Multiple sequence alignment - TraesCS5A01G003700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G003700 chr5A 100.000 3575 0 0 1 3575 2618487 2614913 0.000000e+00 6602
1 TraesCS5A01G003700 chr5A 90.581 1274 75 18 706 1977 2430493 2429263 0.000000e+00 1646
2 TraesCS5A01G003700 chr5A 90.771 726 54 6 2148 2871 2429262 2428548 0.000000e+00 957
3 TraesCS5A01G003700 chr5A 95.977 174 2 2 472 641 2430692 2430520 9.780000e-71 278
4 TraesCS5A01G003700 chr5A 82.482 137 14 7 1 137 2430846 2430720 1.050000e-20 111
5 TraesCS5A01G003700 chr5D 91.968 2378 127 26 530 2871 3632412 3634761 0.000000e+00 3275
6 TraesCS5A01G003700 chr5D 91.550 2426 128 27 478 2871 3661336 3658956 0.000000e+00 3273
7 TraesCS5A01G003700 chr5D 91.803 244 17 2 2387 2629 3635069 3635310 1.590000e-88 337
8 TraesCS5A01G003700 chr5D 93.289 149 10 0 2723 2871 3635357 3635505 1.670000e-53 220
9 TraesCS5A01G003700 chr5D 87.755 147 18 0 1 147 3632247 3632393 4.750000e-39 172
10 TraesCS5A01G003700 chr5B 88.977 2268 149 35 472 2721 5073429 5071245 0.000000e+00 2710
11 TraesCS5A01G003700 chr5B 88.624 712 50 15 2872 3575 61707407 61706719 0.000000e+00 837
12 TraesCS5A01G003700 chr5B 85.401 137 18 2 1 137 5594185 5594051 1.340000e-29 141
13 TraesCS5A01G003700 chr7A 87.671 1679 184 9 1016 2691 700300326 700301984 0.000000e+00 1932
14 TraesCS5A01G003700 chr7A 87.493 1679 187 9 1016 2691 700338144 700339802 0.000000e+00 1916
15 TraesCS5A01G003700 chr7D 87.033 1712 184 16 1014 2721 610421486 610419809 0.000000e+00 1897
16 TraesCS5A01G003700 chr7D 79.267 1201 176 35 1475 2657 610708531 610709676 0.000000e+00 771
17 TraesCS5A01G003700 chr7B 86.132 1709 213 12 1014 2719 698682826 698684513 0.000000e+00 1821
18 TraesCS5A01G003700 chr7B 85.270 1738 230 12 988 2721 696238852 696240567 0.000000e+00 1768
19 TraesCS5A01G003700 chr7B 81.408 710 119 11 2872 3575 470853728 470854430 5.180000e-158 568
20 TraesCS5A01G003700 chr7B 86.184 152 18 1 153 304 198618358 198618210 1.030000e-35 161
21 TraesCS5A01G003700 chrUn 85.287 1740 220 15 985 2721 77521407 77523113 0.000000e+00 1762
22 TraesCS5A01G003700 chr4D 88.028 710 77 7 2869 3575 55237865 55237161 0.000000e+00 833
23 TraesCS5A01G003700 chr6A 88.434 709 57 9 2870 3575 591477508 591478194 0.000000e+00 832
24 TraesCS5A01G003700 chr3D 87.482 711 76 12 2871 3575 615402060 615402763 0.000000e+00 808
25 TraesCS5A01G003700 chr3D 83.610 543 77 9 3038 3575 614988066 614988601 1.920000e-137 499
26 TraesCS5A01G003700 chr2B 86.864 708 81 10 2871 3575 22917808 22917110 0.000000e+00 782
27 TraesCS5A01G003700 chr2B 84.835 699 84 21 2887 3573 485748349 485749037 0.000000e+00 684
28 TraesCS5A01G003700 chr4A 79.768 1033 146 34 1631 2657 661998042 661997067 0.000000e+00 691
29 TraesCS5A01G003700 chr2A 86.116 569 73 5 3009 3575 194161898 194161334 3.050000e-170 608
30 TraesCS5A01G003700 chr1D 81.039 712 118 14 2872 3575 83718026 83718728 5.220000e-153 551
31 TraesCS5A01G003700 chr1B 85.526 152 14 5 156 304 162371022 162370876 6.180000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G003700 chr5A 2614913 2618487 3574 True 6602 6602 100.00000 1 3575 1 chr5A.!!$R1 3574
1 TraesCS5A01G003700 chr5A 2428548 2430846 2298 True 748 1646 89.95275 1 2871 4 chr5A.!!$R2 2870
2 TraesCS5A01G003700 chr5D 3658956 3661336 2380 True 3273 3273 91.55000 478 2871 1 chr5D.!!$R1 2393
3 TraesCS5A01G003700 chr5D 3632247 3635505 3258 False 1001 3275 91.20375 1 2871 4 chr5D.!!$F1 2870
4 TraesCS5A01G003700 chr5B 5071245 5073429 2184 True 2710 2710 88.97700 472 2721 1 chr5B.!!$R1 2249
5 TraesCS5A01G003700 chr5B 61706719 61707407 688 True 837 837 88.62400 2872 3575 1 chr5B.!!$R3 703
6 TraesCS5A01G003700 chr7A 700300326 700301984 1658 False 1932 1932 87.67100 1016 2691 1 chr7A.!!$F1 1675
7 TraesCS5A01G003700 chr7A 700338144 700339802 1658 False 1916 1916 87.49300 1016 2691 1 chr7A.!!$F2 1675
8 TraesCS5A01G003700 chr7D 610419809 610421486 1677 True 1897 1897 87.03300 1014 2721 1 chr7D.!!$R1 1707
9 TraesCS5A01G003700 chr7D 610708531 610709676 1145 False 771 771 79.26700 1475 2657 1 chr7D.!!$F1 1182
10 TraesCS5A01G003700 chr7B 698682826 698684513 1687 False 1821 1821 86.13200 1014 2719 1 chr7B.!!$F3 1705
11 TraesCS5A01G003700 chr7B 696238852 696240567 1715 False 1768 1768 85.27000 988 2721 1 chr7B.!!$F2 1733
12 TraesCS5A01G003700 chr7B 470853728 470854430 702 False 568 568 81.40800 2872 3575 1 chr7B.!!$F1 703
13 TraesCS5A01G003700 chrUn 77521407 77523113 1706 False 1762 1762 85.28700 985 2721 1 chrUn.!!$F1 1736
14 TraesCS5A01G003700 chr4D 55237161 55237865 704 True 833 833 88.02800 2869 3575 1 chr4D.!!$R1 706
15 TraesCS5A01G003700 chr6A 591477508 591478194 686 False 832 832 88.43400 2870 3575 1 chr6A.!!$F1 705
16 TraesCS5A01G003700 chr3D 615402060 615402763 703 False 808 808 87.48200 2871 3575 1 chr3D.!!$F2 704
17 TraesCS5A01G003700 chr3D 614988066 614988601 535 False 499 499 83.61000 3038 3575 1 chr3D.!!$F1 537
18 TraesCS5A01G003700 chr2B 22917110 22917808 698 True 782 782 86.86400 2871 3575 1 chr2B.!!$R1 704
19 TraesCS5A01G003700 chr2B 485748349 485749037 688 False 684 684 84.83500 2887 3573 1 chr2B.!!$F1 686
20 TraesCS5A01G003700 chr4A 661997067 661998042 975 True 691 691 79.76800 1631 2657 1 chr4A.!!$R1 1026
21 TraesCS5A01G003700 chr2A 194161334 194161898 564 True 608 608 86.11600 3009 3575 1 chr2A.!!$R1 566
22 TraesCS5A01G003700 chr1D 83718026 83718728 702 False 551 551 81.03900 2872 3575 1 chr1D.!!$F1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.037326 AACCATCGTCTGTGCATCGT 60.037 50.0 0.00 0.00 0.00 3.73 F
289 290 0.042448 GTCCGAAGTTTGTCGTGTGC 60.042 55.0 0.00 0.00 39.43 4.57 F
923 958 0.102481 ATATGTGCGTCCTGGTCGAC 59.898 55.0 17.27 7.13 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2255 0.253327 GGACCTTGAAGCCCTCGAAT 59.747 55.000 0.00 0.0 0.00 3.34 R
2270 2329 2.036414 TGGTCTCCTCGAGCAGCT 59.964 61.111 6.99 0.0 44.63 4.24 R
2919 3753 2.356695 GCATGCATGTGCTATGAGTCAA 59.643 45.455 26.79 0.0 41.82 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.324930 CCCAGCACCTCTCTGCCA 61.325 66.667 0.00 0.00 37.96 4.92
59 60 2.841988 GCCCTCATCTCGGCCTCT 60.842 66.667 0.00 0.00 39.39 3.69
62 63 1.333636 CCCTCATCTCGGCCTCTGTT 61.334 60.000 0.00 0.00 0.00 3.16
66 67 0.534412 CATCTCGGCCTCTGTTCTGT 59.466 55.000 0.00 0.00 0.00 3.41
87 88 0.254462 CCTTGCCTCCTCCTTCCTTC 59.746 60.000 0.00 0.00 0.00 3.46
89 90 0.178861 TTGCCTCCTCCTTCCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
97 98 2.079925 CTCCTTCCTTCCTCGCAAAAG 58.920 52.381 0.00 0.00 0.00 2.27
100 101 2.494059 CTTCCTTCCTCGCAAAAGTCA 58.506 47.619 0.00 0.00 0.00 3.41
143 144 8.181487 TCAGTTAACTTACATAGAATCGTTGC 57.819 34.615 5.07 0.00 0.00 4.17
144 145 7.008901 TCAGTTAACTTACATAGAATCGTTGCG 59.991 37.037 5.07 0.00 0.00 4.85
145 146 7.008901 CAGTTAACTTACATAGAATCGTTGCGA 59.991 37.037 5.07 0.00 41.13 5.10
147 148 6.512177 AACTTACATAGAATCGTTGCGATC 57.488 37.500 4.46 0.00 46.30 3.69
148 149 5.588240 ACTTACATAGAATCGTTGCGATCA 58.412 37.500 4.46 0.00 46.30 2.92
149 150 5.459107 ACTTACATAGAATCGTTGCGATCAC 59.541 40.000 4.46 3.21 46.30 3.06
150 151 2.789339 ACATAGAATCGTTGCGATCACG 59.211 45.455 4.46 0.00 46.30 4.35
151 152 2.836479 TAGAATCGTTGCGATCACGA 57.164 45.000 8.94 8.94 46.30 4.35
152 153 1.990799 AGAATCGTTGCGATCACGAA 58.009 45.000 10.36 0.00 46.30 3.85
153 154 2.333926 AGAATCGTTGCGATCACGAAA 58.666 42.857 10.36 0.00 46.30 3.46
158 159 2.912986 TTGCGATCACGAAACTGCT 58.087 47.368 0.00 0.00 42.66 4.24
159 160 0.790207 TTGCGATCACGAAACTGCTC 59.210 50.000 0.00 0.00 42.66 4.26
160 161 1.014044 TGCGATCACGAAACTGCTCC 61.014 55.000 0.00 0.00 42.66 4.70
161 162 1.014044 GCGATCACGAAACTGCTCCA 61.014 55.000 0.00 0.00 42.66 3.86
162 163 1.645034 CGATCACGAAACTGCTCCAT 58.355 50.000 0.00 0.00 42.66 3.41
163 164 1.325640 CGATCACGAAACTGCTCCATG 59.674 52.381 0.00 0.00 42.66 3.66
164 165 1.063174 GATCACGAAACTGCTCCATGC 59.937 52.381 0.00 0.00 43.25 4.06
175 176 1.869774 GCTCCATGCACGATGATACA 58.130 50.000 0.00 0.00 42.31 2.29
176 177 2.212652 GCTCCATGCACGATGATACAA 58.787 47.619 0.00 0.00 42.31 2.41
177 178 2.222678 GCTCCATGCACGATGATACAAG 59.777 50.000 0.00 0.00 42.31 3.16
178 179 3.461061 CTCCATGCACGATGATACAAGT 58.539 45.455 0.00 0.00 33.31 3.16
179 180 3.197265 TCCATGCACGATGATACAAGTG 58.803 45.455 0.00 0.00 33.31 3.16
180 181 2.938451 CCATGCACGATGATACAAGTGT 59.062 45.455 0.00 0.00 36.99 3.55
181 182 4.119136 CCATGCACGATGATACAAGTGTA 58.881 43.478 0.00 0.00 36.99 2.90
182 183 4.751600 CCATGCACGATGATACAAGTGTAT 59.248 41.667 3.60 3.60 43.38 2.29
183 184 5.673029 CATGCACGATGATACAAGTGTATG 58.327 41.667 8.67 18.03 45.65 2.39
184 185 5.004922 TGCACGATGATACAAGTGTATGA 57.995 39.130 8.67 0.84 40.99 2.15
185 186 5.600696 TGCACGATGATACAAGTGTATGAT 58.399 37.500 8.67 5.94 40.99 2.45
186 187 6.048509 TGCACGATGATACAAGTGTATGATT 58.951 36.000 8.67 0.00 40.99 2.57
187 188 6.538381 TGCACGATGATACAAGTGTATGATTT 59.462 34.615 8.67 0.00 40.99 2.17
188 189 7.708752 TGCACGATGATACAAGTGTATGATTTA 59.291 33.333 8.67 0.00 40.99 1.40
189 190 8.712363 GCACGATGATACAAGTGTATGATTTAT 58.288 33.333 8.67 0.00 40.99 1.40
191 192 9.208022 ACGATGATACAAGTGTATGATTTATGG 57.792 33.333 8.67 1.18 40.99 2.74
192 193 9.423061 CGATGATACAAGTGTATGATTTATGGA 57.577 33.333 8.67 0.00 40.99 3.41
195 196 9.898152 TGATACAAGTGTATGATTTATGGACAA 57.102 29.630 8.67 0.00 40.99 3.18
197 198 7.994425 ACAAGTGTATGATTTATGGACAACA 57.006 32.000 0.00 0.00 0.00 3.33
198 199 8.579850 ACAAGTGTATGATTTATGGACAACAT 57.420 30.769 0.00 0.00 43.68 2.71
199 200 9.679661 ACAAGTGTATGATTTATGGACAACATA 57.320 29.630 0.00 0.00 41.03 2.29
201 202 8.383318 AGTGTATGATTTATGGACAACATAGC 57.617 34.615 0.00 0.00 42.69 2.97
202 203 7.171508 AGTGTATGATTTATGGACAACATAGCG 59.828 37.037 0.00 0.00 42.69 4.26
203 204 7.170828 GTGTATGATTTATGGACAACATAGCGA 59.829 37.037 0.00 0.00 42.69 4.93
204 205 7.877612 TGTATGATTTATGGACAACATAGCGAT 59.122 33.333 0.00 0.00 42.69 4.58
205 206 6.785488 TGATTTATGGACAACATAGCGATC 57.215 37.500 0.00 0.00 42.69 3.69
206 207 5.700832 TGATTTATGGACAACATAGCGATCC 59.299 40.000 0.00 0.00 42.69 3.36
207 208 4.681074 TTATGGACAACATAGCGATCCA 57.319 40.909 0.00 0.00 42.69 3.41
208 209 2.602257 TGGACAACATAGCGATCCAG 57.398 50.000 0.00 0.00 34.50 3.86
209 210 1.221414 GGACAACATAGCGATCCAGC 58.779 55.000 0.00 0.00 37.41 4.85
210 211 0.855349 GACAACATAGCGATCCAGCG 59.145 55.000 0.00 0.00 43.00 5.18
211 212 0.530650 ACAACATAGCGATCCAGCGG 60.531 55.000 0.00 0.00 43.00 5.52
212 213 1.595382 AACATAGCGATCCAGCGGC 60.595 57.895 0.00 0.00 43.00 6.53
213 214 2.740055 CATAGCGATCCAGCGGCC 60.740 66.667 0.00 0.00 43.00 6.13
214 215 4.363990 ATAGCGATCCAGCGGCCG 62.364 66.667 24.05 24.05 43.00 6.13
225 226 4.700365 GCGGCCGGCAACTTGTTC 62.700 66.667 30.85 6.91 42.87 3.18
226 227 3.283684 CGGCCGGCAACTTGTTCA 61.284 61.111 30.85 0.00 0.00 3.18
227 228 2.840066 CGGCCGGCAACTTGTTCAA 61.840 57.895 30.85 0.00 0.00 2.69
228 229 1.665442 GGCCGGCAACTTGTTCAAT 59.335 52.632 30.85 0.00 0.00 2.57
229 230 0.388520 GGCCGGCAACTTGTTCAATC 60.389 55.000 30.85 0.98 0.00 2.67
230 231 0.313672 GCCGGCAACTTGTTCAATCA 59.686 50.000 24.80 0.00 0.00 2.57
231 232 1.067635 GCCGGCAACTTGTTCAATCAT 60.068 47.619 24.80 0.00 0.00 2.45
232 233 2.163412 GCCGGCAACTTGTTCAATCATA 59.837 45.455 24.80 0.00 0.00 2.15
233 234 3.758300 CCGGCAACTTGTTCAATCATAC 58.242 45.455 0.00 0.00 0.00 2.39
234 235 3.440173 CCGGCAACTTGTTCAATCATACT 59.560 43.478 0.00 0.00 0.00 2.12
235 236 4.634004 CCGGCAACTTGTTCAATCATACTA 59.366 41.667 0.00 0.00 0.00 1.82
236 237 5.123186 CCGGCAACTTGTTCAATCATACTAA 59.877 40.000 0.00 0.00 0.00 2.24
237 238 6.183360 CCGGCAACTTGTTCAATCATACTAAT 60.183 38.462 0.00 0.00 0.00 1.73
238 239 6.688385 CGGCAACTTGTTCAATCATACTAATG 59.312 38.462 0.00 0.00 0.00 1.90
239 240 7.538575 GGCAACTTGTTCAATCATACTAATGT 58.461 34.615 0.00 0.00 34.50 2.71
240 241 7.698130 GGCAACTTGTTCAATCATACTAATGTC 59.302 37.037 0.00 0.00 34.50 3.06
241 242 7.698130 GCAACTTGTTCAATCATACTAATGTCC 59.302 37.037 0.00 0.00 34.50 4.02
242 243 8.729756 CAACTTGTTCAATCATACTAATGTCCA 58.270 33.333 0.00 0.00 34.50 4.02
243 244 9.466497 AACTTGTTCAATCATACTAATGTCCAT 57.534 29.630 0.00 0.00 34.50 3.41
244 245 9.113838 ACTTGTTCAATCATACTAATGTCCATC 57.886 33.333 0.00 0.00 34.50 3.51
245 246 8.450578 TTGTTCAATCATACTAATGTCCATCC 57.549 34.615 0.00 0.00 34.50 3.51
246 247 7.572814 TGTTCAATCATACTAATGTCCATCCA 58.427 34.615 0.00 0.00 34.50 3.41
247 248 7.716560 TGTTCAATCATACTAATGTCCATCCAG 59.283 37.037 0.00 0.00 34.50 3.86
248 249 7.616528 TCAATCATACTAATGTCCATCCAGA 57.383 36.000 0.00 0.00 34.50 3.86
249 250 8.211030 TCAATCATACTAATGTCCATCCAGAT 57.789 34.615 0.00 0.00 34.50 2.90
250 251 8.663167 TCAATCATACTAATGTCCATCCAGATT 58.337 33.333 0.00 0.00 34.50 2.40
251 252 9.293404 CAATCATACTAATGTCCATCCAGATTT 57.707 33.333 0.00 0.00 34.50 2.17
254 255 9.778741 TCATACTAATGTCCATCCAGATTTAAC 57.221 33.333 0.00 0.00 34.50 2.01
255 256 9.003658 CATACTAATGTCCATCCAGATTTAACC 57.996 37.037 0.00 0.00 0.00 2.85
256 257 6.969043 ACTAATGTCCATCCAGATTTAACCA 58.031 36.000 0.00 0.00 0.00 3.67
257 258 7.586349 ACTAATGTCCATCCAGATTTAACCAT 58.414 34.615 0.00 0.00 0.00 3.55
258 259 6.966534 AATGTCCATCCAGATTTAACCATC 57.033 37.500 0.00 0.00 0.00 3.51
259 260 4.450976 TGTCCATCCAGATTTAACCATCG 58.549 43.478 0.00 0.00 0.00 3.84
260 261 4.080582 TGTCCATCCAGATTTAACCATCGT 60.081 41.667 0.00 0.00 0.00 3.73
261 262 4.511826 GTCCATCCAGATTTAACCATCGTC 59.488 45.833 0.00 0.00 0.00 4.20
262 263 4.408921 TCCATCCAGATTTAACCATCGTCT 59.591 41.667 0.00 0.00 0.00 4.18
263 264 4.512944 CCATCCAGATTTAACCATCGTCTG 59.487 45.833 0.00 0.00 36.83 3.51
264 265 4.819105 TCCAGATTTAACCATCGTCTGT 57.181 40.909 0.00 0.00 35.66 3.41
265 266 4.503910 TCCAGATTTAACCATCGTCTGTG 58.496 43.478 0.00 0.00 35.66 3.66
266 267 3.063997 CCAGATTTAACCATCGTCTGTGC 59.936 47.826 0.00 0.00 35.66 4.57
267 268 3.684305 CAGATTTAACCATCGTCTGTGCA 59.316 43.478 0.00 0.00 33.42 4.57
268 269 4.333649 CAGATTTAACCATCGTCTGTGCAT 59.666 41.667 0.00 0.00 33.42 3.96
269 270 4.572389 AGATTTAACCATCGTCTGTGCATC 59.428 41.667 0.00 0.00 0.00 3.91
270 271 1.921243 TAACCATCGTCTGTGCATCG 58.079 50.000 0.00 0.00 0.00 3.84
271 272 0.037326 AACCATCGTCTGTGCATCGT 60.037 50.000 0.00 0.00 0.00 3.73
272 273 0.458543 ACCATCGTCTGTGCATCGTC 60.459 55.000 0.00 0.00 0.00 4.20
273 274 1.148157 CCATCGTCTGTGCATCGTCC 61.148 60.000 0.00 0.00 0.00 4.79
274 275 1.226688 ATCGTCTGTGCATCGTCCG 60.227 57.895 0.00 0.00 0.00 4.79
275 276 1.654023 ATCGTCTGTGCATCGTCCGA 61.654 55.000 0.00 0.00 0.00 4.55
276 277 1.443702 CGTCTGTGCATCGTCCGAA 60.444 57.895 0.00 0.00 0.00 4.30
277 278 1.406219 CGTCTGTGCATCGTCCGAAG 61.406 60.000 0.00 0.00 0.00 3.79
278 279 0.388649 GTCTGTGCATCGTCCGAAGT 60.389 55.000 0.00 0.00 0.00 3.01
279 280 0.317160 TCTGTGCATCGTCCGAAGTT 59.683 50.000 0.00 0.00 0.00 2.66
280 281 1.148310 CTGTGCATCGTCCGAAGTTT 58.852 50.000 0.00 0.00 0.00 2.66
281 282 0.865111 TGTGCATCGTCCGAAGTTTG 59.135 50.000 0.00 0.00 0.00 2.93
282 283 0.865769 GTGCATCGTCCGAAGTTTGT 59.134 50.000 0.00 0.00 0.00 2.83
283 284 1.136336 GTGCATCGTCCGAAGTTTGTC 60.136 52.381 0.00 0.00 0.00 3.18
284 285 0.093026 GCATCGTCCGAAGTTTGTCG 59.907 55.000 0.00 0.00 40.77 4.35
285 286 1.415374 CATCGTCCGAAGTTTGTCGT 58.585 50.000 0.00 0.00 39.43 4.34
286 287 1.124297 CATCGTCCGAAGTTTGTCGTG 59.876 52.381 0.00 1.66 39.43 4.35
287 288 0.101040 TCGTCCGAAGTTTGTCGTGT 59.899 50.000 0.00 0.00 39.43 4.49
288 289 0.228742 CGTCCGAAGTTTGTCGTGTG 59.771 55.000 0.00 0.00 39.43 3.82
289 290 0.042448 GTCCGAAGTTTGTCGTGTGC 60.042 55.000 0.00 0.00 39.43 4.57
290 291 0.460459 TCCGAAGTTTGTCGTGTGCA 60.460 50.000 0.00 0.00 39.43 4.57
291 292 0.586319 CCGAAGTTTGTCGTGTGCAT 59.414 50.000 0.00 0.00 39.43 3.96
292 293 1.795872 CCGAAGTTTGTCGTGTGCATA 59.204 47.619 0.00 0.00 39.43 3.14
293 294 2.159841 CCGAAGTTTGTCGTGTGCATAG 60.160 50.000 0.00 0.00 39.43 2.23
294 295 2.721797 CGAAGTTTGTCGTGTGCATAGC 60.722 50.000 0.00 0.00 36.26 2.97
295 296 1.877637 AGTTTGTCGTGTGCATAGCA 58.122 45.000 0.00 0.00 35.60 3.49
309 310 5.300969 TGCATAGCACTTCTTTTGTGATC 57.699 39.130 0.00 0.00 37.60 2.92
310 311 4.761227 TGCATAGCACTTCTTTTGTGATCA 59.239 37.500 0.00 0.00 37.60 2.92
311 312 5.241285 TGCATAGCACTTCTTTTGTGATCAA 59.759 36.000 0.00 0.00 37.60 2.57
312 313 6.071784 TGCATAGCACTTCTTTTGTGATCAAT 60.072 34.615 0.00 0.00 37.60 2.57
313 314 7.121020 TGCATAGCACTTCTTTTGTGATCAATA 59.879 33.333 0.00 0.00 37.60 1.90
314 315 8.133627 GCATAGCACTTCTTTTGTGATCAATAT 58.866 33.333 0.00 0.00 37.60 1.28
315 316 9.661187 CATAGCACTTCTTTTGTGATCAATATC 57.339 33.333 0.00 0.00 37.60 1.63
316 317 7.692460 AGCACTTCTTTTGTGATCAATATCA 57.308 32.000 0.00 0.00 39.87 2.15
317 318 8.114331 AGCACTTCTTTTGTGATCAATATCAA 57.886 30.769 0.00 0.00 43.69 2.57
318 319 8.579006 AGCACTTCTTTTGTGATCAATATCAAA 58.421 29.630 0.00 0.62 43.69 2.69
319 320 9.195411 GCACTTCTTTTGTGATCAATATCAAAA 57.805 29.630 16.56 16.56 43.69 2.44
329 330 9.936759 TGTGATCAATATCAAAACTACTACACA 57.063 29.630 0.00 0.00 43.69 3.72
331 332 9.936759 TGATCAATATCAAAACTACTACACACA 57.063 29.630 0.00 0.00 39.20 3.72
333 334 8.234887 TCAATATCAAAACTACTACACACACG 57.765 34.615 0.00 0.00 0.00 4.49
334 335 8.083462 TCAATATCAAAACTACTACACACACGA 58.917 33.333 0.00 0.00 0.00 4.35
335 336 8.869897 CAATATCAAAACTACTACACACACGAT 58.130 33.333 0.00 0.00 0.00 3.73
336 337 6.706055 ATCAAAACTACTACACACACGATG 57.294 37.500 0.00 0.00 0.00 3.84
337 338 5.593968 TCAAAACTACTACACACACGATGT 58.406 37.500 0.00 0.00 44.81 3.06
338 339 5.688621 TCAAAACTACTACACACACGATGTC 59.311 40.000 0.00 0.00 40.64 3.06
339 340 5.449107 AAACTACTACACACACGATGTCT 57.551 39.130 0.00 0.00 40.64 3.41
340 341 5.449107 AACTACTACACACACGATGTCTT 57.551 39.130 0.00 0.00 40.64 3.01
341 342 5.449107 ACTACTACACACACGATGTCTTT 57.551 39.130 0.00 0.00 40.64 2.52
342 343 5.839621 ACTACTACACACACGATGTCTTTT 58.160 37.500 0.00 0.00 40.64 2.27
343 344 5.690409 ACTACTACACACACGATGTCTTTTG 59.310 40.000 0.00 0.00 40.64 2.44
344 345 2.755836 ACACACACGATGTCTTTTGC 57.244 45.000 0.00 0.00 40.64 3.68
345 346 2.013400 ACACACACGATGTCTTTTGCA 58.987 42.857 0.00 0.00 40.64 4.08
346 347 2.223249 ACACACACGATGTCTTTTGCAC 60.223 45.455 0.00 0.00 40.64 4.57
347 348 1.003972 ACACACGATGTCTTTTGCACG 60.004 47.619 0.00 0.00 36.54 5.34
348 349 1.260297 CACACGATGTCTTTTGCACGA 59.740 47.619 0.00 0.00 0.00 4.35
349 350 2.096268 CACACGATGTCTTTTGCACGAT 60.096 45.455 0.00 0.00 0.00 3.73
350 351 2.096268 ACACGATGTCTTTTGCACGATG 60.096 45.455 0.00 0.00 0.00 3.84
351 352 1.135972 ACGATGTCTTTTGCACGATGC 60.136 47.619 0.00 0.00 45.29 3.91
352 353 1.129251 CGATGTCTTTTGCACGATGCT 59.871 47.619 10.54 0.00 45.31 3.79
353 354 2.348362 CGATGTCTTTTGCACGATGCTA 59.652 45.455 10.54 1.67 45.31 3.49
354 355 3.542875 CGATGTCTTTTGCACGATGCTAG 60.543 47.826 10.54 0.00 45.31 3.42
355 356 1.464608 TGTCTTTTGCACGATGCTAGC 59.535 47.619 8.10 8.10 45.31 3.42
356 357 1.464608 GTCTTTTGCACGATGCTAGCA 59.535 47.619 21.85 21.85 45.31 3.49
357 358 1.464608 TCTTTTGCACGATGCTAGCAC 59.535 47.619 22.07 13.05 45.31 4.40
358 359 0.165727 TTTTGCACGATGCTAGCACG 59.834 50.000 26.96 26.96 45.31 5.34
359 360 0.669012 TTTGCACGATGCTAGCACGA 60.669 50.000 31.94 14.99 45.31 4.35
360 361 0.460109 TTGCACGATGCTAGCACGAT 60.460 50.000 31.94 16.08 45.31 3.73
361 362 0.383949 TGCACGATGCTAGCACGATA 59.616 50.000 31.94 20.02 45.31 2.92
362 363 1.056103 GCACGATGCTAGCACGATAG 58.944 55.000 31.94 23.91 40.96 2.08
363 364 1.600663 GCACGATGCTAGCACGATAGT 60.601 52.381 31.94 20.40 46.98 2.12
364 365 2.350484 GCACGATGCTAGCACGATAGTA 60.350 50.000 31.94 7.94 45.01 1.82
365 366 3.852205 GCACGATGCTAGCACGATAGTAA 60.852 47.826 31.94 7.28 45.01 2.24
366 367 5.313641 GCACGATGCTAGCACGATAGTAAA 61.314 45.833 31.94 6.61 45.01 2.01
367 368 6.574892 GCACGATGCTAGCACGATAGTAAAT 61.575 44.000 31.94 12.14 45.01 1.40
368 369 8.278782 GCACGATGCTAGCACGATAGTAAATC 62.279 46.154 31.94 17.91 45.01 2.17
380 381 4.923871 CGATAGTAAATCCAACGATCTGGG 59.076 45.833 1.40 0.00 37.06 4.45
381 382 5.509163 CGATAGTAAATCCAACGATCTGGGT 60.509 44.000 1.40 0.00 37.06 4.51
382 383 4.569719 AGTAAATCCAACGATCTGGGTT 57.430 40.909 1.40 0.00 41.82 4.11
383 384 4.514401 AGTAAATCCAACGATCTGGGTTC 58.486 43.478 0.23 0.00 38.95 3.62
384 385 2.024176 AATCCAACGATCTGGGTTCG 57.976 50.000 1.40 0.00 34.53 3.95
389 390 2.540145 ACGATCTGGGTTCGTTTGC 58.460 52.632 0.00 0.00 46.96 3.68
390 391 0.953960 ACGATCTGGGTTCGTTTGCC 60.954 55.000 0.00 0.00 46.96 4.52
391 392 1.644786 CGATCTGGGTTCGTTTGCCC 61.645 60.000 0.00 0.00 45.04 5.36
395 396 3.850508 GGGTTCGTTTGCCCAAGT 58.149 55.556 0.00 0.00 44.23 3.16
396 397 1.362355 GGGTTCGTTTGCCCAAGTG 59.638 57.895 0.00 0.00 44.23 3.16
397 398 1.388837 GGGTTCGTTTGCCCAAGTGT 61.389 55.000 0.00 0.00 44.23 3.55
398 399 0.458260 GGTTCGTTTGCCCAAGTGTT 59.542 50.000 0.00 0.00 0.00 3.32
399 400 1.555477 GTTCGTTTGCCCAAGTGTTG 58.445 50.000 0.00 0.00 0.00 3.33
400 401 1.135228 GTTCGTTTGCCCAAGTGTTGT 60.135 47.619 0.00 0.00 0.00 3.32
401 402 2.039818 TCGTTTGCCCAAGTGTTGTA 57.960 45.000 0.00 0.00 0.00 2.41
402 403 1.944024 TCGTTTGCCCAAGTGTTGTAG 59.056 47.619 0.00 0.00 0.00 2.74
403 404 1.001815 CGTTTGCCCAAGTGTTGTAGG 60.002 52.381 0.00 0.00 0.00 3.18
404 405 1.339929 GTTTGCCCAAGTGTTGTAGGG 59.660 52.381 0.00 0.00 44.37 3.53
405 406 0.553819 TTGCCCAAGTGTTGTAGGGT 59.446 50.000 0.00 0.00 43.42 4.34
406 407 0.109723 TGCCCAAGTGTTGTAGGGTC 59.890 55.000 0.00 0.00 43.42 4.46
407 408 0.953960 GCCCAAGTGTTGTAGGGTCG 60.954 60.000 0.00 0.00 43.42 4.79
408 409 0.321298 CCCAAGTGTTGTAGGGTCGG 60.321 60.000 0.00 0.00 36.52 4.79
409 410 0.682852 CCAAGTGTTGTAGGGTCGGA 59.317 55.000 0.00 0.00 0.00 4.55
410 411 1.278127 CCAAGTGTTGTAGGGTCGGAT 59.722 52.381 0.00 0.00 0.00 4.18
411 412 2.618053 CAAGTGTTGTAGGGTCGGATC 58.382 52.381 0.00 0.00 0.00 3.36
412 413 1.933021 AGTGTTGTAGGGTCGGATCA 58.067 50.000 0.00 0.00 0.00 2.92
413 414 1.549170 AGTGTTGTAGGGTCGGATCAC 59.451 52.381 0.00 0.00 0.00 3.06
414 415 1.274167 GTGTTGTAGGGTCGGATCACA 59.726 52.381 0.00 0.00 0.00 3.58
415 416 1.548719 TGTTGTAGGGTCGGATCACAG 59.451 52.381 0.00 0.00 0.00 3.66
416 417 0.535335 TTGTAGGGTCGGATCACAGC 59.465 55.000 0.00 0.00 0.00 4.40
417 418 1.327690 TGTAGGGTCGGATCACAGCC 61.328 60.000 0.00 0.00 0.00 4.85
418 419 1.001120 TAGGGTCGGATCACAGCCA 59.999 57.895 12.51 0.00 32.14 4.75
419 420 0.398522 TAGGGTCGGATCACAGCCAT 60.399 55.000 12.51 1.72 32.14 4.40
420 421 1.227674 GGGTCGGATCACAGCCATC 60.228 63.158 6.51 0.00 0.00 3.51
421 422 1.522092 GGTCGGATCACAGCCATCA 59.478 57.895 0.00 0.00 0.00 3.07
422 423 0.107456 GGTCGGATCACAGCCATCAT 59.893 55.000 0.00 0.00 0.00 2.45
423 424 1.506493 GTCGGATCACAGCCATCATC 58.494 55.000 0.00 0.00 0.00 2.92
424 425 0.394192 TCGGATCACAGCCATCATCC 59.606 55.000 0.00 0.00 32.75 3.51
425 426 0.107268 CGGATCACAGCCATCATCCA 59.893 55.000 0.00 0.00 35.42 3.41
426 427 1.602311 GGATCACAGCCATCATCCAC 58.398 55.000 0.00 0.00 35.72 4.02
427 428 1.134007 GGATCACAGCCATCATCCACA 60.134 52.381 0.00 0.00 35.72 4.17
428 429 2.646930 GATCACAGCCATCATCCACAA 58.353 47.619 0.00 0.00 0.00 3.33
429 430 2.583024 TCACAGCCATCATCCACAAA 57.417 45.000 0.00 0.00 0.00 2.83
430 431 3.090210 TCACAGCCATCATCCACAAAT 57.910 42.857 0.00 0.00 0.00 2.32
431 432 3.018856 TCACAGCCATCATCCACAAATC 58.981 45.455 0.00 0.00 0.00 2.17
432 433 2.019249 ACAGCCATCATCCACAAATCG 58.981 47.619 0.00 0.00 0.00 3.34
433 434 2.019249 CAGCCATCATCCACAAATCGT 58.981 47.619 0.00 0.00 0.00 3.73
434 435 2.019249 AGCCATCATCCACAAATCGTG 58.981 47.619 0.00 0.00 45.92 4.35
435 436 1.534595 GCCATCATCCACAAATCGTGC 60.535 52.381 0.00 0.00 44.91 5.34
436 437 1.744522 CCATCATCCACAAATCGTGCA 59.255 47.619 0.00 0.00 44.91 4.57
437 438 2.478370 CCATCATCCACAAATCGTGCAC 60.478 50.000 6.82 6.82 44.91 4.57
438 439 0.795698 TCATCCACAAATCGTGCACG 59.204 50.000 32.76 32.76 44.91 5.34
459 460 5.298197 CGAACTATCGTCCATATAGCACT 57.702 43.478 0.00 0.00 44.06 4.40
460 461 5.089411 CGAACTATCGTCCATATAGCACTG 58.911 45.833 0.00 0.00 44.06 3.66
461 462 4.442375 ACTATCGTCCATATAGCACTGC 57.558 45.455 0.00 0.00 31.31 4.40
462 463 4.082845 ACTATCGTCCATATAGCACTGCT 58.917 43.478 8.95 8.95 43.41 4.24
463 464 3.584406 ATCGTCCATATAGCACTGCTC 57.416 47.619 6.86 0.00 40.44 4.26
464 465 2.306847 TCGTCCATATAGCACTGCTCA 58.693 47.619 6.86 0.00 40.44 4.26
601 612 2.130272 ATACTCGGCTGTCAGTCTCA 57.870 50.000 2.39 0.00 0.00 3.27
819 831 0.906756 TCCTCCTCACCTGCTCCAAG 60.907 60.000 0.00 0.00 0.00 3.61
885 920 3.118408 TCAACCTAAGCAGATTACCGCAT 60.118 43.478 0.00 0.00 0.00 4.73
898 933 0.742505 ACCGCATGAATCATTGGCAG 59.257 50.000 10.29 0.29 0.00 4.85
899 934 0.742505 CCGCATGAATCATTGGCAGT 59.257 50.000 0.00 0.00 0.00 4.40
900 935 1.948834 CCGCATGAATCATTGGCAGTA 59.051 47.619 0.00 0.00 0.00 2.74
916 951 4.709886 TGGCAGTATATATATGTGCGTCCT 59.290 41.667 18.52 0.00 34.86 3.85
923 958 0.102481 ATATGTGCGTCCTGGTCGAC 59.898 55.000 17.27 7.13 0.00 4.20
939 974 2.094182 GTCGACCTACAGCTTTCCATCA 60.094 50.000 3.51 0.00 0.00 3.07
940 975 2.565391 TCGACCTACAGCTTTCCATCAA 59.435 45.455 0.00 0.00 0.00 2.57
942 977 3.274288 GACCTACAGCTTTCCATCAAGG 58.726 50.000 0.00 0.00 39.47 3.61
959 994 2.954611 GCAAGACCGCCCAAAGAC 59.045 61.111 0.00 0.00 0.00 3.01
960 995 2.966309 GCAAGACCGCCCAAAGACG 61.966 63.158 0.00 0.00 0.00 4.18
961 996 2.668550 AAGACCGCCCAAAGACGC 60.669 61.111 0.00 0.00 0.00 5.19
965 1000 3.726517 CCGCCCAAAGACGCACAG 61.727 66.667 0.00 0.00 0.00 3.66
968 1003 2.629656 GCCCAAAGACGCACAGCAT 61.630 57.895 0.00 0.00 0.00 3.79
972 1007 1.202110 CCAAAGACGCACAGCATCATC 60.202 52.381 0.00 0.00 0.00 2.92
973 1008 1.736126 CAAAGACGCACAGCATCATCT 59.264 47.619 0.00 0.00 0.00 2.90
974 1009 2.105006 AAGACGCACAGCATCATCTT 57.895 45.000 0.00 0.00 0.00 2.40
975 1010 1.649664 AGACGCACAGCATCATCTTC 58.350 50.000 0.00 0.00 0.00 2.87
976 1011 0.654683 GACGCACAGCATCATCTTCC 59.345 55.000 0.00 0.00 0.00 3.46
977 1012 0.251354 ACGCACAGCATCATCTTCCT 59.749 50.000 0.00 0.00 0.00 3.36
978 1013 0.935898 CGCACAGCATCATCTTCCTC 59.064 55.000 0.00 0.00 0.00 3.71
979 1014 1.472904 CGCACAGCATCATCTTCCTCT 60.473 52.381 0.00 0.00 0.00 3.69
980 1015 1.941294 GCACAGCATCATCTTCCTCTG 59.059 52.381 0.00 0.00 0.00 3.35
981 1016 2.680221 GCACAGCATCATCTTCCTCTGT 60.680 50.000 0.00 0.00 35.42 3.41
982 1017 3.196463 CACAGCATCATCTTCCTCTGTC 58.804 50.000 0.00 0.00 33.08 3.51
983 1018 2.170187 ACAGCATCATCTTCCTCTGTCC 59.830 50.000 0.00 0.00 29.81 4.02
1069 1108 0.179097 GACCGTCATCTTCCTCTGGC 60.179 60.000 0.00 0.00 0.00 4.85
1083 1122 4.196778 TGGCCCGTGGTGCAGAAA 62.197 61.111 0.00 0.00 0.00 2.52
1110 1149 1.766461 CCCCACCTTCCGCCTCTAT 60.766 63.158 0.00 0.00 0.00 1.98
1329 1368 2.623915 CGACGACCACGAGGAGGTT 61.624 63.158 5.68 0.00 40.09 3.50
1402 1441 1.073025 AAGGCCAACGTCATCAGCA 59.927 52.632 5.01 0.00 0.00 4.41
1497 1536 1.296715 CTACCTGCCCTTCGTGCTT 59.703 57.895 0.00 0.00 0.00 3.91
1561 1600 1.447317 CTTCACCAACAACGCCAGCT 61.447 55.000 0.00 0.00 0.00 4.24
1923 1982 2.420058 TAGAGGACATCGACTGCTCA 57.580 50.000 13.80 0.87 0.00 4.26
1926 1985 3.291584 AGAGGACATCGACTGCTCAATA 58.708 45.455 13.80 0.00 0.00 1.90
1935 1994 2.425312 CGACTGCTCAATAGACCTCACT 59.575 50.000 0.00 0.00 0.00 3.41
1944 2003 4.039973 TCAATAGACCTCACTGGAAAACGT 59.960 41.667 0.00 0.00 39.71 3.99
1971 2030 2.769095 GGACAAGAAGGCCTCTAGTGAT 59.231 50.000 5.23 0.00 44.70 3.06
2026 2085 2.034878 CGATGGATCCAGAGAAGGACA 58.965 52.381 21.33 0.00 41.30 4.02
2034 2093 1.004044 CCAGAGAAGGACAATGCCACT 59.996 52.381 0.00 0.00 0.00 4.00
2118 2177 2.484417 GCGGATCATCATCTTCACCACT 60.484 50.000 0.00 0.00 0.00 4.00
2196 2255 1.675552 TCGAGATGTCATACTGCCGA 58.324 50.000 0.00 0.00 0.00 5.54
2214 2273 1.657822 GATTCGAGGGCTTCAAGGTC 58.342 55.000 0.00 0.00 0.00 3.85
2242 2301 6.341316 GCCAAGAACTACTTAGATGTCATCA 58.659 40.000 15.20 0.00 37.03 3.07
2251 2310 5.987098 ACTTAGATGTCATCAAGCATGAGT 58.013 37.500 15.20 3.55 42.55 3.41
2270 2329 4.644234 TGAGTTGTTTGGAGAAATTCAGCA 59.356 37.500 0.00 0.00 0.00 4.41
2287 2346 2.036414 AGCTGCTCGAGGAGACCA 59.964 61.111 34.83 13.37 35.31 4.02
2501 2572 1.349357 GGAGGCAGAGGTGAAGAAAGT 59.651 52.381 0.00 0.00 0.00 2.66
2578 2650 3.933861 AGGAAGGTGACAAGTGAAGTT 57.066 42.857 0.00 0.00 0.00 2.66
2593 2665 7.227512 ACAAGTGAAGTTACATCAAGAAAGGAG 59.772 37.037 0.00 0.00 0.00 3.69
2599 2671 5.833131 AGTTACATCAAGAAAGGAGGCAAAA 59.167 36.000 0.00 0.00 0.00 2.44
2601 2673 4.473444 ACATCAAGAAAGGAGGCAAAAGA 58.527 39.130 0.00 0.00 0.00 2.52
2602 2674 4.895297 ACATCAAGAAAGGAGGCAAAAGAA 59.105 37.500 0.00 0.00 0.00 2.52
2721 2798 6.631971 TGTGTTGCATCTCTCATTTGTAAA 57.368 33.333 0.00 0.00 0.00 2.01
2737 3571 8.976353 TCATTTGTAAATTGTAATATGTGCCCT 58.024 29.630 0.00 0.00 0.00 5.19
2743 3577 7.582667 AAATTGTAATATGTGCCCTCTTACC 57.417 36.000 0.00 0.00 0.00 2.85
2833 3667 3.196254 ACCCATACACTTTACCTACACCG 59.804 47.826 0.00 0.00 0.00 4.94
2845 3679 3.332034 ACCTACACCGAAATGCTAACAC 58.668 45.455 0.00 0.00 0.00 3.32
2881 3715 7.685481 AGGGAATTAAACCTACCCAAATTTTG 58.315 34.615 0.00 1.99 42.62 2.44
2919 3753 1.873698 TTTAGACAAAACGAGCGGCT 58.126 45.000 0.00 0.00 0.00 5.52
3105 3949 6.346518 GCGTCGGAATTCAAATTTGTTTTCAT 60.347 34.615 24.05 9.39 0.00 2.57
3229 4096 6.493458 ACCTTTAGTATTGATGGTGCAACTTT 59.507 34.615 2.04 0.00 36.74 2.66
3230 4097 7.668052 ACCTTTAGTATTGATGGTGCAACTTTA 59.332 33.333 2.04 0.00 36.74 1.85
3231 4098 8.184192 CCTTTAGTATTGATGGTGCAACTTTAG 58.816 37.037 2.04 0.00 36.74 1.85
3232 4099 8.630054 TTTAGTATTGATGGTGCAACTTTAGT 57.370 30.769 2.04 0.00 36.74 2.24
3233 4100 6.743575 AGTATTGATGGTGCAACTTTAGTC 57.256 37.500 2.04 0.00 36.74 2.59
3234 4101 5.648092 AGTATTGATGGTGCAACTTTAGTCC 59.352 40.000 2.04 0.00 36.74 3.85
3235 4102 3.788227 TGATGGTGCAACTTTAGTCCT 57.212 42.857 2.04 0.00 36.74 3.85
3236 4103 3.411446 TGATGGTGCAACTTTAGTCCTG 58.589 45.455 2.04 0.00 36.74 3.86
3237 4104 3.181445 TGATGGTGCAACTTTAGTCCTGT 60.181 43.478 2.04 0.00 36.74 4.00
3238 4105 4.041075 TGATGGTGCAACTTTAGTCCTGTA 59.959 41.667 2.04 0.00 36.74 2.74
3239 4106 4.634012 TGGTGCAACTTTAGTCCTGTAT 57.366 40.909 2.04 0.00 36.74 2.29
3240 4107 4.323417 TGGTGCAACTTTAGTCCTGTATG 58.677 43.478 2.04 0.00 36.74 2.39
3241 4108 3.689649 GGTGCAACTTTAGTCCTGTATGG 59.310 47.826 0.00 0.00 36.74 2.74
3242 4109 4.324267 GTGCAACTTTAGTCCTGTATGGT 58.676 43.478 0.00 0.00 37.07 3.55
3243 4110 4.154195 GTGCAACTTTAGTCCTGTATGGTG 59.846 45.833 0.00 0.00 37.07 4.17
3244 4111 3.127030 GCAACTTTAGTCCTGTATGGTGC 59.873 47.826 0.00 0.00 37.07 5.01
3245 4112 4.323417 CAACTTTAGTCCTGTATGGTGCA 58.677 43.478 0.00 0.00 37.07 4.57
3246 4113 4.634012 ACTTTAGTCCTGTATGGTGCAA 57.366 40.909 0.00 0.00 37.07 4.08
3247 4114 4.980573 ACTTTAGTCCTGTATGGTGCAAA 58.019 39.130 0.00 0.00 37.07 3.68
3248 4115 5.570320 ACTTTAGTCCTGTATGGTGCAAAT 58.430 37.500 0.00 0.00 37.07 2.32
3287 4154 8.915057 ATTTTAGAGATGTATGATCCAACCAG 57.085 34.615 0.00 0.00 0.00 4.00
3318 4187 6.479001 AGGCTATAACATAGCAACTAACAACG 59.521 38.462 17.44 0.00 42.06 4.10
3321 4190 7.010738 GCTATAACATAGCAACTAACAACGGAA 59.989 37.037 12.23 0.00 40.14 4.30
3380 4249 7.395206 TCAACTACCTAGTAGTAGATGTGCAAA 59.605 37.037 7.78 0.00 46.96 3.68
3385 4254 4.473477 AGTAGTAGATGTGCAAACCTCC 57.527 45.455 0.00 0.00 0.00 4.30
3470 4341 4.454161 TGCGCAACTTAGTATGTTGTTCAT 59.546 37.500 22.78 0.00 44.54 2.57
3474 4345 5.323900 CAACTTAGTATGTTGTTCATGCCG 58.676 41.667 16.89 0.00 39.42 5.69
3484 4355 5.289595 TGTTGTTCATGCCGACTATCTATC 58.710 41.667 0.00 0.00 0.00 2.08
3514 4385 2.919602 TGCAACTCTTTTCCCTCCCTAT 59.080 45.455 0.00 0.00 0.00 2.57
3552 4425 2.128507 GTTGGCGGGGGAACAAACA 61.129 57.895 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.403558 GAGAGGTGCTGGGACCCC 61.404 72.222 8.45 2.69 36.56 4.95
20 21 4.504916 CGGCGAGTGGCAGAGAGG 62.505 72.222 0.00 0.00 46.16 3.69
46 47 0.820226 CAGAACAGAGGCCGAGATGA 59.180 55.000 0.00 0.00 0.00 2.92
48 49 0.534412 CACAGAACAGAGGCCGAGAT 59.466 55.000 0.00 0.00 0.00 2.75
59 60 1.228245 GGAGGCAAGGCACAGAACA 60.228 57.895 0.00 0.00 0.00 3.18
62 63 2.596851 GGAGGAGGCAAGGCACAGA 61.597 63.158 0.00 0.00 0.00 3.41
66 67 2.606587 GGAAGGAGGAGGCAAGGCA 61.607 63.158 0.00 0.00 0.00 4.75
87 88 1.082104 GCGGTTGACTTTTGCGAGG 60.082 57.895 0.00 0.00 0.00 4.63
89 90 1.503818 GGAGCGGTTGACTTTTGCGA 61.504 55.000 0.00 0.00 0.00 5.10
97 98 0.313672 TTTGCATTGGAGCGGTTGAC 59.686 50.000 0.00 0.00 37.31 3.18
100 101 1.617850 TGAATTTGCATTGGAGCGGTT 59.382 42.857 0.00 0.00 37.31 4.44
137 138 0.781787 CAGTTTCGTGATCGCAACGA 59.218 50.000 7.12 4.85 44.88 3.85
138 139 0.785708 GCAGTTTCGTGATCGCAACG 60.786 55.000 7.12 2.24 44.88 4.10
139 140 0.512952 AGCAGTTTCGTGATCGCAAC 59.487 50.000 7.12 4.31 41.80 4.17
140 141 0.790207 GAGCAGTTTCGTGATCGCAA 59.210 50.000 7.12 0.00 36.96 4.85
141 142 1.014044 GGAGCAGTTTCGTGATCGCA 61.014 55.000 7.12 0.00 33.46 5.10
142 143 1.014044 TGGAGCAGTTTCGTGATCGC 61.014 55.000 0.00 0.00 33.46 4.58
143 144 1.325640 CATGGAGCAGTTTCGTGATCG 59.674 52.381 0.00 0.00 33.46 3.69
144 145 1.063174 GCATGGAGCAGTTTCGTGATC 59.937 52.381 0.00 0.00 44.79 2.92
145 146 1.089920 GCATGGAGCAGTTTCGTGAT 58.910 50.000 0.00 0.00 44.79 3.06
146 147 2.543578 GCATGGAGCAGTTTCGTGA 58.456 52.632 0.00 0.00 44.79 4.35
156 157 1.869774 TGTATCATCGTGCATGGAGC 58.130 50.000 5.98 0.00 45.96 4.70
157 158 3.246936 CACTTGTATCATCGTGCATGGAG 59.753 47.826 5.98 0.00 32.64 3.86
158 159 3.197265 CACTTGTATCATCGTGCATGGA 58.803 45.455 5.98 0.00 32.64 3.41
159 160 2.938451 ACACTTGTATCATCGTGCATGG 59.062 45.455 5.98 0.00 32.64 3.66
160 161 5.463061 TCATACACTTGTATCATCGTGCATG 59.537 40.000 0.00 0.00 39.06 4.06
161 162 5.600696 TCATACACTTGTATCATCGTGCAT 58.399 37.500 0.00 0.00 39.06 3.96
162 163 5.004922 TCATACACTTGTATCATCGTGCA 57.995 39.130 0.00 0.00 39.06 4.57
163 164 6.530913 AATCATACACTTGTATCATCGTGC 57.469 37.500 0.00 0.00 39.06 5.34
165 166 9.208022 CCATAAATCATACACTTGTATCATCGT 57.792 33.333 0.00 0.00 39.06 3.73
166 167 9.423061 TCCATAAATCATACACTTGTATCATCG 57.577 33.333 0.00 0.00 39.06 3.84
169 170 9.898152 TTGTCCATAAATCATACACTTGTATCA 57.102 29.630 0.00 0.00 39.06 2.15
171 172 9.679661 TGTTGTCCATAAATCATACACTTGTAT 57.320 29.630 0.00 0.00 41.58 2.29
172 173 9.679661 ATGTTGTCCATAAATCATACACTTGTA 57.320 29.630 0.00 0.00 30.97 2.41
173 174 7.994425 TGTTGTCCATAAATCATACACTTGT 57.006 32.000 0.00 0.00 0.00 3.16
175 176 8.840321 GCTATGTTGTCCATAAATCATACACTT 58.160 33.333 0.00 0.00 35.62 3.16
176 177 7.171508 CGCTATGTTGTCCATAAATCATACACT 59.828 37.037 0.00 0.00 35.62 3.55
177 178 7.170828 TCGCTATGTTGTCCATAAATCATACAC 59.829 37.037 0.00 0.00 35.62 2.90
178 179 7.213678 TCGCTATGTTGTCCATAAATCATACA 58.786 34.615 0.00 0.00 35.62 2.29
179 180 7.652300 TCGCTATGTTGTCCATAAATCATAC 57.348 36.000 0.00 0.00 35.62 2.39
180 181 7.549134 GGATCGCTATGTTGTCCATAAATCATA 59.451 37.037 0.00 0.00 35.62 2.15
181 182 6.372659 GGATCGCTATGTTGTCCATAAATCAT 59.627 38.462 0.00 0.00 35.62 2.45
182 183 5.700832 GGATCGCTATGTTGTCCATAAATCA 59.299 40.000 0.00 0.00 35.62 2.57
183 184 5.700832 TGGATCGCTATGTTGTCCATAAATC 59.299 40.000 0.00 0.00 35.62 2.17
184 185 5.620206 TGGATCGCTATGTTGTCCATAAAT 58.380 37.500 0.00 0.00 35.62 1.40
185 186 5.029807 TGGATCGCTATGTTGTCCATAAA 57.970 39.130 0.00 0.00 35.62 1.40
186 187 4.631131 CTGGATCGCTATGTTGTCCATAA 58.369 43.478 0.00 0.00 38.23 1.90
187 188 3.554960 GCTGGATCGCTATGTTGTCCATA 60.555 47.826 0.00 0.00 38.23 2.74
188 189 2.808202 GCTGGATCGCTATGTTGTCCAT 60.808 50.000 0.00 0.00 38.23 3.41
189 190 1.473257 GCTGGATCGCTATGTTGTCCA 60.473 52.381 0.00 0.00 37.41 4.02
190 191 1.221414 GCTGGATCGCTATGTTGTCC 58.779 55.000 0.00 0.00 0.00 4.02
191 192 0.855349 CGCTGGATCGCTATGTTGTC 59.145 55.000 0.00 0.00 0.00 3.18
192 193 0.530650 CCGCTGGATCGCTATGTTGT 60.531 55.000 0.00 0.00 0.00 3.32
193 194 1.835483 GCCGCTGGATCGCTATGTTG 61.835 60.000 0.00 0.00 0.00 3.33
194 195 1.595382 GCCGCTGGATCGCTATGTT 60.595 57.895 0.00 0.00 0.00 2.71
195 196 2.029666 GCCGCTGGATCGCTATGT 59.970 61.111 0.00 0.00 0.00 2.29
196 197 2.740055 GGCCGCTGGATCGCTATG 60.740 66.667 0.00 0.00 0.00 2.23
197 198 4.363990 CGGCCGCTGGATCGCTAT 62.364 66.667 14.67 0.00 0.00 2.97
208 209 4.700365 GAACAAGTTGCCGGCCGC 62.700 66.667 26.77 16.93 38.31 6.53
209 210 2.141122 ATTGAACAAGTTGCCGGCCG 62.141 55.000 26.77 21.04 0.00 6.13
210 211 0.388520 GATTGAACAAGTTGCCGGCC 60.389 55.000 26.77 9.73 0.00 6.13
211 212 0.313672 TGATTGAACAAGTTGCCGGC 59.686 50.000 22.73 22.73 0.00 6.13
212 213 3.440173 AGTATGATTGAACAAGTTGCCGG 59.560 43.478 1.81 0.00 0.00 6.13
213 214 4.685169 AGTATGATTGAACAAGTTGCCG 57.315 40.909 1.81 0.00 0.00 5.69
214 215 7.538575 ACATTAGTATGATTGAACAAGTTGCC 58.461 34.615 1.81 0.00 35.65 4.52
215 216 7.698130 GGACATTAGTATGATTGAACAAGTTGC 59.302 37.037 1.81 0.00 35.65 4.17
216 217 8.729756 TGGACATTAGTATGATTGAACAAGTTG 58.270 33.333 0.00 0.00 35.65 3.16
217 218 8.862325 TGGACATTAGTATGATTGAACAAGTT 57.138 30.769 0.00 0.00 35.65 2.66
218 219 9.113838 GATGGACATTAGTATGATTGAACAAGT 57.886 33.333 0.00 0.00 35.65 3.16
219 220 8.562892 GGATGGACATTAGTATGATTGAACAAG 58.437 37.037 0.00 0.00 35.65 3.16
220 221 8.052141 TGGATGGACATTAGTATGATTGAACAA 58.948 33.333 0.00 0.00 35.65 2.83
221 222 7.572814 TGGATGGACATTAGTATGATTGAACA 58.427 34.615 0.00 0.00 35.65 3.18
222 223 7.933577 TCTGGATGGACATTAGTATGATTGAAC 59.066 37.037 0.00 0.00 35.65 3.18
223 224 8.033178 TCTGGATGGACATTAGTATGATTGAA 57.967 34.615 0.00 0.00 35.65 2.69
224 225 7.616528 TCTGGATGGACATTAGTATGATTGA 57.383 36.000 0.00 0.00 35.65 2.57
225 226 8.859236 AATCTGGATGGACATTAGTATGATTG 57.141 34.615 0.00 0.00 35.65 2.67
228 229 9.778741 GTTAAATCTGGATGGACATTAGTATGA 57.221 33.333 0.00 0.00 35.65 2.15
229 230 9.003658 GGTTAAATCTGGATGGACATTAGTATG 57.996 37.037 0.00 0.00 37.79 2.39
230 231 8.723365 TGGTTAAATCTGGATGGACATTAGTAT 58.277 33.333 0.00 0.00 0.00 2.12
231 232 8.096621 TGGTTAAATCTGGATGGACATTAGTA 57.903 34.615 0.00 0.00 0.00 1.82
232 233 6.969043 TGGTTAAATCTGGATGGACATTAGT 58.031 36.000 0.00 0.00 0.00 2.24
233 234 7.095060 CGATGGTTAAATCTGGATGGACATTAG 60.095 40.741 0.00 0.00 0.00 1.73
234 235 6.710295 CGATGGTTAAATCTGGATGGACATTA 59.290 38.462 0.00 0.00 0.00 1.90
235 236 5.532406 CGATGGTTAAATCTGGATGGACATT 59.468 40.000 0.00 0.00 0.00 2.71
236 237 5.065914 CGATGGTTAAATCTGGATGGACAT 58.934 41.667 0.00 0.00 0.00 3.06
237 238 4.080582 ACGATGGTTAAATCTGGATGGACA 60.081 41.667 0.00 0.00 0.00 4.02
238 239 4.451900 ACGATGGTTAAATCTGGATGGAC 58.548 43.478 0.00 0.00 0.00 4.02
239 240 4.408921 AGACGATGGTTAAATCTGGATGGA 59.591 41.667 0.00 0.00 0.00 3.41
240 241 4.512944 CAGACGATGGTTAAATCTGGATGG 59.487 45.833 0.00 0.00 34.43 3.51
241 242 5.007039 CACAGACGATGGTTAAATCTGGATG 59.993 44.000 4.71 0.00 40.92 3.51
242 243 5.118990 CACAGACGATGGTTAAATCTGGAT 58.881 41.667 4.71 0.00 40.92 3.41
243 244 4.503910 CACAGACGATGGTTAAATCTGGA 58.496 43.478 4.71 0.00 40.92 3.86
244 245 3.063997 GCACAGACGATGGTTAAATCTGG 59.936 47.826 4.71 0.00 40.92 3.86
245 246 3.684305 TGCACAGACGATGGTTAAATCTG 59.316 43.478 0.00 0.00 42.07 2.90
246 247 3.937814 TGCACAGACGATGGTTAAATCT 58.062 40.909 0.00 0.00 0.00 2.40
247 248 4.550831 CGATGCACAGACGATGGTTAAATC 60.551 45.833 0.00 0.00 0.00 2.17
248 249 3.309682 CGATGCACAGACGATGGTTAAAT 59.690 43.478 0.00 0.00 0.00 1.40
249 250 2.670905 CGATGCACAGACGATGGTTAAA 59.329 45.455 0.00 0.00 0.00 1.52
250 251 2.267426 CGATGCACAGACGATGGTTAA 58.733 47.619 0.00 0.00 0.00 2.01
251 252 1.203758 ACGATGCACAGACGATGGTTA 59.796 47.619 10.44 0.00 0.00 2.85
252 253 0.037326 ACGATGCACAGACGATGGTT 60.037 50.000 10.44 0.00 0.00 3.67
253 254 0.458543 GACGATGCACAGACGATGGT 60.459 55.000 10.44 0.00 0.00 3.55
254 255 1.148157 GGACGATGCACAGACGATGG 61.148 60.000 10.44 0.00 0.00 3.51
255 256 1.474648 CGGACGATGCACAGACGATG 61.475 60.000 10.44 0.00 0.00 3.84
256 257 1.226688 CGGACGATGCACAGACGAT 60.227 57.895 10.44 0.00 0.00 3.73
257 258 1.858372 TTCGGACGATGCACAGACGA 61.858 55.000 10.44 9.83 0.00 4.20
258 259 1.406219 CTTCGGACGATGCACAGACG 61.406 60.000 0.00 0.00 0.00 4.18
259 260 0.388649 ACTTCGGACGATGCACAGAC 60.389 55.000 7.41 0.00 0.00 3.51
260 261 0.317160 AACTTCGGACGATGCACAGA 59.683 50.000 7.41 0.00 0.00 3.41
261 262 1.136252 CAAACTTCGGACGATGCACAG 60.136 52.381 7.41 0.00 0.00 3.66
262 263 0.865111 CAAACTTCGGACGATGCACA 59.135 50.000 7.41 0.00 0.00 4.57
263 264 0.865769 ACAAACTTCGGACGATGCAC 59.134 50.000 7.41 0.00 0.00 4.57
264 265 1.144969 GACAAACTTCGGACGATGCA 58.855 50.000 7.41 0.00 0.00 3.96
265 266 0.093026 CGACAAACTTCGGACGATGC 59.907 55.000 7.41 0.00 35.26 3.91
266 267 1.124297 CACGACAAACTTCGGACGATG 59.876 52.381 6.12 6.12 43.58 3.84
267 268 1.269413 ACACGACAAACTTCGGACGAT 60.269 47.619 0.00 0.00 43.58 3.73
268 269 0.101040 ACACGACAAACTTCGGACGA 59.899 50.000 0.00 0.00 43.58 4.20
269 270 0.228742 CACACGACAAACTTCGGACG 59.771 55.000 0.00 0.00 43.58 4.79
270 271 0.042448 GCACACGACAAACTTCGGAC 60.042 55.000 0.00 0.00 43.58 4.79
271 272 0.460459 TGCACACGACAAACTTCGGA 60.460 50.000 0.00 0.00 43.58 4.55
272 273 0.586319 ATGCACACGACAAACTTCGG 59.414 50.000 0.00 0.00 43.58 4.30
273 274 2.721797 GCTATGCACACGACAAACTTCG 60.722 50.000 0.00 0.00 44.87 3.79
274 275 2.223144 TGCTATGCACACGACAAACTTC 59.777 45.455 0.00 0.00 31.71 3.01
275 276 2.217750 TGCTATGCACACGACAAACTT 58.782 42.857 0.00 0.00 31.71 2.66
276 277 1.877637 TGCTATGCACACGACAAACT 58.122 45.000 0.00 0.00 31.71 2.66
285 286 9.074801 TTGATCACAAAAGAAGTGCTATGCACA 62.075 37.037 22.14 0.77 45.82 4.57
286 287 6.788021 TTGATCACAAAAGAAGTGCTATGCAC 60.788 38.462 14.03 14.03 44.84 4.57
287 288 4.761227 TGATCACAAAAGAAGTGCTATGCA 59.239 37.500 0.00 0.00 36.93 3.96
288 289 5.300969 TGATCACAAAAGAAGTGCTATGC 57.699 39.130 0.00 0.00 36.93 3.14
289 290 9.661187 GATATTGATCACAAAAGAAGTGCTATG 57.339 33.333 0.00 0.00 39.54 2.23
290 291 9.399797 TGATATTGATCACAAAAGAAGTGCTAT 57.600 29.630 0.00 0.00 37.15 2.97
291 292 8.791327 TGATATTGATCACAAAAGAAGTGCTA 57.209 30.769 0.00 0.00 37.15 3.49
292 293 7.692460 TGATATTGATCACAAAAGAAGTGCT 57.308 32.000 0.00 0.00 37.15 4.40
293 294 8.746922 TTTGATATTGATCACAAAAGAAGTGC 57.253 30.769 6.72 0.00 41.92 4.40
303 304 9.936759 TGTGTAGTAGTTTTGATATTGATCACA 57.063 29.630 0.00 0.00 41.92 3.58
305 306 9.936759 TGTGTGTAGTAGTTTTGATATTGATCA 57.063 29.630 0.00 0.00 40.45 2.92
307 308 8.869897 CGTGTGTGTAGTAGTTTTGATATTGAT 58.130 33.333 0.00 0.00 0.00 2.57
308 309 8.083462 TCGTGTGTGTAGTAGTTTTGATATTGA 58.917 33.333 0.00 0.00 0.00 2.57
309 310 8.234887 TCGTGTGTGTAGTAGTTTTGATATTG 57.765 34.615 0.00 0.00 0.00 1.90
310 311 8.869897 CATCGTGTGTGTAGTAGTTTTGATATT 58.130 33.333 0.00 0.00 0.00 1.28
311 312 8.033038 ACATCGTGTGTGTAGTAGTTTTGATAT 58.967 33.333 0.00 0.00 40.28 1.63
312 313 7.372714 ACATCGTGTGTGTAGTAGTTTTGATA 58.627 34.615 0.00 0.00 40.28 2.15
313 314 6.220930 ACATCGTGTGTGTAGTAGTTTTGAT 58.779 36.000 0.00 0.00 40.28 2.57
314 315 5.593968 ACATCGTGTGTGTAGTAGTTTTGA 58.406 37.500 0.00 0.00 40.28 2.69
315 316 5.690409 AGACATCGTGTGTGTAGTAGTTTTG 59.310 40.000 1.13 0.00 42.36 2.44
316 317 5.839621 AGACATCGTGTGTGTAGTAGTTTT 58.160 37.500 1.13 0.00 42.36 2.43
317 318 5.449107 AGACATCGTGTGTGTAGTAGTTT 57.551 39.130 1.13 0.00 42.36 2.66
318 319 5.449107 AAGACATCGTGTGTGTAGTAGTT 57.551 39.130 1.13 0.00 42.36 2.24
319 320 5.449107 AAAGACATCGTGTGTGTAGTAGT 57.551 39.130 1.13 0.00 42.36 2.73
320 321 5.388475 GCAAAAGACATCGTGTGTGTAGTAG 60.388 44.000 1.13 0.00 42.36 2.57
321 322 4.446385 GCAAAAGACATCGTGTGTGTAGTA 59.554 41.667 1.13 0.00 42.36 1.82
322 323 3.247648 GCAAAAGACATCGTGTGTGTAGT 59.752 43.478 1.13 0.00 42.36 2.73
323 324 3.247411 TGCAAAAGACATCGTGTGTGTAG 59.753 43.478 1.13 0.00 42.36 2.74
324 325 3.001838 GTGCAAAAGACATCGTGTGTGTA 59.998 43.478 0.00 0.00 42.36 2.90
325 326 2.013400 TGCAAAAGACATCGTGTGTGT 58.987 42.857 1.13 0.00 42.36 3.72
326 327 2.375110 GTGCAAAAGACATCGTGTGTG 58.625 47.619 0.00 0.00 42.36 3.82
327 328 1.003972 CGTGCAAAAGACATCGTGTGT 60.004 47.619 0.00 0.00 45.83 3.72
328 329 1.260297 TCGTGCAAAAGACATCGTGTG 59.740 47.619 0.00 0.00 0.00 3.82
329 330 1.577468 TCGTGCAAAAGACATCGTGT 58.423 45.000 0.00 0.00 0.00 4.49
330 331 2.498905 CATCGTGCAAAAGACATCGTG 58.501 47.619 0.00 0.00 0.00 4.35
331 332 1.135972 GCATCGTGCAAAAGACATCGT 60.136 47.619 0.00 0.00 44.26 3.73
332 333 1.527696 GCATCGTGCAAAAGACATCG 58.472 50.000 0.00 0.00 44.26 3.84
343 344 1.056103 CTATCGTGCTAGCATCGTGC 58.944 55.000 27.12 13.72 45.46 5.34
344 345 2.407521 ACTATCGTGCTAGCATCGTG 57.592 50.000 27.12 21.86 0.00 4.35
345 346 4.563337 TTTACTATCGTGCTAGCATCGT 57.437 40.909 27.12 19.15 0.00 3.73
346 347 4.559251 GGATTTACTATCGTGCTAGCATCG 59.441 45.833 22.51 23.75 0.00 3.84
347 348 5.470368 TGGATTTACTATCGTGCTAGCATC 58.530 41.667 22.51 13.43 0.00 3.91
348 349 5.468540 TGGATTTACTATCGTGCTAGCAT 57.531 39.130 22.51 7.71 0.00 3.79
349 350 4.929819 TGGATTTACTATCGTGCTAGCA 57.070 40.909 14.93 14.93 0.00 3.49
350 351 4.148348 CGTTGGATTTACTATCGTGCTAGC 59.852 45.833 8.10 8.10 0.00 3.42
351 352 5.516996 TCGTTGGATTTACTATCGTGCTAG 58.483 41.667 0.00 0.00 0.00 3.42
352 353 5.503662 TCGTTGGATTTACTATCGTGCTA 57.496 39.130 0.00 0.00 0.00 3.49
353 354 4.380841 TCGTTGGATTTACTATCGTGCT 57.619 40.909 0.00 0.00 0.00 4.40
354 355 4.982916 AGATCGTTGGATTTACTATCGTGC 59.017 41.667 0.00 0.00 31.51 5.34
355 356 5.402568 CCAGATCGTTGGATTTACTATCGTG 59.597 44.000 0.00 0.00 40.87 4.35
356 357 5.509163 CCCAGATCGTTGGATTTACTATCGT 60.509 44.000 2.56 0.00 40.87 3.73
357 358 4.923871 CCCAGATCGTTGGATTTACTATCG 59.076 45.833 2.56 0.00 40.87 2.92
358 359 5.855045 ACCCAGATCGTTGGATTTACTATC 58.145 41.667 2.56 0.00 40.87 2.08
359 360 5.888982 ACCCAGATCGTTGGATTTACTAT 57.111 39.130 2.56 0.00 40.87 2.12
360 361 5.667466 GAACCCAGATCGTTGGATTTACTA 58.333 41.667 2.56 0.00 40.87 1.82
361 362 4.514401 GAACCCAGATCGTTGGATTTACT 58.486 43.478 2.56 0.00 40.87 2.24
362 363 3.308866 CGAACCCAGATCGTTGGATTTAC 59.691 47.826 2.56 0.00 40.87 2.01
363 364 3.527533 CGAACCCAGATCGTTGGATTTA 58.472 45.455 2.56 0.00 40.87 1.40
364 365 2.356135 CGAACCCAGATCGTTGGATTT 58.644 47.619 2.56 0.00 40.87 2.17
365 366 2.024176 CGAACCCAGATCGTTGGATT 57.976 50.000 2.56 0.00 40.87 3.01
366 367 3.760693 CGAACCCAGATCGTTGGAT 57.239 52.632 2.56 0.00 40.87 3.41
372 373 1.644786 GGGCAAACGAACCCAGATCG 61.645 60.000 0.00 0.00 46.22 3.69
373 374 2.180674 GGGCAAACGAACCCAGATC 58.819 57.895 0.00 0.00 46.22 2.75
374 375 4.415783 GGGCAAACGAACCCAGAT 57.584 55.556 0.00 0.00 46.22 2.90
379 380 0.458260 AACACTTGGGCAAACGAACC 59.542 50.000 0.00 0.00 0.00 3.62
380 381 1.135228 ACAACACTTGGGCAAACGAAC 60.135 47.619 0.00 0.00 34.12 3.95
381 382 1.178276 ACAACACTTGGGCAAACGAA 58.822 45.000 0.00 0.00 34.12 3.85
382 383 1.944024 CTACAACACTTGGGCAAACGA 59.056 47.619 0.00 0.00 34.12 3.85
383 384 1.001815 CCTACAACACTTGGGCAAACG 60.002 52.381 0.00 0.00 34.12 3.60
384 385 1.339929 CCCTACAACACTTGGGCAAAC 59.660 52.381 0.00 0.00 32.49 2.93
385 386 1.063567 ACCCTACAACACTTGGGCAAA 60.064 47.619 0.00 0.00 43.25 3.68
386 387 0.553819 ACCCTACAACACTTGGGCAA 59.446 50.000 0.00 0.00 43.25 4.52
387 388 0.109723 GACCCTACAACACTTGGGCA 59.890 55.000 0.00 0.00 43.25 5.36
388 389 0.953960 CGACCCTACAACACTTGGGC 60.954 60.000 0.00 0.00 43.25 5.36
389 390 0.321298 CCGACCCTACAACACTTGGG 60.321 60.000 0.00 0.00 44.89 4.12
390 391 0.682852 TCCGACCCTACAACACTTGG 59.317 55.000 0.00 0.00 34.12 3.61
391 392 2.028476 TGATCCGACCCTACAACACTTG 60.028 50.000 0.00 0.00 0.00 3.16
392 393 2.028385 GTGATCCGACCCTACAACACTT 60.028 50.000 0.00 0.00 0.00 3.16
393 394 1.549170 GTGATCCGACCCTACAACACT 59.451 52.381 0.00 0.00 0.00 3.55
394 395 1.274167 TGTGATCCGACCCTACAACAC 59.726 52.381 0.00 0.00 0.00 3.32
395 396 1.548719 CTGTGATCCGACCCTACAACA 59.451 52.381 0.00 0.00 0.00 3.33
396 397 1.739371 GCTGTGATCCGACCCTACAAC 60.739 57.143 0.00 0.00 0.00 3.32
397 398 0.535335 GCTGTGATCCGACCCTACAA 59.465 55.000 0.00 0.00 0.00 2.41
398 399 1.327690 GGCTGTGATCCGACCCTACA 61.328 60.000 0.00 0.00 0.00 2.74
399 400 1.327690 TGGCTGTGATCCGACCCTAC 61.328 60.000 0.00 0.00 0.00 3.18
400 401 0.398522 ATGGCTGTGATCCGACCCTA 60.399 55.000 0.00 0.00 0.00 3.53
401 402 1.690219 GATGGCTGTGATCCGACCCT 61.690 60.000 0.00 0.00 0.00 4.34
402 403 1.227674 GATGGCTGTGATCCGACCC 60.228 63.158 0.00 0.00 0.00 4.46
403 404 0.107456 ATGATGGCTGTGATCCGACC 59.893 55.000 0.00 0.00 0.00 4.79
404 405 1.506493 GATGATGGCTGTGATCCGAC 58.494 55.000 0.00 0.00 0.00 4.79
405 406 0.394192 GGATGATGGCTGTGATCCGA 59.606 55.000 0.00 0.00 0.00 4.55
406 407 0.107268 TGGATGATGGCTGTGATCCG 59.893 55.000 0.00 0.00 37.75 4.18
407 408 1.134007 TGTGGATGATGGCTGTGATCC 60.134 52.381 0.00 0.00 35.80 3.36
408 409 2.336945 TGTGGATGATGGCTGTGATC 57.663 50.000 0.00 0.00 0.00 2.92
409 410 2.812836 TTGTGGATGATGGCTGTGAT 57.187 45.000 0.00 0.00 0.00 3.06
410 411 2.583024 TTTGTGGATGATGGCTGTGA 57.417 45.000 0.00 0.00 0.00 3.58
411 412 2.223409 CGATTTGTGGATGATGGCTGTG 60.223 50.000 0.00 0.00 0.00 3.66
412 413 2.019249 CGATTTGTGGATGATGGCTGT 58.981 47.619 0.00 0.00 0.00 4.40
413 414 2.019249 ACGATTTGTGGATGATGGCTG 58.981 47.619 0.00 0.00 0.00 4.85
414 415 2.019249 CACGATTTGTGGATGATGGCT 58.981 47.619 0.00 0.00 45.21 4.75
415 416 2.480224 CACGATTTGTGGATGATGGC 57.520 50.000 0.00 0.00 45.21 4.40
437 438 8.486749 AGCAGTGCTATATGGACGATAGTTCG 62.487 46.154 18.11 0.00 45.00 3.95
438 439 5.336055 AGCAGTGCTATATGGACGATAGTTC 60.336 44.000 18.11 0.00 45.00 3.01
439 440 4.524714 AGCAGTGCTATATGGACGATAGTT 59.475 41.667 18.11 0.00 45.00 2.24
441 442 4.156739 TGAGCAGTGCTATATGGACGATAG 59.843 45.833 19.77 0.00 39.88 2.08
442 443 4.079253 TGAGCAGTGCTATATGGACGATA 58.921 43.478 19.77 0.00 39.88 2.92
443 444 2.893489 TGAGCAGTGCTATATGGACGAT 59.107 45.455 19.77 0.00 39.88 3.73
444 445 2.306847 TGAGCAGTGCTATATGGACGA 58.693 47.619 19.77 0.00 39.88 4.20
445 446 2.800881 TGAGCAGTGCTATATGGACG 57.199 50.000 19.77 0.00 39.88 4.79
446 447 7.678947 ATTTATTGAGCAGTGCTATATGGAC 57.321 36.000 19.77 4.01 39.88 4.02
447 448 8.597167 ACTATTTATTGAGCAGTGCTATATGGA 58.403 33.333 19.77 3.83 39.88 3.41
448 449 8.783833 ACTATTTATTGAGCAGTGCTATATGG 57.216 34.615 19.77 7.65 39.88 2.74
452 453 9.212641 CATGTACTATTTATTGAGCAGTGCTAT 57.787 33.333 19.77 11.75 39.88 2.97
453 454 7.657354 CCATGTACTATTTATTGAGCAGTGCTA 59.343 37.037 19.77 3.27 39.88 3.49
454 455 6.484643 CCATGTACTATTTATTGAGCAGTGCT 59.515 38.462 19.86 19.86 43.88 4.40
455 456 6.662616 CCATGTACTATTTATTGAGCAGTGC 58.337 40.000 7.13 7.13 0.00 4.40
456 457 6.564686 CGCCATGTACTATTTATTGAGCAGTG 60.565 42.308 0.00 0.00 0.00 3.66
457 458 5.466728 CGCCATGTACTATTTATTGAGCAGT 59.533 40.000 0.00 0.00 0.00 4.40
458 459 5.466728 ACGCCATGTACTATTTATTGAGCAG 59.533 40.000 0.00 0.00 0.00 4.24
459 460 5.364778 ACGCCATGTACTATTTATTGAGCA 58.635 37.500 0.00 0.00 0.00 4.26
460 461 5.465390 TGACGCCATGTACTATTTATTGAGC 59.535 40.000 0.00 0.00 0.00 4.26
461 462 7.513132 CATGACGCCATGTACTATTTATTGAG 58.487 38.462 3.20 0.00 43.90 3.02
462 463 7.420184 CATGACGCCATGTACTATTTATTGA 57.580 36.000 3.20 0.00 43.90 2.57
601 612 3.579534 AGCTCATGGATTGCATCTCTT 57.420 42.857 0.00 0.00 0.00 2.85
844 871 3.773974 GCTGAGCAGCGTGTAGTC 58.226 61.111 6.73 0.00 45.29 2.59
878 913 1.948834 CTGCCAATGATTCATGCGGTA 59.051 47.619 13.95 10.13 0.00 4.02
885 920 9.112725 GCACATATATATACTGCCAATGATTCA 57.887 33.333 11.06 0.00 0.00 2.57
898 933 5.065602 TCGACCAGGACGCACATATATATAC 59.934 44.000 6.43 0.00 0.00 1.47
899 934 5.065602 GTCGACCAGGACGCACATATATATA 59.934 44.000 3.51 0.00 0.00 0.86
900 935 4.014406 TCGACCAGGACGCACATATATAT 58.986 43.478 6.43 0.00 0.00 0.86
908 943 2.338015 TAGGTCGACCAGGACGCAC 61.338 63.158 35.00 5.95 37.82 5.34
916 951 0.606604 GGAAAGCTGTAGGTCGACCA 59.393 55.000 35.00 18.83 38.89 4.02
923 958 2.019984 GCCTTGATGGAAAGCTGTAGG 58.980 52.381 0.00 0.00 38.35 3.18
942 977 2.954611 GTCTTTGGGCGGTCTTGC 59.045 61.111 0.00 0.00 0.00 4.01
954 989 2.105006 AGATGATGCTGTGCGTCTTT 57.895 45.000 12.16 1.50 44.07 2.52
956 991 1.649664 GAAGATGATGCTGTGCGTCT 58.350 50.000 12.16 0.00 44.07 4.18
957 992 0.654683 GGAAGATGATGCTGTGCGTC 59.345 55.000 4.95 4.95 44.02 5.19
958 993 0.251354 AGGAAGATGATGCTGTGCGT 59.749 50.000 0.00 0.00 0.00 5.24
959 994 0.935898 GAGGAAGATGATGCTGTGCG 59.064 55.000 0.00 0.00 0.00 5.34
960 995 1.941294 CAGAGGAAGATGATGCTGTGC 59.059 52.381 0.00 0.00 0.00 4.57
961 996 3.196463 GACAGAGGAAGATGATGCTGTG 58.804 50.000 0.00 0.00 37.91 3.66
965 1000 2.485124 CCTGGACAGAGGAAGATGATGC 60.485 54.545 0.00 0.00 34.69 3.91
968 1003 2.461695 GACCTGGACAGAGGAAGATGA 58.538 52.381 0.00 0.00 36.51 2.92
972 1007 0.901124 CTGGACCTGGACAGAGGAAG 59.099 60.000 14.90 0.00 36.86 3.46
973 1008 0.545309 CCTGGACCTGGACAGAGGAA 60.545 60.000 19.57 0.00 36.86 3.36
974 1009 1.079256 CCTGGACCTGGACAGAGGA 59.921 63.158 19.57 0.00 36.86 3.71
975 1010 2.664081 GCCTGGACCTGGACAGAGG 61.664 68.421 21.06 14.13 36.86 3.69
976 1011 2.664081 GGCCTGGACCTGGACAGAG 61.664 68.421 21.06 12.75 36.86 3.35
977 1012 2.607750 GGCCTGGACCTGGACAGA 60.608 66.667 21.06 0.00 36.86 3.41
978 1013 3.721706 GGGCCTGGACCTGGACAG 61.722 72.222 23.80 8.41 31.66 3.51
979 1014 4.590553 TGGGCCTGGACCTGGACA 62.591 66.667 23.80 16.32 31.66 4.02
980 1015 3.721706 CTGGGCCTGGACCTGGAC 61.722 72.222 21.75 18.14 0.00 4.02
1004 1043 1.689243 CCTCTCCACCATCATCGCCA 61.689 60.000 0.00 0.00 0.00 5.69
1069 1108 0.672401 ACGTATTTCTGCACCACGGG 60.672 55.000 0.00 0.00 36.95 5.28
1275 1314 1.040646 TCTTGCTGTCCTTGACGAGT 58.959 50.000 0.00 0.00 34.95 4.18
1329 1368 0.325933 TCCCGGAGAAGTCGTCAGTA 59.674 55.000 0.73 0.00 0.00 2.74
1402 1441 2.521224 GTCCTCGCCGGGGTAGAT 60.521 66.667 19.13 0.00 0.00 1.98
1561 1600 1.765074 GGTAGGGGTTCCAGTTGCA 59.235 57.895 0.00 0.00 34.83 4.08
1923 1982 4.566987 GACGTTTTCCAGTGAGGTCTATT 58.433 43.478 0.00 0.00 39.02 1.73
1926 1985 1.269621 CGACGTTTTCCAGTGAGGTCT 60.270 52.381 0.00 0.00 39.02 3.85
1935 1994 0.462225 TGTCCTTGCGACGTTTTCCA 60.462 50.000 0.00 0.00 45.23 3.53
1944 2003 1.302511 GGCCTTCTTGTCCTTGCGA 60.303 57.895 0.00 0.00 0.00 5.10
1971 2030 4.270008 TGTCATCATCGTCAGAGTCCTTA 58.730 43.478 0.00 0.00 0.00 2.69
2034 2093 2.707849 GCCCGAGAGCGTCACCTTA 61.708 63.158 0.00 0.00 35.23 2.69
2118 2177 2.244695 TCGAGCTTCTCCTTGTGGTTA 58.755 47.619 0.00 0.00 34.23 2.85
2196 2255 0.253327 GGACCTTGAAGCCCTCGAAT 59.747 55.000 0.00 0.00 0.00 3.34
2214 2273 4.142138 ACATCTAAGTAGTTCTTGGCGAGG 60.142 45.833 0.97 0.00 37.56 4.63
2242 2301 5.796424 ATTTCTCCAAACAACTCATGCTT 57.204 34.783 0.00 0.00 0.00 3.91
2251 2310 3.638160 AGCTGCTGAATTTCTCCAAACAA 59.362 39.130 0.00 0.00 0.00 2.83
2270 2329 2.036414 TGGTCTCCTCGAGCAGCT 59.964 61.111 6.99 0.00 44.63 4.24
2418 2480 2.469465 CTTCCTCCTTCGCCTTGGCA 62.469 60.000 12.45 0.00 0.00 4.92
2501 2572 4.588528 CCTTCCCTTTGTTTTCCTCATTGA 59.411 41.667 0.00 0.00 0.00 2.57
2578 2650 5.630121 TCTTTTGCCTCCTTTCTTGATGTA 58.370 37.500 0.00 0.00 0.00 2.29
2612 2684 2.622436 GGGCACTAGTGAACAAGCTAG 58.378 52.381 27.08 0.00 40.21 3.42
2691 2768 9.229784 CAAATGAGAGATGCAACACATAAATAC 57.770 33.333 0.00 0.00 39.84 1.89
2694 2771 7.218228 ACAAATGAGAGATGCAACACATAAA 57.782 32.000 0.00 0.00 39.84 1.40
2721 2798 6.515512 AGGTAAGAGGGCACATATTACAAT 57.484 37.500 9.34 0.00 0.00 2.71
2802 3636 6.271624 AGGTAAAGTGTATGGGTCTTGTTAGT 59.728 38.462 0.00 0.00 0.00 2.24
2817 3651 3.749609 GCATTTCGGTGTAGGTAAAGTGT 59.250 43.478 0.00 0.00 0.00 3.55
2819 3653 4.281898 AGCATTTCGGTGTAGGTAAAGT 57.718 40.909 0.00 0.00 0.00 2.66
2833 3667 7.908601 CCCTATAGAAAAACGTGTTAGCATTTC 59.091 37.037 0.00 1.30 0.00 2.17
2919 3753 2.356695 GCATGCATGTGCTATGAGTCAA 59.643 45.455 26.79 0.00 41.82 3.18
3020 3863 8.522830 AGAATCCAAAATGAATGTACGTGAATT 58.477 29.630 0.00 0.00 0.00 2.17
3105 3949 1.153901 GTCGCGAGGATTCCGACAA 60.154 57.895 10.24 0.00 41.98 3.18
3183 4027 3.107402 TGCACAATATAGCCCCCAAAA 57.893 42.857 0.00 0.00 0.00 2.44
3229 4096 6.909550 AAAAATTTGCACCATACAGGACTA 57.090 33.333 0.00 0.00 41.22 2.59
3230 4097 5.806654 AAAAATTTGCACCATACAGGACT 57.193 34.783 0.00 0.00 41.22 3.85
3271 4138 5.455755 CCTCATCACTGGTTGGATCATACAT 60.456 44.000 0.00 0.00 0.00 2.29
3287 4154 6.226787 AGTTGCTATGTTATAGCCTCATCAC 58.773 40.000 15.87 5.71 39.69 3.06
3318 4187 5.772521 ACTAGTTGCACATCACAAAATTCC 58.227 37.500 0.00 0.00 0.00 3.01
3321 4190 6.936900 AGTAGACTAGTTGCACATCACAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
3380 4249 3.145043 TCCATAAGTAGGTAGGGGAGGT 58.855 50.000 0.00 0.00 0.00 3.85
3385 4254 3.521727 AGGCATCCATAAGTAGGTAGGG 58.478 50.000 0.00 0.00 0.00 3.53
3474 4345 5.363979 TGCACATCGACTGATAGATAGTC 57.636 43.478 0.00 0.00 40.83 2.59
3484 4355 3.364366 GGAAAAGAGTTGCACATCGACTG 60.364 47.826 0.00 0.00 39.52 3.51
3514 4385 5.295950 CAACCAAAACTGCATATCCACAAA 58.704 37.500 0.00 0.00 0.00 2.83
3552 4425 5.590530 CCTAGAAGACTATGTGCAACTCT 57.409 43.478 0.00 0.00 38.04 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.