Multiple sequence alignment - TraesCS5A01G002600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G002600 | chr5A | 100.000 | 4838 | 0 | 0 | 1 | 4838 | 2109603 | 2114440 | 0.000000e+00 | 8935.0 |
1 | TraesCS5A01G002600 | chr5D | 95.504 | 3247 | 120 | 17 | 346 | 3578 | 2671888 | 2668654 | 0.000000e+00 | 5164.0 |
2 | TraesCS5A01G002600 | chr5D | 91.508 | 577 | 31 | 7 | 3572 | 4130 | 2668525 | 2667949 | 0.000000e+00 | 778.0 |
3 | TraesCS5A01G002600 | chr5D | 89.591 | 269 | 14 | 4 | 43 | 306 | 2672119 | 2671860 | 3.610000e-86 | 329.0 |
4 | TraesCS5A01G002600 | chr5B | 93.182 | 1760 | 80 | 16 | 210 | 1929 | 2563407 | 2561648 | 0.000000e+00 | 2549.0 |
5 | TraesCS5A01G002600 | chr5B | 90.468 | 1794 | 107 | 21 | 2527 | 4270 | 2560677 | 2558898 | 0.000000e+00 | 2307.0 |
6 | TraesCS5A01G002600 | chr5B | 87.067 | 982 | 108 | 5 | 951 | 1929 | 686469917 | 686470882 | 0.000000e+00 | 1092.0 |
7 | TraesCS5A01G002600 | chr5B | 90.106 | 566 | 37 | 6 | 4286 | 4838 | 4541504 | 4542063 | 0.000000e+00 | 717.0 |
8 | TraesCS5A01G002600 | chr5B | 81.236 | 453 | 53 | 23 | 4407 | 4838 | 2558553 | 2558112 | 2.160000e-88 | 337.0 |
9 | TraesCS5A01G002600 | chr3B | 92.431 | 1057 | 67 | 7 | 882 | 1928 | 720834180 | 720833127 | 0.000000e+00 | 1496.0 |
10 | TraesCS5A01G002600 | chr3B | 92.836 | 335 | 23 | 1 | 364 | 697 | 720853945 | 720853611 | 7.280000e-133 | 484.0 |
11 | TraesCS5A01G002600 | chr3B | 87.603 | 242 | 13 | 8 | 57 | 291 | 720857768 | 720857537 | 1.030000e-66 | 265.0 |
12 | TraesCS5A01G002600 | chr3B | 82.143 | 84 | 13 | 2 | 152 | 235 | 720858114 | 720858033 | 2.420000e-08 | 71.3 |
13 | TraesCS5A01G002600 | chr4A | 86.165 | 983 | 111 | 9 | 950 | 1929 | 624121222 | 624122182 | 0.000000e+00 | 1038.0 |
14 | TraesCS5A01G002600 | chr4A | 82.088 | 910 | 161 | 2 | 1001 | 1909 | 584272892 | 584273800 | 0.000000e+00 | 776.0 |
15 | TraesCS5A01G002600 | chr4A | 79.673 | 733 | 135 | 13 | 2571 | 3300 | 584274104 | 584274825 | 2.580000e-142 | 516.0 |
16 | TraesCS5A01G002600 | chr4D | 79.048 | 735 | 140 | 13 | 2571 | 3300 | 16233810 | 16233085 | 4.350000e-135 | 492.0 |
17 | TraesCS5A01G002600 | chr4B | 78.940 | 736 | 139 | 15 | 2571 | 3300 | 28071523 | 28070798 | 2.020000e-133 | 486.0 |
18 | TraesCS5A01G002600 | chr7D | 87.500 | 48 | 5 | 1 | 1638 | 1685 | 78172513 | 78172467 | 2.000000e-03 | 54.7 |
19 | TraesCS5A01G002600 | chr7B | 100.000 | 28 | 0 | 0 | 144 | 171 | 741338006 | 741338033 | 9.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G002600 | chr5A | 2109603 | 2114440 | 4837 | False | 8935.000000 | 8935 | 100.000000 | 1 | 4838 | 1 | chr5A.!!$F1 | 4837 |
1 | TraesCS5A01G002600 | chr5D | 2667949 | 2672119 | 4170 | True | 2090.333333 | 5164 | 92.201000 | 43 | 4130 | 3 | chr5D.!!$R1 | 4087 |
2 | TraesCS5A01G002600 | chr5B | 2558112 | 2563407 | 5295 | True | 1731.000000 | 2549 | 88.295333 | 210 | 4838 | 3 | chr5B.!!$R1 | 4628 |
3 | TraesCS5A01G002600 | chr5B | 686469917 | 686470882 | 965 | False | 1092.000000 | 1092 | 87.067000 | 951 | 1929 | 1 | chr5B.!!$F2 | 978 |
4 | TraesCS5A01G002600 | chr5B | 4541504 | 4542063 | 559 | False | 717.000000 | 717 | 90.106000 | 4286 | 4838 | 1 | chr5B.!!$F1 | 552 |
5 | TraesCS5A01G002600 | chr3B | 720833127 | 720834180 | 1053 | True | 1496.000000 | 1496 | 92.431000 | 882 | 1928 | 1 | chr3B.!!$R1 | 1046 |
6 | TraesCS5A01G002600 | chr3B | 720853611 | 720858114 | 4503 | True | 273.433333 | 484 | 87.527333 | 57 | 697 | 3 | chr3B.!!$R2 | 640 |
7 | TraesCS5A01G002600 | chr4A | 624121222 | 624122182 | 960 | False | 1038.000000 | 1038 | 86.165000 | 950 | 1929 | 1 | chr4A.!!$F1 | 979 |
8 | TraesCS5A01G002600 | chr4A | 584272892 | 584274825 | 1933 | False | 646.000000 | 776 | 80.880500 | 1001 | 3300 | 2 | chr4A.!!$F2 | 2299 |
9 | TraesCS5A01G002600 | chr4D | 16233085 | 16233810 | 725 | True | 492.000000 | 492 | 79.048000 | 2571 | 3300 | 1 | chr4D.!!$R1 | 729 |
10 | TraesCS5A01G002600 | chr4B | 28070798 | 28071523 | 725 | True | 486.000000 | 486 | 78.940000 | 2571 | 3300 | 1 | chr4B.!!$R1 | 729 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
784 | 4638 | 0.451783 | GGATGACACGTGCCCAAATC | 59.548 | 55.0 | 17.22 | 11.15 | 0.00 | 2.17 | F |
1674 | 5548 | 0.814010 | GTAGCAACCGGGCGATCATT | 60.814 | 55.0 | 6.32 | 0.00 | 39.27 | 2.57 | F |
2368 | 7061 | 0.250901 | CTGTTACCTGCAGTTGGCCT | 60.251 | 55.0 | 13.81 | 0.00 | 43.89 | 5.19 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2153 | 6840 | 4.155063 | TGCTAGTTCACCATGCATATGT | 57.845 | 40.909 | 0.0 | 0.0 | 32.21 | 2.29 | R |
3304 | 8004 | 0.027194 | CATGGAGTTTCTGCGATGCG | 59.973 | 55.000 | 0.0 | 0.0 | 0.00 | 4.73 | R |
4153 | 9015 | 0.108585 | GGTCTTCACTGGCTTGGACA | 59.891 | 55.000 | 0.0 | 0.0 | 0.00 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 2.627515 | ATTGCGCACTATGGATCTGT | 57.372 | 45.000 | 11.12 | 0.00 | 0.00 | 3.41 |
22 | 23 | 2.401583 | TGCGCACTATGGATCTGTTT | 57.598 | 45.000 | 5.66 | 0.00 | 0.00 | 2.83 |
24 | 25 | 2.009774 | GCGCACTATGGATCTGTTTGT | 58.990 | 47.619 | 0.30 | 0.00 | 0.00 | 2.83 |
25 | 26 | 3.194861 | GCGCACTATGGATCTGTTTGTA | 58.805 | 45.455 | 0.30 | 0.00 | 0.00 | 2.41 |
26 | 27 | 3.621268 | GCGCACTATGGATCTGTTTGTAA | 59.379 | 43.478 | 0.30 | 0.00 | 0.00 | 2.41 |
27 | 28 | 4.273480 | GCGCACTATGGATCTGTTTGTAAT | 59.727 | 41.667 | 0.30 | 0.00 | 0.00 | 1.89 |
28 | 29 | 5.741425 | CGCACTATGGATCTGTTTGTAATG | 58.259 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
29 | 30 | 5.514279 | GCACTATGGATCTGTTTGTAATGC | 58.486 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
30 | 31 | 5.297776 | GCACTATGGATCTGTTTGTAATGCT | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 3.79 |
32 | 33 | 7.012327 | GCACTATGGATCTGTTTGTAATGCTTA | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
33 | 34 | 8.554528 | CACTATGGATCTGTTTGTAATGCTTAG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
35 | 36 | 6.985188 | TGGATCTGTTTGTAATGCTTAGAC | 57.015 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
36 | 37 | 6.472016 | TGGATCTGTTTGTAATGCTTAGACA | 58.528 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
37 | 38 | 6.595326 | TGGATCTGTTTGTAATGCTTAGACAG | 59.405 | 38.462 | 0.00 | 0.00 | 35.55 | 3.51 |
38 | 39 | 6.595716 | GGATCTGTTTGTAATGCTTAGACAGT | 59.404 | 38.462 | 0.00 | 0.00 | 35.68 | 3.55 |
39 | 40 | 7.764443 | GGATCTGTTTGTAATGCTTAGACAGTA | 59.236 | 37.037 | 0.00 | 0.00 | 35.68 | 2.74 |
41 | 42 | 7.892609 | TCTGTTTGTAATGCTTAGACAGTAGA | 58.107 | 34.615 | 0.00 | 0.00 | 35.68 | 2.59 |
77 | 369 | 2.653726 | TCACATACAATGGATGCACCC | 58.346 | 47.619 | 5.16 | 0.00 | 38.00 | 4.61 |
78 | 370 | 1.334556 | CACATACAATGGATGCACCCG | 59.665 | 52.381 | 5.16 | 0.00 | 38.00 | 5.28 |
90 | 382 | 4.137543 | GGATGCACCCGAATTTATCTTCT | 58.862 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
92 | 384 | 4.487714 | TGCACCCGAATTTATCTTCTCT | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
118 | 411 | 7.045416 | TGTTGTTTTTCTCTGCTAGTTCAGTA | 58.955 | 34.615 | 0.00 | 0.00 | 35.63 | 2.74 |
145 | 438 | 9.899226 | GTTCTGCATTTTCTTACAATATATCCC | 57.101 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
146 | 439 | 8.635765 | TCTGCATTTTCTTACAATATATCCCC | 57.364 | 34.615 | 0.00 | 0.00 | 0.00 | 4.81 |
147 | 440 | 8.448008 | TCTGCATTTTCTTACAATATATCCCCT | 58.552 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
148 | 441 | 8.408043 | TGCATTTTCTTACAATATATCCCCTG | 57.592 | 34.615 | 0.00 | 0.00 | 0.00 | 4.45 |
149 | 442 | 7.039784 | TGCATTTTCTTACAATATATCCCCTGC | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
150 | 443 | 7.177392 | GCATTTTCTTACAATATATCCCCTGCT | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 4.24 |
199 | 496 | 1.555075 | TGGTTTAGGTCTGGCAGCTAG | 59.445 | 52.381 | 10.34 | 0.00 | 36.44 | 3.42 |
202 | 505 | 0.691078 | TTAGGTCTGGCAGCTAGGGG | 60.691 | 60.000 | 10.34 | 0.00 | 36.44 | 4.79 |
275 | 582 | 2.672195 | GCTGCGCTTTTGCCTAAGATTT | 60.672 | 45.455 | 9.73 | 0.00 | 43.93 | 2.17 |
330 | 1859 | 8.848474 | TTGTTAATTAGGAATAGCATAGCTCC | 57.152 | 34.615 | 0.00 | 0.00 | 40.44 | 4.70 |
336 | 1865 | 3.173965 | GGAATAGCATAGCTCCACCCTA | 58.826 | 50.000 | 0.00 | 0.00 | 40.44 | 3.53 |
632 | 4485 | 9.725019 | TCATGACATAATTAGTTTGAGAACAGT | 57.275 | 29.630 | 0.00 | 0.00 | 38.26 | 3.55 |
723 | 4577 | 8.807118 | AGATAATTAGATTTCTACATCTCCGCA | 58.193 | 33.333 | 0.00 | 0.00 | 35.08 | 5.69 |
759 | 4613 | 7.735326 | ACAATACAGATACCTATCCCATACC | 57.265 | 40.000 | 0.00 | 0.00 | 33.17 | 2.73 |
784 | 4638 | 0.451783 | GGATGACACGTGCCCAAATC | 59.548 | 55.000 | 17.22 | 11.15 | 0.00 | 2.17 |
862 | 4716 | 6.322931 | TCATCACATACTATGGATGTACCCT | 58.677 | 40.000 | 17.93 | 0.00 | 38.25 | 4.34 |
903 | 4760 | 4.035558 | TGTTGTTCTGACACTTCATCAAGC | 59.964 | 41.667 | 0.00 | 0.00 | 34.98 | 4.01 |
918 | 4777 | 6.889301 | TCATCAAGCTGTTTCTCTGATTTT | 57.111 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1266 | 5137 | 2.230940 | CGCCATCGTCATGACCGTC | 61.231 | 63.158 | 20.03 | 4.51 | 30.57 | 4.79 |
1314 | 5185 | 4.221422 | GCGACCGCCCTCATGCTA | 62.221 | 66.667 | 2.55 | 0.00 | 34.56 | 3.49 |
1566 | 5440 | 2.579201 | CCATCACGGAGCGGTTCT | 59.421 | 61.111 | 0.00 | 0.00 | 36.56 | 3.01 |
1674 | 5548 | 0.814010 | GTAGCAACCGGGCGATCATT | 60.814 | 55.000 | 6.32 | 0.00 | 39.27 | 2.57 |
1869 | 5743 | 1.353103 | CGCGAGGAAATGGCATGTC | 59.647 | 57.895 | 9.27 | 9.27 | 31.94 | 3.06 |
1948 | 6558 | 8.080417 | CCCTGATGCTATATTGTTCATTTCTTG | 58.920 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1949 | 6559 | 8.627403 | CCTGATGCTATATTGTTCATTTCTTGT | 58.373 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2001 | 6615 | 6.757897 | TGTTCTGATGGACATAAATCAACC | 57.242 | 37.500 | 0.00 | 0.00 | 32.60 | 3.77 |
2005 | 6619 | 6.962182 | TCTGATGGACATAAATCAACCTTCT | 58.038 | 36.000 | 0.00 | 0.00 | 32.60 | 2.85 |
2010 | 6624 | 5.939883 | TGGACATAAATCAACCTTCTCTGTG | 59.060 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2087 | 6774 | 4.744570 | CAGAAATTTCTCATGTGCTGCAT | 58.255 | 39.130 | 17.91 | 0.00 | 34.97 | 3.96 |
2096 | 6783 | 2.425668 | TCATGTGCTGCATTCCATTCTG | 59.574 | 45.455 | 5.27 | 0.00 | 35.19 | 3.02 |
2182 | 6869 | 4.034510 | GCATGGTGAACTAGCATTCTACAC | 59.965 | 45.833 | 0.00 | 0.00 | 44.75 | 2.90 |
2284 | 6973 | 9.462606 | TCTCTGTAGTTTTCTTTTCTTTCCTTT | 57.537 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
2368 | 7061 | 0.250901 | CTGTTACCTGCAGTTGGCCT | 60.251 | 55.000 | 13.81 | 0.00 | 43.89 | 5.19 |
2390 | 7083 | 5.455056 | TTTAAATGAAGCTGGGCGTTAAA | 57.545 | 34.783 | 0.00 | 0.00 | 0.00 | 1.52 |
2818 | 7512 | 1.024579 | AGCGCCTAATGGTGGAAACG | 61.025 | 55.000 | 2.29 | 0.00 | 43.74 | 3.60 |
2822 | 7516 | 0.808755 | CCTAATGGTGGAAACGGTGC | 59.191 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2827 | 7521 | 0.817634 | TGGTGGAAACGGTGCTGAAG | 60.818 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2962 | 7656 | 9.783256 | AAAGAGGTTTGTACAAAAATATATCGC | 57.217 | 29.630 | 22.14 | 6.90 | 31.33 | 4.58 |
2963 | 7657 | 7.927048 | AGAGGTTTGTACAAAAATATATCGCC | 58.073 | 34.615 | 22.14 | 14.99 | 31.33 | 5.54 |
2967 | 7661 | 6.870971 | TTGTACAAAAATATATCGCCCTCC | 57.129 | 37.500 | 5.64 | 0.00 | 0.00 | 4.30 |
2981 | 7676 | 1.137697 | CCCTCCCCACCTAATACCAC | 58.862 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3013 | 7709 | 7.047891 | TGCATATTACTCTAACCTGAACTTGG | 58.952 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
3103 | 7803 | 1.668826 | TGTTATCCCCTGACTTGCCT | 58.331 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
3200 | 7900 | 2.364842 | AGGGCCACATCTCGCTCT | 60.365 | 61.111 | 6.18 | 0.00 | 0.00 | 4.09 |
3308 | 8008 | 6.653320 | TGTAAAAGTTCAGGTAAAGATCGCAT | 59.347 | 34.615 | 0.00 | 0.00 | 0.00 | 4.73 |
3343 | 8043 | 8.327941 | TCCATGCTCTAATCAATGTATTAAGC | 57.672 | 34.615 | 0.00 | 0.00 | 32.31 | 3.09 |
3358 | 8062 | 1.358725 | TAAGCGAGAATGGCACGTGC | 61.359 | 55.000 | 32.15 | 32.15 | 44.88 | 5.34 |
3545 | 8249 | 3.206150 | CCAATGTCCTAACAGATTCCCG | 58.794 | 50.000 | 0.00 | 0.00 | 39.20 | 5.14 |
3548 | 8252 | 0.831307 | GTCCTAACAGATTCCCGGCT | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
3599 | 8438 | 6.929606 | ACATAGTGACTTAGAAACACCTGAAC | 59.070 | 38.462 | 0.00 | 0.00 | 35.47 | 3.18 |
3654 | 8493 | 4.247380 | CTGGAGAGCGATGGGGCC | 62.247 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
3699 | 8538 | 3.971702 | GTGAAGCTGGGGGCCTGT | 61.972 | 66.667 | 0.84 | 0.00 | 43.05 | 4.00 |
3846 | 8685 | 8.907829 | ACCAGAGGAGTATATGACATGATAAT | 57.092 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
3848 | 8687 | 8.975295 | CCAGAGGAGTATATGACATGATAATCA | 58.025 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3859 | 8698 | 6.118852 | TGACATGATAATCAAAACCGATGGA | 58.881 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3864 | 8703 | 7.822161 | TGATAATCAAAACCGATGGATCATT | 57.178 | 32.000 | 0.00 | 0.00 | 29.82 | 2.57 |
3902 | 8747 | 2.113777 | GGGGGAGGTAGGAGATGGAATA | 59.886 | 54.545 | 0.00 | 0.00 | 0.00 | 1.75 |
4010 | 8867 | 0.541392 | CATGGCAGCAGTAGGGTACA | 59.459 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4020 | 8877 | 3.674997 | CAGTAGGGTACAGTTGTTGCAT | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
4046 | 8903 | 1.092348 | GATGATTCTGCTGCAGTGCA | 58.908 | 50.000 | 27.24 | 18.58 | 41.05 | 4.57 |
4112 | 8974 | 1.143620 | GCAAAGCACCAGCAACCAA | 59.856 | 52.632 | 0.00 | 0.00 | 45.49 | 3.67 |
4120 | 8982 | 2.161609 | GCACCAGCAACCAATGTAGTAC | 59.838 | 50.000 | 0.00 | 0.00 | 41.58 | 2.73 |
4124 | 8986 | 5.645929 | CACCAGCAACCAATGTAGTACATTA | 59.354 | 40.000 | 24.54 | 0.00 | 46.22 | 1.90 |
4130 | 8992 | 6.038161 | GCAACCAATGTAGTACATTATGCAGA | 59.962 | 38.462 | 31.19 | 5.19 | 46.22 | 4.26 |
4131 | 8993 | 7.633621 | CAACCAATGTAGTACATTATGCAGAG | 58.366 | 38.462 | 24.54 | 12.55 | 46.22 | 3.35 |
4132 | 8994 | 6.889198 | ACCAATGTAGTACATTATGCAGAGT | 58.111 | 36.000 | 24.54 | 12.36 | 46.22 | 3.24 |
4133 | 8995 | 7.338710 | ACCAATGTAGTACATTATGCAGAGTT | 58.661 | 34.615 | 24.54 | 0.94 | 46.22 | 3.01 |
4135 | 8997 | 7.712639 | CCAATGTAGTACATTATGCAGAGTTCT | 59.287 | 37.037 | 24.54 | 0.00 | 46.22 | 3.01 |
4136 | 8998 | 9.102757 | CAATGTAGTACATTATGCAGAGTTCTT | 57.897 | 33.333 | 24.54 | 0.00 | 46.22 | 2.52 |
4137 | 8999 | 9.672673 | AATGTAGTACATTATGCAGAGTTCTTT | 57.327 | 29.630 | 23.95 | 0.00 | 46.11 | 2.52 |
4138 | 9000 | 8.703604 | TGTAGTACATTATGCAGAGTTCTTTC | 57.296 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
4139 | 9001 | 7.764443 | TGTAGTACATTATGCAGAGTTCTTTCC | 59.236 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
4140 | 9002 | 6.711277 | AGTACATTATGCAGAGTTCTTTCCA | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4141 | 9003 | 6.820656 | AGTACATTATGCAGAGTTCTTTCCAG | 59.179 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
4142 | 9004 | 4.946157 | ACATTATGCAGAGTTCTTTCCAGG | 59.054 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
4144 | 9006 | 5.441718 | TTATGCAGAGTTCTTTCCAGGAT | 57.558 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
4145 | 9007 | 3.795688 | TGCAGAGTTCTTTCCAGGATT | 57.204 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
4146 | 9008 | 4.104383 | TGCAGAGTTCTTTCCAGGATTT | 57.896 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
4148 | 9010 | 3.823304 | GCAGAGTTCTTTCCAGGATTTGT | 59.177 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4149 | 9011 | 4.320788 | GCAGAGTTCTTTCCAGGATTTGTG | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.33 |
4151 | 9013 | 5.532406 | CAGAGTTCTTTCCAGGATTTGTGAA | 59.468 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4152 | 9014 | 6.208204 | CAGAGTTCTTTCCAGGATTTGTGAAT | 59.792 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
4153 | 9015 | 6.779539 | AGAGTTCTTTCCAGGATTTGTGAATT | 59.220 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
4154 | 9016 | 6.752168 | AGTTCTTTCCAGGATTTGTGAATTG | 58.248 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4155 | 9017 | 6.324770 | AGTTCTTTCCAGGATTTGTGAATTGT | 59.675 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
4156 | 9018 | 6.331369 | TCTTTCCAGGATTTGTGAATTGTC | 57.669 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
4157 | 9019 | 5.243730 | TCTTTCCAGGATTTGTGAATTGTCC | 59.756 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4160 | 9022 | 4.523943 | TCCAGGATTTGTGAATTGTCCAAG | 59.476 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
4161 | 9023 | 4.240096 | CAGGATTTGTGAATTGTCCAAGC | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
4164 | 9045 | 3.731652 | TTTGTGAATTGTCCAAGCCAG | 57.268 | 42.857 | 0.00 | 0.00 | 0.00 | 4.85 |
4171 | 9052 | 1.967319 | TTGTCCAAGCCAGTGAAGAC | 58.033 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4180 | 9061 | 1.815408 | GCCAGTGAAGACCTCTTGCAA | 60.815 | 52.381 | 0.00 | 0.00 | 36.11 | 4.08 |
4186 | 9067 | 3.569701 | GTGAAGACCTCTTGCAATTTGGA | 59.430 | 43.478 | 16.19 | 3.24 | 36.11 | 3.53 |
4189 | 9070 | 3.359950 | AGACCTCTTGCAATTTGGATCC | 58.640 | 45.455 | 16.19 | 4.20 | 0.00 | 3.36 |
4201 | 9082 | 2.781681 | TTGGATCCCTCGGTTTCTTC | 57.218 | 50.000 | 9.90 | 0.00 | 0.00 | 2.87 |
4202 | 9083 | 0.909623 | TGGATCCCTCGGTTTCTTCC | 59.090 | 55.000 | 9.90 | 0.00 | 0.00 | 3.46 |
4203 | 9084 | 0.909623 | GGATCCCTCGGTTTCTTCCA | 59.090 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4208 | 9089 | 4.644163 | TCCCTCGGTTTCTTCCATTTTA | 57.356 | 40.909 | 0.00 | 0.00 | 0.00 | 1.52 |
4213 | 9094 | 6.811665 | CCCTCGGTTTCTTCCATTTTATTTTC | 59.188 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
4215 | 9096 | 6.383415 | TCGGTTTCTTCCATTTTATTTTCCG | 58.617 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4216 | 9097 | 6.207025 | TCGGTTTCTTCCATTTTATTTTCCGA | 59.793 | 34.615 | 0.00 | 0.00 | 38.55 | 4.55 |
4217 | 9098 | 7.033185 | CGGTTTCTTCCATTTTATTTTCCGAT | 58.967 | 34.615 | 0.00 | 0.00 | 34.76 | 4.18 |
4218 | 9099 | 8.185505 | CGGTTTCTTCCATTTTATTTTCCGATA | 58.814 | 33.333 | 0.00 | 0.00 | 34.76 | 2.92 |
4251 | 9133 | 8.341173 | GGACTATTTTCTTGATGCATAACTCTG | 58.659 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
4265 | 9147 | 2.514205 | ACTCTGGCATTTGCAACAAC | 57.486 | 45.000 | 0.00 | 0.00 | 44.36 | 3.32 |
4270 | 9152 | 2.477375 | CTGGCATTTGCAACAACACATC | 59.523 | 45.455 | 0.00 | 0.00 | 44.36 | 3.06 |
4271 | 9153 | 2.159000 | TGGCATTTGCAACAACACATCA | 60.159 | 40.909 | 0.00 | 0.00 | 44.36 | 3.07 |
4272 | 9154 | 2.477375 | GGCATTTGCAACAACACATCAG | 59.523 | 45.455 | 0.00 | 0.00 | 44.36 | 2.90 |
4273 | 9155 | 2.096614 | GCATTTGCAACAACACATCAGC | 60.097 | 45.455 | 0.00 | 0.00 | 41.59 | 4.26 |
4274 | 9156 | 3.386486 | CATTTGCAACAACACATCAGCT | 58.614 | 40.909 | 0.00 | 0.00 | 0.00 | 4.24 |
4275 | 9157 | 2.495409 | TTGCAACAACACATCAGCTG | 57.505 | 45.000 | 7.63 | 7.63 | 0.00 | 4.24 |
4276 | 9158 | 1.391577 | TGCAACAACACATCAGCTGT | 58.608 | 45.000 | 14.67 | 0.00 | 39.20 | 4.40 |
4294 | 9176 | 3.462021 | CTGTGAGGCTAGGCAGAATAAC | 58.538 | 50.000 | 19.70 | 7.45 | 0.00 | 1.89 |
4321 | 9462 | 1.274728 | TGAAATGGGTCCAAATTGGCG | 59.725 | 47.619 | 7.24 | 0.00 | 37.47 | 5.69 |
4326 | 9467 | 1.069358 | TGGGTCCAAATTGGCGAAAAC | 59.931 | 47.619 | 7.24 | 0.00 | 37.47 | 2.43 |
4365 | 9506 | 4.223320 | TCCTTGAAAGTGAAAATCGCAC | 57.777 | 40.909 | 0.00 | 0.00 | 36.53 | 5.34 |
4371 | 9512 | 2.693797 | AGTGAAAATCGCACAAGCAG | 57.306 | 45.000 | 0.00 | 0.00 | 42.27 | 4.24 |
4372 | 9513 | 1.267806 | AGTGAAAATCGCACAAGCAGG | 59.732 | 47.619 | 0.00 | 0.00 | 42.27 | 4.85 |
4375 | 9516 | 1.000274 | GAAAATCGCACAAGCAGGGTT | 60.000 | 47.619 | 0.00 | 0.00 | 42.27 | 4.11 |
4376 | 9517 | 1.039856 | AAATCGCACAAGCAGGGTTT | 58.960 | 45.000 | 0.00 | 0.00 | 42.27 | 3.27 |
4402 | 9543 | 6.266103 | GGAAATATGAAGAATGCATTCTCCCA | 59.734 | 38.462 | 35.67 | 32.47 | 45.83 | 4.37 |
4404 | 9545 | 4.996788 | ATGAAGAATGCATTCTCCCAAC | 57.003 | 40.909 | 35.67 | 24.27 | 45.83 | 3.77 |
4415 | 9556 | 7.243604 | TGCATTCTCCCAACAAAAAGATAAT | 57.756 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
4550 | 9702 | 1.613836 | CAATGCCCTTATCTCTGGCC | 58.386 | 55.000 | 0.00 | 0.00 | 44.72 | 5.36 |
4583 | 9735 | 5.861251 | TCATTCACGCCAAATAAACAACATC | 59.139 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4584 | 9736 | 4.837896 | TCACGCCAAATAAACAACATCA | 57.162 | 36.364 | 0.00 | 0.00 | 0.00 | 3.07 |
4607 | 9759 | 1.696063 | AGCAGCCATGAACTGTTGTT | 58.304 | 45.000 | 14.70 | 0.00 | 37.47 | 2.83 |
4640 | 9805 | 7.089770 | TGAAGCACATGTACAAAGTAACAAA | 57.910 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4645 | 9810 | 6.196353 | GCACATGTACAAAGTAACAAACACAG | 59.804 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
4656 | 9821 | 1.768870 | ACAAACACAGTGGTAGCTCCT | 59.231 | 47.619 | 5.31 | 0.00 | 37.07 | 3.69 |
4751 | 9916 | 4.520492 | GGCTTCTTCAGATTTCAAAGGTGA | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
4800 | 9966 | 9.484806 | AGAAAGACAAAATAATCCAATCCATCT | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.751479 | ACAGATCCATAGTGCGCAATA | 57.249 | 42.857 | 20.84 | 20.84 | 0.00 | 1.90 |
1 | 2 | 2.627515 | ACAGATCCATAGTGCGCAAT | 57.372 | 45.000 | 17.03 | 17.03 | 0.00 | 3.56 |
2 | 3 | 2.401583 | AACAGATCCATAGTGCGCAA | 57.598 | 45.000 | 14.00 | 0.00 | 0.00 | 4.85 |
4 | 5 | 2.009774 | ACAAACAGATCCATAGTGCGC | 58.990 | 47.619 | 0.00 | 0.00 | 0.00 | 6.09 |
6 | 7 | 5.297776 | AGCATTACAAACAGATCCATAGTGC | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
7 | 8 | 6.932356 | AGCATTACAAACAGATCCATAGTG | 57.068 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
8 | 9 | 8.486210 | TCTAAGCATTACAAACAGATCCATAGT | 58.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
11 | 12 | 7.112122 | TGTCTAAGCATTACAAACAGATCCAT | 58.888 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
12 | 13 | 6.472016 | TGTCTAAGCATTACAAACAGATCCA | 58.528 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
13 | 14 | 6.595716 | ACTGTCTAAGCATTACAAACAGATCC | 59.404 | 38.462 | 6.61 | 0.00 | 0.00 | 3.36 |
15 | 16 | 8.531982 | TCTACTGTCTAAGCATTACAAACAGAT | 58.468 | 33.333 | 6.61 | 0.00 | 0.00 | 2.90 |
16 | 17 | 7.813148 | GTCTACTGTCTAAGCATTACAAACAGA | 59.187 | 37.037 | 6.61 | 0.00 | 0.00 | 3.41 |
17 | 18 | 7.598869 | TGTCTACTGTCTAAGCATTACAAACAG | 59.401 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
18 | 19 | 7.384115 | GTGTCTACTGTCTAAGCATTACAAACA | 59.616 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
19 | 20 | 7.148623 | GGTGTCTACTGTCTAAGCATTACAAAC | 60.149 | 40.741 | 0.00 | 0.00 | 0.00 | 2.93 |
20 | 21 | 6.872020 | GGTGTCTACTGTCTAAGCATTACAAA | 59.128 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
22 | 23 | 5.105473 | GGGTGTCTACTGTCTAAGCATTACA | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 2.41 |
24 | 25 | 5.020795 | TGGGTGTCTACTGTCTAAGCATTA | 58.979 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
25 | 26 | 3.838317 | TGGGTGTCTACTGTCTAAGCATT | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
26 | 27 | 3.441101 | TGGGTGTCTACTGTCTAAGCAT | 58.559 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
27 | 28 | 2.884320 | TGGGTGTCTACTGTCTAAGCA | 58.116 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
28 | 29 | 3.851098 | CTTGGGTGTCTACTGTCTAAGC | 58.149 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
29 | 30 | 3.258372 | TGCTTGGGTGTCTACTGTCTAAG | 59.742 | 47.826 | 0.00 | 0.00 | 0.00 | 2.18 |
30 | 31 | 3.236047 | TGCTTGGGTGTCTACTGTCTAA | 58.764 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
32 | 33 | 1.717032 | TGCTTGGGTGTCTACTGTCT | 58.283 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
33 | 34 | 2.770164 | ATGCTTGGGTGTCTACTGTC | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
35 | 36 | 2.236146 | TGGTATGCTTGGGTGTCTACTG | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
36 | 37 | 2.546899 | TGGTATGCTTGGGTGTCTACT | 58.453 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
37 | 38 | 3.118408 | TGATGGTATGCTTGGGTGTCTAC | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
38 | 39 | 3.111484 | TGATGGTATGCTTGGGTGTCTA | 58.889 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
39 | 40 | 1.915489 | TGATGGTATGCTTGGGTGTCT | 59.085 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
41 | 42 | 1.354031 | TGTGATGGTATGCTTGGGTGT | 59.646 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
90 | 382 | 6.597672 | TGAACTAGCAGAGAAAAACAACAAGA | 59.402 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
92 | 384 | 6.374333 | ACTGAACTAGCAGAGAAAAACAACAA | 59.626 | 34.615 | 4.57 | 0.00 | 39.20 | 2.83 |
164 | 457 | 1.920734 | AACCATGGCCGATGCAGGTA | 61.921 | 55.000 | 13.04 | 0.00 | 37.59 | 3.08 |
199 | 496 | 1.282447 | GGAAAGGAAAGGAGAGACCCC | 59.718 | 57.143 | 0.00 | 0.00 | 40.05 | 4.95 |
202 | 505 | 2.640332 | ACAGGGAAAGGAAAGGAGAGAC | 59.360 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
264 | 571 | 1.283029 | AGAGCAGGCAAATCTTAGGCA | 59.717 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
275 | 582 | 0.675837 | CAAGCTTAGCAGAGCAGGCA | 60.676 | 55.000 | 7.07 | 0.00 | 45.12 | 4.75 |
330 | 1859 | 1.383248 | CAGGGAGGGAGGTAGGGTG | 60.383 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
459 | 4305 | 8.572884 | TCCACTTATCTAAGTAGTCTAGGGTA | 57.427 | 38.462 | 2.43 | 0.00 | 44.19 | 3.69 |
723 | 4577 | 8.540388 | AGGTATCTGTATTGTTACACATTGAGT | 58.460 | 33.333 | 0.00 | 0.00 | 34.62 | 3.41 |
759 | 4613 | 1.290203 | GGCACGTGTCATCCATAGTG | 58.710 | 55.000 | 16.80 | 0.00 | 37.51 | 2.74 |
889 | 4746 | 4.754114 | AGAGAAACAGCTTGATGAAGTGTC | 59.246 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
903 | 4760 | 6.420008 | CCTGCAAAGAAAAATCAGAGAAACAG | 59.580 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
918 | 4777 | 2.224257 | GGCATTTGTTCCCTGCAAAGAA | 60.224 | 45.455 | 0.00 | 0.00 | 38.91 | 2.52 |
1314 | 5185 | 3.006967 | GCAGGTCGGGTATGATATGAACT | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
2058 | 6745 | 5.742453 | GCACATGAGAAATTTCTGCATACAG | 59.258 | 40.000 | 25.12 | 17.54 | 45.95 | 2.74 |
2087 | 6774 | 9.454859 | AAAAATTAAACCACAAACAGAATGGAA | 57.545 | 25.926 | 0.00 | 0.00 | 43.62 | 3.53 |
2151 | 6838 | 5.056480 | TGCTAGTTCACCATGCATATGTAC | 58.944 | 41.667 | 0.00 | 5.37 | 32.21 | 2.90 |
2152 | 6839 | 5.289083 | TGCTAGTTCACCATGCATATGTA | 57.711 | 39.130 | 0.00 | 0.00 | 32.21 | 2.29 |
2153 | 6840 | 4.155063 | TGCTAGTTCACCATGCATATGT | 57.845 | 40.909 | 0.00 | 0.00 | 32.21 | 2.29 |
2154 | 6841 | 5.472478 | AGAATGCTAGTTCACCATGCATATG | 59.528 | 40.000 | 0.00 | 0.70 | 42.57 | 1.78 |
2182 | 6869 | 4.262377 | CCATACAGGACCTCATTAGAGCAG | 60.262 | 50.000 | 0.00 | 0.00 | 39.19 | 4.24 |
2284 | 6973 | 8.782144 | GGCATTTCCACTGAAAATGAAAAATTA | 58.218 | 29.630 | 4.98 | 0.00 | 43.37 | 1.40 |
2368 | 7061 | 5.224135 | GTTTAACGCCCAGCTTCATTTAAA | 58.776 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2822 | 7516 | 3.365767 | GCTAAAAGGTTGCTGCTCTTCAG | 60.366 | 47.826 | 0.00 | 5.12 | 45.62 | 3.02 |
2827 | 7521 | 1.135944 | GTCGCTAAAAGGTTGCTGCTC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
2890 | 7584 | 4.980434 | GCGCTTATATCCAGTTCGAAACTA | 59.020 | 41.667 | 0.00 | 0.00 | 40.46 | 2.24 |
2958 | 7652 | 0.192566 | TATTAGGTGGGGAGGGCGAT | 59.807 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2961 | 7655 | 0.696485 | TGGTATTAGGTGGGGAGGGC | 60.696 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2962 | 7656 | 1.137697 | GTGGTATTAGGTGGGGAGGG | 58.862 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2963 | 7657 | 1.768870 | CAGTGGTATTAGGTGGGGAGG | 59.231 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2967 | 7661 | 2.710096 | CACCAGTGGTATTAGGTGGG | 57.290 | 55.000 | 16.22 | 0.00 | 45.96 | 4.61 |
2981 | 7676 | 6.648310 | CAGGTTAGAGTAATATGCATCACCAG | 59.352 | 42.308 | 0.19 | 0.00 | 0.00 | 4.00 |
3013 | 7709 | 4.074259 | TCATCACCTGCAATGCCATATAC | 58.926 | 43.478 | 1.53 | 0.00 | 0.00 | 1.47 |
3103 | 7803 | 2.560105 | CTCATCACCGATGGCAGATAGA | 59.440 | 50.000 | 4.24 | 0.00 | 40.15 | 1.98 |
3200 | 7900 | 0.947180 | GGCTTCACAACCGACGCTAA | 60.947 | 55.000 | 0.00 | 0.00 | 31.24 | 3.09 |
3268 | 7968 | 8.664798 | TGAACTTTTACATAGAAATGTCCATCG | 58.335 | 33.333 | 0.00 | 0.00 | 42.92 | 3.84 |
3304 | 8004 | 0.027194 | CATGGAGTTTCTGCGATGCG | 59.973 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
3308 | 8008 | 0.610174 | AGAGCATGGAGTTTCTGCGA | 59.390 | 50.000 | 0.00 | 0.00 | 40.78 | 5.10 |
3343 | 8043 | 2.792290 | CTCGCACGTGCCATTCTCG | 61.792 | 63.158 | 33.23 | 18.04 | 37.91 | 4.04 |
3358 | 8062 | 3.854666 | ACAGAGTTTCATGTGATCCTCG | 58.145 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
3417 | 8121 | 2.568546 | ACACATGGGATAGGTCCTGA | 57.431 | 50.000 | 0.00 | 0.00 | 44.44 | 3.86 |
3531 | 8235 | 1.209504 | TCAAGCCGGGAATCTGTTAGG | 59.790 | 52.381 | 2.18 | 0.00 | 0.00 | 2.69 |
3548 | 8252 | 2.046700 | GACCCATCGGCCGTTCAA | 60.047 | 61.111 | 27.15 | 5.72 | 0.00 | 2.69 |
3567 | 8271 | 7.008447 | GTGTTTCTAAGTCACTATGTCATCGAC | 59.992 | 40.741 | 0.00 | 0.00 | 0.00 | 4.20 |
3570 | 8409 | 7.276658 | CAGGTGTTTCTAAGTCACTATGTCATC | 59.723 | 40.741 | 0.00 | 0.00 | 33.30 | 2.92 |
3599 | 8438 | 1.893808 | AGGCTCACAAACCTGCACG | 60.894 | 57.895 | 0.00 | 0.00 | 34.07 | 5.34 |
3624 | 8463 | 1.598962 | CTCCAGCCATATGTGCCCG | 60.599 | 63.158 | 11.22 | 4.99 | 0.00 | 6.13 |
3681 | 8520 | 3.655211 | CAGGCCCCCAGCTTCACT | 61.655 | 66.667 | 0.00 | 0.00 | 43.05 | 3.41 |
3699 | 8538 | 4.735132 | GGCTGCTGGTACGCGTCA | 62.735 | 66.667 | 18.63 | 7.95 | 0.00 | 4.35 |
3777 | 8616 | 2.015227 | CTCTCTCTTCCCAGCGAGCC | 62.015 | 65.000 | 0.00 | 0.00 | 32.59 | 4.70 |
3846 | 8685 | 4.588899 | AGACAATGATCCATCGGTTTTGA | 58.411 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3848 | 8687 | 7.645058 | AATTAGACAATGATCCATCGGTTTT | 57.355 | 32.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3859 | 8698 | 5.125417 | CCCGACCACAAAATTAGACAATGAT | 59.875 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
3864 | 8703 | 2.553466 | CCCCCGACCACAAAATTAGACA | 60.553 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3902 | 8747 | 5.650266 | TCATGTGTACAAACAAACACCTTCT | 59.350 | 36.000 | 0.00 | 0.00 | 44.29 | 2.85 |
4020 | 8877 | 2.235402 | TGCAGCAGAATCATCAGTCAGA | 59.765 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
4046 | 8903 | 2.629656 | GCAACATTCGGCCAGCACT | 61.630 | 57.895 | 2.24 | 0.00 | 0.00 | 4.40 |
4056 | 8918 | 3.737774 | GCTTCCAACTCTTTGCAACATTC | 59.262 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
4112 | 8974 | 9.319143 | GAAAGAACTCTGCATAATGTACTACAT | 57.681 | 33.333 | 0.00 | 0.00 | 41.31 | 2.29 |
4120 | 8982 | 5.188434 | TCCTGGAAAGAACTCTGCATAATG | 58.812 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
4124 | 8986 | 4.313020 | AATCCTGGAAAGAACTCTGCAT | 57.687 | 40.909 | 0.00 | 0.00 | 0.00 | 3.96 |
4130 | 8992 | 6.324770 | ACAATTCACAAATCCTGGAAAGAACT | 59.675 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
4131 | 8993 | 6.515832 | ACAATTCACAAATCCTGGAAAGAAC | 58.484 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4132 | 8994 | 6.239289 | GGACAATTCACAAATCCTGGAAAGAA | 60.239 | 38.462 | 0.00 | 1.51 | 0.00 | 2.52 |
4133 | 8995 | 5.243730 | GGACAATTCACAAATCCTGGAAAGA | 59.756 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4135 | 8997 | 4.898265 | TGGACAATTCACAAATCCTGGAAA | 59.102 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
4136 | 8998 | 4.478203 | TGGACAATTCACAAATCCTGGAA | 58.522 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
4137 | 8999 | 4.111255 | TGGACAATTCACAAATCCTGGA | 57.889 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
4138 | 9000 | 4.813027 | CTTGGACAATTCACAAATCCTGG | 58.187 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
4139 | 9001 | 4.240096 | GCTTGGACAATTCACAAATCCTG | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4140 | 9002 | 3.259123 | GGCTTGGACAATTCACAAATCCT | 59.741 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
4141 | 9003 | 3.006752 | TGGCTTGGACAATTCACAAATCC | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
4142 | 9004 | 4.240096 | CTGGCTTGGACAATTCACAAATC | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
4144 | 9006 | 3.030291 | ACTGGCTTGGACAATTCACAAA | 58.970 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
4145 | 9007 | 2.361757 | CACTGGCTTGGACAATTCACAA | 59.638 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
4146 | 9008 | 1.955778 | CACTGGCTTGGACAATTCACA | 59.044 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
4148 | 9010 | 2.655090 | TCACTGGCTTGGACAATTCA | 57.345 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4149 | 9011 | 3.057946 | GTCTTCACTGGCTTGGACAATTC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
4151 | 9013 | 2.508526 | GTCTTCACTGGCTTGGACAAT | 58.491 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
4152 | 9014 | 1.476833 | GGTCTTCACTGGCTTGGACAA | 60.477 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
4153 | 9015 | 0.108585 | GGTCTTCACTGGCTTGGACA | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4154 | 9016 | 0.398318 | AGGTCTTCACTGGCTTGGAC | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4155 | 9017 | 0.687354 | GAGGTCTTCACTGGCTTGGA | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4156 | 9018 | 0.689623 | AGAGGTCTTCACTGGCTTGG | 59.310 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4157 | 9019 | 2.149578 | CAAGAGGTCTTCACTGGCTTG | 58.850 | 52.381 | 0.00 | 0.00 | 33.11 | 4.01 |
4160 | 9022 | 0.250467 | TGCAAGAGGTCTTCACTGGC | 60.250 | 55.000 | 0.00 | 0.00 | 33.11 | 4.85 |
4161 | 9023 | 2.260844 | TTGCAAGAGGTCTTCACTGG | 57.739 | 50.000 | 0.00 | 0.00 | 33.11 | 4.00 |
4164 | 9045 | 3.569701 | TCCAAATTGCAAGAGGTCTTCAC | 59.430 | 43.478 | 4.94 | 0.00 | 33.11 | 3.18 |
4171 | 9052 | 2.692041 | GAGGGATCCAAATTGCAAGAGG | 59.308 | 50.000 | 15.23 | 6.77 | 0.00 | 3.69 |
4180 | 9061 | 3.621558 | GAAGAAACCGAGGGATCCAAAT | 58.378 | 45.455 | 15.23 | 0.00 | 0.00 | 2.32 |
4186 | 9067 | 3.739401 | AAATGGAAGAAACCGAGGGAT | 57.261 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
4189 | 9070 | 6.811665 | GGAAAATAAAATGGAAGAAACCGAGG | 59.188 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
4213 | 9094 | 9.929180 | TCAAGAAAATAGTCCATTATCTATCGG | 57.071 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
4218 | 9099 | 8.985315 | TGCATCAAGAAAATAGTCCATTATCT | 57.015 | 30.769 | 0.00 | 0.00 | 0.00 | 1.98 |
4235 | 9116 | 4.913335 | AATGCCAGAGTTATGCATCAAG | 57.087 | 40.909 | 0.19 | 0.00 | 44.49 | 3.02 |
4247 | 9129 | 2.129607 | GTGTTGTTGCAAATGCCAGAG | 58.870 | 47.619 | 0.00 | 0.00 | 41.18 | 3.35 |
4251 | 9133 | 2.477375 | CTGATGTGTTGTTGCAAATGCC | 59.523 | 45.455 | 0.00 | 0.00 | 41.18 | 4.40 |
4256 | 9138 | 1.750206 | ACAGCTGATGTGTTGTTGCAA | 59.250 | 42.857 | 23.35 | 0.00 | 41.91 | 4.08 |
4270 | 9152 | 1.153409 | CTGCCTAGCCTCACAGCTG | 60.153 | 63.158 | 13.48 | 13.48 | 44.67 | 4.24 |
4272 | 9154 | 0.179936 | ATTCTGCCTAGCCTCACAGC | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4273 | 9155 | 3.133721 | AGTTATTCTGCCTAGCCTCACAG | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
4274 | 9156 | 3.107601 | AGTTATTCTGCCTAGCCTCACA | 58.892 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
4275 | 9157 | 3.133003 | TCAGTTATTCTGCCTAGCCTCAC | 59.867 | 47.826 | 0.00 | 0.00 | 43.32 | 3.51 |
4276 | 9158 | 3.133003 | GTCAGTTATTCTGCCTAGCCTCA | 59.867 | 47.826 | 0.00 | 0.00 | 43.32 | 3.86 |
4277 | 9159 | 3.493524 | GGTCAGTTATTCTGCCTAGCCTC | 60.494 | 52.174 | 0.00 | 0.00 | 43.32 | 4.70 |
4278 | 9160 | 2.436173 | GGTCAGTTATTCTGCCTAGCCT | 59.564 | 50.000 | 0.00 | 0.00 | 43.32 | 4.58 |
4279 | 9161 | 2.170607 | TGGTCAGTTATTCTGCCTAGCC | 59.829 | 50.000 | 0.00 | 0.00 | 43.32 | 3.93 |
4280 | 9162 | 3.543680 | TGGTCAGTTATTCTGCCTAGC | 57.456 | 47.619 | 0.00 | 0.00 | 43.32 | 3.42 |
4281 | 9163 | 5.282055 | TCATGGTCAGTTATTCTGCCTAG | 57.718 | 43.478 | 0.00 | 0.00 | 43.32 | 3.02 |
4283 | 9165 | 4.574674 | TTCATGGTCAGTTATTCTGCCT | 57.425 | 40.909 | 0.00 | 0.00 | 43.32 | 4.75 |
4294 | 9176 | 8.744465 | CCAATTTGGACCCATTTCATGGTCAG | 62.744 | 46.154 | 10.03 | 0.00 | 44.28 | 3.51 |
4321 | 9462 | 3.721466 | CGGTACACGTGCTGTTTTC | 57.279 | 52.632 | 17.22 | 0.00 | 37.93 | 2.29 |
4365 | 9506 | 5.185635 | TCTTCATATTTCCAAACCCTGCTTG | 59.814 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
4371 | 9512 | 5.976458 | TGCATTCTTCATATTTCCAAACCC | 58.024 | 37.500 | 0.00 | 0.00 | 0.00 | 4.11 |
4372 | 9513 | 7.983484 | AGAATGCATTCTTCATATTTCCAAACC | 59.017 | 33.333 | 31.78 | 5.19 | 44.28 | 3.27 |
4375 | 9516 | 7.201938 | GGGAGAATGCATTCTTCATATTTCCAA | 60.202 | 37.037 | 37.09 | 0.00 | 46.47 | 3.53 |
4376 | 9517 | 6.266103 | GGGAGAATGCATTCTTCATATTTCCA | 59.734 | 38.462 | 37.09 | 0.00 | 46.47 | 3.53 |
4503 | 9644 | 8.806177 | TTTGCAAATATCATGCTTGCTATTAG | 57.194 | 30.769 | 8.05 | 0.00 | 44.57 | 1.73 |
4504 | 9645 | 9.033481 | GTTTTGCAAATATCATGCTTGCTATTA | 57.967 | 29.630 | 13.65 | 0.00 | 44.57 | 0.98 |
4550 | 9702 | 3.389741 | GCGTGAATGAAGCCAGTTG | 57.610 | 52.632 | 0.00 | 0.00 | 0.00 | 3.16 |
4583 | 9735 | 4.577693 | ACAACAGTTCATGGCTGCTATATG | 59.422 | 41.667 | 15.04 | 2.28 | 37.47 | 1.78 |
4584 | 9736 | 4.785301 | ACAACAGTTCATGGCTGCTATAT | 58.215 | 39.130 | 15.04 | 0.00 | 37.47 | 0.86 |
4640 | 9805 | 0.178932 | TCCAGGAGCTACCACTGTGT | 60.179 | 55.000 | 7.08 | 0.00 | 42.04 | 3.72 |
4645 | 9810 | 2.736347 | TCTAGTTCCAGGAGCTACCAC | 58.264 | 52.381 | 8.94 | 0.00 | 42.04 | 4.16 |
4656 | 9821 | 4.081087 | GCTGGTCTTATGGTTCTAGTTCCA | 60.081 | 45.833 | 10.09 | 10.09 | 38.14 | 3.53 |
4704 | 9869 | 2.814336 | GGTGGCATCTTCTCGTTCTTTT | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
4751 | 9916 | 1.995542 | TCCCTTGATCTTGAGGCCTTT | 59.004 | 47.619 | 6.77 | 0.00 | 0.00 | 3.11 |
4800 | 9966 | 3.250744 | CGATTAGCTCGGTGACAGAAAA | 58.749 | 45.455 | 0.00 | 0.00 | 43.82 | 2.29 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.