 3.85
832 1278 1.781025 CTAGCAGCTCCTCGAGGTCG 61.781 65.000 30.17 22.24 38.40 4.79
833 1279 2.538512 TAGCAGCTCCTCGAGGTCGT 62.539 60.000 30.17 13.33 38.40 4.34
834 1280 2.795297 CAGCTCCTCGAGGTCGTC 59.205 66.667 30.17 16.97 38.40 4.20
844 1290 2.878743 GAGGTCGTCGATCATGCTG 58.121 57.895 8.47 0.00 0.00 4.41
845 1291 0.101399 GAGGTCGTCGATCATGCTGT 59.899 55.000 8.47 0.00 0.00 4.40
846 1292 0.101399 AGGTCGTCGATCATGCTGTC 59.899 55.000 8.47 0.00 0.00 3.51
847 1293 0.101399 GGTCGTCGATCATGCTGTCT 59.899 55.000 0.00 0.00 0.00 3.41
848 1294 1.469940 GGTCGTCGATCATGCTGTCTT 60.470 52.381 0.00 0.00 0.00 3.01
849 1295 1.585668 GTCGTCGATCATGCTGTCTTG 59.414 52.381 0.00 0.00 0.00 3.02
850 1296 0.926155 CGTCGATCATGCTGTCTTGG 59.074 55.000 0.00 0.00 0.00 3.61
851 1297 1.293924 GTCGATCATGCTGTCTTGGG 58.706 55.000 0.00 0.00 0.00 4.12
852 1298 0.904649 TCGATCATGCTGTCTTGGGT 59.095 50.000 0.00 0.00 0.00 4.51
853 1299 2.107366 TCGATCATGCTGTCTTGGGTA 58.893 47.619 0.00 0.00 0.00 3.69
854 1300 2.159099 TCGATCATGCTGTCTTGGGTAC 60.159 50.000 0.00 0.00 0.00 3.34
883 1329 7.739498 TTTTGACCTAGAAAACCTACATGTC 57.261 36.000 0.00 0.00 0.00 3.06
884 1330 6.428083 TTGACCTAGAAAACCTACATGTCA 57.572 37.500 0.00 0.00 0.00 3.58
885 1331 6.428083 TGACCTAGAAAACCTACATGTCAA 57.572 37.500 0.00 0.00 29.57 3.18
886 1332 7.016153 TGACCTAGAAAACCTACATGTCAAT 57.984 36.000 0.00 0.00 29.57 2.57
887 1333 7.103641 TGACCTAGAAAACCTACATGTCAATC 58.896 38.462 0.00 0.00 29.57 2.67
926 1372 1.524961 CCGGCCCACACTATAGCAA 59.475 57.895 0.00 0.00 0.00 3.91
956 1402 2.025416 CCATTGGGTCCACACTATCCAA 60.025 50.000 0.00 0.00 41.07 3.53
959 1405 1.484653 TGGGTCCACACTATCCAATCG 59.515 52.381 0.00 0.00 0.00 3.34
984 1430 4.021925 GCGTCCAGCCTTCCACCT 62.022 66.667 0.00 0.00 40.81 4.00
1099 1548 2.757917 GCTGCTCCTCCTCGGTCT 60.758 66.667 0.00 0.00 0.00 3.85
1102 1551 2.043852 GCTCCTCCTCGGTCTCCA 60.044 66.667 0.00 0.00 0.00 3.86
1108 1557 2.218115 CTCCTCGGTCTCCACCTCCT 62.218 65.000 0.00 0.00 41.17 3.69
1163 1612 4.829588 GGTAACTACTGCTCGGCC 57.170 61.111 0.00 0.00 0.00 6.13
1164 1613 1.895238 GGTAACTACTGCTCGGCCA 59.105 57.895 2.24 0.00 0.00 5.36
1166 1615 0.801067 GTAACTACTGCTCGGCCACG 60.801 60.000 2.24 0.00 42.74 4.94
1167 1616 2.552585 TAACTACTGCTCGGCCACGC 62.553 60.000 2.24 4.67 40.69 5.34
1360 1811 0.175531 GGTACCAACCATGCCAATGC 59.824 55.000 7.15 0.00 45.98 3.56
1384 1835 6.704310 CCTTGATTTCCATTGGACTGAAAAT 58.296 36.000 4.45 1.93 32.29 1.82
1401 1855 6.372659 ACTGAAAATCTACTGCTATGGTGTTG 59.627 38.462 0.00 0.00 0.00 3.33
1453 1912 2.423898 GGTCAAGATCTCCGGCGGA 61.424 63.158 29.14 29.14 0.00 5.54
1512 1971 2.894919 GGTACGTGTACGCCCCAT 59.105 61.111 0.00 0.00 44.43 4.00
1523 1982 2.590007 GCCCCATACTCTGCTGCG 60.590 66.667 0.00 0.00 0.00 5.18
1526 1985 1.589993 CCCATACTCTGCTGCGTCG 60.590 63.158 0.00 0.00 0.00 5.12
1538 1997 1.662876 GCTGCGTCGATTGCTTTTCAA 60.663 47.619 12.89 0.00 39.32 2.69
1540 1999 3.236816 CTGCGTCGATTGCTTTTCAATT 58.763 40.909 12.89 0.00 44.95 2.32
1541 2000 2.979151 TGCGTCGATTGCTTTTCAATTG 59.021 40.909 12.89 0.00 44.95 2.32
1543 2002 2.979151 CGTCGATTGCTTTTCAATTGCA 59.021 40.909 0.00 0.00 44.95 4.08
1544 2003 3.609373 CGTCGATTGCTTTTCAATTGCAT 59.391 39.130 0.00 0.00 44.95 3.96
1546 2014 3.368539 TCGATTGCTTTTCAATTGCATGC 59.631 39.130 11.82 11.82 44.95 4.06
1547 2015 3.369756 CGATTGCTTTTCAATTGCATGCT 59.630 39.130 20.33 0.00 44.95 3.79
1551 2019 7.096424 ATTGCTTTTCAATTGCATGCTCTGC 62.096 40.000 20.33 10.17 42.48 4.26
1562 2030 1.287815 TGCTCTGCTGCATTGCAAC 59.712 52.632 21.49 9.02 42.83 4.17
1577 2045 1.905894 TGCAACTGTGGCCTAGACATA 59.094 47.619 13.53 0.00 0.00 2.29
1579 2047 2.874701 GCAACTGTGGCCTAGACATATG 59.125 50.000 13.53 0.00 0.00 1.78
1581 2049 2.402564 ACTGTGGCCTAGACATATGCT 58.597 47.619 13.53 3.84 0.00 3.79
1583 2051 3.576118 ACTGTGGCCTAGACATATGCTAG 59.424 47.826 19.26 19.26 36.06 3.42
1597 2065 1.753930 TGCTAGGAATGCATGGTGTG 58.246 50.000 0.00 0.00 35.31 3.82
1598 2066 1.004628 TGCTAGGAATGCATGGTGTGT 59.995 47.619 0.00 0.00 35.31 3.72
1599 2067 1.672881 GCTAGGAATGCATGGTGTGTC 59.327 52.381 0.00 0.00 0.00 3.67
1600 2068 2.292267 CTAGGAATGCATGGTGTGTCC 58.708 52.381 0.00 1.74 0.00 4.02
1601 2069 0.677731 AGGAATGCATGGTGTGTCCG 60.678 55.000 0.00 0.00 39.52 4.79
1602 2070 0.960364 GGAATGCATGGTGTGTCCGT 60.960 55.000 0.00 0.00 39.52 4.69
1603 2071 0.447801 GAATGCATGGTGTGTCCGTC 59.552 55.000 0.00 0.00 39.52 4.79
1604 2072 0.036732 AATGCATGGTGTGTCCGTCT 59.963 50.000 0.00 0.00 39.52 4.18
1605 2073 0.674581 ATGCATGGTGTGTCCGTCTG 60.675 55.000 0.00 0.00 39.52 3.51
1606 2074 1.301716 GCATGGTGTGTCCGTCTGT 60.302 57.895 0.00 0.00 39.52 3.41
1607 2075 0.037697 GCATGGTGTGTCCGTCTGTA 60.038 55.000 0.00 0.00 39.52 2.74
1622 2090 3.246226 CGTCTGTATTCTAGCCATTGTGC 59.754 47.826 0.00 0.00 0.00 4.57
1636 2104 1.655484 TTGTGCTGTGTCAGTCAGTG 58.345 50.000 0.00 0.00 35.60 3.66
1646 2114 2.093500 TGTCAGTCAGTGAGTTTGCTGT 60.093 45.455 0.00 0.00 35.13 4.40
1654 2122 3.504906 CAGTGAGTTTGCTGTCCATTCAT 59.495 43.478 0.00 0.00 0.00 2.57
1655 2123 3.755378 AGTGAGTTTGCTGTCCATTCATC 59.245 43.478 0.00 0.00 0.00 2.92
1657 2125 3.002791 GAGTTTGCTGTCCATTCATCGA 58.997 45.455 0.00 0.00 0.00 3.59
1683 2151 2.877097 TAGATGGTGGCAATGTGTGT 57.123 45.000 0.00 0.00 0.00 3.72
1691 2159 3.244044 GGTGGCAATGTGTGTACCATTTT 60.244 43.478 0.00 0.00 36.89 1.82
1693 2161 3.244009 TGGCAATGTGTGTACCATTTTGG 60.244 43.478 0.00 0.00 45.02 3.28
1717 2185 8.368215 GGTTCGTTACCGTAAAATTGATTTAC 57.632 34.615 0.00 1.88 46.52 2.01
1736 2225 9.335891 TGATTTACGCTTATTACATGTGTTTTG 57.664 29.630 9.11 0.00 0.00 2.44
1741 2230 7.867752 ACGCTTATTACATGTGTTTTGTAAGT 58.132 30.769 9.11 0.00 41.44 2.24
1742 2231 8.013378 ACGCTTATTACATGTGTTTTGTAAGTC 58.987 33.333 9.11 4.27 41.44 3.01
1745 2234 9.329913 CTTATTACATGTGTTTTGTAAGTCTGC 57.670 33.333 9.11 0.00 41.44 4.26
1746 2235 4.568152 ACATGTGTTTTGTAAGTCTGCC 57.432 40.909 0.00 0.00 0.00 4.85
1747 2236 4.207165 ACATGTGTTTTGTAAGTCTGCCT 58.793 39.130 0.00 0.00 0.00 4.75
1754 2243 4.893424 TTTGTAAGTCTGCCTTTGTCAC 57.107 40.909 0.00 0.00 34.46 3.67
1755 2244 2.846193 TGTAAGTCTGCCTTTGTCACC 58.154 47.619 0.00 0.00 34.46 4.02
1756 2245 2.171659 TGTAAGTCTGCCTTTGTCACCA 59.828 45.455 0.00 0.00 34.46 4.17
1757 2246 1.972872 AAGTCTGCCTTTGTCACCAG 58.027 50.000 0.00 0.00 0.00 4.00
1770 2259 8.034804 GCCTTTGTCACCAGTCAAATATTATTT 58.965 33.333 0.00 0.00 33.49 1.40
1785 2274 9.359653 CAAATATTATTTGATCCTCAGGGACTT 57.640 33.333 19.91 0.00 45.43 3.01
1897 2386 3.585289 TCATGGTGTGGAGCTTAAGGTAA 59.415 43.478 7.26 0.00 0.00 2.85
1898 2387 4.227300 TCATGGTGTGGAGCTTAAGGTAAT 59.773 41.667 7.26 0.00 0.00 1.89
1899 2388 4.216411 TGGTGTGGAGCTTAAGGTAATC 57.784 45.455 7.26 1.51 0.00 1.75
1901 2390 4.288626 TGGTGTGGAGCTTAAGGTAATCTT 59.711 41.667 7.26 0.00 39.40 2.40
1902 2391 5.486063 TGGTGTGGAGCTTAAGGTAATCTTA 59.514 40.000 7.26 0.00 36.93 2.10
1947 2446 2.694628 TGCATTGTCTGAAGCCAGTTTT 59.305 40.909 0.00 0.00 41.16 2.43
1948 2447 3.132646 TGCATTGTCTGAAGCCAGTTTTT 59.867 39.130 0.00 0.00 41.16 1.94
1951 2450 5.594926 CATTGTCTGAAGCCAGTTTTTCTT 58.405 37.500 0.00 0.00 41.16 2.52
1952 2451 6.735694 GCATTGTCTGAAGCCAGTTTTTCTTA 60.736 38.462 0.00 0.00 41.16 2.10
1953 2452 6.959639 TTGTCTGAAGCCAGTTTTTCTTAT 57.040 33.333 0.00 0.00 41.16 1.73
1954 2453 6.317789 TGTCTGAAGCCAGTTTTTCTTATG 57.682 37.500 0.00 0.00 41.16 1.90
1955 2454 5.827797 TGTCTGAAGCCAGTTTTTCTTATGT 59.172 36.000 0.00 0.00 41.16 2.29
1975 2474 5.168526 TGTGTGTCTACTGTTTTGATTGC 57.831 39.130 0.00 0.00 0.00 3.56
1977 2476 3.249799 TGTGTCTACTGTTTTGATTGCCG 59.750 43.478 0.00 0.00 0.00 5.69
1992 2491 1.733399 GCCGTGTCAGACCGAAGAC 60.733 63.158 11.67 0.00 35.37 3.01
1995 2494 0.168348 CGTGTCAGACCGAAGACGAT 59.832 55.000 4.73 0.00 42.66 3.73
1998 2497 0.809385 GTCAGACCGAAGACGATGGA 59.191 55.000 0.00 0.00 42.66 3.41
2016 2515 2.368875 TGGAAGAGTCTTTCCTGTCACC 59.631 50.000 8.77 2.67 45.59 4.02
2055 2554 2.568956 AGTAGACTGCCTGCTGAATGAA 59.431 45.455 2.88 0.00 36.44 2.57
2067 2566 2.999355 GCTGAATGAAGCGAGAAGACTT 59.001 45.455 0.00 0.00 32.56 3.01
2079 2578 3.695060 CGAGAAGACTTGGAGGTAGCTAA 59.305 47.826 0.00 0.00 0.00 3.09
2114 2620 0.729116 GCTGTCCATTCATCCACACG 59.271 55.000 0.00 0.00 0.00 4.49
2190 2698 0.108329 AGGCTGGTAAATCCGTGTCG 60.108 55.000 0.00 0.00 39.52 4.35
2203 2711 1.005037 GTGTCGGGTGCATCTGTCA 60.005 57.895 5.52 3.28 0.00 3.58
2205 2713 0.324614 TGTCGGGTGCATCTGTCAAT 59.675 50.000 5.52 0.00 0.00 2.57
2207 2715 0.612744 TCGGGTGCATCTGTCAATGA 59.387 50.000 5.52 0.00 0.00 2.57
2211 2719 2.756760 GGGTGCATCTGTCAATGACAAT 59.243 45.455 17.41 10.61 42.26 2.71
2214 2722 2.756207 TGCATCTGTCAATGACAATGGG 59.244 45.455 25.09 13.96 42.26 4.00
2217 2725 4.082081 GCATCTGTCAATGACAATGGGAAA 60.082 41.667 25.09 8.02 42.26 3.13
2221 2729 6.690530 TCTGTCAATGACAATGGGAAATTTC 58.309 36.000 17.41 9.83 42.26 2.17
2226 2734 6.930164 TCAATGACAATGGGAAATTTCTTGTG 59.070 34.615 22.04 15.33 30.63 3.33
2227 2735 5.212532 TGACAATGGGAAATTTCTTGTGG 57.787 39.130 22.04 11.55 30.63 4.17
2233 2741 5.529581 TGGGAAATTTCTTGTGGAAGTTC 57.470 39.130 17.42 0.00 33.66 3.01
2245 2753 2.731976 GTGGAAGTTCAGAAGCGTACTG 59.268 50.000 5.01 0.00 36.80 2.74
2266 2774 9.051027 GTACTGTTGATTTTGTTGATTACATCG 57.949 33.333 0.00 0.00 36.44 3.84
2268 2776 8.514594 ACTGTTGATTTTGTTGATTACATCGAT 58.485 29.630 0.00 0.00 36.44 3.59
2271 2779 6.264832 TGATTTTGTTGATTACATCGATGCC 58.735 36.000 25.11 12.17 36.44 4.40
2289 2797 2.094803 TGCCAATTATGTCTTGGTTGCG 60.095 45.455 4.19 0.00 44.17 4.85
2320 2835 3.041211 AGCCAGCAGGTATGTGAATAGA 58.959 45.455 0.00 0.00 37.19 1.98
2339 2854 9.278978 TGAATAGATGCTTACTCTACTAGACAG 57.721 37.037 0.00 0.00 0.00 3.51
2342 2857 5.530915 AGATGCTTACTCTACTAGACAGCAG 59.469 44.000 0.00 0.00 42.86 4.24
2344 2859 4.636648 TGCTTACTCTACTAGACAGCAGAC 59.363 45.833 0.00 0.00 38.24 3.51
2347 2862 4.022413 ACTCTACTAGACAGCAGACACA 57.978 45.455 0.00 0.00 0.00 3.72
2350 2865 6.181190 ACTCTACTAGACAGCAGACACAATA 58.819 40.000 0.00 0.00 0.00 1.90
2352 2867 7.993758 ACTCTACTAGACAGCAGACACAATATA 59.006 37.037 0.00 0.00 0.00 0.86
2354 2869 7.993758 TCTACTAGACAGCAGACACAATATACT 59.006 37.037 0.00 0.00 0.00 2.12
2355 2870 9.274206 CTACTAGACAGCAGACACAATATACTA 57.726 37.037 0.00 0.00 0.00 1.82
2356 2871 7.932335 ACTAGACAGCAGACACAATATACTAC 58.068 38.462 0.00 0.00 0.00 2.73
2357 2872 6.150396 AGACAGCAGACACAATATACTACC 57.850 41.667 0.00 0.00 0.00 3.18
2358 2873 5.894393 AGACAGCAGACACAATATACTACCT 59.106 40.000 0.00 0.00 0.00 3.08
2359 2874 6.039941 AGACAGCAGACACAATATACTACCTC 59.960 42.308 0.00 0.00 0.00 3.85
2360 2875 5.069251 ACAGCAGACACAATATACTACCTCC 59.931 44.000 0.00 0.00 0.00 4.30
2361 2876 4.589374 AGCAGACACAATATACTACCTCCC 59.411 45.833 0.00 0.00 0.00 4.30
2363 2878 5.070580 GCAGACACAATATACTACCTCCCTT 59.929 44.000 0.00 0.00 0.00 3.95
2364 2879 6.408206 GCAGACACAATATACTACCTCCCTTT 60.408 42.308 0.00 0.00 0.00 3.11
2365 2880 7.210873 CAGACACAATATACTACCTCCCTTTC 58.789 42.308 0.00 0.00 0.00 2.62
2366 2881 6.901300 AGACACAATATACTACCTCCCTTTCA 59.099 38.462 0.00 0.00 0.00 2.69
2367 2882 7.569111 AGACACAATATACTACCTCCCTTTCAT 59.431 37.037 0.00 0.00 0.00 2.57
2368 2883 7.509546 ACACAATATACTACCTCCCTTTCATG 58.490 38.462 0.00 0.00 0.00 3.07
2386 2901 3.327757 TCATGTTCTCTTACTTGCAGGGT 59.672 43.478 0.00 0.00 0.00 4.34
2392 2907 3.192844 TCTCTTACTTGCAGGGTTACTCG 59.807 47.826 0.00 0.00 0.00 4.18
2401 2916 0.107831 AGGGTTACTCGTTTGCTGCA 59.892 50.000 0.00 0.00 0.00 4.41
2425 2940 4.303086 ACACGGTCACTCTATTATTCCG 57.697 45.455 0.00 0.00 41.77 4.30
2482 2997 2.114638 GCGACTGGCTGATCTCTCT 58.885 57.895 0.00 0.00 39.11 3.10
2831 3346 1.800805 TTCAGAAAAGCGCTCCTGAG 58.199 50.000 25.50 12.84 37.04 3.35
2849 3364 1.544691 GAGTTAACTCAGGTGAGCCGA 59.455 52.381 27.12 0.00 45.79 5.54
2902 3417 6.284475 TGTTTGCTTACATCAATTGTTTGC 57.716 33.333 5.13 3.95 39.87 3.68
2968 3483 1.886542 GGCCCTGTTGTTCTTCGATTT 59.113 47.619 0.00 0.00 0.00 2.17
3038 3553 2.481185 GCCCGAAGAAATTGTACACGAA 59.519 45.455 0.00 0.00 0.00 3.85
3196 3884 0.459489 TGTCCCACAAGCTTGCAAAC 59.541 50.000 26.27 18.13 0.00 2.93
3386 4075 2.184533 TGCGGTTCTGATCTTTCCCTA 58.815 47.619 0.00 0.00 0.00 3.53
3411 4108 6.333416 TCCTTCGTTAATGTCTTCATCTGAG 58.667 40.000 0.00 0.00 32.56 3.35
3412 4109 6.152831 TCCTTCGTTAATGTCTTCATCTGAGA 59.847 38.462 0.00 0.00 32.56 3.27
3533 4230 3.967332 AAATGCCTTCAACAAGATGGG 57.033 42.857 0.00 0.00 40.89 4.00
3537 4234 2.291475 TGCCTTCAACAAGATGGGCATA 60.291 45.455 0.00 0.00 44.74 3.14
3687 4384 1.543871 GCTTTAACCAACCTCCGTCCA 60.544 52.381 0.00 0.00 0.00 4.02
3712 4413 7.337689 CAGAAATACTTGTCATCCATTTCTCCA 59.662 37.037 10.72 0.00 41.60 3.86
3749 4450 3.263425 ACGGAGGGAGTGTTTTGTATGAT 59.737 43.478 0.00 0.00 0.00 2.45
3923 4787 5.592587 TTTGGGGATTCCTTCTAGAACAA 57.407 39.130 0.00 0.00 36.20 2.83
4053 4918 4.522789 ACCGTGCCAAAAAGTCATCTAAAT 59.477 37.500 0.00 0.00 0.00 1.40
4109 4974 1.544246 GGTTGTTGGGAAGGTATGTGC 59.456 52.381 0.00 0.00 0.00 4.57
4110 4975 1.199097 GTTGTTGGGAAGGTATGTGCG 59.801 52.381 0.00 0.00 0.00 5.34
4111 4976 0.398696 TGTTGGGAAGGTATGTGCGT 59.601 50.000 0.00 0.00 0.00 5.24
4112 4977 0.802494 GTTGGGAAGGTATGTGCGTG 59.198 55.000 0.00 0.00 0.00 5.34
4113 4978 0.687920 TTGGGAAGGTATGTGCGTGA 59.312 50.000 0.00 0.00 0.00 4.35
4115 4980 2.112190 TGGGAAGGTATGTGCGTGATA 58.888 47.619 0.00 0.00 0.00 2.15
4116 4981 2.703536 TGGGAAGGTATGTGCGTGATAT 59.296 45.455 0.00 0.00 0.00 1.63
4117 4982 3.244078 TGGGAAGGTATGTGCGTGATATC 60.244 47.826 0.00 0.00 0.00 1.63
4118 4983 3.006967 GGGAAGGTATGTGCGTGATATCT 59.993 47.826 3.98 0.00 0.00 1.98
4120 4985 5.279306 GGGAAGGTATGTGCGTGATATCTTA 60.279 44.000 3.98 0.00 28.70 2.10
4178 5045 2.897436 TGTATCTGTGCTCACTGATGC 58.103 47.619 23.69 22.64 45.49 3.91
4201 5068 3.165875 CCCTCATCGTCATATGTAGGGT 58.834 50.000 1.90 0.00 38.36 4.34
4254 5121 4.020128 AGGTGTTCCACTTTCAGAGGTATC 60.020 45.833 0.00 0.00 34.40 2.24
4293 5161 3.176552 TGGCAGTTTTCACAAACATGG 57.823 42.857 0.00 0.00 44.32 3.66
4294 5162 2.499289 TGGCAGTTTTCACAAACATGGT 59.501 40.909 0.00 0.00 44.32 3.55
4297 5165 4.180057 GCAGTTTTCACAAACATGGTTCA 58.820 39.130 0.00 0.00 44.32 3.18
4311 5179 5.901552 ACATGGTTCAACTCACGAAAATTT 58.098 33.333 0.00 0.00 0.00 1.82
4487 5355 2.456594 TTAACGTCGACGGGGTCACG 62.457 60.000 37.89 14.84 44.95 4.35
4514 5382 5.449177 CGGATTCAATTTTCAGGTAAGGAGC 60.449 44.000 0.00 0.00 0.00 4.70
4774 5666 6.045955 GGATTCTTAGTTCTTACTGGCTGAG 58.954 44.000 0.00 0.00 35.78 3.35
4775 5667 6.351456 GGATTCTTAGTTCTTACTGGCTGAGT 60.351 42.308 0.00 0.00 38.88 3.41
4784 5676 6.659745 TCTTACTGGCTGAGTAACTTTGTA 57.340 37.500 0.00 0.00 41.42 2.41
4866 5783 7.404985 CAAAGATAACCAAGATTCACATCGAG 58.595 38.462 0.00 0.00 34.17 4.04
4900 5817 3.805422 TCGTCTTGTAGCGACAATTTTGT 59.195 39.130 12.99 0.00 44.53 2.83
4901 5818 4.983538 TCGTCTTGTAGCGACAATTTTGTA 59.016 37.500 12.99 0.00 44.53 2.41
4902 5819 5.462729 TCGTCTTGTAGCGACAATTTTGTAA 59.537 36.000 12.99 0.00 44.53 2.41
4974 5891 9.935241 GGCAGTAAGAATCAGAAGATCAATATA 57.065 33.333 0.00 0.00 31.90 0.86
5008 5945 3.423539 TTGCATTTCCTGAGCTACAGT 57.576 42.857 10.86 0.00 44.40 3.55
5155 6097 2.332063 ATGCAGTCCCTAAATGTCCG 57.668 50.000 0.00 0.00 0.00 4.79
5228 6184 6.797454 AGATTCAGAAAGGTACATCGACTAC 58.203 40.000 0.00 0.00 0.00 2.73
5231 6187 5.250982 TCAGAAAGGTACATCGACTACTCA 58.749 41.667 0.00 0.00 0.00 3.41
5312 6288 3.659786 TGGTGTAACAATCAGAAGACCG 58.340 45.455 0.00 0.00 39.98 4.79
5317 6293 1.645034 ACAATCAGAAGACCGATGCG 58.355 50.000 0.00 0.00 0.00 4.73
5335 6311 1.600413 GCGTTGCTTTCCAGAAGGTTG 60.600 52.381 0.00 0.00 35.89 3.77
5347 6323 4.352595 TCCAGAAGGTTGGATTGGAACTTA 59.647 41.667 0.00 0.00 42.24 2.24
5365 6341 6.183360 GGAACTTACAGCTACAGCAACATAAG 60.183 42.308 3.70 7.80 45.16 1.73
5429 6413 8.797350 ATGTTCTCATCACATCACAGATAAAA 57.203 30.769 0.00 0.00 27.99 1.52
5456 6443 5.682943 TTGGAAACATAAGAACTCAACCG 57.317 39.130 0.00 0.00 42.32 4.44
5458 6445 4.753107 TGGAAACATAAGAACTCAACCGTC 59.247 41.667 0.00 0.00 33.40 4.79
5479 6466 6.018588 CCGTCACTACATTTTCTTAACACACA 60.019 38.462 0.00 0.00 0.00 3.72
5482 6469 8.342634 GTCACTACATTTTCTTAACACACACAT 58.657 33.333 0.00 0.00 0.00 3.21
5536 6525 5.879763 TCCTTCATCAAAGAGAATGGTTGA 58.120 37.500 0.00 0.00 37.12 3.18
5559 6548 2.101249 CCACAAAACTGCACCTGTTCAT 59.899 45.455 0.00 0.00 0.00 2.57
5561 6550 3.023119 ACAAAACTGCACCTGTTCATCA 58.977 40.909 0.00 0.00 0.00 3.07
5562 6551 3.067180 ACAAAACTGCACCTGTTCATCAG 59.933 43.478 0.00 0.00 43.27 2.90
5563 6552 1.242076 AACTGCACCTGTTCATCAGC 58.758 50.000 0.00 0.00 42.38 4.26
5564 6553 0.399454 ACTGCACCTGTTCATCAGCT 59.601 50.000 0.00 0.00 42.38 4.24
5565 6554 1.625315 ACTGCACCTGTTCATCAGCTA 59.375 47.619 0.00 0.00 42.38 3.32
5566 6555 2.277969 CTGCACCTGTTCATCAGCTAG 58.722 52.381 0.00 0.00 42.38 3.42
5567 6556 1.012841 GCACCTGTTCATCAGCTAGC 58.987 55.000 6.62 6.62 42.38 3.42
5568 6557 1.406614 GCACCTGTTCATCAGCTAGCT 60.407 52.381 12.68 12.68 42.38 3.32
5569 6558 2.159043 GCACCTGTTCATCAGCTAGCTA 60.159 50.000 18.86 6.64 42.38 3.32
5571 6560 4.507710 CACCTGTTCATCAGCTAGCTAAA 58.492 43.478 18.86 9.31 42.38 1.85
5574 6563 5.645497 ACCTGTTCATCAGCTAGCTAAAAAG 59.355 40.000 18.86 12.99 42.38 2.27
5636 6670 3.891049 AGCAGGCCCTAATTAAGAACTG 58.109 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 6.060136 TGAAGATGAAGGATCCATCATGTTC 58.940 40.000 38.03 38.03 45.82 3.18
212 214 7.908230 TCAGCAACAAAAATTCATGAAGAAAC 58.092 30.769 14.54 0.00 40.22 2.78
250 252 9.640963 AGTAGAGAAACTGATATGTAAACACAC 57.359 33.333 0.00 0.00 0.00 3.82
324 326 5.476945 GCTTCTTCAAATCCCTGGAAAGTAA 59.523 40.000 0.00 0.00 0.00 2.24
423 484 4.641396 TGTACAGCAAGACAACAAGCTAT 58.359 39.130 0.00 0.00 35.19 2.97
640 1071 2.039818 TTGAAACGGCACCAGTACAA 57.960 45.000 0.00 0.00 0.00 2.41
642 1073 3.003897 TCAATTTGAAACGGCACCAGTAC 59.996 43.478 0.00 0.00 0.00 2.73
646 1077 3.526931 TTTCAATTTGAAACGGCACCA 57.473 38.095 18.29 0.00 41.02 4.17
661 1092 9.273016 TGTTTTTGTTAAGGTGTTCATTTTCAA 57.727 25.926 0.00 0.00 0.00 2.69
667 1098 9.442047 TCAATTTGTTTTTGTTAAGGTGTTCAT 57.558 25.926 0.00 0.00 0.00 2.57
686 1117 5.181690 TGGTTTCTTCCGTCTTCAATTTG 57.818 39.130 0.00 0.00 0.00 2.32
699 1130 7.605410 TGAAACGGTTATAGATGGTTTCTTC 57.395 36.000 13.87 0.00 44.05 2.87
702 1133 9.072294 CAATTTGAAACGGTTATAGATGGTTTC 57.928 33.333 7.74 7.74 44.01 2.78
718 1149 5.540911 TGCCATCCTTCTTCAATTTGAAAC 58.459 37.500 12.62 0.00 35.73 2.78
720 1151 5.539574 TCTTGCCATCCTTCTTCAATTTGAA 59.460 36.000 11.19 11.19 34.79 2.69
721 1152 5.047802 GTCTTGCCATCCTTCTTCAATTTGA 60.048 40.000 0.00 0.00 0.00 2.69
722 1153 5.047519 AGTCTTGCCATCCTTCTTCAATTTG 60.048 40.000 0.00 0.00 0.00 2.32
723 1154 5.082425 AGTCTTGCCATCCTTCTTCAATTT 58.918 37.500 0.00 0.00 0.00 1.82
724 1155 4.670765 AGTCTTGCCATCCTTCTTCAATT 58.329 39.130 0.00 0.00 0.00 2.32
725 1156 4.313020 AGTCTTGCCATCCTTCTTCAAT 57.687 40.909 0.00 0.00 0.00 2.57
726 1157 3.795688 AGTCTTGCCATCCTTCTTCAA 57.204 42.857 0.00 0.00 0.00 2.69
728 1159 7.275920 TCTTATTAGTCTTGCCATCCTTCTTC 58.724 38.462 0.00 0.00 0.00 2.87
729 1160 7.200434 TCTTATTAGTCTTGCCATCCTTCTT 57.800 36.000 0.00 0.00 0.00 2.52
730 1161 6.814954 TCTTATTAGTCTTGCCATCCTTCT 57.185 37.500 0.00 0.00 0.00 2.85
731 1162 6.072783 GCATCTTATTAGTCTTGCCATCCTTC 60.073 42.308 0.00 0.00 0.00 3.46
732 1163 5.767168 GCATCTTATTAGTCTTGCCATCCTT 59.233 40.000 0.00 0.00 0.00 3.36
733 1164 5.312079 GCATCTTATTAGTCTTGCCATCCT 58.688 41.667 0.00 0.00 0.00 3.24
735 1166 5.065914 TGGCATCTTATTAGTCTTGCCATC 58.934 41.667 16.28 0.08 44.91 3.51
768 1214 5.607119 TGCTTGTCGACCTCTTTTATTTC 57.393 39.130 14.12 0.00 0.00 2.17
771 1217 4.215613 GGTTTGCTTGTCGACCTCTTTTAT 59.784 41.667 14.12 0.00 0.00 1.40
772 1218 3.562557 GGTTTGCTTGTCGACCTCTTTTA 59.437 43.478 14.12 0.00 0.00 1.52
773 1219 2.357952 GGTTTGCTTGTCGACCTCTTTT 59.642 45.455 14.12 0.00 0.00 2.27
774 1220 1.947456 GGTTTGCTTGTCGACCTCTTT 59.053 47.619 14.12 0.00 0.00 2.52
775 1221 1.134220 TGGTTTGCTTGTCGACCTCTT 60.134 47.619 14.12 0.00 33.33 2.85
776 1222 0.468226 TGGTTTGCTTGTCGACCTCT 59.532 50.000 14.12 0.00 33.33 3.69
777 1223 1.305201 TTGGTTTGCTTGTCGACCTC 58.695 50.000 14.12 2.41 33.33 3.85
778 1224 1.404035 GTTTGGTTTGCTTGTCGACCT 59.596 47.619 14.12 0.00 33.33 3.85
779 1225 1.133407 TGTTTGGTTTGCTTGTCGACC 59.867 47.619 14.12 0.00 0.00 4.79
780 1226 2.182014 GTGTTTGGTTTGCTTGTCGAC 58.818 47.619 9.11 9.11 0.00 4.20
781 1227 1.133407 GGTGTTTGGTTTGCTTGTCGA 59.867 47.619 0.00 0.00 0.00 4.20
782 1228 1.135257 TGGTGTTTGGTTTGCTTGTCG 60.135 47.619 0.00 0.00 0.00 4.35
783 1229 2.267426 GTGGTGTTTGGTTTGCTTGTC 58.733 47.619 0.00 0.00 0.00 3.18
784 1230 1.620819 TGTGGTGTTTGGTTTGCTTGT 59.379 42.857 0.00 0.00 0.00 3.16
785 1231 2.376808 TGTGGTGTTTGGTTTGCTTG 57.623 45.000 0.00 0.00 0.00 4.01
786 1232 3.007398 TCTTTGTGGTGTTTGGTTTGCTT 59.993 39.130 0.00 0.00 0.00 3.91
787 1233 2.564947 TCTTTGTGGTGTTTGGTTTGCT 59.435 40.909 0.00 0.00 0.00 3.91
788 1234 2.966050 TCTTTGTGGTGTTTGGTTTGC 58.034 42.857 0.00 0.00 0.00 3.68
789 1235 3.682377 GGTTCTTTGTGGTGTTTGGTTTG 59.318 43.478 0.00 0.00 0.00 2.93
790 1236 3.325135 TGGTTCTTTGTGGTGTTTGGTTT 59.675 39.130 0.00 0.00 0.00 3.27
791 1237 2.900546 TGGTTCTTTGTGGTGTTTGGTT 59.099 40.909 0.00 0.00 0.00 3.67
792 1238 2.232696 GTGGTTCTTTGTGGTGTTTGGT 59.767 45.455 0.00 0.00 0.00 3.67
793 1239 2.495669 AGTGGTTCTTTGTGGTGTTTGG 59.504 45.455 0.00 0.00 0.00 3.28
794 1240 3.866883 AGTGGTTCTTTGTGGTGTTTG 57.133 42.857 0.00 0.00 0.00 2.93
795 1241 3.380320 GCTAGTGGTTCTTTGTGGTGTTT 59.620 43.478 0.00 0.00 0.00 2.83
796 1242 2.949644 GCTAGTGGTTCTTTGTGGTGTT 59.050 45.455 0.00 0.00 0.00 3.32
797 1243 2.092646 TGCTAGTGGTTCTTTGTGGTGT 60.093 45.455 0.00 0.00 0.00 4.16
798 1244 2.549754 CTGCTAGTGGTTCTTTGTGGTG 59.450 50.000 0.00 0.00 0.00 4.17
799 1245 2.851195 CTGCTAGTGGTTCTTTGTGGT 58.149 47.619 0.00 0.00 0.00 4.16
800 1246 1.537202 GCTGCTAGTGGTTCTTTGTGG 59.463 52.381 0.00 0.00 0.00 4.17
801 1247 2.481952 GAGCTGCTAGTGGTTCTTTGTG 59.518 50.000 0.15 0.00 0.00 3.33
802 1248 2.551071 GGAGCTGCTAGTGGTTCTTTGT 60.551 50.000 0.15 0.00 0.00 2.83
803 1249 2.079925 GGAGCTGCTAGTGGTTCTTTG 58.920 52.381 0.15 0.00 0.00 2.77
804 1250 1.981495 AGGAGCTGCTAGTGGTTCTTT 59.019 47.619 5.69 0.00 0.00 2.52
805 1251 1.552792 GAGGAGCTGCTAGTGGTTCTT 59.447 52.381 8.12 0.00 0.00 2.52
806 1252 1.190643 GAGGAGCTGCTAGTGGTTCT 58.809 55.000 8.12 0.00 0.00 3.01
807 1253 0.179124 CGAGGAGCTGCTAGTGGTTC 60.179 60.000 8.12 0.00 0.00 3.62
808 1254 0.612174 TCGAGGAGCTGCTAGTGGTT 60.612 55.000 8.12 0.00 0.00 3.67
809 1255 1.000771 TCGAGGAGCTGCTAGTGGT 60.001 57.895 8.12 0.00 0.00 4.16
810 1256 1.732917 CTCGAGGAGCTGCTAGTGG 59.267 63.158 8.12 2.32 0.00 4.00
811 1257 1.034838 ACCTCGAGGAGCTGCTAGTG 61.035 60.000 37.69 9.17 38.94 2.74
812 1258 0.750182 GACCTCGAGGAGCTGCTAGT 60.750 60.000 37.69 12.12 38.94 2.57
813 1259 1.781025 CGACCTCGAGGAGCTGCTAG 61.781 65.000 37.69 8.68 43.02 3.42
814 1260 1.820056 CGACCTCGAGGAGCTGCTA 60.820 63.158 37.69 0.00 43.02 3.49
815 1261 3.137459 CGACCTCGAGGAGCTGCT 61.137 66.667 37.69 14.61 43.02 4.24
816 1262 3.404141 GACGACCTCGAGGAGCTGC 62.404 68.421 37.69 17.72 43.02 5.25
817 1263 2.795297 GACGACCTCGAGGAGCTG 59.205 66.667 37.69 23.39 43.02 4.24
818 1264 2.820479 CGACGACCTCGAGGAGCT 60.820 66.667 37.69 16.31 46.14 4.09
819 1265 2.818714 TCGACGACCTCGAGGAGC 60.819 66.667 37.69 25.38 46.75 4.70
825 1271 0.932123 CAGCATGATCGACGACCTCG 60.932 60.000 0.00 0.00 40.98 4.63
826 1272 0.101399 ACAGCATGATCGACGACCTC 59.899 55.000 0.00 0.00 39.69 3.85
827 1273 0.101399 GACAGCATGATCGACGACCT 59.899 55.000 0.00 0.00 39.69 3.85
828 1274 0.101399 AGACAGCATGATCGACGACC 59.899 55.000 0.00 0.00 39.69 4.79
829 1275 1.585668 CAAGACAGCATGATCGACGAC 59.414 52.381 0.00 0.00 39.69 4.34
830 1276 1.469767 CCAAGACAGCATGATCGACGA 60.470 52.381 0.00 0.00 39.69 4.20
831 1277 0.926155 CCAAGACAGCATGATCGACG 59.074 55.000 0.00 0.00 39.69 5.12
832 1278 1.293924 CCCAAGACAGCATGATCGAC 58.706 55.000 0.00 0.00 39.69 4.20
833 1279 0.904649 ACCCAAGACAGCATGATCGA 59.095 50.000 0.00 0.00 39.69 3.59
834 1280 2.205074 GTACCCAAGACAGCATGATCG 58.795 52.381 0.00 0.00 39.69 3.69
835 1281 2.092968 TGGTACCCAAGACAGCATGATC 60.093 50.000 10.07 0.00 39.69 2.92
836 1282 1.915489 TGGTACCCAAGACAGCATGAT 59.085 47.619 10.07 0.00 39.69 2.45
837 1283 1.357137 TGGTACCCAAGACAGCATGA 58.643 50.000 10.07 0.00 39.69 3.07
838 1284 2.425143 ATGGTACCCAAGACAGCATG 57.575 50.000 10.07 0.00 38.86 4.06
839 1285 3.456380 AAATGGTACCCAAGACAGCAT 57.544 42.857 10.07 0.00 36.95 3.79
840 1286 2.969821 AAATGGTACCCAAGACAGCA 57.030 45.000 10.07 0.00 36.95 4.41
858 1304 7.776030 TGACATGTAGGTTTTCTAGGTCAAAAA 59.224 33.333 0.00 0.00 34.55 1.94
859 1305 7.284074 TGACATGTAGGTTTTCTAGGTCAAAA 58.716 34.615 0.00 0.00 34.55 2.44
860 1306 6.833041 TGACATGTAGGTTTTCTAGGTCAAA 58.167 36.000 0.00 0.00 34.55 2.69
861 1307 6.428083 TGACATGTAGGTTTTCTAGGTCAA 57.572 37.500 0.00 0.00 34.55 3.18
862 1308 6.428083 TTGACATGTAGGTTTTCTAGGTCA 57.572 37.500 0.00 0.00 35.12 4.02
863 1309 7.278868 CAGATTGACATGTAGGTTTTCTAGGTC 59.721 40.741 0.00 0.00 0.00 3.85
864 1310 7.106239 CAGATTGACATGTAGGTTTTCTAGGT 58.894 38.462 0.00 0.00 0.00 3.08
865 1311 6.540189 CCAGATTGACATGTAGGTTTTCTAGG 59.460 42.308 0.00 0.00 0.00 3.02
866 1312 6.540189 CCCAGATTGACATGTAGGTTTTCTAG 59.460 42.308 0.00 0.00 0.00 2.43
867 1313 6.414732 CCCAGATTGACATGTAGGTTTTCTA 58.585 40.000 0.00 0.00 0.00 2.10
868 1314 5.256474 CCCAGATTGACATGTAGGTTTTCT 58.744 41.667 0.00 0.00 0.00 2.52
869 1315 4.142381 GCCCAGATTGACATGTAGGTTTTC 60.142 45.833 0.00 0.00 0.00 2.29
870 1316 3.763897 GCCCAGATTGACATGTAGGTTTT 59.236 43.478 0.00 0.00 0.00 2.43
871 1317 3.010584 AGCCCAGATTGACATGTAGGTTT 59.989 43.478 0.00 0.00 0.00 3.27
872 1318 2.578021 AGCCCAGATTGACATGTAGGTT 59.422 45.455 0.00 0.00 0.00 3.50
873 1319 2.171448 GAGCCCAGATTGACATGTAGGT 59.829 50.000 0.00 0.00 0.00 3.08
874 1320 2.486191 GGAGCCCAGATTGACATGTAGG 60.486 54.545 0.00 0.00 0.00 3.18
875 1321 2.171237 TGGAGCCCAGATTGACATGTAG 59.829 50.000 0.00 0.00 0.00 2.74
876 1322 2.195727 TGGAGCCCAGATTGACATGTA 58.804 47.619 0.00 0.00 0.00 2.29
877 1323 0.994247 TGGAGCCCAGATTGACATGT 59.006 50.000 0.00 0.00 0.00 3.21
878 1324 3.888424 TGGAGCCCAGATTGACATG 57.112 52.632 0.00 0.00 0.00 3.21
907 1353 2.280865 GCTATAGTGTGGGCCGGC 60.281 66.667 21.18 21.18 0.00 6.13
969 1415 2.644676 GAATTAGGTGGAAGGCTGGAC 58.355 52.381 0.00 0.00 0.00 4.02
1095 1544 1.599576 GCAGAAGGAGGTGGAGACC 59.400 63.158 0.00 0.00 43.52 3.85
1099 1548 3.706373 GGCGCAGAAGGAGGTGGA 61.706 66.667 10.83 0.00 0.00 4.02
1102 1551 3.764466 CGAGGCGCAGAAGGAGGT 61.764 66.667 10.83 0.00 0.00 3.85
1213 1662 2.420138 GCGACTGCTCATCCTCCTA 58.580 57.895 0.00 0.00 38.39 2.94
1360 1811 5.726980 TTTCAGTCCAATGGAAATCAAGG 57.273 39.130 2.31 0.00 31.38 3.61
1384 1835 3.981071 AAGCAACACCATAGCAGTAGA 57.019 42.857 0.00 0.00 0.00 2.59
1401 1855 6.039717 TCCATTCCAGCAATTCATACTTAAGC 59.960 38.462 1.29 0.00 0.00 3.09
1453 1912 2.672996 GTGACATTGCACCGCCCT 60.673 61.111 0.00 0.00 32.68 5.19
1489 1948 1.587088 GCGTACACGTACCGATGGG 60.587 63.158 3.44 0.00 42.22 4.00
1492 1951 2.774799 GGGGCGTACACGTACCGAT 61.775 63.158 3.44 0.00 42.22 4.18
1501 1960 0.686441 AGCAGAGTATGGGGCGTACA 60.686 55.000 0.00 0.00 0.00 2.90
1503 1962 2.028125 GCAGCAGAGTATGGGGCGTA 62.028 60.000 0.00 0.00 0.00 4.42
1506 1965 2.590007 CGCAGCAGAGTATGGGGC 60.590 66.667 0.00 0.00 0.00 5.80
1507 1966 1.227380 GACGCAGCAGAGTATGGGG 60.227 63.158 0.00 0.00 33.95 4.96
1508 1967 1.589993 CGACGCAGCAGAGTATGGG 60.590 63.158 0.00 0.00 35.64 4.00
1509 1968 0.031314 ATCGACGCAGCAGAGTATGG 59.969 55.000 0.00 0.00 0.00 2.74
1512 1971 0.802222 GCAATCGACGCAGCAGAGTA 60.802 55.000 3.85 0.00 0.00 2.59
1523 1982 4.722908 GCATGCAATTGAAAAGCAATCGAC 60.723 41.667 14.21 0.00 46.25 4.20
1526 1985 4.630069 AGAGCATGCAATTGAAAAGCAATC 59.370 37.500 21.98 2.96 46.25 2.67
1546 2014 0.596577 ACAGTTGCAATGCAGCAGAG 59.403 50.000 23.17 14.56 46.54 3.35
1547 2015 0.312729 CACAGTTGCAATGCAGCAGA 59.687 50.000 23.17 0.00 46.54 4.26
1551 2019 1.373748 GGCCACAGTTGCAATGCAG 60.374 57.895 8.31 0.00 40.61 4.41
1552 2020 0.539207 TAGGCCACAGTTGCAATGCA 60.539 50.000 2.72 2.72 36.47 3.96
1554 2022 1.470098 GTCTAGGCCACAGTTGCAATG 59.530 52.381 5.01 4.87 0.00 2.82
1555 2023 1.073763 TGTCTAGGCCACAGTTGCAAT 59.926 47.619 5.01 0.00 0.00 3.56
1559 2027 2.874701 GCATATGTCTAGGCCACAGTTG 59.125 50.000 5.01 4.02 0.00 3.16
1562 2030 3.056250 CCTAGCATATGTCTAGGCCACAG 60.056 52.174 26.46 0.78 44.54 3.66
1579 2047 1.672881 GACACACCATGCATTCCTAGC 59.327 52.381 0.00 0.00 0.00 3.42
1581 2049 1.406751 CGGACACACCATGCATTCCTA 60.407 52.381 10.37 0.00 38.90 2.94
1583 2051 0.960364 ACGGACACACCATGCATTCC 60.960 55.000 0.00 0.00 38.90 3.01
1585 2053 0.036732 AGACGGACACACCATGCATT 59.963 50.000 0.00 0.00 38.90 3.56
1592 2060 3.734293 GCTAGAATACAGACGGACACACC 60.734 52.174 0.00 0.00 0.00 4.16
1593 2061 3.436496 GCTAGAATACAGACGGACACAC 58.564 50.000 0.00 0.00 0.00 3.82
1594 2062 2.426024 GGCTAGAATACAGACGGACACA 59.574 50.000 0.00 0.00 0.00 3.72
1595 2063 2.426024 TGGCTAGAATACAGACGGACAC 59.574 50.000 0.00 0.00 0.00 3.67
1596 2064 2.730382 TGGCTAGAATACAGACGGACA 58.270 47.619 0.00 0.00 0.00 4.02
1597 2065 4.051922 CAATGGCTAGAATACAGACGGAC 58.948 47.826 0.00 0.00 0.00 4.79
1598 2066 3.704566 ACAATGGCTAGAATACAGACGGA 59.295 43.478 0.00 0.00 0.00 4.69
1599 2067 3.804325 CACAATGGCTAGAATACAGACGG 59.196 47.826 0.00 0.00 0.00 4.79
1600 2068 3.246226 GCACAATGGCTAGAATACAGACG 59.754 47.826 0.00 0.00 0.00 4.18
1601 2069 4.272018 CAGCACAATGGCTAGAATACAGAC 59.728 45.833 0.00 0.00 43.68 3.51
1602 2070 4.080919 ACAGCACAATGGCTAGAATACAGA 60.081 41.667 0.00 0.00 43.68 3.41
1603 2071 4.034858 CACAGCACAATGGCTAGAATACAG 59.965 45.833 0.00 0.00 43.68 2.74
1604 2072 3.940852 CACAGCACAATGGCTAGAATACA 59.059 43.478 0.00 0.00 43.68 2.29
1605 2073 3.941483 ACACAGCACAATGGCTAGAATAC 59.059 43.478 0.00 0.00 43.68 1.89
1606 2074 4.191544 GACACAGCACAATGGCTAGAATA 58.808 43.478 0.00 0.00 43.68 1.75
1607 2075 3.012518 GACACAGCACAATGGCTAGAAT 58.987 45.455 0.00 0.00 43.68 2.40
1622 2090 2.286294 GCAAACTCACTGACTGACACAG 59.714 50.000 0.00 0.00 40.68 3.66
1636 2104 3.002791 TCGATGAATGGACAGCAAACTC 58.997 45.455 0.00 0.00 0.00 3.01
1654 2122 2.499693 TGCCACCATCTAATTCAGTCGA 59.500 45.455 0.00 0.00 0.00 4.20
1655 2123 2.905075 TGCCACCATCTAATTCAGTCG 58.095 47.619 0.00 0.00 0.00 4.18
1657 2125 4.400251 CACATTGCCACCATCTAATTCAGT 59.600 41.667 0.00 0.00 0.00 3.41
1664 2132 2.877097 ACACACATTGCCACCATCTA 57.123 45.000 0.00 0.00 0.00 1.98
1709 2177 9.900710 AAAACACATGTAATAAGCGTAAATCAA 57.099 25.926 0.00 0.00 0.00 2.57
1710 2178 9.335891 CAAAACACATGTAATAAGCGTAAATCA 57.664 29.630 0.00 0.00 0.00 2.57
1711 2179 9.337091 ACAAAACACATGTAATAAGCGTAAATC 57.663 29.630 0.00 0.00 0.00 2.17
1716 2184 7.867752 ACTTACAAAACACATGTAATAAGCGT 58.132 30.769 0.00 0.00 41.13 5.07
1717 2185 8.227791 AGACTTACAAAACACATGTAATAAGCG 58.772 33.333 0.00 0.00 41.13 4.68
1718 2186 9.329913 CAGACTTACAAAACACATGTAATAAGC 57.670 33.333 0.00 0.00 41.13 3.09
1719 2187 9.329913 GCAGACTTACAAAACACATGTAATAAG 57.670 33.333 0.00 3.62 41.13 1.73
1722 2211 6.490040 AGGCAGACTTACAAAACACATGTAAT 59.510 34.615 0.00 0.00 41.13 1.89
1732 2221 4.097286 GGTGACAAAGGCAGACTTACAAAA 59.903 41.667 0.00 0.00 38.85 2.44
1734 2223 3.211045 GGTGACAAAGGCAGACTTACAA 58.789 45.455 0.00 0.00 38.85 2.41
1736 2225 2.808543 CTGGTGACAAAGGCAGACTTAC 59.191 50.000 0.00 0.00 42.06 2.34
1741 2230 0.836606 TGACTGGTGACAAAGGCAGA 59.163 50.000 0.00 0.00 42.06 4.26
1742 2231 1.679139 TTGACTGGTGACAAAGGCAG 58.321 50.000 0.00 0.00 42.06 4.85
1745 2234 9.357652 CAAATAATATTTGACTGGTGACAAAGG 57.642 33.333 18.16 0.00 40.04 3.11
1770 2259 0.614697 TCGCAAGTCCCTGAGGATCA 60.615 55.000 0.00 0.00 46.41 2.92
1774 2263 0.321671 TTTCTCGCAAGTCCCTGAGG 59.678 55.000 0.00 0.00 39.48 3.86
1785 2274 2.637872 CCCCCTAGGATAATTTCTCGCA 59.362 50.000 11.48 0.00 38.24 5.10
1872 2361 3.209410 CTTAAGCTCCACACCATGATCC 58.791 50.000 0.00 0.00 0.00 3.36
1897 2386 9.638176 AGCAAAGATCCTGATGTAAATTAAGAT 57.362 29.630 0.00 0.00 0.00 2.40
1898 2387 9.466497 AAGCAAAGATCCTGATGTAAATTAAGA 57.534 29.630 0.00 0.00 0.00 2.10
1899 2388 9.512435 CAAGCAAAGATCCTGATGTAAATTAAG 57.488 33.333 0.00 0.00 0.00 1.85
1901 2390 8.461222 CACAAGCAAAGATCCTGATGTAAATTA 58.539 33.333 0.00 0.00 0.00 1.40
1902 2391 7.318141 CACAAGCAAAGATCCTGATGTAAATT 58.682 34.615 0.00 0.00 0.00 1.82
1933 2432 5.827797 ACACATAAGAAAAACTGGCTTCAGA 59.172 36.000 0.00 0.00 40.86 3.27
1947 2446 8.902540 ATCAAAACAGTAGACACACATAAGAA 57.097 30.769 0.00 0.00 0.00 2.52
1948 2447 8.773645 CAATCAAAACAGTAGACACACATAAGA 58.226 33.333 0.00 0.00 0.00 2.10
1951 2450 6.072728 GGCAATCAAAACAGTAGACACACATA 60.073 38.462 0.00 0.00 0.00 2.29
1952 2451 5.278463 GGCAATCAAAACAGTAGACACACAT 60.278 40.000 0.00 0.00 0.00 3.21
1953 2452 4.036262 GGCAATCAAAACAGTAGACACACA 59.964 41.667 0.00 0.00 0.00 3.72
1954 2453 4.537015 GGCAATCAAAACAGTAGACACAC 58.463 43.478 0.00 0.00 0.00 3.82
1955 2454 3.249799 CGGCAATCAAAACAGTAGACACA 59.750 43.478 0.00 0.00 0.00 3.72
1975 2474 1.442184 CGTCTTCGGTCTGACACGG 60.442 63.158 10.38 0.00 32.09 4.94
1977 2476 1.618861 CATCGTCTTCGGTCTGACAC 58.381 55.000 10.38 0.00 37.69 3.67
1992 2491 3.056536 TGACAGGAAAGACTCTTCCATCG 60.057 47.826 14.80 8.13 46.38 3.84
1995 2494 2.368875 GGTGACAGGAAAGACTCTTCCA 59.631 50.000 14.80 0.00 46.38 3.53
1998 2497 2.036089 GTCGGTGACAGGAAAGACTCTT 59.964 50.000 0.00 0.00 32.09 2.85
2016 2515 1.068472 ACTACCGAAGCAGAGTTGTCG 60.068 52.381 0.00 0.00 0.00 4.35
2055 2554 2.096248 CTACCTCCAAGTCTTCTCGCT 58.904 52.381 0.00 0.00 0.00 4.93
2079 2578 5.872963 TGGACAGCAGATTCATATAGCATT 58.127 37.500 0.00 0.00 0.00 3.56
2087 2586 4.142790 GGATGAATGGACAGCAGATTCAT 58.857 43.478 0.00 0.00 45.31 2.57
2091 2590 2.240414 TGTGGATGAATGGACAGCAGAT 59.760 45.455 0.00 0.00 0.00 2.90
2142 2648 8.321353 AGGGAAACTTCAAAAAGAACTCAATTT 58.679 29.630 0.00 0.00 36.30 1.82
2190 2698 1.825090 TGTCATTGACAGATGCACCC 58.175 50.000 15.41 0.00 37.67 4.61
2203 2711 6.043012 TCCACAAGAAATTTCCCATTGTCATT 59.957 34.615 16.98 0.85 32.01 2.57
2205 2713 4.898265 TCCACAAGAAATTTCCCATTGTCA 59.102 37.500 16.98 7.95 32.01 3.58
2207 2715 5.366477 ACTTCCACAAGAAATTTCCCATTGT 59.634 36.000 14.61 14.86 32.88 2.71
2211 2719 4.959210 TGAACTTCCACAAGAAATTTCCCA 59.041 37.500 14.61 0.00 32.88 4.37
2214 2722 6.419116 GCTTCTGAACTTCCACAAGAAATTTC 59.581 38.462 10.33 10.33 32.88 2.17
2217 2725 4.023707 CGCTTCTGAACTTCCACAAGAAAT 60.024 41.667 0.00 0.00 32.88 2.17
2221 2729 2.213499 ACGCTTCTGAACTTCCACAAG 58.787 47.619 0.00 0.00 35.50 3.16
2226 2734 3.027974 ACAGTACGCTTCTGAACTTCC 57.972 47.619 8.65 0.00 36.81 3.46
2227 2735 4.049186 TCAACAGTACGCTTCTGAACTTC 58.951 43.478 8.65 0.00 36.81 3.01
2233 2741 5.095691 ACAAAATCAACAGTACGCTTCTG 57.904 39.130 1.49 1.49 38.68 3.02
2245 2753 7.253750 GGCATCGATGTAATCAACAAAATCAAC 60.254 37.037 25.47 3.18 45.97 3.18
2271 2779 4.406069 CTGTCGCAACCAAGACATAATTG 58.594 43.478 0.00 0.00 45.03 2.32
2298 2806 4.223144 TCTATTCACATACCTGCTGGCTA 58.777 43.478 9.95 2.20 36.63 3.93
2320 2835 5.298276 GTCTGCTGTCTAGTAGAGTAAGCAT 59.702 44.000 22.84 0.00 44.71 3.79
2339 2854 4.589374 AGGGAGGTAGTATATTGTGTCTGC 59.411 45.833 0.00 0.00 0.00 4.26
2342 2857 7.120923 TGAAAGGGAGGTAGTATATTGTGTC 57.879 40.000 0.00 0.00 0.00 3.67
2344 2859 7.509546 ACATGAAAGGGAGGTAGTATATTGTG 58.490 38.462 0.00 0.00 0.00 3.33
2347 2862 8.568617 AGAACATGAAAGGGAGGTAGTATATT 57.431 34.615 0.00 0.00 0.00 1.28
2350 2865 6.206042 AGAGAACATGAAAGGGAGGTAGTAT 58.794 40.000 0.00 0.00 0.00 2.12
2352 2867 4.430441 AGAGAACATGAAAGGGAGGTAGT 58.570 43.478 0.00 0.00 0.00 2.73
2354 2869 6.023603 AGTAAGAGAACATGAAAGGGAGGTA 58.976 40.000 0.00 0.00 0.00 3.08
2355 2870 4.846940 AGTAAGAGAACATGAAAGGGAGGT 59.153 41.667 0.00 0.00 0.00 3.85
2356 2871 5.428184 AGTAAGAGAACATGAAAGGGAGG 57.572 43.478 0.00 0.00 0.00 4.30
2357 2872 5.123027 GCAAGTAAGAGAACATGAAAGGGAG 59.877 44.000 0.00 0.00 0.00 4.30
2358 2873 5.003804 GCAAGTAAGAGAACATGAAAGGGA 58.996 41.667 0.00 0.00 0.00 4.20
2359 2874 4.761739 TGCAAGTAAGAGAACATGAAAGGG 59.238 41.667 0.00 0.00 0.00 3.95
2360 2875 5.106396 CCTGCAAGTAAGAGAACATGAAAGG 60.106 44.000 0.00 0.00 0.00 3.11
2361 2876 5.106396 CCCTGCAAGTAAGAGAACATGAAAG 60.106 44.000 0.00 0.00 0.00 2.62
2363 2878 4.202461 ACCCTGCAAGTAAGAGAACATGAA 60.202 41.667 0.00 0.00 0.00 2.57
2364 2879 3.327757 ACCCTGCAAGTAAGAGAACATGA 59.672 43.478 0.00 0.00 0.00 3.07
2365 2880 3.679389 ACCCTGCAAGTAAGAGAACATG 58.321 45.455 0.00 0.00 0.00 3.21
2366 2881 4.373156 AACCCTGCAAGTAAGAGAACAT 57.627 40.909 0.00 0.00 0.00 2.71
2367 2882 3.857157 AACCCTGCAAGTAAGAGAACA 57.143 42.857 0.00 0.00 0.00 3.18
2368 2883 4.895961 AGTAACCCTGCAAGTAAGAGAAC 58.104 43.478 0.00 0.00 0.00 3.01
2386 2901 2.010497 TGTTGTGCAGCAAACGAGTAA 58.990 42.857 0.00 0.00 39.03 2.24
2392 2907 0.865639 GACCGTGTTGTGCAGCAAAC 60.866 55.000 0.00 5.12 39.03 2.93
2401 2916 5.416947 GGAATAATAGAGTGACCGTGTTGT 58.583 41.667 0.00 0.00 0.00 3.32
2425 2940 0.680921 TGAATAAGCTGGGCACAGGC 60.681 55.000 19.71 10.29 45.04 4.85
2482 2997 3.721575 AGCAGTTATGGATCAATACCCCA 59.278 43.478 0.00 0.00 0.00 4.96
2785 3300 3.266964 GCATCAGCTTTGCCGTGA 58.733 55.556 7.09 0.00 37.91 4.35
2831 3346 1.672145 GGTCGGCTCACCTGAGTTAAC 60.672 57.143 0.00 0.00 43.85 2.01
2849 3364 3.577389 GCCTATTGCTGAAGGTGGT 57.423 52.632 0.00 0.00 35.16 4.16
2902 3417 0.911769 TAGGTCCAGTCTGCAATGGG 59.088 55.000 11.28 0.48 37.19 4.00
2968 3483 2.046023 CGTGCTCCCCATGCAGAA 60.046 61.111 0.00 0.00 41.41 3.02
3038 3553 7.121463 TGTTCCGTATTAAAAATGTAGTGCCAT 59.879 33.333 0.00 0.00 0.00 4.40
3147 3800 8.821894 GGAGTAGATCTTACATGCTGTTTTAAG 58.178 37.037 0.00 0.00 0.00 1.85
3196 3884 2.156891 CCGTTCCACAATACAAGACGTG 59.843 50.000 0.00 0.00 0.00 4.49
3386 4075 6.878317 TCAGATGAAGACATTAACGAAGGAT 58.122 36.000 0.00 0.00 36.82 3.24
3533 4230 7.592903 GGCATATAAAGAAACAGAAAGCTATGC 59.407 37.037 0.00 0.00 37.86 3.14
3537 4234 6.319911 GGAGGCATATAAAGAAACAGAAAGCT 59.680 38.462 0.00 0.00 0.00 3.74
3687 4384 7.405292 TGGAGAAATGGATGACAAGTATTTCT 58.595 34.615 17.13 17.13 45.56 2.52
3712 4413 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
3790 4493 9.535878 TTCACCATAATGTTTTACAAGGAAAAC 57.464 29.630 12.58 12.58 45.51 2.43
3923 4787 2.093235 GGATTCAGCTACTGCAACCTCT 60.093 50.000 0.00 0.00 42.74 3.69
4115 4980 9.771534 GAGCTTTTCAGGTGATATACTTAAGAT 57.228 33.333 10.09 1.24 0.00 2.40
4116 4981 7.921214 CGAGCTTTTCAGGTGATATACTTAAGA 59.079 37.037 10.09 0.00 0.00 2.10
4117 4982 7.921214 TCGAGCTTTTCAGGTGATATACTTAAG 59.079 37.037 0.00 0.00 0.00 1.85
4118 4983 7.778083 TCGAGCTTTTCAGGTGATATACTTAA 58.222 34.615 0.00 0.00 0.00 1.85
4120 4985 6.222038 TCGAGCTTTTCAGGTGATATACTT 57.778 37.500 0.00 0.00 0.00 2.24
4178 5045 3.445450 CCCTACATATGACGATGAGGGAG 59.555 52.174 10.38 0.00 41.79 4.30
4254 5121 6.757010 ACTGCCATTAAGTTGTCGACTAATAG 59.243 38.462 17.92 8.96 37.72 1.73
4274 5142 3.177997 ACCATGTTTGTGAAAACTGCC 57.822 42.857 3.29 0.00 33.95 4.85
4293 5161 7.061789 ACAAGTTGAAATTTTCGTGAGTTGAAC 59.938 33.333 21.56 12.13 30.88 3.18
4294 5162 7.087639 ACAAGTTGAAATTTTCGTGAGTTGAA 58.912 30.769 21.56 3.69 30.88 2.69
4297 5165 7.087639 TGAACAAGTTGAAATTTTCGTGAGTT 58.912 30.769 10.54 5.80 0.00 3.01
4311 5179 7.857734 TCTTTACAACAGATGAACAAGTTGA 57.142 32.000 10.54 0.00 42.87 3.18
4487 5355 1.824852 ACCTGAAAATTGAATCCGCCC 59.175 47.619 0.00 0.00 0.00 6.13
4514 5382 5.990996 GCTCTCCAGGAAGAGAAAATATCTG 59.009 44.000 16.21 0.00 44.67 2.90
4784 5676 6.203723 CAGCTAAGCTACACTCTCAAGTTTTT 59.796 38.462 0.00 0.00 36.40 1.94
4866 5783 4.727655 GCTACAAGACGACGATACAGTTAC 59.272 45.833 0.00 0.00 0.00 2.50
4900 5817 6.839134 TGCTCAACTAGGATCTTACTCCATTA 59.161 38.462 0.00 0.00 37.81 1.90
4901 5818 5.663106 TGCTCAACTAGGATCTTACTCCATT 59.337 40.000 0.00 0.00 37.81 3.16
4902 5819 5.211973 TGCTCAACTAGGATCTTACTCCAT 58.788 41.667 0.00 0.00 37.81 3.41
5008 5945 6.722590 TGTTCTATGTTTCAGTAGACCAGGTA 59.277 38.462 0.00 0.00 0.00 3.08
5133 6075 3.356290 GGACATTTAGGGACTGCATTGT 58.644 45.455 0.00 0.00 41.52 2.71
5155 6097 1.996292 TTCATCTGTAGCGAGTGTGC 58.004 50.000 0.00 0.00 0.00 4.57
5228 6184 0.772926 GCTACGATGCGACGAATGAG 59.227 55.000 0.00 0.00 37.03 2.90
5231 6187 1.209275 GCTGCTACGATGCGACGAAT 61.209 55.000 0.00 0.00 37.03 3.34
5312 6288 1.135575 CCTTCTGGAAAGCAACGCATC 60.136 52.381 0.00 0.00 34.57 3.91
5317 6293 2.306847 TCCAACCTTCTGGAAAGCAAC 58.693 47.619 0.00 0.00 42.69 4.17
5335 6311 3.623510 GCTGTAGCTGTAAGTTCCAATCC 59.376 47.826 0.00 0.00 38.21 3.01
5347 6323 4.271696 TGACTTATGTTGCTGTAGCTGT 57.728 40.909 5.38 0.00 42.66 4.40
5365 6341 7.307694 TGTTGCATTCTGAATTAGACAATGAC 58.692 34.615 0.00 0.00 34.43 3.06
5429 6413 7.979537 GGTTGAGTTCTTATGTTTCCAAACTTT 59.020 33.333 3.92 0.00 39.59 2.66
5456 6443 7.690228 TGTGTGTGTTAAGAAAATGTAGTGAC 58.310 34.615 0.00 0.00 0.00 3.67
5458 6445 7.113404 GCATGTGTGTGTTAAGAAAATGTAGTG 59.887 37.037 0.00 0.00 0.00 2.74
5479 6466 0.037697 TTTCGTCGCCTGTAGCATGT 60.038 50.000 0.00 0.00 44.04 3.21
5482 6469 0.883153 TAGTTTCGTCGCCTGTAGCA 59.117 50.000 0.00 0.00 44.04 3.49
5536 6525 2.071778 ACAGGTGCAGTTTTGTGGAT 57.928 45.000 0.00 0.00 0.00 3.41
5559 6548 7.883311 AGGAATAAACACTTTTTAGCTAGCTGA 59.117 33.333 27.68 17.10 0.00 4.26
5561 6550 7.883311 TCAGGAATAAACACTTTTTAGCTAGCT 59.117 33.333 23.12 23.12 0.00 3.32
5562 6551 8.040716 TCAGGAATAAACACTTTTTAGCTAGC 57.959 34.615 6.62 6.62 0.00 3.42
5563 6552 9.994432 CATCAGGAATAAACACTTTTTAGCTAG 57.006 33.333 0.00 0.00 0.00 3.42
5564 6553 9.733556 TCATCAGGAATAAACACTTTTTAGCTA 57.266 29.630 0.00 0.00 0.00 3.32
5565 6554 8.635765 TCATCAGGAATAAACACTTTTTAGCT 57.364 30.769 0.00 0.00 0.00 3.32
5574 6563 9.042008 ACGTTATGTATCATCAGGAATAAACAC 57.958 33.333 0.00 0.00 0.00 3.32
5593 6588 5.232414 GCTTCTTCTGCTAGGTTACGTTATG 59.768 44.000 0.00 0.00 0.00 1.90
5636 6670 1.596464 GCGCATGCATTTGCTCTAGTC 60.596 52.381 19.57 0.00 40.54 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.