Multiple sequence alignment - TraesCS5A01G003400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G003400 chr5A 100.000 4308 0 0 1 4308 2420362 2424669 0.000000e+00 7956.0
1 TraesCS5A01G003400 chr5A 82.739 533 60 19 3788 4306 87416118 87416632 3.060000e-121 446.0
2 TraesCS5A01G003400 chr5A 78.866 388 78 3 3923 4306 2432222 2432609 4.270000e-65 259.0
3 TraesCS5A01G003400 chr5D 93.245 1436 93 3 2111 3544 3638837 3637404 0.000000e+00 2111.0
4 TraesCS5A01G003400 chr5D 89.721 1362 76 26 764 2107 3640213 3638898 0.000000e+00 1681.0
5 TraesCS5A01G003400 chr5D 87.523 545 43 9 3763 4306 3653870 3654390 1.320000e-169 606.0
6 TraesCS5A01G003400 chr5D 83.865 533 61 15 3788 4306 93861293 93861814 6.480000e-133 484.0
7 TraesCS5A01G003400 chr5D 79.208 101 18 3 3630 3728 20049521 20049422 2.780000e-07 67.6
8 TraesCS5A01G003400 chr5D 100.000 30 0 0 607 636 3640245 3640216 6.020000e-04 56.5
9 TraesCS5A01G003400 chr5B 92.124 1384 104 5 2111 3491 5064052 5065433 0.000000e+00 1947.0
10 TraesCS5A01G003400 chr5B 87.433 931 56 35 789 1697 5062717 5063608 0.000000e+00 1014.0
11 TraesCS5A01G003400 chr5B 86.971 591 47 13 3729 4306 5065516 5066089 4.700000e-179 638.0
12 TraesCS5A01G003400 chr5B 84.021 582 49 18 1 565 335417456 335416902 1.780000e-143 520.0
13 TraesCS5A01G003400 chr5B 82.746 539 62 19 3789 4308 98844600 98845126 6.570000e-123 451.0
14 TraesCS5A01G003400 chr5B 93.023 129 9 0 636 764 411518801 411518929 5.690000e-44 189.0
15 TraesCS5A01G003400 chr5B 85.000 160 15 3 1946 2103 5063828 5063980 2.070000e-33 154.0
16 TraesCS5A01G003400 chr5B 83.750 160 9 9 1766 1921 5063683 5063829 7.510000e-28 135.0
17 TraesCS5A01G003400 chr1D 88.656 573 47 9 7 565 37907985 37907417 0.000000e+00 682.0
18 TraesCS5A01G003400 chr1D 78.862 123 24 2 1075 1196 77650373 77650494 9.930000e-12 82.4
19 TraesCS5A01G003400 chr1D 80.000 95 17 2 3635 3728 383819002 383818909 7.730000e-08 69.4
20 TraesCS5A01G003400 chr7B 87.302 441 43 6 1016 1449 694760638 694760204 3.870000e-135 492.0
21 TraesCS5A01G003400 chr7B 84.647 482 53 12 954 1425 698722168 698721698 1.090000e-125 460.0
22 TraesCS5A01G003400 chr7B 89.157 332 36 0 2134 2465 694759399 694759068 8.620000e-112 414.0
23 TraesCS5A01G003400 chr7B 84.975 406 50 7 2562 2965 693710662 693710266 6.710000e-108 401.0
24 TraesCS5A01G003400 chr7B 88.294 299 30 4 2670 2965 694758938 694758642 1.910000e-93 353.0
25 TraesCS5A01G003400 chr7B 82.920 363 50 9 3945 4306 693665685 693665334 2.500000e-82 316.0
26 TraesCS5A01G003400 chr7B 82.817 355 50 8 3949 4302 698684304 698683960 1.500000e-79 307.0
27 TraesCS5A01G003400 chr7B 91.244 217 19 0 2219 2435 693732454 693732238 3.260000e-76 296.0
28 TraesCS5A01G003400 chr7B 81.915 376 42 10 1016 1391 696571295 696570946 1.170000e-75 294.0
29 TraesCS5A01G003400 chr7B 80.827 266 30 9 1188 1449 693733312 693733064 5.690000e-44 189.0
30 TraesCS5A01G003400 chr7B 85.475 179 23 2 3123 3301 696344795 696344620 2.650000e-42 183.0
31 TraesCS5A01G003400 chr7B 82.222 180 32 0 4127 4306 694748595 694748416 5.770000e-34 156.0
32 TraesCS5A01G003400 chr7B 83.544 158 20 2 1946 2103 694759674 694759523 4.490000e-30 143.0
33 TraesCS5A01G003400 chr7B 91.176 68 6 0 3661 3728 138742356 138742423 4.590000e-15 93.5
34 TraesCS5A01G003400 chr4A 88.654 379 35 6 2134 2504 735207184 735207562 5.080000e-124 455.0
35 TraesCS5A01G003400 chr4A 86.978 407 44 7 2562 2965 735207552 735207952 2.360000e-122 449.0
36 TraesCS5A01G003400 chr4A 81.633 441 53 7 1016 1449 661979178 661979597 1.480000e-89 340.0
37 TraesCS5A01G003400 chr4A 87.037 270 32 1 2238 2504 661980978 661981247 7.000000e-78 302.0
38 TraesCS5A01G003400 chr4A 88.444 225 25 1 2738 2962 661981371 661981594 1.970000e-68 270.0
39 TraesCS5A01G003400 chr7A 89.101 367 35 5 2141 2504 700605829 700605465 6.570000e-123 451.0
40 TraesCS5A01G003400 chr7A 83.249 394 48 9 1064 1445 700607075 700606688 3.190000e-91 346.0
41 TraesCS5A01G003400 chr7A 89.011 182 19 1 3123 3304 700389638 700389458 1.560000e-54 224.0
42 TraesCS5A01G003400 chr7A 91.111 135 11 1 635 769 31552604 31552471 9.520000e-42 182.0
43 TraesCS5A01G003400 chr7A 81.373 204 26 7 1256 1457 700396084 700395891 5.770000e-34 156.0
44 TraesCS5A01G003400 chr7D 86.466 399 45 7 2569 2965 514989080 514988689 3.080000e-116 429.0
45 TraesCS5A01G003400 chr7D 86.685 368 44 3 2141 2504 514989444 514989078 1.870000e-108 403.0
46 TraesCS5A01G003400 chr7D 86.096 374 42 3 2140 2504 610716041 610715669 1.120000e-105 394.0
47 TraesCS5A01G003400 chr7D 83.765 425 40 13 1016 1434 608286659 608286258 4.070000e-100 375.0
48 TraesCS5A01G003400 chr7D 83.014 418 61 7 3887 4303 610419945 610420353 1.890000e-98 370.0
49 TraesCS5A01G003400 chr7D 89.385 179 19 0 3123 3301 610715267 610715089 4.330000e-55 226.0
50 TraesCS5A01G003400 chr7D 88.827 179 19 1 3124 3301 608284922 608284744 7.250000e-53 219.0
51 TraesCS5A01G003400 chr7D 80.505 277 34 12 3125 3390 514988671 514988404 1.220000e-45 195.0
52 TraesCS5A01G003400 chr7D 91.096 146 8 4 1306 1449 514990489 514990347 4.400000e-45 193.0
53 TraesCS5A01G003400 chr7D 90.141 142 10 4 627 766 54967049 54967188 9.520000e-42 182.0
54 TraesCS5A01G003400 chr7D 86.290 124 15 1 1946 2069 608285686 608285565 2.700000e-27 134.0
55 TraesCS5A01G003400 chr7D 82.635 167 14 7 1946 2103 610716331 610716171 2.700000e-27 134.0
56 TraesCS5A01G003400 chr7D 79.861 144 22 4 1114 1256 514990614 514990477 9.860000e-17 99.0
57 TraesCS5A01G003400 chr7D 91.176 68 6 0 3661 3728 174147858 174147925 4.590000e-15 93.5
58 TraesCS5A01G003400 chrUn 86.000 250 28 6 2713 2962 77530419 77530177 1.190000e-65 261.0
59 TraesCS5A01G003400 chrUn 89.385 179 18 1 3123 3301 83462164 83462341 1.560000e-54 224.0
60 TraesCS5A01G003400 chrUn 82.890 263 26 11 1188 1449 77532012 77531768 7.250000e-53 219.0
61 TraesCS5A01G003400 chrUn 86.164 159 13 3 1299 1449 83455721 83455878 3.450000e-36 163.0
62 TraesCS5A01G003400 chrUn 92.793 111 6 2 2856 2965 83462039 83462148 4.460000e-35 159.0
63 TraesCS5A01G003400 chr2A 93.077 130 9 0 633 762 583267040 583266911 1.580000e-44 191.0
64 TraesCS5A01G003400 chr3D 91.852 135 11 0 630 764 532240001 532240135 5.690000e-44 189.0
65 TraesCS5A01G003400 chr3B 90.210 143 12 2 625 766 436445196 436445337 7.360000e-43 185.0
66 TraesCS5A01G003400 chr3B 91.241 137 10 2 636 772 798057518 798057384 7.360000e-43 185.0
67 TraesCS5A01G003400 chr3B 93.258 89 6 0 3514 3602 827494379 827494467 9.720000e-27 132.0
68 TraesCS5A01G003400 chr3B 93.258 89 6 0 3514 3602 830634383 830634295 9.720000e-27 132.0
69 TraesCS5A01G003400 chr3B 86.207 87 10 2 3650 3735 644507536 644507451 4.590000e-15 93.5
70 TraesCS5A01G003400 chr2B 90.714 140 11 2 632 769 15164859 15164998 7.360000e-43 185.0
71 TraesCS5A01G003400 chr2B 95.294 85 4 0 3514 3598 239852611 239852695 7.510000e-28 135.0
72 TraesCS5A01G003400 chr2B 91.579 95 6 2 3510 3602 198755059 198755153 3.500000e-26 130.0
73 TraesCS5A01G003400 chr2B 89.773 88 9 0 3514 3601 35046368 35046281 3.520000e-21 113.0
74 TraesCS5A01G003400 chr2B 92.105 76 6 0 3653 3728 674302638 674302563 1.640000e-19 108.0
75 TraesCS5A01G003400 chr2B 90.789 76 7 0 3653 3728 674302563 674302638 7.620000e-18 102.0
76 TraesCS5A01G003400 chr3A 91.111 135 11 1 635 769 481867659 481867526 9.520000e-42 182.0
77 TraesCS5A01G003400 chr3A 94.382 89 4 1 3514 3602 45603269 45603356 7.510000e-28 135.0
78 TraesCS5A01G003400 chr6B 93.407 91 6 0 3510 3600 585532614 585532704 7.510000e-28 135.0
79 TraesCS5A01G003400 chr6B 93.258 89 6 0 3514 3602 715389936 715389848 9.720000e-27 132.0
80 TraesCS5A01G003400 chr6B 88.235 85 10 0 3653 3737 503544654 503544570 7.620000e-18 102.0
81 TraesCS5A01G003400 chr6B 89.474 76 8 0 3653 3728 503544579 503544654 3.550000e-16 97.1
82 TraesCS5A01G003400 chr6D 92.222 90 7 0 3514 3603 3377964 3378053 1.260000e-25 128.0
83 TraesCS5A01G003400 chr2D 91.398 93 8 0 3511 3603 432744389 432744297 1.260000e-25 128.0
84 TraesCS5A01G003400 chr4D 87.805 82 10 0 3653 3734 450203786 450203705 3.550000e-16 97.1
85 TraesCS5A01G003400 chr4D 89.474 76 8 0 3653 3728 450203711 450203786 3.550000e-16 97.1
86 TraesCS5A01G003400 chr1A 79.675 123 23 2 1075 1196 108798317 108798438 2.130000e-13 87.9
87 TraesCS5A01G003400 chr4B 80.374 107 17 4 3634 3738 487655526 487655630 1.280000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G003400 chr5A 2420362 2424669 4307 False 7956.000000 7956 100.000000 1 4308 1 chr5A.!!$F1 4307
1 TraesCS5A01G003400 chr5A 87416118 87416632 514 False 446.000000 446 82.739000 3788 4306 1 chr5A.!!$F3 518
2 TraesCS5A01G003400 chr5D 3637404 3640245 2841 True 1282.833333 2111 94.322000 607 3544 3 chr5D.!!$R2 2937
3 TraesCS5A01G003400 chr5D 3653870 3654390 520 False 606.000000 606 87.523000 3763 4306 1 chr5D.!!$F1 543
4 TraesCS5A01G003400 chr5D 93861293 93861814 521 False 484.000000 484 83.865000 3788 4306 1 chr5D.!!$F2 518
5 TraesCS5A01G003400 chr5B 5062717 5066089 3372 False 777.600000 1947 87.055600 789 4306 5 chr5B.!!$F3 3517
6 TraesCS5A01G003400 chr5B 335416902 335417456 554 True 520.000000 520 84.021000 1 565 1 chr5B.!!$R1 564
7 TraesCS5A01G003400 chr5B 98844600 98845126 526 False 451.000000 451 82.746000 3789 4308 1 chr5B.!!$F1 519
8 TraesCS5A01G003400 chr1D 37907417 37907985 568 True 682.000000 682 88.656000 7 565 1 chr1D.!!$R1 558
9 TraesCS5A01G003400 chr7B 694758642 694760638 1996 True 350.500000 492 87.074250 1016 2965 4 chr7B.!!$R9 1949
10 TraesCS5A01G003400 chr7B 693732238 693733312 1074 True 242.500000 296 86.035500 1188 2435 2 chr7B.!!$R8 1247
11 TraesCS5A01G003400 chr4A 735207184 735207952 768 False 452.000000 455 87.816000 2134 2965 2 chr4A.!!$F2 831
12 TraesCS5A01G003400 chr4A 661979178 661981594 2416 False 304.000000 340 85.704667 1016 2962 3 chr4A.!!$F1 1946
13 TraesCS5A01G003400 chr7A 700605465 700607075 1610 True 398.500000 451 86.175000 1064 2504 2 chr7A.!!$R4 1440
14 TraesCS5A01G003400 chr7D 514988404 514990614 2210 True 263.800000 429 84.922600 1114 3390 5 chr7D.!!$R1 2276
15 TraesCS5A01G003400 chr7D 610715089 610716331 1242 True 251.333333 394 86.038667 1946 3301 3 chr7D.!!$R3 1355
16 TraesCS5A01G003400 chr7D 608284744 608286659 1915 True 242.666667 375 86.294000 1016 3301 3 chr7D.!!$R2 2285
17 TraesCS5A01G003400 chrUn 77530177 77532012 1835 True 240.000000 261 84.445000 1188 2962 2 chrUn.!!$R1 1774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.252197 ACGCCACAACTATCCTTCCC 59.748 55.000 0.00 0.0 0.00 3.97 F
1582 1906 0.108424 GCTCTGTCTGCTCCAATCGT 60.108 55.000 0.00 0.0 0.00 3.73 F
1672 2008 0.606401 GCATACCACAGTGGCACAGT 60.606 55.000 20.48 15.8 46.79 3.55 F
2479 3904 1.066071 GTTGTAAGGGCTCAGAGGTCC 60.066 57.143 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1918 2.575279 ACAGATCCTTTCACATGCCTCT 59.425 45.455 0.0 0.0 0.00 3.69 R
2975 4423 0.317160 CACTGAGACCCGTAGCACAA 59.683 55.000 0.0 0.0 0.00 3.33 R
3202 4651 0.387367 CAGACCCGAAGACACAGACG 60.387 60.000 0.0 0.0 0.00 4.18 R
4270 5769 1.408683 GGCAGGATGGACAAGCACATA 60.409 52.381 0.0 0.0 35.86 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.252197 ACGCCACAACTATCCTTCCC 59.748 55.000 0.00 0.00 0.00 3.97
26 27 0.541863 CGCCACAACTATCCTTCCCT 59.458 55.000 0.00 0.00 0.00 4.20
43 44 1.352352 CCCTGTCTCCACCAAGTTCAT 59.648 52.381 0.00 0.00 0.00 2.57
47 48 3.248024 TGTCTCCACCAAGTTCATAGGT 58.752 45.455 0.00 0.00 35.65 3.08
54 55 4.323417 CACCAAGTTCATAGGTAGTGCAA 58.677 43.478 0.00 0.00 33.49 4.08
99 100 3.176867 CACGAAACAACACATTTACGCAC 59.823 43.478 0.00 0.00 0.00 5.34
103 104 3.332761 ACAACACATTTACGCACAGTG 57.667 42.857 0.00 0.00 36.34 3.66
109 110 3.058983 CACATTTACGCACAGTGACATGT 60.059 43.478 4.15 0.00 32.14 3.21
168 171 5.012239 TGAAAGCTGCTCCAATAATCACTT 58.988 37.500 1.00 0.00 0.00 3.16
170 173 6.830324 TGAAAGCTGCTCCAATAATCACTTAT 59.170 34.615 1.00 0.00 0.00 1.73
251 261 1.231963 AAGGACACCAACCCCTTCTT 58.768 50.000 0.00 0.00 35.52 2.52
256 266 1.071228 ACACCAACCCCTTCTTACGTC 59.929 52.381 0.00 0.00 0.00 4.34
257 267 0.689055 ACCAACCCCTTCTTACGTCC 59.311 55.000 0.00 0.00 0.00 4.79
273 283 8.984891 TCTTACGTCCGTAATTCAAGAATAAA 57.015 30.769 12.18 0.00 39.49 1.40
274 284 8.863049 TCTTACGTCCGTAATTCAAGAATAAAC 58.137 33.333 12.18 0.00 39.49 2.01
286 296 6.945938 TCAAGAATAAACGGTCCTTTTCAA 57.054 33.333 0.00 0.00 0.00 2.69
319 329 8.768955 GTTATGCTCTCATCAAGAATATCGTTT 58.231 33.333 0.00 0.00 34.22 3.60
324 334 7.551340 CTCTCATCAAGAATATCGTTTTCGAC 58.449 38.462 0.00 0.00 43.88 4.20
387 404 1.463674 AAGTGCAAGAATAAGCGGGG 58.536 50.000 0.00 0.00 0.00 5.73
396 413 1.405463 GAATAAGCGGGGCCTTTTCAG 59.595 52.381 0.84 0.00 0.00 3.02
409 426 4.937201 CCTTTTCAGGCTTTTGTTAGGT 57.063 40.909 0.00 0.00 31.53 3.08
424 441 5.666969 TGTTAGGTTCTCAATTTCACACG 57.333 39.130 0.00 0.00 0.00 4.49
502 528 1.282157 CCAAGGGTAGAGGGGTTTGAG 59.718 57.143 0.00 0.00 0.00 3.02
522 548 1.122227 TTCTTTTGCCAGCTTGCCTT 58.878 45.000 7.41 0.00 0.00 4.35
556 582 3.813443 TCCTTGAGCTCCATTATCTTGC 58.187 45.455 12.15 0.00 0.00 4.01
565 591 4.774124 CTCCATTATCTTGCTCTTGTCCA 58.226 43.478 0.00 0.00 0.00 4.02
566 592 4.517285 TCCATTATCTTGCTCTTGTCCAC 58.483 43.478 0.00 0.00 0.00 4.02
567 593 4.019411 TCCATTATCTTGCTCTTGTCCACA 60.019 41.667 0.00 0.00 0.00 4.17
568 594 4.885907 CCATTATCTTGCTCTTGTCCACAT 59.114 41.667 0.00 0.00 0.00 3.21
569 595 5.220989 CCATTATCTTGCTCTTGTCCACATG 60.221 44.000 0.00 0.00 0.00 3.21
570 596 2.936919 TCTTGCTCTTGTCCACATGT 57.063 45.000 0.00 0.00 0.00 3.21
571 597 2.771089 TCTTGCTCTTGTCCACATGTC 58.229 47.619 0.00 0.00 0.00 3.06
572 598 1.808945 CTTGCTCTTGTCCACATGTCC 59.191 52.381 0.00 0.00 0.00 4.02
573 599 0.764271 TGCTCTTGTCCACATGTCCA 59.236 50.000 0.00 0.00 0.00 4.02
574 600 1.160137 GCTCTTGTCCACATGTCCAC 58.840 55.000 0.00 0.00 0.00 4.02
575 601 1.543208 GCTCTTGTCCACATGTCCACA 60.543 52.381 0.00 0.00 0.00 4.17
576 602 2.877300 GCTCTTGTCCACATGTCCACAT 60.877 50.000 0.00 0.00 36.96 3.21
589 615 3.435105 GTCCACATGACACAAGCAAAA 57.565 42.857 0.00 0.00 43.85 2.44
590 616 3.981211 GTCCACATGACACAAGCAAAAT 58.019 40.909 0.00 0.00 43.85 1.82
591 617 3.983344 GTCCACATGACACAAGCAAAATC 59.017 43.478 0.00 0.00 43.85 2.17
592 618 3.635836 TCCACATGACACAAGCAAAATCA 59.364 39.130 0.00 0.00 0.00 2.57
593 619 4.281435 TCCACATGACACAAGCAAAATCAT 59.719 37.500 0.00 0.00 0.00 2.45
594 620 5.476254 TCCACATGACACAAGCAAAATCATA 59.524 36.000 0.00 0.00 0.00 2.15
595 621 5.803461 CCACATGACACAAGCAAAATCATAG 59.197 40.000 0.00 0.00 0.00 2.23
596 622 5.287752 CACATGACACAAGCAAAATCATAGC 59.712 40.000 0.00 0.00 0.00 2.97
597 623 5.184479 ACATGACACAAGCAAAATCATAGCT 59.816 36.000 0.00 0.00 41.03 3.32
598 624 6.375174 ACATGACACAAGCAAAATCATAGCTA 59.625 34.615 0.00 0.00 37.70 3.32
599 625 6.426980 TGACACAAGCAAAATCATAGCTAG 57.573 37.500 0.00 0.00 37.70 3.42
600 626 6.172630 TGACACAAGCAAAATCATAGCTAGA 58.827 36.000 0.00 0.00 37.70 2.43
601 627 6.654582 TGACACAAGCAAAATCATAGCTAGAA 59.345 34.615 0.00 0.00 37.70 2.10
602 628 7.081526 ACACAAGCAAAATCATAGCTAGAAG 57.918 36.000 0.00 0.00 37.70 2.85
603 629 6.881065 ACACAAGCAAAATCATAGCTAGAAGA 59.119 34.615 0.00 0.00 37.70 2.87
604 630 7.148340 ACACAAGCAAAATCATAGCTAGAAGAC 60.148 37.037 0.00 0.00 37.70 3.01
605 631 6.036517 ACAAGCAAAATCATAGCTAGAAGACG 59.963 38.462 0.00 0.00 37.70 4.18
636 662 5.072741 GGCTTGGATCCATGCTAAGAAATA 58.927 41.667 37.35 12.27 43.71 1.40
637 663 5.048434 GGCTTGGATCCATGCTAAGAAATAC 60.048 44.000 37.35 21.61 43.71 1.89
638 664 5.767168 GCTTGGATCCATGCTAAGAAATACT 59.233 40.000 34.23 0.00 41.83 2.12
639 665 6.072783 GCTTGGATCCATGCTAAGAAATACTC 60.073 42.308 34.23 10.25 41.83 2.59
640 666 5.869579 TGGATCCATGCTAAGAAATACTCC 58.130 41.667 11.44 0.00 0.00 3.85
641 667 5.221925 TGGATCCATGCTAAGAAATACTCCC 60.222 44.000 11.44 0.00 0.00 4.30
642 668 5.013599 GGATCCATGCTAAGAAATACTCCCT 59.986 44.000 6.95 0.00 0.00 4.20
643 669 5.975988 TCCATGCTAAGAAATACTCCCTT 57.024 39.130 0.00 0.00 0.00 3.95
644 670 5.930135 TCCATGCTAAGAAATACTCCCTTC 58.070 41.667 0.00 0.00 0.00 3.46
645 671 4.752101 CCATGCTAAGAAATACTCCCTTCG 59.248 45.833 0.00 0.00 0.00 3.79
646 672 5.360591 CATGCTAAGAAATACTCCCTTCGT 58.639 41.667 0.00 0.00 0.00 3.85
647 673 5.007385 TGCTAAGAAATACTCCCTTCGTC 57.993 43.478 0.00 0.00 0.00 4.20
648 674 4.142004 TGCTAAGAAATACTCCCTTCGTCC 60.142 45.833 0.00 0.00 0.00 4.79
649 675 3.521947 AAGAAATACTCCCTTCGTCCG 57.478 47.619 0.00 0.00 0.00 4.79
650 676 2.731572 AGAAATACTCCCTTCGTCCGA 58.268 47.619 0.00 0.00 0.00 4.55
651 677 3.094572 AGAAATACTCCCTTCGTCCGAA 58.905 45.455 1.81 1.81 0.00 4.30
652 678 3.512724 AGAAATACTCCCTTCGTCCGAAA 59.487 43.478 3.52 0.00 33.34 3.46
653 679 3.967332 AATACTCCCTTCGTCCGAAAA 57.033 42.857 3.52 0.00 33.34 2.29
654 680 4.482952 AATACTCCCTTCGTCCGAAAAT 57.517 40.909 3.52 0.00 33.34 1.82
655 681 5.603170 AATACTCCCTTCGTCCGAAAATA 57.397 39.130 3.52 0.00 33.34 1.40
656 682 3.242549 ACTCCCTTCGTCCGAAAATAC 57.757 47.619 3.52 0.00 33.34 1.89
657 683 2.830321 ACTCCCTTCGTCCGAAAATACT 59.170 45.455 3.52 0.00 33.34 2.12
658 684 3.260128 ACTCCCTTCGTCCGAAAATACTT 59.740 43.478 3.52 0.00 33.34 2.24
659 685 3.592059 TCCCTTCGTCCGAAAATACTTG 58.408 45.455 3.52 0.00 33.34 3.16
660 686 3.007182 TCCCTTCGTCCGAAAATACTTGT 59.993 43.478 3.52 0.00 33.34 3.16
661 687 3.370061 CCCTTCGTCCGAAAATACTTGTC 59.630 47.826 3.52 0.00 33.34 3.18
662 688 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
663 689 4.630069 CCTTCGTCCGAAAATACTTGTCAT 59.370 41.667 3.52 0.00 33.34 3.06
664 690 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
665 691 4.811908 TCGTCCGAAAATACTTGTCATCA 58.188 39.130 0.00 0.00 0.00 3.07
666 692 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
667 693 5.697178 TCGTCCGAAAATACTTGTCATCAAA 59.303 36.000 0.00 0.00 32.87 2.69
668 694 6.203145 TCGTCCGAAAATACTTGTCATCAAAA 59.797 34.615 0.00 0.00 32.87 2.44
669 695 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
670 696 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
671 697 9.834628 GTCCGAAAATACTTGTCATCAAAATAA 57.165 29.630 0.00 0.00 32.87 1.40
748 774 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
749 775 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
750 776 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
751 777 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
752 778 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
753 779 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
754 780 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
755 781 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
756 782 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
757 783 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
758 784 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
759 785 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
760 786 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
761 787 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
762 788 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
769 795 3.069158 CGGACGGAGGGAGTATATTGTTT 59.931 47.826 0.00 0.00 0.00 2.83
858 889 3.624861 ACAATTGCTATGGCTTCTTCTCG 59.375 43.478 5.05 0.00 39.59 4.04
1492 1658 2.736192 GCTTTCAGTCTCTGCTCTGTTC 59.264 50.000 0.00 0.00 33.89 3.18
1546 1870 7.832503 ACAACAAGAAAACAATCCAAAGAAG 57.167 32.000 0.00 0.00 0.00 2.85
1581 1905 0.809241 GGCTCTGTCTGCTCCAATCG 60.809 60.000 0.00 0.00 0.00 3.34
1582 1906 0.108424 GCTCTGTCTGCTCCAATCGT 60.108 55.000 0.00 0.00 0.00 3.73
1583 1907 1.135139 GCTCTGTCTGCTCCAATCGTA 59.865 52.381 0.00 0.00 0.00 3.43
1584 1908 2.803451 CTCTGTCTGCTCCAATCGTAC 58.197 52.381 0.00 0.00 0.00 3.67
1585 1909 2.164422 CTCTGTCTGCTCCAATCGTACA 59.836 50.000 0.00 0.00 0.00 2.90
1586 1910 2.560981 TCTGTCTGCTCCAATCGTACAA 59.439 45.455 0.00 0.00 0.00 2.41
1587 1911 3.006430 TCTGTCTGCTCCAATCGTACAAA 59.994 43.478 0.00 0.00 0.00 2.83
1588 1912 3.064207 TGTCTGCTCCAATCGTACAAAC 58.936 45.455 0.00 0.00 0.00 2.93
1589 1913 2.415512 GTCTGCTCCAATCGTACAAACC 59.584 50.000 0.00 0.00 0.00 3.27
1590 1914 2.037902 TCTGCTCCAATCGTACAAACCA 59.962 45.455 0.00 0.00 0.00 3.67
1591 1915 2.811431 CTGCTCCAATCGTACAAACCAA 59.189 45.455 0.00 0.00 0.00 3.67
1592 1916 3.215151 TGCTCCAATCGTACAAACCAAA 58.785 40.909 0.00 0.00 0.00 3.28
1593 1917 3.632604 TGCTCCAATCGTACAAACCAAAA 59.367 39.130 0.00 0.00 0.00 2.44
1594 1918 4.098044 TGCTCCAATCGTACAAACCAAAAA 59.902 37.500 0.00 0.00 0.00 1.94
1595 1919 4.679654 GCTCCAATCGTACAAACCAAAAAG 59.320 41.667 0.00 0.00 0.00 2.27
1635 1969 7.475771 TCTGTTTTGTTCCATTTTTATGTGC 57.524 32.000 0.00 0.00 0.00 4.57
1671 2007 1.308069 GGCATACCACAGTGGCACAG 61.308 60.000 20.48 15.03 42.67 3.66
1672 2008 0.606401 GCATACCACAGTGGCACAGT 60.606 55.000 20.48 15.80 46.79 3.55
1684 2022 4.081972 CAGTGGCACAGTAGTACAGAGATT 60.082 45.833 21.41 0.00 41.96 2.40
1730 2075 6.040842 AGAGTAATTTTGATGCAACACAACCT 59.959 34.615 0.00 0.00 0.00 3.50
1731 2076 6.581712 AGTAATTTTGATGCAACACAACCTT 58.418 32.000 0.00 0.00 0.00 3.50
1732 2077 7.721402 AGTAATTTTGATGCAACACAACCTTA 58.279 30.769 0.00 0.00 0.00 2.69
1733 2078 8.367156 AGTAATTTTGATGCAACACAACCTTAT 58.633 29.630 0.00 0.00 0.00 1.73
1770 2151 7.971168 ACAGTTCTAGAGAAGTACAATTCATCG 59.029 37.037 0.00 0.00 36.04 3.84
1817 2238 2.672908 CTGGGAGGCAGCATCACA 59.327 61.111 12.32 12.32 0.00 3.58
1883 2680 9.699410 TTCATAATAATGTTTTCTGGTCCAGAT 57.301 29.630 22.45 8.92 36.10 2.90
1944 2775 1.619827 CGTCCTTTACCTACCACACCA 59.380 52.381 0.00 0.00 0.00 4.17
1998 2829 6.363473 CCGAACTTTCAGTGTTATTGTCTTC 58.637 40.000 0.00 0.00 0.00 2.87
2003 2834 7.920738 ACTTTCAGTGTTATTGTCTTCAGTTC 58.079 34.615 0.00 0.00 0.00 3.01
2004 2835 6.861065 TTCAGTGTTATTGTCTTCAGTTCC 57.139 37.500 0.00 0.00 0.00 3.62
2020 2861 2.835764 AGTTCCCGCCTAACTGTATTCA 59.164 45.455 0.00 0.00 35.87 2.57
2068 2909 3.243839 GGATCCAACATTGCACACACTTT 60.244 43.478 6.95 0.00 0.00 2.66
2073 2914 6.344500 TCCAACATTGCACACACTTTATTTT 58.656 32.000 0.00 0.00 0.00 1.82
2103 3275 2.036733 TCCCAACCTACACTCTGTTTCG 59.963 50.000 0.00 0.00 0.00 3.46
2108 3280 2.102588 ACCTACACTCTGTTTCGCAGTT 59.897 45.455 0.00 0.00 45.23 3.16
2109 3281 3.131396 CCTACACTCTGTTTCGCAGTTT 58.869 45.455 0.00 0.00 45.23 2.66
2161 3438 2.087646 CAGGGTTTTCTAGGCTTGAGC 58.912 52.381 0.00 0.00 41.14 4.26
2383 3784 3.937814 TGTCATAATCTGCGACCAAGTT 58.062 40.909 0.00 0.00 0.00 2.66
2429 3833 1.993370 GTGTTTGCTTCGCGATACTCT 59.007 47.619 10.88 0.00 0.00 3.24
2452 3864 2.552031 CTGCTGATCATGTCTCCAGTG 58.448 52.381 0.00 0.00 0.00 3.66
2453 3865 2.167900 CTGCTGATCATGTCTCCAGTGA 59.832 50.000 0.00 0.00 0.00 3.41
2479 3904 1.066071 GTTGTAAGGGCTCAGAGGTCC 60.066 57.143 0.00 0.00 0.00 4.46
2542 3967 6.187727 ACTGGTTTACTTCTTCATGAGGAA 57.812 37.500 18.20 18.20 0.00 3.36
2545 3970 5.468746 TGGTTTACTTCTTCATGAGGAAACG 59.531 40.000 19.50 12.22 34.44 3.60
2601 4026 3.804036 CACCGCTTGTGGGATCTAATAA 58.196 45.455 5.16 0.00 41.52 1.40
2752 4199 2.506061 CCAGATCGGGGGCTCTCTG 61.506 68.421 3.59 0.00 35.88 3.35
2842 4289 2.102553 GCAGGCTACGTCTCCGAC 59.897 66.667 0.00 0.00 37.88 4.79
2944 4392 3.234630 CTCCTCCGGTTTCCACGCA 62.235 63.158 0.00 0.00 0.00 5.24
2975 4423 4.070552 GCTCGGTCCTTGTCGGCT 62.071 66.667 0.00 0.00 0.00 5.52
3025 4473 3.636764 TGCCGAGCATAACTTCAGAGATA 59.363 43.478 0.00 0.00 31.71 1.98
3043 4491 6.263168 CAGAGATATTCGGGCTAAACCATTTT 59.737 38.462 0.00 0.00 42.05 1.82
3121 4569 2.740826 CGCGTGGTCGGGTTCATT 60.741 61.111 0.00 0.00 43.36 2.57
3157 4606 4.488790 CAAGGTGAGCTTGCCTGT 57.511 55.556 11.73 0.27 34.90 4.00
3202 4651 0.959553 CCTTCCTGATCATGGCATGC 59.040 55.000 22.56 9.90 0.00 4.06
3271 4727 5.485620 ACAAGGAAGTTTTATAGACGGGTC 58.514 41.667 0.00 0.00 0.00 4.46
3277 4733 9.322769 AGGAAGTTTTATAGACGGGTCATATAT 57.677 33.333 1.17 0.00 0.00 0.86
3290 4746 3.594134 GTCATATATGCCAGACTGCTCC 58.406 50.000 7.92 0.00 0.00 4.70
3345 4801 8.706322 ATACAAACCAGTTTTCCTGTATCTTT 57.294 30.769 0.00 0.00 39.74 2.52
3346 4802 9.802039 ATACAAACCAGTTTTCCTGTATCTTTA 57.198 29.630 0.00 0.00 39.74 1.85
3347 4803 8.528044 ACAAACCAGTTTTCCTGTATCTTTAA 57.472 30.769 0.00 0.00 39.74 1.52
3399 4855 8.607459 CATTTGGTATTGTAGCACTCTCTTTAG 58.393 37.037 0.00 0.00 35.67 1.85
3404 4860 7.810759 GGTATTGTAGCACTCTCTTTAGATAGC 59.189 40.741 0.00 0.00 33.74 2.97
3491 4950 7.755582 TCAGTTGAGTGACACATATTTATCG 57.244 36.000 8.59 0.00 0.00 2.92
3493 4952 6.018751 CAGTTGAGTGACACATATTTATCGGG 60.019 42.308 8.59 0.00 0.00 5.14
3497 4968 7.106890 TGAGTGACACATATTTATCGGGAAAA 58.893 34.615 8.59 0.00 0.00 2.29
3522 4993 3.257127 GCTGAGTGATACATACTCCCTCC 59.743 52.174 0.00 0.00 43.00 4.30
3536 5007 9.322769 ACATACTCCCTCCGTAAAGAAATATAT 57.677 33.333 0.00 0.00 0.00 0.86
3540 5011 6.698380 TCCCTCCGTAAAGAAATATATGAGC 58.302 40.000 0.00 0.00 0.00 4.26
3544 5015 7.170998 CCTCCGTAAAGAAATATATGAGCGTTT 59.829 37.037 0.00 0.00 0.00 3.60
3545 5016 9.188588 CTCCGTAAAGAAATATATGAGCGTTTA 57.811 33.333 0.00 0.00 0.00 2.01
3546 5017 9.188588 TCCGTAAAGAAATATATGAGCGTTTAG 57.811 33.333 0.00 0.00 0.00 1.85
3547 5018 9.188588 CCGTAAAGAAATATATGAGCGTTTAGA 57.811 33.333 0.00 0.00 0.00 2.10
3557 5028 4.002906 TGAGCGTTTAGATCACCAAAGT 57.997 40.909 0.00 0.00 40.80 2.66
3558 5029 5.142061 TGAGCGTTTAGATCACCAAAGTA 57.858 39.130 0.00 0.00 40.80 2.24
3559 5030 5.168569 TGAGCGTTTAGATCACCAAAGTAG 58.831 41.667 0.00 0.00 40.80 2.57
3560 5031 5.148651 AGCGTTTAGATCACCAAAGTAGT 57.851 39.130 0.00 0.00 0.00 2.73
3561 5032 4.929808 AGCGTTTAGATCACCAAAGTAGTG 59.070 41.667 0.00 0.00 36.54 2.74
3574 5045 9.256228 TCACCAAAGTAGTGATCTAAATACTCT 57.744 33.333 0.00 0.00 39.29 3.24
3575 5046 9.877178 CACCAAAGTAGTGATCTAAATACTCTT 57.123 33.333 0.00 0.00 37.42 2.85
3606 5077 8.763984 TCTTTATAGAGGGAGTACTTTACAGG 57.236 38.462 0.00 0.00 0.00 4.00
3607 5078 8.563502 TCTTTATAGAGGGAGTACTTTACAGGA 58.436 37.037 0.00 0.00 0.00 3.86
3608 5079 8.763984 TTTATAGAGGGAGTACTTTACAGGAG 57.236 38.462 0.00 0.00 0.00 3.69
3614 5085 3.995048 GGAGTACTTTACAGGAGTTGTGC 59.005 47.826 0.00 0.00 41.10 4.57
3622 5093 3.393089 ACAGGAGTTGTGCTCTTACAG 57.607 47.619 0.00 0.00 43.62 2.74
3641 5112 7.990314 TCTTACAGCAATACCATGTTAGCATTA 59.010 33.333 0.00 0.00 31.99 1.90
3651 5122 9.944376 ATACCATGTTAGCATTAGGTATTGTAG 57.056 33.333 12.92 0.00 39.42 2.74
3653 5124 6.149474 CCATGTTAGCATTAGGTATTGTAGCC 59.851 42.308 0.00 0.00 31.99 3.93
3654 5125 6.494666 TGTTAGCATTAGGTATTGTAGCCT 57.505 37.500 0.00 0.00 38.81 4.58
3655 5126 6.522054 TGTTAGCATTAGGTATTGTAGCCTC 58.478 40.000 0.00 0.00 36.38 4.70
3656 5127 4.625607 AGCATTAGGTATTGTAGCCTCC 57.374 45.455 0.00 0.00 36.38 4.30
3657 5128 3.006967 AGCATTAGGTATTGTAGCCTCCG 59.993 47.826 0.00 0.00 36.38 4.63
3658 5129 3.244112 GCATTAGGTATTGTAGCCTCCGT 60.244 47.826 0.00 0.00 36.38 4.69
3659 5130 4.557205 CATTAGGTATTGTAGCCTCCGTC 58.443 47.826 0.00 0.00 36.38 4.79
3660 5131 1.411041 AGGTATTGTAGCCTCCGTCC 58.589 55.000 0.00 0.00 0.00 4.79
3661 5132 0.391966 GGTATTGTAGCCTCCGTCCC 59.608 60.000 0.00 0.00 0.00 4.46
3662 5133 1.117150 GTATTGTAGCCTCCGTCCCA 58.883 55.000 0.00 0.00 0.00 4.37
3663 5134 1.483415 GTATTGTAGCCTCCGTCCCAA 59.517 52.381 0.00 0.00 0.00 4.12
3664 5135 0.988832 ATTGTAGCCTCCGTCCCAAA 59.011 50.000 0.00 0.00 0.00 3.28
3665 5136 0.766131 TTGTAGCCTCCGTCCCAAAA 59.234 50.000 0.00 0.00 0.00 2.44
3666 5137 0.988832 TGTAGCCTCCGTCCCAAAAT 59.011 50.000 0.00 0.00 0.00 1.82
3667 5138 2.189676 TGTAGCCTCCGTCCCAAAATA 58.810 47.619 0.00 0.00 0.00 1.40
3668 5139 2.572556 TGTAGCCTCCGTCCCAAAATAA 59.427 45.455 0.00 0.00 0.00 1.40
3669 5140 2.420058 AGCCTCCGTCCCAAAATAAG 57.580 50.000 0.00 0.00 0.00 1.73
3670 5141 1.633945 AGCCTCCGTCCCAAAATAAGT 59.366 47.619 0.00 0.00 0.00 2.24
3671 5142 1.743394 GCCTCCGTCCCAAAATAAGTG 59.257 52.381 0.00 0.00 0.00 3.16
3672 5143 2.878526 GCCTCCGTCCCAAAATAAGTGT 60.879 50.000 0.00 0.00 0.00 3.55
3673 5144 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3674 5145 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3675 5146 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3676 5147 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
3677 5148 3.190535 CCGTCCCAAAATAAGTGTCTTGG 59.809 47.826 0.00 0.00 38.45 3.61
3678 5149 3.818773 CGTCCCAAAATAAGTGTCTTGGT 59.181 43.478 0.00 0.00 37.25 3.67
3679 5150 4.277423 CGTCCCAAAATAAGTGTCTTGGTT 59.723 41.667 0.00 0.00 37.25 3.67
3680 5151 5.221165 CGTCCCAAAATAAGTGTCTTGGTTT 60.221 40.000 0.00 0.00 37.25 3.27
3681 5152 6.578944 GTCCCAAAATAAGTGTCTTGGTTTT 58.421 36.000 0.00 0.00 37.25 2.43
3682 5153 7.468906 CGTCCCAAAATAAGTGTCTTGGTTTTA 60.469 37.037 0.00 0.00 37.25 1.52
3683 5154 7.865889 GTCCCAAAATAAGTGTCTTGGTTTTAG 59.134 37.037 0.00 0.00 37.25 1.85
3684 5155 7.562088 TCCCAAAATAAGTGTCTTGGTTTTAGT 59.438 33.333 0.00 0.00 37.25 2.24
3685 5156 8.201464 CCCAAAATAAGTGTCTTGGTTTTAGTT 58.799 33.333 0.00 0.00 37.25 2.24
3686 5157 9.244799 CCAAAATAAGTGTCTTGGTTTTAGTTC 57.755 33.333 0.00 0.00 34.77 3.01
3687 5158 9.796120 CAAAATAAGTGTCTTGGTTTTAGTTCA 57.204 29.630 0.00 0.00 0.00 3.18
3693 5164 8.702163 AGTGTCTTGGTTTTAGTTCAAATTTG 57.298 30.769 12.15 12.15 0.00 2.32
3694 5165 8.527810 AGTGTCTTGGTTTTAGTTCAAATTTGA 58.472 29.630 16.91 16.91 34.92 2.69
3695 5166 9.145865 GTGTCTTGGTTTTAGTTCAAATTTGAA 57.854 29.630 26.01 26.01 44.31 2.69
3708 5179 7.458038 TTCAAATTTGAACTAAAACCGCTTC 57.542 32.000 26.01 0.00 41.88 3.86
3709 5180 6.565234 TCAAATTTGAACTAAAACCGCTTCA 58.435 32.000 18.45 0.00 33.55 3.02
3710 5181 6.474102 TCAAATTTGAACTAAAACCGCTTCAC 59.526 34.615 18.45 0.00 33.55 3.18
3711 5182 5.767816 ATTTGAACTAAAACCGCTTCACT 57.232 34.783 0.00 0.00 0.00 3.41
3712 5183 5.570234 TTTGAACTAAAACCGCTTCACTT 57.430 34.783 0.00 0.00 0.00 3.16
3713 5184 6.680874 TTTGAACTAAAACCGCTTCACTTA 57.319 33.333 0.00 0.00 0.00 2.24
3714 5185 6.870971 TTGAACTAAAACCGCTTCACTTAT 57.129 33.333 0.00 0.00 0.00 1.73
3715 5186 6.870971 TGAACTAAAACCGCTTCACTTATT 57.129 33.333 0.00 0.00 0.00 1.40
3716 5187 7.266922 TGAACTAAAACCGCTTCACTTATTT 57.733 32.000 0.00 0.00 0.00 1.40
3717 5188 7.708998 TGAACTAAAACCGCTTCACTTATTTT 58.291 30.769 0.00 0.00 0.00 1.82
3718 5189 7.646130 TGAACTAAAACCGCTTCACTTATTTTG 59.354 33.333 0.00 0.00 0.00 2.44
3719 5190 6.443792 ACTAAAACCGCTTCACTTATTTTGG 58.556 36.000 0.00 0.00 0.00 3.28
3720 5191 3.934457 AACCGCTTCACTTATTTTGGG 57.066 42.857 0.00 0.00 0.00 4.12
3721 5192 3.149005 ACCGCTTCACTTATTTTGGGA 57.851 42.857 0.00 0.00 0.00 4.37
3722 5193 2.817844 ACCGCTTCACTTATTTTGGGAC 59.182 45.455 0.00 0.00 0.00 4.46
3723 5194 2.159572 CCGCTTCACTTATTTTGGGACG 60.160 50.000 0.00 0.00 0.00 4.79
3724 5195 2.159572 CGCTTCACTTATTTTGGGACGG 60.160 50.000 0.00 0.00 0.00 4.79
3725 5196 3.078837 GCTTCACTTATTTTGGGACGGA 58.921 45.455 0.00 0.00 0.00 4.69
3726 5197 3.127030 GCTTCACTTATTTTGGGACGGAG 59.873 47.826 0.00 0.00 0.00 4.63
3727 5198 3.343941 TCACTTATTTTGGGACGGAGG 57.656 47.619 0.00 0.00 0.00 4.30
3730 5201 4.472108 TCACTTATTTTGGGACGGAGGTAT 59.528 41.667 0.00 0.00 0.00 2.73
3734 5205 8.152246 CACTTATTTTGGGACGGAGGTATTATA 58.848 37.037 0.00 0.00 0.00 0.98
3760 5231 9.918630 ATAGCAACATTATAATGGCAATTTCTC 57.081 29.630 25.45 7.88 40.70 2.87
3761 5232 8.015185 AGCAACATTATAATGGCAATTTCTCT 57.985 30.769 25.45 9.54 40.70 3.10
3866 5345 3.258622 GTGTCTGTAAGGGAGCACTAGTT 59.741 47.826 0.00 0.00 0.00 2.24
3867 5346 3.901844 TGTCTGTAAGGGAGCACTAGTTT 59.098 43.478 0.00 0.00 0.00 2.66
3873 5356 4.910458 AAGGGAGCACTAGTTTACATGT 57.090 40.909 2.69 2.69 0.00 3.21
3882 5365 5.926542 GCACTAGTTTACATGTTCACTCTGA 59.073 40.000 2.30 0.00 0.00 3.27
3898 5381 6.116806 TCACTCTGATCCTGTAACTCTACTC 58.883 44.000 0.00 0.00 0.00 2.59
3908 5391 4.392047 TGTAACTCTACTCGTCACCTTGA 58.608 43.478 0.00 0.00 0.00 3.02
3920 5406 2.932614 GTCACCTTGATTGATGTCTCCG 59.067 50.000 0.00 0.00 0.00 4.63
3927 5413 2.499693 TGATTGATGTCTCCGTTGGCTA 59.500 45.455 0.00 0.00 0.00 3.93
3996 5494 5.014123 TCCTTTATCTCCTTGGCTTTCTTCA 59.986 40.000 0.00 0.00 0.00 3.02
4041 5539 3.804193 CCTTCGCCTTTGCCGCTC 61.804 66.667 0.00 0.00 0.00 5.03
4107 5605 1.604378 CACACATCAGGGTCCCTCC 59.396 63.158 7.76 0.00 0.00 4.30
4159 5658 0.179076 CCACATCAGCAGGCGACATA 60.179 55.000 0.00 0.00 0.00 2.29
4230 5729 3.260884 ACGATGTCCATGTAGTTCTTGGT 59.739 43.478 0.00 0.00 40.77 3.67
4270 5769 2.428544 AGCGACAGTAGGACATCTCT 57.571 50.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.261897 ACCTATGAACTTGGTGGAGACAG 59.738 47.826 0.00 0.00 44.46 3.51
26 27 3.248024 ACCTATGAACTTGGTGGAGACA 58.752 45.455 0.00 0.00 31.22 3.41
43 44 2.574929 CCGCCGTTGCACTACCTA 59.425 61.111 0.00 0.00 37.32 3.08
80 81 4.204168 CACTGTGCGTAAATGTGTTGTTTC 59.796 41.667 0.00 0.00 0.00 2.78
143 146 5.067413 AGTGATTATTGGAGCAGCTTTCATG 59.933 40.000 0.00 0.00 0.00 3.07
213 223 9.366216 GTGTCCTTTTTCTTTGTTAAATTGTCT 57.634 29.630 0.00 0.00 0.00 3.41
217 227 8.941977 GTTGGTGTCCTTTTTCTTTGTTAAATT 58.058 29.630 0.00 0.00 0.00 1.82
251 261 7.208379 CGTTTATTCTTGAATTACGGACGTA 57.792 36.000 16.04 0.00 0.00 3.57
257 267 6.657836 AGGACCGTTTATTCTTGAATTACG 57.342 37.500 16.51 16.51 0.00 3.18
286 296 4.574674 TGATGAGAGCATAACAAACCCT 57.425 40.909 0.00 0.00 34.11 4.34
396 413 6.420903 GTGAAATTGAGAACCTAACAAAAGCC 59.579 38.462 0.00 0.00 0.00 4.35
398 415 7.165812 CGTGTGAAATTGAGAACCTAACAAAAG 59.834 37.037 0.00 0.00 0.00 2.27
407 424 4.669197 CGAATCCGTGTGAAATTGAGAACC 60.669 45.833 0.00 0.00 0.00 3.62
409 426 3.120338 GCGAATCCGTGTGAAATTGAGAA 60.120 43.478 0.00 0.00 38.24 2.87
424 441 6.223138 TGTAATTATCGAATGTGCGAATCC 57.777 37.500 0.00 0.00 44.22 3.01
457 474 8.957466 GGAAGTACTCCTACTAAATTGCAATTT 58.043 33.333 33.26 33.26 41.61 1.82
470 492 4.864726 TCTACCCTTGGAAGTACTCCTAC 58.135 47.826 0.00 0.00 45.64 3.18
471 493 4.079327 CCTCTACCCTTGGAAGTACTCCTA 60.079 50.000 0.00 0.00 45.64 2.94
472 494 3.309994 CCTCTACCCTTGGAAGTACTCCT 60.310 52.174 0.00 0.00 45.64 3.69
473 495 3.032459 CCTCTACCCTTGGAAGTACTCC 58.968 54.545 0.00 0.00 45.64 3.85
476 498 2.117051 CCCCTCTACCCTTGGAAGTAC 58.883 57.143 0.00 0.00 0.00 2.73
502 528 0.390492 AGGCAAGCTGGCAAAAGAAC 59.610 50.000 16.69 0.00 46.46 3.01
522 548 5.882557 GGAGCTCAAGGAGTATTCAATCAAA 59.117 40.000 17.19 0.00 31.39 2.69
556 582 2.549064 TGTGGACATGTGGACAAGAG 57.451 50.000 1.15 0.00 0.00 2.85
570 596 3.635836 TGATTTTGCTTGTGTCATGTGGA 59.364 39.130 0.00 0.00 0.00 4.02
571 597 3.979948 TGATTTTGCTTGTGTCATGTGG 58.020 40.909 0.00 0.00 0.00 4.17
572 598 5.287752 GCTATGATTTTGCTTGTGTCATGTG 59.712 40.000 0.00 0.00 32.31 3.21
573 599 5.184479 AGCTATGATTTTGCTTGTGTCATGT 59.816 36.000 0.00 0.00 32.61 3.21
574 600 5.647589 AGCTATGATTTTGCTTGTGTCATG 58.352 37.500 0.00 0.00 32.61 3.07
575 601 5.909621 AGCTATGATTTTGCTTGTGTCAT 57.090 34.783 0.00 0.00 32.61 3.06
576 602 6.172630 TCTAGCTATGATTTTGCTTGTGTCA 58.827 36.000 0.00 0.00 38.15 3.58
577 603 6.668541 TCTAGCTATGATTTTGCTTGTGTC 57.331 37.500 0.00 0.00 38.15 3.67
578 604 6.881065 TCTTCTAGCTATGATTTTGCTTGTGT 59.119 34.615 0.00 0.00 38.15 3.72
579 605 7.185453 GTCTTCTAGCTATGATTTTGCTTGTG 58.815 38.462 0.00 0.00 38.15 3.33
580 606 6.036517 CGTCTTCTAGCTATGATTTTGCTTGT 59.963 38.462 0.00 0.00 38.15 3.16
581 607 6.256539 TCGTCTTCTAGCTATGATTTTGCTTG 59.743 38.462 0.00 0.00 38.15 4.01
582 608 6.256757 GTCGTCTTCTAGCTATGATTTTGCTT 59.743 38.462 0.00 0.00 38.15 3.91
583 609 5.751028 GTCGTCTTCTAGCTATGATTTTGCT 59.249 40.000 0.00 0.00 40.43 3.91
584 610 5.520288 TGTCGTCTTCTAGCTATGATTTTGC 59.480 40.000 0.00 0.00 0.00 3.68
585 611 7.276658 AGTTGTCGTCTTCTAGCTATGATTTTG 59.723 37.037 0.00 0.00 0.00 2.44
586 612 7.324178 AGTTGTCGTCTTCTAGCTATGATTTT 58.676 34.615 0.00 0.00 0.00 1.82
587 613 6.868622 AGTTGTCGTCTTCTAGCTATGATTT 58.131 36.000 0.00 0.00 0.00 2.17
588 614 6.458232 AGTTGTCGTCTTCTAGCTATGATT 57.542 37.500 0.00 0.00 0.00 2.57
589 615 6.269315 CAAGTTGTCGTCTTCTAGCTATGAT 58.731 40.000 0.00 0.00 0.00 2.45
590 616 5.393135 CCAAGTTGTCGTCTTCTAGCTATGA 60.393 44.000 1.45 0.00 0.00 2.15
591 617 4.800993 CCAAGTTGTCGTCTTCTAGCTATG 59.199 45.833 1.45 0.00 0.00 2.23
592 618 4.678309 GCCAAGTTGTCGTCTTCTAGCTAT 60.678 45.833 1.45 0.00 0.00 2.97
593 619 3.367087 GCCAAGTTGTCGTCTTCTAGCTA 60.367 47.826 1.45 0.00 0.00 3.32
594 620 2.610727 GCCAAGTTGTCGTCTTCTAGCT 60.611 50.000 1.45 0.00 0.00 3.32
595 621 1.727335 GCCAAGTTGTCGTCTTCTAGC 59.273 52.381 1.45 0.00 0.00 3.42
596 622 3.305398 AGCCAAGTTGTCGTCTTCTAG 57.695 47.619 1.45 0.00 0.00 2.43
597 623 3.390135 CAAGCCAAGTTGTCGTCTTCTA 58.610 45.455 1.45 0.00 0.00 2.10
598 624 2.213499 CAAGCCAAGTTGTCGTCTTCT 58.787 47.619 1.45 0.00 0.00 2.85
599 625 1.264288 CCAAGCCAAGTTGTCGTCTTC 59.736 52.381 1.45 0.00 0.00 2.87
600 626 1.134220 TCCAAGCCAAGTTGTCGTCTT 60.134 47.619 1.45 0.00 0.00 3.01
601 627 0.468226 TCCAAGCCAAGTTGTCGTCT 59.532 50.000 1.45 0.00 0.00 4.18
602 628 1.464997 GATCCAAGCCAAGTTGTCGTC 59.535 52.381 1.45 0.00 0.00 4.20
603 629 1.523758 GATCCAAGCCAAGTTGTCGT 58.476 50.000 1.45 0.00 0.00 4.34
604 630 0.804989 GGATCCAAGCCAAGTTGTCG 59.195 55.000 6.95 0.00 0.00 4.35
605 631 1.909700 TGGATCCAAGCCAAGTTGTC 58.090 50.000 13.46 0.00 31.13 3.18
636 662 2.830321 AGTATTTTCGGACGAAGGGAGT 59.170 45.455 7.25 0.00 35.38 3.85
637 663 3.521947 AGTATTTTCGGACGAAGGGAG 57.478 47.619 7.25 0.00 35.38 4.30
638 664 3.007182 ACAAGTATTTTCGGACGAAGGGA 59.993 43.478 7.25 0.00 35.38 4.20
639 665 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
640 666 3.991773 TGACAAGTATTTTCGGACGAAGG 59.008 43.478 7.25 0.00 35.38 3.46
641 667 5.347635 TGATGACAAGTATTTTCGGACGAAG 59.652 40.000 7.25 0.00 35.38 3.79
642 668 5.231702 TGATGACAAGTATTTTCGGACGAA 58.768 37.500 2.62 2.62 0.00 3.85
643 669 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
644 670 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
645 671 9.834628 TTATTTTGATGACAAGTATTTTCGGAC 57.165 29.630 0.00 0.00 37.32 4.79
723 749 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
724 750 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
725 751 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
726 752 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
727 753 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
728 754 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
729 755 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
730 756 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
731 757 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
732 758 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
733 759 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
734 760 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
735 761 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
736 762 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
737 763 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
738 764 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
739 765 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
740 766 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
741 767 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
742 768 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
743 769 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
744 770 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
745 771 2.889045 CAATATACTCCCTCCGTCCGAA 59.111 50.000 0.00 0.00 0.00 4.30
746 772 2.158564 ACAATATACTCCCTCCGTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
747 773 2.236766 ACAATATACTCCCTCCGTCCG 58.763 52.381 0.00 0.00 0.00 4.79
748 774 4.100498 TCAAACAATATACTCCCTCCGTCC 59.900 45.833 0.00 0.00 0.00 4.79
749 775 5.272283 TCAAACAATATACTCCCTCCGTC 57.728 43.478 0.00 0.00 0.00 4.79
750 776 5.888982 ATCAAACAATATACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
751 777 8.094548 TGATTATCAAACAATATACTCCCTCCG 58.905 37.037 0.00 0.00 0.00 4.63
752 778 9.965902 ATGATTATCAAACAATATACTCCCTCC 57.034 33.333 0.00 0.00 0.00 4.30
754 780 9.236006 GCATGATTATCAAACAATATACTCCCT 57.764 33.333 0.00 0.00 0.00 4.20
755 781 9.236006 AGCATGATTATCAAACAATATACTCCC 57.764 33.333 0.00 0.00 0.00 4.30
969 1001 0.671781 CTGCCGGAACAGAAGAGGTG 60.672 60.000 5.05 0.00 40.25 4.00
970 1002 1.674057 CTGCCGGAACAGAAGAGGT 59.326 57.895 5.05 0.00 40.25 3.85
1231 1285 4.131088 GCCGGTGAGGAGGACGAC 62.131 72.222 1.90 0.00 45.00 4.34
1492 1658 4.035324 CAGAGCAAATTACTGATGCAGAGG 59.965 45.833 0.82 0.00 42.45 3.69
1566 1890 2.654749 TGTACGATTGGAGCAGACAG 57.345 50.000 0.00 0.00 0.00 3.51
1581 1905 4.744631 CACATGCCTCTTTTTGGTTTGTAC 59.255 41.667 0.00 0.00 0.00 2.90
1582 1906 4.646945 TCACATGCCTCTTTTTGGTTTGTA 59.353 37.500 0.00 0.00 0.00 2.41
1583 1907 3.450457 TCACATGCCTCTTTTTGGTTTGT 59.550 39.130 0.00 0.00 0.00 2.83
1584 1908 4.057406 TCACATGCCTCTTTTTGGTTTG 57.943 40.909 0.00 0.00 0.00 2.93
1585 1909 4.751767 TTCACATGCCTCTTTTTGGTTT 57.248 36.364 0.00 0.00 0.00 3.27
1586 1910 4.443315 CCTTTCACATGCCTCTTTTTGGTT 60.443 41.667 0.00 0.00 0.00 3.67
1587 1911 3.070015 CCTTTCACATGCCTCTTTTTGGT 59.930 43.478 0.00 0.00 0.00 3.67
1588 1912 3.321682 TCCTTTCACATGCCTCTTTTTGG 59.678 43.478 0.00 0.00 0.00 3.28
1589 1913 4.589216 TCCTTTCACATGCCTCTTTTTG 57.411 40.909 0.00 0.00 0.00 2.44
1590 1914 5.047519 CAGATCCTTTCACATGCCTCTTTTT 60.048 40.000 0.00 0.00 0.00 1.94
1591 1915 4.461781 CAGATCCTTTCACATGCCTCTTTT 59.538 41.667 0.00 0.00 0.00 2.27
1592 1916 4.015084 CAGATCCTTTCACATGCCTCTTT 58.985 43.478 0.00 0.00 0.00 2.52
1593 1917 3.009916 ACAGATCCTTTCACATGCCTCTT 59.990 43.478 0.00 0.00 0.00 2.85
1594 1918 2.575279 ACAGATCCTTTCACATGCCTCT 59.425 45.455 0.00 0.00 0.00 3.69
1595 1919 2.996631 ACAGATCCTTTCACATGCCTC 58.003 47.619 0.00 0.00 0.00 4.70
1665 2001 5.463724 GCATAAATCTCTGTACTACTGTGCC 59.536 44.000 0.00 0.00 0.00 5.01
1666 2002 6.199908 CAGCATAAATCTCTGTACTACTGTGC 59.800 42.308 0.00 0.00 0.00 4.57
1671 2007 8.934507 ACTTTCAGCATAAATCTCTGTACTAC 57.065 34.615 0.00 0.00 0.00 2.73
1684 2022 6.211584 ACTCTCCTTGACTACTTTCAGCATAA 59.788 38.462 0.00 0.00 0.00 1.90
1732 2077 9.921637 CTTCTCTAGAACTGTTTGTCTCTAAAT 57.078 33.333 0.00 0.00 0.00 1.40
1733 2078 8.915036 ACTTCTCTAGAACTGTTTGTCTCTAAA 58.085 33.333 0.00 0.00 0.00 1.85
1755 2100 5.316770 GTTGTGCTCGATGAATTGTACTTC 58.683 41.667 0.00 0.00 0.00 3.01
1817 2238 6.885922 ACACAACTGTACTTTTCTAGAACCT 58.114 36.000 4.18 0.00 0.00 3.50
1944 2775 5.184892 AGACAAAAATGATAGCTCCACCT 57.815 39.130 0.00 0.00 0.00 4.00
2003 2834 4.957296 AGTTATGAATACAGTTAGGCGGG 58.043 43.478 0.00 0.00 0.00 6.13
2004 2835 5.692204 CAGAGTTATGAATACAGTTAGGCGG 59.308 44.000 0.00 0.00 0.00 6.13
2020 2861 7.118825 CACACAAGTTCACATCATCAGAGTTAT 59.881 37.037 0.00 0.00 0.00 1.89
2068 2909 9.403583 GTGTAGGTTGGGATTATTGAGAAAATA 57.596 33.333 0.00 0.00 0.00 1.40
2073 2914 5.964477 AGAGTGTAGGTTGGGATTATTGAGA 59.036 40.000 0.00 0.00 0.00 3.27
2103 3275 6.018425 ACAGATGAATCGATGTCATAAACTGC 60.018 38.462 21.40 12.19 35.84 4.40
2161 3438 1.705337 CTTGGACCAGTATTGCGCCG 61.705 60.000 4.18 0.00 0.00 6.46
2383 3784 3.696051 GCCCAGCTGAACTTATCATGAAA 59.304 43.478 17.39 0.00 37.44 2.69
2429 3833 1.279846 TGGAGACATGATCAGCAGCAA 59.720 47.619 0.00 0.00 33.40 3.91
2452 3864 5.086104 TCTGAGCCCTTACAACAATAGTC 57.914 43.478 0.00 0.00 0.00 2.59
2453 3865 4.080863 CCTCTGAGCCCTTACAACAATAGT 60.081 45.833 0.00 0.00 0.00 2.12
2479 3904 0.569810 CTTCTCGCTGCTTCGATTCG 59.430 55.000 0.00 0.00 37.87 3.34
2542 3967 3.127533 GAATCCTGCTGCGCCGTT 61.128 61.111 4.18 0.00 0.00 4.44
2545 3970 2.124983 TCTGAATCCTGCTGCGCC 60.125 61.111 4.18 0.00 0.00 6.53
2560 3985 0.967887 TGCTAGAGCTGGCGTTCTCT 60.968 55.000 2.72 7.84 40.17 3.10
2601 4026 0.456221 GTCCGACGACATGTCCTGAT 59.544 55.000 20.03 3.34 45.23 2.90
2711 4155 0.753479 ATGTTGTTCACCGTGGCCAA 60.753 50.000 7.24 0.00 0.00 4.52
2788 4235 3.390639 AGAAGTTCCAGATGCTCCATAGG 59.609 47.826 0.00 0.00 0.00 2.57
2864 4311 0.324091 ATGAAGAAAGGCCTGCCCAG 60.324 55.000 5.69 0.00 36.58 4.45
2944 4392 2.883468 CGAGCCGACGTAGAGCGAT 61.883 63.158 0.00 0.00 44.77 4.58
2975 4423 0.317160 CACTGAGACCCGTAGCACAA 59.683 55.000 0.00 0.00 0.00 3.33
3025 4473 2.093711 GCCAAAATGGTTTAGCCCGAAT 60.094 45.455 0.00 0.00 40.46 3.34
3043 4491 0.888736 CCGTGTTGAAGATGGTGCCA 60.889 55.000 0.00 0.00 0.00 4.92
3202 4651 0.387367 CAGACCCGAAGACACAGACG 60.387 60.000 0.00 0.00 0.00 4.18
3265 4721 2.300152 CAGTCTGGCATATATGACCCGT 59.700 50.000 16.15 0.00 33.92 5.28
3271 4727 2.570752 AGGGAGCAGTCTGGCATATATG 59.429 50.000 8.45 8.45 35.83 1.78
3277 4733 0.538057 CAAAAGGGAGCAGTCTGGCA 60.538 55.000 1.14 0.00 35.83 4.92
3354 4810 9.189156 ACCAAATGCTAACATGATATTGTTACT 57.811 29.630 0.00 0.00 40.25 2.24
3399 4855 6.683974 AGTGACCATTGTATTGTTGCTATC 57.316 37.500 0.00 0.00 0.00 2.08
3404 4860 5.241506 ACAGGAAGTGACCATTGTATTGTTG 59.758 40.000 0.00 0.00 0.00 3.33
3497 4968 4.965532 AGGGAGTATGTATCACTCAGCTTT 59.034 41.667 5.00 0.00 43.50 3.51
3536 5007 4.002906 ACTTTGGTGATCTAAACGCTCA 57.997 40.909 0.00 0.00 0.00 4.26
3548 5019 9.256228 AGAGTATTTAGATCACTACTTTGGTGA 57.744 33.333 0.00 0.00 45.84 4.02
3549 5020 9.877178 AAGAGTATTTAGATCACTACTTTGGTG 57.123 33.333 0.00 0.00 36.17 4.17
3580 5051 9.198475 CCTGTAAAGTACTCCCTCTATAAAGAA 57.802 37.037 0.00 0.00 0.00 2.52
3581 5052 8.563502 TCCTGTAAAGTACTCCCTCTATAAAGA 58.436 37.037 0.00 0.00 0.00 2.52
3582 5053 8.763984 TCCTGTAAAGTACTCCCTCTATAAAG 57.236 38.462 0.00 0.00 0.00 1.85
3583 5054 8.342270 ACTCCTGTAAAGTACTCCCTCTATAAA 58.658 37.037 0.00 0.00 0.00 1.40
3584 5055 7.880623 ACTCCTGTAAAGTACTCCCTCTATAA 58.119 38.462 0.00 0.00 0.00 0.98
3585 5056 7.463054 ACTCCTGTAAAGTACTCCCTCTATA 57.537 40.000 0.00 0.00 0.00 1.31
3586 5057 6.344232 ACTCCTGTAAAGTACTCCCTCTAT 57.656 41.667 0.00 0.00 0.00 1.98
3587 5058 5.793034 ACTCCTGTAAAGTACTCCCTCTA 57.207 43.478 0.00 0.00 0.00 2.43
3588 5059 4.678538 ACTCCTGTAAAGTACTCCCTCT 57.321 45.455 0.00 0.00 0.00 3.69
3589 5060 4.527427 ACAACTCCTGTAAAGTACTCCCTC 59.473 45.833 0.00 0.00 36.10 4.30
3590 5061 4.283722 CACAACTCCTGTAAAGTACTCCCT 59.716 45.833 0.00 0.00 36.10 4.20
3591 5062 4.566987 CACAACTCCTGTAAAGTACTCCC 58.433 47.826 0.00 0.00 36.10 4.30
3592 5063 3.995048 GCACAACTCCTGTAAAGTACTCC 59.005 47.826 0.00 0.00 36.10 3.85
3593 5064 4.884247 AGCACAACTCCTGTAAAGTACTC 58.116 43.478 0.00 0.00 36.10 2.59
3594 5065 4.884247 GAGCACAACTCCTGTAAAGTACT 58.116 43.478 0.00 0.00 39.75 2.73
3614 5085 5.817296 TGCTAACATGGTATTGCTGTAAGAG 59.183 40.000 0.00 0.00 34.07 2.85
3622 5093 7.687941 ATACCTAATGCTAACATGGTATTGC 57.312 36.000 0.00 0.00 40.25 3.56
3636 5107 3.244112 ACGGAGGCTACAATACCTAATGC 60.244 47.826 0.00 0.00 36.05 3.56
3641 5112 1.411041 GGACGGAGGCTACAATACCT 58.589 55.000 0.00 0.00 39.65 3.08
3651 5122 1.743394 CACTTATTTTGGGACGGAGGC 59.257 52.381 0.00 0.00 0.00 4.70
3653 5124 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3654 5125 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
3655 5126 3.190535 CCAAGACACTTATTTTGGGACGG 59.809 47.826 0.00 0.00 37.11 4.79
3656 5127 3.818773 ACCAAGACACTTATTTTGGGACG 59.181 43.478 7.00 0.00 43.38 4.79
3657 5128 5.784578 AACCAAGACACTTATTTTGGGAC 57.215 39.130 7.00 0.00 43.38 4.46
3658 5129 6.800072 AAAACCAAGACACTTATTTTGGGA 57.200 33.333 7.00 0.00 43.38 4.37
3659 5130 7.722363 ACTAAAACCAAGACACTTATTTTGGG 58.278 34.615 7.00 0.00 43.38 4.12
3660 5131 9.244799 GAACTAAAACCAAGACACTTATTTTGG 57.755 33.333 0.00 0.00 44.38 3.28
3661 5132 9.796120 TGAACTAAAACCAAGACACTTATTTTG 57.204 29.630 0.00 0.00 0.00 2.44
3667 5138 9.150348 CAAATTTGAACTAAAACCAAGACACTT 57.850 29.630 13.08 0.00 0.00 3.16
3668 5139 8.527810 TCAAATTTGAACTAAAACCAAGACACT 58.472 29.630 18.45 0.00 33.55 3.55
3669 5140 8.696410 TCAAATTTGAACTAAAACCAAGACAC 57.304 30.769 18.45 0.00 33.55 3.67
3684 5155 7.009723 GTGAAGCGGTTTTAGTTCAAATTTGAA 59.990 33.333 26.01 26.01 44.31 2.69
3685 5156 6.474102 GTGAAGCGGTTTTAGTTCAAATTTGA 59.526 34.615 16.91 16.91 30.94 2.69
3686 5157 6.475402 AGTGAAGCGGTTTTAGTTCAAATTTG 59.525 34.615 12.15 12.15 30.94 2.32
3687 5158 6.569780 AGTGAAGCGGTTTTAGTTCAAATTT 58.430 32.000 0.00 0.00 30.94 1.82
3688 5159 6.144078 AGTGAAGCGGTTTTAGTTCAAATT 57.856 33.333 0.00 0.00 30.94 1.82
3689 5160 5.767816 AGTGAAGCGGTTTTAGTTCAAAT 57.232 34.783 0.00 0.00 30.94 2.32
3690 5161 5.570234 AAGTGAAGCGGTTTTAGTTCAAA 57.430 34.783 0.00 0.00 30.94 2.69
3691 5162 6.870971 ATAAGTGAAGCGGTTTTAGTTCAA 57.129 33.333 0.00 0.00 30.94 2.69
3692 5163 6.870971 AATAAGTGAAGCGGTTTTAGTTCA 57.129 33.333 0.00 0.00 0.00 3.18
3693 5164 7.114388 CCAAAATAAGTGAAGCGGTTTTAGTTC 59.886 37.037 0.00 0.00 0.00 3.01
3694 5165 6.921307 CCAAAATAAGTGAAGCGGTTTTAGTT 59.079 34.615 0.00 6.13 0.00 2.24
3695 5166 6.443792 CCAAAATAAGTGAAGCGGTTTTAGT 58.556 36.000 0.00 0.00 0.00 2.24
3696 5167 5.861787 CCCAAAATAAGTGAAGCGGTTTTAG 59.138 40.000 0.00 0.00 0.00 1.85
3697 5168 5.535406 TCCCAAAATAAGTGAAGCGGTTTTA 59.465 36.000 0.00 0.00 0.00 1.52
3698 5169 4.342665 TCCCAAAATAAGTGAAGCGGTTTT 59.657 37.500 0.00 0.00 0.00 2.43
3699 5170 3.892588 TCCCAAAATAAGTGAAGCGGTTT 59.107 39.130 0.00 0.00 0.00 3.27
3700 5171 3.254903 GTCCCAAAATAAGTGAAGCGGTT 59.745 43.478 0.00 0.00 0.00 4.44
3701 5172 2.817844 GTCCCAAAATAAGTGAAGCGGT 59.182 45.455 0.00 0.00 0.00 5.68
3702 5173 2.159572 CGTCCCAAAATAAGTGAAGCGG 60.160 50.000 0.00 0.00 0.00 5.52
3703 5174 2.159572 CCGTCCCAAAATAAGTGAAGCG 60.160 50.000 0.00 0.00 0.00 4.68
3704 5175 3.078837 TCCGTCCCAAAATAAGTGAAGC 58.921 45.455 0.00 0.00 0.00 3.86
3705 5176 3.689649 CCTCCGTCCCAAAATAAGTGAAG 59.310 47.826 0.00 0.00 0.00 3.02
3706 5177 3.073356 ACCTCCGTCCCAAAATAAGTGAA 59.927 43.478 0.00 0.00 0.00 3.18
3707 5178 2.640826 ACCTCCGTCCCAAAATAAGTGA 59.359 45.455 0.00 0.00 0.00 3.41
3708 5179 3.067684 ACCTCCGTCCCAAAATAAGTG 57.932 47.619 0.00 0.00 0.00 3.16
3709 5180 5.446260 AATACCTCCGTCCCAAAATAAGT 57.554 39.130 0.00 0.00 0.00 2.24
3712 5183 8.480501 GCTATATAATACCTCCGTCCCAAAATA 58.519 37.037 0.00 0.00 0.00 1.40
3713 5184 7.037873 TGCTATATAATACCTCCGTCCCAAAAT 60.038 37.037 0.00 0.00 0.00 1.82
3714 5185 6.270463 TGCTATATAATACCTCCGTCCCAAAA 59.730 38.462 0.00 0.00 0.00 2.44
3715 5186 5.781306 TGCTATATAATACCTCCGTCCCAAA 59.219 40.000 0.00 0.00 0.00 3.28
3716 5187 5.335261 TGCTATATAATACCTCCGTCCCAA 58.665 41.667 0.00 0.00 0.00 4.12
3717 5188 4.938028 TGCTATATAATACCTCCGTCCCA 58.062 43.478 0.00 0.00 0.00 4.37
3718 5189 5.186409 TGTTGCTATATAATACCTCCGTCCC 59.814 44.000 0.00 0.00 0.00 4.46
3719 5190 6.276832 TGTTGCTATATAATACCTCCGTCC 57.723 41.667 0.00 0.00 0.00 4.79
3734 5205 9.918630 GAGAAATTGCCATTATAATGTTGCTAT 57.081 29.630 21.20 16.95 34.60 2.97
3866 5345 5.745312 ACAGGATCAGAGTGAACATGTAA 57.255 39.130 0.00 0.00 41.21 2.41
3867 5346 6.437477 AGTTACAGGATCAGAGTGAACATGTA 59.563 38.462 0.00 7.38 41.21 2.29
3873 5356 6.486056 AGTAGAGTTACAGGATCAGAGTGAA 58.514 40.000 0.00 0.00 31.96 3.18
3882 5365 3.946558 GGTGACGAGTAGAGTTACAGGAT 59.053 47.826 0.00 0.00 30.84 3.24
3898 5381 2.932614 GGAGACATCAATCAAGGTGACG 59.067 50.000 0.00 0.00 0.00 4.35
3908 5391 2.420129 GGTAGCCAACGGAGACATCAAT 60.420 50.000 0.00 0.00 0.00 2.57
3920 5406 3.821033 ACAAAACATCAGAGGTAGCCAAC 59.179 43.478 0.00 0.00 0.00 3.77
3927 5413 3.498661 GGGAAGGACAAAACATCAGAGGT 60.499 47.826 0.00 0.00 0.00 3.85
4041 5539 4.785453 GGCCAAGGAGGACGCAGG 62.785 72.222 0.00 0.00 41.22 4.85
4107 5605 4.219070 TGATGCCATGTCCAAGAAGAAAAG 59.781 41.667 0.00 0.00 0.00 2.27
4207 5706 4.253685 CCAAGAACTACATGGACATCGTT 58.746 43.478 0.00 0.00 39.44 3.85
4212 5711 3.557054 GCTCACCAAGAACTACATGGACA 60.557 47.826 0.00 0.00 39.44 4.02
4230 5729 3.240134 GAGGGCTTCACGGTGCTCA 62.240 63.158 2.51 0.00 30.90 4.26
4238 5737 2.095252 GTCGCTTCGAGGGCTTCAC 61.095 63.158 10.00 2.18 36.23 3.18
4270 5769 1.408683 GGCAGGATGGACAAGCACATA 60.409 52.381 0.00 0.00 35.86 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.