Multiple sequence alignment - TraesCS5A01G002300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G002300 chr5A 100.000 3761 0 0 1 3761 2078522 2074762 0.000000e+00 6946
1 TraesCS5A01G002300 chr5A 99.249 2795 16 3 1 2792 387257643 387260435 0.000000e+00 5040
2 TraesCS5A01G002300 chr5A 94.118 153 8 1 3609 3761 47434904 47434753 8.120000e-57 231
3 TraesCS5A01G002300 chr5A 89.610 154 15 1 3149 3302 2075150 2074998 1.070000e-45 195
4 TraesCS5A01G002300 chr3B 99.392 2795 17 0 1 2795 769389830 769387036 0.000000e+00 5068
5 TraesCS5A01G002300 chr3B 99.283 2790 20 0 1 2790 406865568 406868357 0.000000e+00 5042
6 TraesCS5A01G002300 chr3B 84.234 222 29 6 3311 3528 210603731 210603950 1.060000e-50 211
7 TraesCS5A01G002300 chr3B 88.024 167 15 5 3149 3312 589453944 589454108 3.830000e-45 193
8 TraesCS5A01G002300 chr3B 86.982 169 16 6 3148 3312 128938870 128939036 6.420000e-43 185
9 TraesCS5A01G002300 chr7A 99.427 2791 16 0 1 2791 705598542 705601332 0.000000e+00 5066
10 TraesCS5A01G002300 chr7A 99.180 2804 18 3 1 2801 499576676 499573875 0.000000e+00 5046
11 TraesCS5A01G002300 chr5B 99.248 2793 18 1 1 2790 473813924 473811132 0.000000e+00 5038
12 TraesCS5A01G002300 chr5B 85.714 231 23 10 3311 3534 524539593 524539820 6.280000e-58 235
13 TraesCS5A01G002300 chr5B 85.520 221 23 9 3311 3525 442848230 442848013 4.890000e-54 222
14 TraesCS5A01G002300 chr4A 99.213 2796 19 1 1 2793 454785774 454782979 0.000000e+00 5038
15 TraesCS5A01G002300 chr1A 99.213 2794 19 1 1 2791 66999918 67002711 0.000000e+00 5035
16 TraesCS5A01G002300 chr1A 94.118 153 9 0 3609 3761 154686406 154686558 2.260000e-57 233
17 TraesCS5A01G002300 chr1A 83.945 218 26 9 3311 3522 375324530 375324744 2.290000e-47 200
18 TraesCS5A01G002300 chr2B 99.178 2797 18 3 1 2794 384101803 384104597 0.000000e+00 5033
19 TraesCS5A01G002300 chr2B 89.610 154 13 3 3149 3300 542901085 542900933 3.830000e-45 193
20 TraesCS5A01G002300 chr2B 85.965 171 14 10 3149 3312 555383315 555383148 1.390000e-39 174
21 TraesCS5A01G002300 chr5D 90.661 439 36 4 2795 3229 2689337 2689774 2.520000e-161 579
22 TraesCS5A01G002300 chr5D 87.179 234 13 5 3373 3605 2689694 2689911 2.240000e-62 250
23 TraesCS5A01G002300 chr2D 94.340 159 8 1 3603 3761 495422678 495422835 3.750000e-60 243
24 TraesCS5A01G002300 chr2D 93.548 155 9 1 3607 3761 448101598 448101445 2.920000e-56 230
25 TraesCS5A01G002300 chr3D 94.194 155 8 1 3607 3761 517983304 517983151 6.280000e-58 235
26 TraesCS5A01G002300 chr3D 94.156 154 8 1 3608 3761 440982867 440982715 2.260000e-57 233
27 TraesCS5A01G002300 chr3D 86.070 201 25 3 3311 3509 495663265 495663066 2.940000e-51 213
28 TraesCS5A01G002300 chr2A 94.118 153 8 1 3609 3761 200790653 200790804 8.120000e-57 231
29 TraesCS5A01G002300 chr2A 93.548 155 10 0 3607 3761 528423006 528422852 8.120000e-57 231
30 TraesCS5A01G002300 chr2A 85.024 207 23 8 3328 3529 751849843 751849640 1.770000e-48 204
31 TraesCS5A01G002300 chr1D 94.118 153 8 1 3609 3761 102405947 102406098 8.120000e-57 231
32 TraesCS5A01G002300 chr7B 84.956 226 24 10 3311 3528 651307928 651308151 1.760000e-53 220
33 TraesCS5A01G002300 chrUn 84.862 218 27 6 3315 3528 220212722 220212507 8.180000e-52 215
34 TraesCS5A01G002300 chr4D 84.000 225 27 9 3311 3529 8019297 8019076 1.370000e-49 207
35 TraesCS5A01G002300 chr3A 83.628 226 26 11 3311 3529 653903591 653903812 6.370000e-48 202
36 TraesCS5A01G002300 chr6D 89.677 155 13 3 3149 3302 8112693 8112845 1.070000e-45 195
37 TraesCS5A01G002300 chr6A 89.103 156 13 4 3149 3302 8448362 8448515 1.380000e-44 191
38 TraesCS5A01G002300 chr7D 87.195 164 19 2 3149 3311 385446173 385446011 6.420000e-43 185
39 TraesCS5A01G002300 chr6B 87.059 170 13 9 3149 3312 17038737 17038903 2.310000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G002300 chr5A 2074762 2078522 3760 True 3570.5 6946 94.805 1 3761 2 chr5A.!!$R2 3760
1 TraesCS5A01G002300 chr5A 387257643 387260435 2792 False 5040.0 5040 99.249 1 2792 1 chr5A.!!$F1 2791
2 TraesCS5A01G002300 chr3B 769387036 769389830 2794 True 5068.0 5068 99.392 1 2795 1 chr3B.!!$R1 2794
3 TraesCS5A01G002300 chr3B 406865568 406868357 2789 False 5042.0 5042 99.283 1 2790 1 chr3B.!!$F3 2789
4 TraesCS5A01G002300 chr7A 705598542 705601332 2790 False 5066.0 5066 99.427 1 2791 1 chr7A.!!$F1 2790
5 TraesCS5A01G002300 chr7A 499573875 499576676 2801 True 5046.0 5046 99.180 1 2801 1 chr7A.!!$R1 2800
6 TraesCS5A01G002300 chr5B 473811132 473813924 2792 True 5038.0 5038 99.248 1 2790 1 chr5B.!!$R2 2789
7 TraesCS5A01G002300 chr4A 454782979 454785774 2795 True 5038.0 5038 99.213 1 2793 1 chr4A.!!$R1 2792
8 TraesCS5A01G002300 chr1A 66999918 67002711 2793 False 5035.0 5035 99.213 1 2791 1 chr1A.!!$F1 2790
9 TraesCS5A01G002300 chr2B 384101803 384104597 2794 False 5033.0 5033 99.178 1 2794 1 chr2B.!!$F1 2793
10 TraesCS5A01G002300 chr5D 2689337 2689911 574 False 414.5 579 88.920 2795 3605 2 chr5D.!!$F1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 2.100197 ACACTTCTATCAGCGCCACTA 58.900 47.619 2.29 0.0 0.00 2.74 F
1119 1120 1.892474 GGCCTTTGTGGAAGCATTACA 59.108 47.619 0.00 0.0 35.81 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1569 2.650116 AAGTCCTCTCGCCACGCAT 61.65 57.895 0.0 0.0 0.00 4.73 R
3042 3053 0.250338 AAACGGTCAGACTTGAGGGC 60.25 55.000 0.0 0.0 32.98 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.100197 ACACTTCTATCAGCGCCACTA 58.900 47.619 2.29 0.00 0.00 2.74
561 562 2.661176 TCTCACCTTCCAGGGGTATT 57.339 50.000 0.00 0.00 40.57 1.89
1119 1120 1.892474 GGCCTTTGTGGAAGCATTACA 59.108 47.619 0.00 0.00 35.81 2.41
1568 1569 3.629142 TCTGATCGACCACACTAGAGA 57.371 47.619 0.00 0.00 0.00 3.10
2848 2855 1.280982 CTACACAGTACGCTGCATGG 58.719 55.000 0.00 0.00 46.30 3.66
2883 2890 6.590234 ATTTAGATGTTTTCTTGTGGGGAC 57.410 37.500 0.00 0.00 35.79 4.46
2891 2898 2.859165 TCTTGTGGGGACTCATTCAC 57.141 50.000 0.00 0.00 33.18 3.18
2898 2905 1.576356 GGGACTCATTCACATCGCTC 58.424 55.000 0.00 0.00 0.00 5.03
2900 2907 1.134699 GGACTCATTCACATCGCTCCA 60.135 52.381 0.00 0.00 0.00 3.86
2943 2950 7.542025 AGGATATTGCAAAAGATCTTGACAAC 58.458 34.615 9.17 3.06 30.58 3.32
2955 2962 8.743085 AAGATCTTGACAACACTATGCATTAT 57.257 30.769 7.30 0.00 0.00 1.28
2969 2976 6.947733 ACTATGCATTATGCTAATTGGCCTAA 59.052 34.615 18.44 12.16 45.31 2.69
2985 2992 1.668419 CTAAAACCAGAGGCCATCCG 58.332 55.000 5.01 0.00 37.47 4.18
2992 2999 2.045926 GAGGCCATCCGTGCAACT 60.046 61.111 5.01 0.00 37.47 3.16
3042 3053 4.280174 CCATTAGGAGCTTCCATTGATTGG 59.720 45.833 5.21 0.00 41.84 3.16
3057 3068 0.329596 ATTGGCCCTCAAGTCTGACC 59.670 55.000 0.00 0.00 38.95 4.02
3064 3075 0.868406 CTCAAGTCTGACCGTTTGCC 59.132 55.000 3.76 0.00 0.00 4.52
3069 3080 1.692519 AGTCTGACCGTTTGCCTAGTT 59.307 47.619 3.76 0.00 0.00 2.24
3104 3115 7.735917 AGATCATCTTCAATTATACGGTGGAA 58.264 34.615 0.00 0.00 0.00 3.53
3127 3138 8.296713 GGAAACACTTGAAGAATGCACTAATAA 58.703 33.333 0.00 0.00 0.00 1.40
3144 3155 7.309194 GCACTAATAAAAATGTCTGGACCTTGT 60.309 37.037 0.00 0.00 0.00 3.16
3145 3156 8.023128 CACTAATAAAAATGTCTGGACCTTGTG 58.977 37.037 0.00 0.00 0.00 3.33
3152 3163 0.108585 TCTGGACCTTGTGCCTGTTC 59.891 55.000 0.00 0.00 0.00 3.18
3159 3170 2.002586 CCTTGTGCCTGTTCAGTATCG 58.997 52.381 0.00 0.00 0.00 2.92
3186 3197 8.740906 TGATTAGTTAGGAAAGATAGGATAGCG 58.259 37.037 0.00 0.00 28.09 4.26
3193 3204 7.784470 AGGAAAGATAGGATAGCGTAAGATT 57.216 36.000 0.00 0.00 43.02 2.40
3232 3243 8.539770 CTTGTACTTCAAGTTGATCATGTACT 57.460 34.615 23.53 0.00 45.89 2.73
3233 3244 8.534333 TTGTACTTCAAGTTGATCATGTACTC 57.466 34.615 23.53 11.14 32.76 2.59
3234 3245 7.097192 TGTACTTCAAGTTGATCATGTACTCC 58.903 38.462 23.53 10.73 32.76 3.85
3235 3246 6.365970 ACTTCAAGTTGATCATGTACTCCT 57.634 37.500 6.36 0.00 0.00 3.69
3236 3247 7.482169 ACTTCAAGTTGATCATGTACTCCTA 57.518 36.000 6.36 0.00 0.00 2.94
3237 3248 8.083828 ACTTCAAGTTGATCATGTACTCCTAT 57.916 34.615 6.36 0.00 0.00 2.57
3238 3249 9.201989 ACTTCAAGTTGATCATGTACTCCTATA 57.798 33.333 6.36 0.00 0.00 1.31
3247 3258 9.314133 TGATCATGTACTCCTATATATATGCCC 57.686 37.037 5.44 0.00 0.00 5.36
3253 3264 5.141182 ACTCCTATATATATGCCCACGAGG 58.859 45.833 5.44 2.71 39.47 4.63
3262 3273 4.473643 CCCACGAGGCTCAAACAA 57.526 55.556 15.95 0.00 0.00 2.83
3263 3274 2.946947 CCCACGAGGCTCAAACAAT 58.053 52.632 15.95 0.00 0.00 2.71
3264 3275 0.523072 CCCACGAGGCTCAAACAATG 59.477 55.000 15.95 0.00 0.00 2.82
3265 3276 0.109597 CCACGAGGCTCAAACAATGC 60.110 55.000 15.95 0.00 0.00 3.56
3266 3277 0.592637 CACGAGGCTCAAACAATGCA 59.407 50.000 15.95 0.00 0.00 3.96
3267 3278 1.001487 CACGAGGCTCAAACAATGCAA 60.001 47.619 15.95 0.00 0.00 4.08
3268 3279 1.888512 ACGAGGCTCAAACAATGCAAT 59.111 42.857 15.95 0.00 0.00 3.56
3269 3280 3.081061 ACGAGGCTCAAACAATGCAATA 58.919 40.909 15.95 0.00 0.00 1.90
3270 3281 3.505680 ACGAGGCTCAAACAATGCAATAA 59.494 39.130 15.95 0.00 0.00 1.40
3271 3282 3.853671 CGAGGCTCAAACAATGCAATAAC 59.146 43.478 15.95 0.00 0.00 1.89
3272 3283 4.615682 CGAGGCTCAAACAATGCAATAACA 60.616 41.667 15.95 0.00 0.00 2.41
3273 3284 5.212532 AGGCTCAAACAATGCAATAACAA 57.787 34.783 0.00 0.00 0.00 2.83
3274 3285 5.797051 AGGCTCAAACAATGCAATAACAAT 58.203 33.333 0.00 0.00 0.00 2.71
3275 3286 6.232692 AGGCTCAAACAATGCAATAACAATT 58.767 32.000 0.00 0.00 0.00 2.32
3276 3287 6.369615 AGGCTCAAACAATGCAATAACAATTC 59.630 34.615 0.00 0.00 0.00 2.17
3277 3288 6.402442 GGCTCAAACAATGCAATAACAATTCC 60.402 38.462 0.00 0.00 0.00 3.01
3278 3289 6.147492 GCTCAAACAATGCAATAACAATTCCA 59.853 34.615 0.00 0.00 0.00 3.53
3279 3290 7.418840 TCAAACAATGCAATAACAATTCCAC 57.581 32.000 0.00 0.00 0.00 4.02
3280 3291 6.426328 TCAAACAATGCAATAACAATTCCACC 59.574 34.615 0.00 0.00 0.00 4.61
3281 3292 5.480642 ACAATGCAATAACAATTCCACCA 57.519 34.783 0.00 0.00 0.00 4.17
3282 3293 5.862845 ACAATGCAATAACAATTCCACCAA 58.137 33.333 0.00 0.00 0.00 3.67
3283 3294 6.294473 ACAATGCAATAACAATTCCACCAAA 58.706 32.000 0.00 0.00 0.00 3.28
3284 3295 6.941436 ACAATGCAATAACAATTCCACCAAAT 59.059 30.769 0.00 0.00 0.00 2.32
3285 3296 7.119553 ACAATGCAATAACAATTCCACCAAATC 59.880 33.333 0.00 0.00 0.00 2.17
3286 3297 5.486526 TGCAATAACAATTCCACCAAATCC 58.513 37.500 0.00 0.00 0.00 3.01
3287 3298 4.875536 GCAATAACAATTCCACCAAATCCC 59.124 41.667 0.00 0.00 0.00 3.85
3288 3299 5.427378 CAATAACAATTCCACCAAATCCCC 58.573 41.667 0.00 0.00 0.00 4.81
3289 3300 1.951209 ACAATTCCACCAAATCCCCC 58.049 50.000 0.00 0.00 0.00 5.40
3290 3301 1.436752 ACAATTCCACCAAATCCCCCT 59.563 47.619 0.00 0.00 0.00 4.79
3291 3302 2.110578 CAATTCCACCAAATCCCCCTC 58.889 52.381 0.00 0.00 0.00 4.30
3292 3303 1.698874 ATTCCACCAAATCCCCCTCT 58.301 50.000 0.00 0.00 0.00 3.69
3293 3304 2.369668 TTCCACCAAATCCCCCTCTA 57.630 50.000 0.00 0.00 0.00 2.43
3294 3305 1.591768 TCCACCAAATCCCCCTCTAC 58.408 55.000 0.00 0.00 0.00 2.59
3295 3306 0.551396 CCACCAAATCCCCCTCTACC 59.449 60.000 0.00 0.00 0.00 3.18
3296 3307 1.596496 CACCAAATCCCCCTCTACCT 58.404 55.000 0.00 0.00 0.00 3.08
3297 3308 1.923148 CACCAAATCCCCCTCTACCTT 59.077 52.381 0.00 0.00 0.00 3.50
3298 3309 2.311841 CACCAAATCCCCCTCTACCTTT 59.688 50.000 0.00 0.00 0.00 3.11
3299 3310 2.581246 ACCAAATCCCCCTCTACCTTTC 59.419 50.000 0.00 0.00 0.00 2.62
3300 3311 2.853077 CCAAATCCCCCTCTACCTTTCT 59.147 50.000 0.00 0.00 0.00 2.52
3301 3312 4.045022 CCAAATCCCCCTCTACCTTTCTA 58.955 47.826 0.00 0.00 0.00 2.10
3302 3313 4.665483 CCAAATCCCCCTCTACCTTTCTAT 59.335 45.833 0.00 0.00 0.00 1.98
3303 3314 5.850028 CCAAATCCCCCTCTACCTTTCTATA 59.150 44.000 0.00 0.00 0.00 1.31
3304 3315 6.505700 CCAAATCCCCCTCTACCTTTCTATAT 59.494 42.308 0.00 0.00 0.00 0.86
3305 3316 7.398024 CAAATCCCCCTCTACCTTTCTATATG 58.602 42.308 0.00 0.00 0.00 1.78
3306 3317 5.024803 TCCCCCTCTACCTTTCTATATGG 57.975 47.826 0.00 0.00 0.00 2.74
3307 3318 4.426023 TCCCCCTCTACCTTTCTATATGGT 59.574 45.833 0.00 0.00 37.92 3.55
3308 3319 5.102346 TCCCCCTCTACCTTTCTATATGGTT 60.102 44.000 0.00 0.00 35.92 3.67
3309 3320 5.611408 CCCCCTCTACCTTTCTATATGGTTT 59.389 44.000 0.00 0.00 35.92 3.27
3310 3321 6.239915 CCCCCTCTACCTTTCTATATGGTTTC 60.240 46.154 0.00 0.00 35.92 2.78
3311 3322 6.559157 CCCCTCTACCTTTCTATATGGTTTCT 59.441 42.308 0.00 0.00 35.92 2.52
3312 3323 7.072581 CCCCTCTACCTTTCTATATGGTTTCTT 59.927 40.741 0.00 0.00 35.92 2.52
3313 3324 9.155785 CCCTCTACCTTTCTATATGGTTTCTTA 57.844 37.037 0.00 0.00 35.92 2.10
3314 3325 9.984190 CCTCTACCTTTCTATATGGTTTCTTAC 57.016 37.037 0.00 0.00 35.92 2.34
3329 3340 7.603963 GGTTTCTTACCTTCTGATTCTTCTC 57.396 40.000 0.00 0.00 44.10 2.87
3330 3341 6.596106 GGTTTCTTACCTTCTGATTCTTCTCC 59.404 42.308 0.00 0.00 44.10 3.71
3331 3342 6.935240 TTCTTACCTTCTGATTCTTCTCCA 57.065 37.500 0.00 0.00 0.00 3.86
3332 3343 6.537453 TCTTACCTTCTGATTCTTCTCCAG 57.463 41.667 0.00 0.00 0.00 3.86
3333 3344 6.019748 TCTTACCTTCTGATTCTTCTCCAGT 58.980 40.000 0.00 0.00 0.00 4.00
3334 3345 4.817318 ACCTTCTGATTCTTCTCCAGTC 57.183 45.455 0.00 0.00 0.00 3.51
3335 3346 4.424842 ACCTTCTGATTCTTCTCCAGTCT 58.575 43.478 0.00 0.00 0.00 3.24
3336 3347 4.466015 ACCTTCTGATTCTTCTCCAGTCTC 59.534 45.833 0.00 0.00 0.00 3.36
3337 3348 4.465660 CCTTCTGATTCTTCTCCAGTCTCA 59.534 45.833 0.00 0.00 0.00 3.27
3338 3349 5.394443 CCTTCTGATTCTTCTCCAGTCTCAG 60.394 48.000 0.00 0.00 35.30 3.35
3339 3350 4.671831 TCTGATTCTTCTCCAGTCTCAGT 58.328 43.478 0.00 0.00 35.41 3.41
3340 3351 5.821097 TCTGATTCTTCTCCAGTCTCAGTA 58.179 41.667 0.00 0.00 35.41 2.74
3341 3352 6.430864 TCTGATTCTTCTCCAGTCTCAGTAT 58.569 40.000 0.00 0.00 35.41 2.12
3342 3353 6.545666 TCTGATTCTTCTCCAGTCTCAGTATC 59.454 42.308 0.00 0.00 35.41 2.24
3343 3354 6.430864 TGATTCTTCTCCAGTCTCAGTATCT 58.569 40.000 0.00 0.00 0.00 1.98
3344 3355 6.320926 TGATTCTTCTCCAGTCTCAGTATCTG 59.679 42.308 0.00 0.00 0.00 2.90
3345 3356 3.951037 TCTTCTCCAGTCTCAGTATCTGC 59.049 47.826 0.00 0.00 0.00 4.26
3346 3357 3.372440 TCTCCAGTCTCAGTATCTGCA 57.628 47.619 0.00 0.00 0.00 4.41
3347 3358 3.908476 TCTCCAGTCTCAGTATCTGCAT 58.092 45.455 0.00 0.00 0.00 3.96
3348 3359 3.888323 TCTCCAGTCTCAGTATCTGCATC 59.112 47.826 0.00 0.00 0.00 3.91
3349 3360 2.961741 TCCAGTCTCAGTATCTGCATCC 59.038 50.000 0.00 0.00 0.00 3.51
3350 3361 2.036992 CCAGTCTCAGTATCTGCATCCC 59.963 54.545 0.00 0.00 0.00 3.85
3351 3362 2.964464 CAGTCTCAGTATCTGCATCCCT 59.036 50.000 0.00 0.00 0.00 4.20
3352 3363 4.148079 CAGTCTCAGTATCTGCATCCCTA 58.852 47.826 0.00 0.00 0.00 3.53
3353 3364 4.022416 CAGTCTCAGTATCTGCATCCCTAC 60.022 50.000 0.00 0.00 0.00 3.18
3354 3365 3.257127 GTCTCAGTATCTGCATCCCTACC 59.743 52.174 0.00 0.00 0.00 3.18
3355 3366 3.117131 TCTCAGTATCTGCATCCCTACCA 60.117 47.826 0.00 0.00 0.00 3.25
3356 3367 3.837146 CTCAGTATCTGCATCCCTACCAT 59.163 47.826 0.00 0.00 0.00 3.55
3357 3368 4.234550 TCAGTATCTGCATCCCTACCATT 58.765 43.478 0.00 0.00 0.00 3.16
3358 3369 4.040829 TCAGTATCTGCATCCCTACCATTG 59.959 45.833 0.00 0.00 0.00 2.82
3359 3370 3.976654 AGTATCTGCATCCCTACCATTGT 59.023 43.478 0.00 0.00 0.00 2.71
3360 3371 3.959495 ATCTGCATCCCTACCATTGTT 57.041 42.857 0.00 0.00 0.00 2.83
3361 3372 5.606749 AGTATCTGCATCCCTACCATTGTTA 59.393 40.000 0.00 0.00 0.00 2.41
3362 3373 5.589367 ATCTGCATCCCTACCATTGTTAT 57.411 39.130 0.00 0.00 0.00 1.89
3363 3374 5.387113 TCTGCATCCCTACCATTGTTATT 57.613 39.130 0.00 0.00 0.00 1.40
3364 3375 5.132502 TCTGCATCCCTACCATTGTTATTG 58.867 41.667 0.00 0.00 0.00 1.90
3365 3376 3.636300 TGCATCCCTACCATTGTTATTGC 59.364 43.478 0.00 0.00 0.00 3.56
3366 3377 3.304659 GCATCCCTACCATTGTTATTGCG 60.305 47.826 0.00 0.00 0.00 4.85
3367 3378 2.925724 TCCCTACCATTGTTATTGCGG 58.074 47.619 0.00 0.00 0.00 5.69
3368 3379 1.953686 CCCTACCATTGTTATTGCGGG 59.046 52.381 0.00 0.00 0.00 6.13
3369 3380 1.953686 CCTACCATTGTTATTGCGGGG 59.046 52.381 0.00 0.00 0.00 5.73
3370 3381 2.650322 CTACCATTGTTATTGCGGGGT 58.350 47.619 0.00 0.00 0.00 4.95
3371 3382 1.181786 ACCATTGTTATTGCGGGGTG 58.818 50.000 0.00 0.00 0.00 4.61
3372 3383 1.181786 CCATTGTTATTGCGGGGTGT 58.818 50.000 0.00 0.00 0.00 4.16
3373 3384 1.135141 CCATTGTTATTGCGGGGTGTG 60.135 52.381 0.00 0.00 0.00 3.82
3374 3385 1.543802 CATTGTTATTGCGGGGTGTGT 59.456 47.619 0.00 0.00 0.00 3.72
3375 3386 1.693627 TTGTTATTGCGGGGTGTGTT 58.306 45.000 0.00 0.00 0.00 3.32
3376 3387 0.955178 TGTTATTGCGGGGTGTGTTG 59.045 50.000 0.00 0.00 0.00 3.33
3377 3388 1.240256 GTTATTGCGGGGTGTGTTGA 58.760 50.000 0.00 0.00 0.00 3.18
3378 3389 1.199097 GTTATTGCGGGGTGTGTTGAG 59.801 52.381 0.00 0.00 0.00 3.02
3379 3390 0.398696 TATTGCGGGGTGTGTTGAGT 59.601 50.000 0.00 0.00 0.00 3.41
3380 3391 0.398696 ATTGCGGGGTGTGTTGAGTA 59.601 50.000 0.00 0.00 0.00 2.59
3381 3392 0.533308 TTGCGGGGTGTGTTGAGTAC 60.533 55.000 0.00 0.00 0.00 2.73
3382 3393 1.670083 GCGGGGTGTGTTGAGTACC 60.670 63.158 0.00 0.00 0.00 3.34
3383 3394 1.373748 CGGGGTGTGTTGAGTACCG 60.374 63.158 0.00 0.00 35.31 4.02
3384 3395 1.750297 GGGGTGTGTTGAGTACCGT 59.250 57.895 0.00 0.00 35.31 4.83
3385 3396 0.968405 GGGGTGTGTTGAGTACCGTA 59.032 55.000 0.00 0.00 35.31 4.02
3386 3397 1.344114 GGGGTGTGTTGAGTACCGTAA 59.656 52.381 0.00 0.00 35.31 3.18
3387 3398 2.027837 GGGGTGTGTTGAGTACCGTAAT 60.028 50.000 0.00 0.00 35.31 1.89
3388 3399 3.557686 GGGGTGTGTTGAGTACCGTAATT 60.558 47.826 0.00 0.00 35.31 1.40
3389 3400 4.322650 GGGGTGTGTTGAGTACCGTAATTA 60.323 45.833 0.00 0.00 35.31 1.40
3390 3401 4.866486 GGGTGTGTTGAGTACCGTAATTAG 59.134 45.833 0.00 0.00 35.31 1.73
3391 3402 5.473039 GGTGTGTTGAGTACCGTAATTAGT 58.527 41.667 0.00 0.00 0.00 2.24
3392 3403 5.928264 GGTGTGTTGAGTACCGTAATTAGTT 59.072 40.000 0.00 0.00 0.00 2.24
3393 3404 7.090173 GGTGTGTTGAGTACCGTAATTAGTTA 58.910 38.462 0.00 0.00 0.00 2.24
3394 3405 7.274250 GGTGTGTTGAGTACCGTAATTAGTTAG 59.726 40.741 0.00 0.00 0.00 2.34
3395 3406 7.274250 GTGTGTTGAGTACCGTAATTAGTTAGG 59.726 40.741 0.00 0.00 0.00 2.69
3396 3407 7.176515 TGTGTTGAGTACCGTAATTAGTTAGGA 59.823 37.037 0.00 0.00 0.00 2.94
3397 3408 8.028938 GTGTTGAGTACCGTAATTAGTTAGGAA 58.971 37.037 0.00 0.00 0.00 3.36
3398 3409 8.246180 TGTTGAGTACCGTAATTAGTTAGGAAG 58.754 37.037 0.00 0.00 0.00 3.46
3399 3410 8.462016 GTTGAGTACCGTAATTAGTTAGGAAGA 58.538 37.037 0.00 0.00 0.00 2.87
3400 3411 8.757982 TGAGTACCGTAATTAGTTAGGAAGAT 57.242 34.615 0.00 0.00 0.00 2.40
3401 3412 9.851686 TGAGTACCGTAATTAGTTAGGAAGATA 57.148 33.333 0.00 0.00 0.00 1.98
3403 3414 9.294614 AGTACCGTAATTAGTTAGGAAGATAGG 57.705 37.037 0.00 0.00 0.00 2.57
3404 3415 9.289782 GTACCGTAATTAGTTAGGAAGATAGGA 57.710 37.037 0.00 0.00 0.00 2.94
3405 3416 8.953223 ACCGTAATTAGTTAGGAAGATAGGAT 57.047 34.615 0.00 0.00 0.00 3.24
3413 3424 7.999450 AGTTAGGAAGATAGGATAACGTAGG 57.001 40.000 0.00 0.00 32.82 3.18
3414 3425 7.753630 AGTTAGGAAGATAGGATAACGTAGGA 58.246 38.462 0.00 0.00 32.82 2.94
3415 3426 8.392479 AGTTAGGAAGATAGGATAACGTAGGAT 58.608 37.037 0.00 0.00 32.82 3.24
3416 3427 9.022884 GTTAGGAAGATAGGATAACGTAGGATT 57.977 37.037 0.00 0.00 0.00 3.01
3417 3428 9.597681 TTAGGAAGATAGGATAACGTAGGATTT 57.402 33.333 0.00 0.00 0.00 2.17
3419 3430 9.771140 AGGAAGATAGGATAACGTAGGATTTAT 57.229 33.333 0.00 0.00 0.00 1.40
3426 3437 8.953223 AGGATAACGTAGGATTTATTCTACCT 57.047 34.615 3.20 0.00 34.07 3.08
3427 3438 9.377238 AGGATAACGTAGGATTTATTCTACCTT 57.623 33.333 3.20 1.62 34.07 3.50
3428 3439 9.420551 GGATAACGTAGGATTTATTCTACCTTG 57.579 37.037 3.20 0.00 34.07 3.61
3429 3440 9.978044 GATAACGTAGGATTTATTCTACCTTGT 57.022 33.333 3.20 0.00 34.07 3.16
3430 3441 9.978044 ATAACGTAGGATTTATTCTACCTTGTC 57.022 33.333 3.20 0.00 34.07 3.18
3431 3442 7.657023 ACGTAGGATTTATTCTACCTTGTCT 57.343 36.000 3.20 0.00 34.07 3.41
3432 3443 8.075761 ACGTAGGATTTATTCTACCTTGTCTT 57.924 34.615 3.20 0.00 34.07 3.01
3433 3444 7.980099 ACGTAGGATTTATTCTACCTTGTCTTG 59.020 37.037 3.20 0.00 34.07 3.02
3434 3445 7.980099 CGTAGGATTTATTCTACCTTGTCTTGT 59.020 37.037 3.20 0.00 34.07 3.16
3437 3448 9.047947 AGGATTTATTCTACCTTGTCTTGTACT 57.952 33.333 0.00 0.00 0.00 2.73
3438 3449 9.315525 GGATTTATTCTACCTTGTCTTGTACTC 57.684 37.037 0.00 0.00 0.00 2.59
3439 3450 9.315525 GATTTATTCTACCTTGTCTTGTACTCC 57.684 37.037 0.00 0.00 0.00 3.85
3440 3451 7.786046 TTATTCTACCTTGTCTTGTACTCCA 57.214 36.000 0.00 0.00 0.00 3.86
3441 3452 6.681729 ATTCTACCTTGTCTTGTACTCCAA 57.318 37.500 0.00 0.00 0.00 3.53
3454 3465 7.295952 CTTGTACTCCAAGTTGATCATGTAC 57.704 40.000 3.87 9.78 44.64 2.90
3455 3466 6.605471 TGTACTCCAAGTTGATCATGTACT 57.395 37.500 3.87 0.00 32.76 2.73
3456 3467 6.631016 TGTACTCCAAGTTGATCATGTACTC 58.369 40.000 3.87 0.00 32.76 2.59
3457 3468 5.091261 ACTCCAAGTTGATCATGTACTCC 57.909 43.478 3.87 0.00 0.00 3.85
3458 3469 4.780021 ACTCCAAGTTGATCATGTACTCCT 59.220 41.667 3.87 0.00 0.00 3.69
3459 3470 5.958380 ACTCCAAGTTGATCATGTACTCCTA 59.042 40.000 3.87 0.00 0.00 2.94
3460 3471 6.613271 ACTCCAAGTTGATCATGTACTCCTAT 59.387 38.462 3.87 0.00 0.00 2.57
3461 3472 7.785028 ACTCCAAGTTGATCATGTACTCCTATA 59.215 37.037 3.87 0.00 0.00 1.31
3462 3473 8.727100 TCCAAGTTGATCATGTACTCCTATAT 57.273 34.615 3.87 0.00 0.00 0.86
3463 3474 9.822727 TCCAAGTTGATCATGTACTCCTATATA 57.177 33.333 3.87 0.00 0.00 0.86
3470 3481 8.515414 TGATCATGTACTCCTATATATATGCGC 58.485 37.037 0.00 0.00 0.00 6.09
3471 3482 7.817418 TCATGTACTCCTATATATATGCGCA 57.183 36.000 14.96 14.96 0.00 6.09
3472 3483 7.649057 TCATGTACTCCTATATATATGCGCAC 58.351 38.462 14.90 0.00 0.00 5.34
3473 3484 7.284489 TCATGTACTCCTATATATATGCGCACA 59.716 37.037 14.90 0.00 0.00 4.57
3474 3485 7.399245 TGTACTCCTATATATATGCGCACAA 57.601 36.000 14.90 3.92 0.00 3.33
3475 3486 7.480810 TGTACTCCTATATATATGCGCACAAG 58.519 38.462 14.90 0.00 0.00 3.16
3476 3487 5.352284 ACTCCTATATATATGCGCACAAGC 58.648 41.667 14.90 0.00 37.71 4.01
3477 3488 4.693283 TCCTATATATATGCGCACAAGCC 58.307 43.478 14.90 0.00 37.52 4.35
3478 3489 4.405680 TCCTATATATATGCGCACAAGCCT 59.594 41.667 14.90 0.00 37.52 4.58
3479 3490 4.747108 CCTATATATATGCGCACAAGCCTC 59.253 45.833 14.90 0.00 37.52 4.70
3480 3491 2.549064 ATATATGCGCACAAGCCTCA 57.451 45.000 14.90 0.00 37.52 3.86
3481 3492 2.323968 TATATGCGCACAAGCCTCAA 57.676 45.000 14.90 0.00 37.52 3.02
3482 3493 1.019673 ATATGCGCACAAGCCTCAAG 58.980 50.000 14.90 0.00 37.52 3.02
3483 3494 1.647545 TATGCGCACAAGCCTCAAGC 61.648 55.000 14.90 0.00 44.25 4.01
3530 3541 3.309265 CCCTCTCTACCCTTCTACAGTGT 60.309 52.174 0.00 0.00 0.00 3.55
3549 3560 2.634453 TGTCTTCTCCTCATGCAAGTCA 59.366 45.455 0.00 0.00 0.00 3.41
3605 3616 1.280421 AGCTTCAAGGTGATGGAGGTC 59.720 52.381 0.00 0.00 30.89 3.85
3606 3617 2.009042 GCTTCAAGGTGATGGAGGTCG 61.009 57.143 0.00 0.00 0.00 4.79
3607 3618 0.613260 TTCAAGGTGATGGAGGTCGG 59.387 55.000 0.00 0.00 0.00 4.79
3608 3619 0.544357 TCAAGGTGATGGAGGTCGGT 60.544 55.000 0.00 0.00 0.00 4.69
3609 3620 0.391661 CAAGGTGATGGAGGTCGGTG 60.392 60.000 0.00 0.00 0.00 4.94
3610 3621 0.836400 AAGGTGATGGAGGTCGGTGT 60.836 55.000 0.00 0.00 0.00 4.16
3611 3622 0.040646 AGGTGATGGAGGTCGGTGTA 59.959 55.000 0.00 0.00 0.00 2.90
3612 3623 0.899720 GGTGATGGAGGTCGGTGTAA 59.100 55.000 0.00 0.00 0.00 2.41
3613 3624 1.134788 GGTGATGGAGGTCGGTGTAAG 60.135 57.143 0.00 0.00 0.00 2.34
3614 3625 1.134788 GTGATGGAGGTCGGTGTAAGG 60.135 57.143 0.00 0.00 0.00 2.69
3615 3626 0.464452 GATGGAGGTCGGTGTAAGGG 59.536 60.000 0.00 0.00 0.00 3.95
3616 3627 1.623542 ATGGAGGTCGGTGTAAGGGC 61.624 60.000 0.00 0.00 0.00 5.19
3617 3628 2.288025 GGAGGTCGGTGTAAGGGCA 61.288 63.158 0.00 0.00 0.00 5.36
3618 3629 1.623542 GGAGGTCGGTGTAAGGGCAT 61.624 60.000 0.00 0.00 0.00 4.40
3619 3630 1.117150 GAGGTCGGTGTAAGGGCATA 58.883 55.000 0.00 0.00 0.00 3.14
3620 3631 1.692519 GAGGTCGGTGTAAGGGCATAT 59.307 52.381 0.00 0.00 0.00 1.78
3621 3632 2.104281 GAGGTCGGTGTAAGGGCATATT 59.896 50.000 0.00 0.00 0.00 1.28
3622 3633 2.508300 AGGTCGGTGTAAGGGCATATTT 59.492 45.455 0.00 0.00 0.00 1.40
3623 3634 2.876550 GGTCGGTGTAAGGGCATATTTC 59.123 50.000 0.00 0.00 0.00 2.17
3624 3635 3.433173 GGTCGGTGTAAGGGCATATTTCT 60.433 47.826 0.00 0.00 0.00 2.52
3625 3636 3.808174 GTCGGTGTAAGGGCATATTTCTC 59.192 47.826 0.00 0.00 0.00 2.87
3626 3637 3.139077 CGGTGTAAGGGCATATTTCTCC 58.861 50.000 0.00 0.00 0.00 3.71
3627 3638 3.487372 GGTGTAAGGGCATATTTCTCCC 58.513 50.000 0.00 0.00 40.36 4.30
3635 3646 5.717119 GGGCATATTTCTCCCTATATGGT 57.283 43.478 0.00 0.00 35.97 3.55
3636 3647 6.079712 GGGCATATTTCTCCCTATATGGTT 57.920 41.667 0.00 0.00 35.97 3.67
3637 3648 6.494059 GGGCATATTTCTCCCTATATGGTTT 58.506 40.000 0.00 0.00 35.97 3.27
3638 3649 6.954102 GGGCATATTTCTCCCTATATGGTTTT 59.046 38.462 0.00 0.00 35.97 2.43
3639 3650 7.093771 GGGCATATTTCTCCCTATATGGTTTTG 60.094 40.741 0.00 0.00 35.97 2.44
3640 3651 7.093771 GGCATATTTCTCCCTATATGGTTTTGG 60.094 40.741 0.00 0.00 35.97 3.28
3641 3652 7.451566 GCATATTTCTCCCTATATGGTTTTGGT 59.548 37.037 0.00 0.00 35.97 3.67
3642 3653 8.796475 CATATTTCTCCCTATATGGTTTTGGTG 58.204 37.037 0.00 0.00 33.22 4.17
3643 3654 6.395780 TTTCTCCCTATATGGTTTTGGTGA 57.604 37.500 0.00 0.00 0.00 4.02
3644 3655 6.590656 TTCTCCCTATATGGTTTTGGTGAT 57.409 37.500 0.00 0.00 0.00 3.06
3645 3656 6.590656 TCTCCCTATATGGTTTTGGTGATT 57.409 37.500 0.00 0.00 0.00 2.57
3646 3657 6.364701 TCTCCCTATATGGTTTTGGTGATTG 58.635 40.000 0.00 0.00 0.00 2.67
3647 3658 6.159575 TCTCCCTATATGGTTTTGGTGATTGA 59.840 38.462 0.00 0.00 0.00 2.57
3648 3659 6.921412 TCCCTATATGGTTTTGGTGATTGAT 58.079 36.000 0.00 0.00 0.00 2.57
3649 3660 6.777091 TCCCTATATGGTTTTGGTGATTGATG 59.223 38.462 0.00 0.00 0.00 3.07
3650 3661 6.777091 CCCTATATGGTTTTGGTGATTGATGA 59.223 38.462 0.00 0.00 0.00 2.92
3651 3662 7.255590 CCCTATATGGTTTTGGTGATTGATGAC 60.256 40.741 0.00 0.00 0.00 3.06
3652 3663 7.285172 CCTATATGGTTTTGGTGATTGATGACA 59.715 37.037 0.00 0.00 0.00 3.58
3653 3664 4.852134 TGGTTTTGGTGATTGATGACAG 57.148 40.909 0.00 0.00 0.00 3.51
3654 3665 4.214310 TGGTTTTGGTGATTGATGACAGT 58.786 39.130 0.00 0.00 0.00 3.55
3655 3666 4.037803 TGGTTTTGGTGATTGATGACAGTG 59.962 41.667 0.00 0.00 0.00 3.66
3656 3667 3.921119 TTTGGTGATTGATGACAGTGC 57.079 42.857 0.00 0.00 0.00 4.40
3657 3668 2.565046 TGGTGATTGATGACAGTGCA 57.435 45.000 0.00 0.00 0.00 4.57
3658 3669 3.076079 TGGTGATTGATGACAGTGCAT 57.924 42.857 0.00 0.00 0.00 3.96
3659 3670 3.423749 TGGTGATTGATGACAGTGCATT 58.576 40.909 0.00 0.00 0.00 3.56
3660 3671 3.827876 TGGTGATTGATGACAGTGCATTT 59.172 39.130 0.00 0.00 0.00 2.32
3661 3672 4.171005 GGTGATTGATGACAGTGCATTTG 58.829 43.478 0.00 0.00 0.00 2.32
3662 3673 3.611113 GTGATTGATGACAGTGCATTTGC 59.389 43.478 0.00 0.00 42.50 3.68
3663 3674 2.334971 TTGATGACAGTGCATTTGCG 57.665 45.000 0.00 0.00 45.83 4.85
3664 3675 0.522626 TGATGACAGTGCATTTGCGG 59.477 50.000 0.00 0.00 45.83 5.69
3665 3676 0.804364 GATGACAGTGCATTTGCGGA 59.196 50.000 0.00 0.00 45.83 5.54
3666 3677 0.523072 ATGACAGTGCATTTGCGGAC 59.477 50.000 0.00 0.00 45.83 4.79
3667 3678 0.534877 TGACAGTGCATTTGCGGACT 60.535 50.000 0.00 0.00 45.83 3.85
3668 3679 0.166814 GACAGTGCATTTGCGGACTC 59.833 55.000 0.00 0.00 45.83 3.36
3669 3680 0.534877 ACAGTGCATTTGCGGACTCA 60.535 50.000 0.00 0.00 45.83 3.41
3670 3681 0.110056 CAGTGCATTTGCGGACTCAC 60.110 55.000 0.00 0.00 45.83 3.51
3671 3682 1.210155 GTGCATTTGCGGACTCACC 59.790 57.895 0.00 0.00 45.83 4.02
3672 3683 1.228094 TGCATTTGCGGACTCACCA 60.228 52.632 0.00 0.00 45.83 4.17
3673 3684 0.608856 TGCATTTGCGGACTCACCAT 60.609 50.000 0.00 0.00 45.83 3.55
3674 3685 0.179156 GCATTTGCGGACTCACCATG 60.179 55.000 0.00 0.00 38.90 3.66
3675 3686 1.167851 CATTTGCGGACTCACCATGT 58.832 50.000 0.00 0.00 38.90 3.21
3676 3687 1.135603 CATTTGCGGACTCACCATGTG 60.136 52.381 0.00 0.00 38.90 3.21
3677 3688 1.514678 TTTGCGGACTCACCATGTGC 61.515 55.000 0.00 0.00 38.90 4.57
3678 3689 2.358615 GCGGACTCACCATGTGCA 60.359 61.111 0.00 0.00 38.90 4.57
3679 3690 1.746615 GCGGACTCACCATGTGCAT 60.747 57.895 0.00 0.00 38.90 3.96
3680 3691 1.308069 GCGGACTCACCATGTGCATT 61.308 55.000 0.00 0.00 38.90 3.56
3681 3692 0.448990 CGGACTCACCATGTGCATTG 59.551 55.000 0.00 0.00 38.90 2.82
3682 3693 1.825090 GGACTCACCATGTGCATTGA 58.175 50.000 0.00 0.00 38.79 2.57
3683 3694 1.741706 GGACTCACCATGTGCATTGAG 59.258 52.381 10.60 10.60 41.14 3.02
3684 3695 1.131883 GACTCACCATGTGCATTGAGC 59.868 52.381 11.62 4.34 39.33 4.26
3699 3710 6.555812 GCATTGAGCATTTCAGATATCTCA 57.444 37.500 1.03 0.00 44.79 3.27
3700 3711 7.147143 GCATTGAGCATTTCAGATATCTCAT 57.853 36.000 1.03 0.00 44.79 2.90
3701 3712 7.024171 GCATTGAGCATTTCAGATATCTCATG 58.976 38.462 1.03 6.94 44.79 3.07
3702 3713 7.308649 GCATTGAGCATTTCAGATATCTCATGT 60.309 37.037 1.03 0.00 44.79 3.21
3703 3714 7.725818 TTGAGCATTTCAGATATCTCATGTC 57.274 36.000 1.03 6.88 37.07 3.06
3704 3715 7.063934 TGAGCATTTCAGATATCTCATGTCT 57.936 36.000 1.03 7.29 0.00 3.41
3705 3716 8.186709 TGAGCATTTCAGATATCTCATGTCTA 57.813 34.615 1.03 0.00 0.00 2.59
3706 3717 8.305317 TGAGCATTTCAGATATCTCATGTCTAG 58.695 37.037 1.03 0.00 0.00 2.43
3707 3718 7.613585 AGCATTTCAGATATCTCATGTCTAGG 58.386 38.462 1.03 0.00 0.00 3.02
3708 3719 6.313411 GCATTTCAGATATCTCATGTCTAGGC 59.687 42.308 1.03 0.00 0.00 3.93
3709 3720 6.983906 TTTCAGATATCTCATGTCTAGGCA 57.016 37.500 0.00 0.00 0.00 4.75
3710 3721 7.550597 TTTCAGATATCTCATGTCTAGGCAT 57.449 36.000 3.33 3.33 0.00 4.40
3711 3722 8.655935 TTTCAGATATCTCATGTCTAGGCATA 57.344 34.615 10.05 0.00 0.00 3.14
3712 3723 8.655935 TTCAGATATCTCATGTCTAGGCATAA 57.344 34.615 10.05 0.00 0.00 1.90
3713 3724 8.291191 TCAGATATCTCATGTCTAGGCATAAG 57.709 38.462 10.05 5.14 0.00 1.73
3714 3725 8.112183 TCAGATATCTCATGTCTAGGCATAAGA 58.888 37.037 12.63 12.63 28.67 2.10
3715 3726 8.190122 CAGATATCTCATGTCTAGGCATAAGAC 58.810 40.741 12.51 0.65 43.04 3.01
3716 3727 4.837896 TCTCATGTCTAGGCATAAGACG 57.162 45.455 10.05 0.00 45.19 4.18
3717 3728 4.461198 TCTCATGTCTAGGCATAAGACGA 58.539 43.478 10.05 1.77 45.19 4.20
3718 3729 5.073428 TCTCATGTCTAGGCATAAGACGAT 58.927 41.667 10.05 0.00 45.19 3.73
3719 3730 5.536538 TCTCATGTCTAGGCATAAGACGATT 59.463 40.000 10.05 0.00 45.19 3.34
3720 3731 5.773575 TCATGTCTAGGCATAAGACGATTC 58.226 41.667 10.05 0.00 45.19 2.52
3721 3732 4.224715 TGTCTAGGCATAAGACGATTCG 57.775 45.455 4.14 4.14 45.19 3.34
3722 3733 3.004419 TGTCTAGGCATAAGACGATTCGG 59.996 47.826 11.29 0.00 45.19 4.30
3723 3734 3.004524 GTCTAGGCATAAGACGATTCGGT 59.995 47.826 11.29 0.00 34.50 4.69
3724 3735 2.225068 AGGCATAAGACGATTCGGTG 57.775 50.000 11.29 2.73 0.00 4.94
3725 3736 0.582005 GGCATAAGACGATTCGGTGC 59.418 55.000 11.29 11.41 0.00 5.01
3726 3737 0.582005 GCATAAGACGATTCGGTGCC 59.418 55.000 11.29 0.00 0.00 5.01
3727 3738 1.217882 CATAAGACGATTCGGTGCCC 58.782 55.000 11.29 0.00 0.00 5.36
3728 3739 0.106149 ATAAGACGATTCGGTGCCCC 59.894 55.000 11.29 0.00 0.00 5.80
3729 3740 0.974010 TAAGACGATTCGGTGCCCCT 60.974 55.000 11.29 0.00 0.00 4.79
3730 3741 2.202892 GACGATTCGGTGCCCCTC 60.203 66.667 11.29 0.00 0.00 4.30
3731 3742 4.143333 ACGATTCGGTGCCCCTCG 62.143 66.667 11.29 0.00 35.56 4.63
3732 3743 4.891727 CGATTCGGTGCCCCTCGG 62.892 72.222 0.00 0.00 0.00 4.63
3733 3744 3.467226 GATTCGGTGCCCCTCGGA 61.467 66.667 0.00 0.00 0.00 4.55
3734 3745 3.447025 GATTCGGTGCCCCTCGGAG 62.447 68.421 0.00 0.00 0.00 4.63
3738 3749 3.161450 GGTGCCCCTCGGAGCATA 61.161 66.667 0.00 0.00 41.86 3.14
3739 3750 2.520536 GGTGCCCCTCGGAGCATAT 61.521 63.158 0.00 0.00 41.86 1.78
3740 3751 1.004440 GTGCCCCTCGGAGCATATC 60.004 63.158 0.00 0.00 41.86 1.63
3741 3752 2.262915 GCCCCTCGGAGCATATCG 59.737 66.667 0.00 0.00 0.00 2.92
3742 3753 2.276116 GCCCCTCGGAGCATATCGA 61.276 63.158 0.00 0.00 0.00 3.59
3743 3754 1.816863 GCCCCTCGGAGCATATCGAA 61.817 60.000 0.00 0.00 34.87 3.71
3744 3755 0.244994 CCCCTCGGAGCATATCGAAG 59.755 60.000 0.00 0.00 34.87 3.79
3745 3756 1.248486 CCCTCGGAGCATATCGAAGA 58.752 55.000 0.00 0.00 45.75 2.87
3746 3757 1.068194 CCCTCGGAGCATATCGAAGAC 60.068 57.143 0.00 0.00 42.51 3.01
3747 3758 1.400371 CCTCGGAGCATATCGAAGACG 60.400 57.143 0.00 0.00 42.51 4.18
3748 3759 0.591659 TCGGAGCATATCGAAGACGG 59.408 55.000 0.00 0.00 42.51 4.79
3749 3760 1.004277 CGGAGCATATCGAAGACGGC 61.004 60.000 0.00 0.00 42.51 5.68
3750 3761 1.004277 GGAGCATATCGAAGACGGCG 61.004 60.000 4.80 4.80 42.51 6.46
3751 3762 1.004277 GAGCATATCGAAGACGGCGG 61.004 60.000 13.24 0.00 42.51 6.13
3752 3763 1.299926 GCATATCGAAGACGGCGGT 60.300 57.895 13.24 0.00 42.51 5.68
3753 3764 0.874607 GCATATCGAAGACGGCGGTT 60.875 55.000 13.24 3.73 42.51 4.44
3754 3765 1.567504 CATATCGAAGACGGCGGTTT 58.432 50.000 13.24 4.61 42.51 3.27
3755 3766 1.931172 CATATCGAAGACGGCGGTTTT 59.069 47.619 13.24 1.63 42.51 2.43
3756 3767 2.083167 TATCGAAGACGGCGGTTTTT 57.917 45.000 13.24 0.00 42.51 1.94
3757 3768 0.794473 ATCGAAGACGGCGGTTTTTC 59.206 50.000 13.24 8.24 42.51 2.29
3758 3769 0.249573 TCGAAGACGGCGGTTTTTCT 60.250 50.000 13.24 0.58 40.21 2.52
3759 3770 1.000385 TCGAAGACGGCGGTTTTTCTA 60.000 47.619 13.24 0.00 40.21 2.10
3760 3771 1.125566 CGAAGACGGCGGTTTTTCTAC 59.874 52.381 13.24 0.00 35.72 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.379907 ACTTCATCCCCACAAATGTCCT 59.620 45.455 0.00 0.00 0.00 3.85
831 832 0.559205 TCTCCGGGCATCCCTTACTA 59.441 55.000 0.00 0.00 42.67 1.82
1119 1120 5.335897 CCACCAAAATTGACGAATGAGTGAT 60.336 40.000 0.00 0.00 0.00 3.06
1568 1569 2.650116 AAGTCCTCTCGCCACGCAT 61.650 57.895 0.00 0.00 0.00 4.73
2810 2817 9.962783 CTGTGTAGTTAAAGAGTGGGTATATAC 57.037 37.037 4.14 4.14 0.00 1.47
2819 2826 5.342525 CAGCGTACTGTGTAGTTAAAGAGTG 59.657 44.000 0.00 0.00 39.22 3.51
2831 2838 1.375908 CCCATGCAGCGTACTGTGT 60.376 57.895 0.00 0.00 46.30 3.72
2883 2890 2.200067 GACTGGAGCGATGTGAATGAG 58.800 52.381 0.00 0.00 0.00 2.90
2891 2898 0.467384 AGATTGGGACTGGAGCGATG 59.533 55.000 0.00 0.00 0.00 3.84
2898 2905 4.651867 CCAGCAGATTGGGACTGG 57.348 61.111 0.00 0.00 43.45 4.00
2900 2907 0.323178 CTTGCCAGCAGATTGGGACT 60.323 55.000 0.00 0.00 38.38 3.85
2955 2962 4.016444 CTCTGGTTTTAGGCCAATTAGCA 58.984 43.478 5.01 2.41 35.32 3.49
2969 2976 1.002134 CACGGATGGCCTCTGGTTT 60.002 57.895 3.32 0.00 34.24 3.27
3042 3053 0.250338 AAACGGTCAGACTTGAGGGC 60.250 55.000 0.00 0.00 32.98 5.19
3079 3090 7.303182 TCCACCGTATAATTGAAGATGATCT 57.697 36.000 0.00 0.00 0.00 2.75
3091 3102 6.469410 TCTTCAAGTGTTTCCACCGTATAAT 58.531 36.000 0.00 0.00 42.88 1.28
3097 3108 3.853307 GCATTCTTCAAGTGTTTCCACCG 60.853 47.826 0.00 0.00 42.88 4.94
3100 3111 3.953612 AGTGCATTCTTCAAGTGTTTCCA 59.046 39.130 0.00 0.00 0.00 3.53
3101 3112 4.574599 AGTGCATTCTTCAAGTGTTTCC 57.425 40.909 0.00 0.00 0.00 3.13
3127 3138 1.963515 GGCACAAGGTCCAGACATTTT 59.036 47.619 0.00 0.00 32.51 1.82
3130 3141 0.037303 CAGGCACAAGGTCCAGACAT 59.963 55.000 0.00 0.00 0.00 3.06
3131 3142 1.344953 ACAGGCACAAGGTCCAGACA 61.345 55.000 0.00 0.00 0.00 3.41
3144 3155 3.610040 AATCACGATACTGAACAGGCA 57.390 42.857 6.76 0.00 0.00 4.75
3145 3156 4.683832 ACTAATCACGATACTGAACAGGC 58.316 43.478 6.76 0.00 0.00 4.85
3159 3170 9.863845 GCTATCCTATCTTTCCTAACTAATCAC 57.136 37.037 0.00 0.00 0.00 3.06
3227 3238 6.665695 TCGTGGGCATATATATAGGAGTACA 58.334 40.000 8.56 0.00 0.00 2.90
3228 3239 6.207025 CCTCGTGGGCATATATATAGGAGTAC 59.793 46.154 8.56 2.84 0.00 2.73
3229 3240 6.304624 CCTCGTGGGCATATATATAGGAGTA 58.695 44.000 8.56 0.00 0.00 2.59
3230 3241 5.141182 CCTCGTGGGCATATATATAGGAGT 58.859 45.833 8.56 0.00 0.00 3.85
3231 3242 5.713792 CCTCGTGGGCATATATATAGGAG 57.286 47.826 8.56 1.89 0.00 3.69
3247 3258 0.592637 TGCATTGTTTGAGCCTCGTG 59.407 50.000 0.00 0.00 0.00 4.35
3253 3264 6.147492 TGGAATTGTTATTGCATTGTTTGAGC 59.853 34.615 0.00 0.00 37.20 4.26
3259 3270 5.480642 TGGTGGAATTGTTATTGCATTGT 57.519 34.783 0.00 0.00 42.87 2.71
3262 3273 6.114767 GGATTTGGTGGAATTGTTATTGCAT 58.885 36.000 0.00 0.00 42.87 3.96
3263 3274 5.486526 GGATTTGGTGGAATTGTTATTGCA 58.513 37.500 0.00 0.00 39.43 4.08
3264 3275 4.875536 GGGATTTGGTGGAATTGTTATTGC 59.124 41.667 0.00 0.00 33.14 3.56
3265 3276 5.427378 GGGGATTTGGTGGAATTGTTATTG 58.573 41.667 0.00 0.00 0.00 1.90
3266 3277 4.473196 GGGGGATTTGGTGGAATTGTTATT 59.527 41.667 0.00 0.00 0.00 1.40
3267 3278 4.037222 GGGGGATTTGGTGGAATTGTTAT 58.963 43.478 0.00 0.00 0.00 1.89
3268 3279 3.078305 AGGGGGATTTGGTGGAATTGTTA 59.922 43.478 0.00 0.00 0.00 2.41
3269 3280 2.158019 AGGGGGATTTGGTGGAATTGTT 60.158 45.455 0.00 0.00 0.00 2.83
3270 3281 1.436752 AGGGGGATTTGGTGGAATTGT 59.563 47.619 0.00 0.00 0.00 2.71
3271 3282 2.110578 GAGGGGGATTTGGTGGAATTG 58.889 52.381 0.00 0.00 0.00 2.32
3272 3283 2.010699 AGAGGGGGATTTGGTGGAATT 58.989 47.619 0.00 0.00 0.00 2.17
3273 3284 1.698874 AGAGGGGGATTTGGTGGAAT 58.301 50.000 0.00 0.00 0.00 3.01
3274 3285 1.920351 GTAGAGGGGGATTTGGTGGAA 59.080 52.381 0.00 0.00 0.00 3.53
3275 3286 1.591768 GTAGAGGGGGATTTGGTGGA 58.408 55.000 0.00 0.00 0.00 4.02
3276 3287 0.551396 GGTAGAGGGGGATTTGGTGG 59.449 60.000 0.00 0.00 0.00 4.61
3277 3288 1.596496 AGGTAGAGGGGGATTTGGTG 58.404 55.000 0.00 0.00 0.00 4.17
3278 3289 2.378308 AAGGTAGAGGGGGATTTGGT 57.622 50.000 0.00 0.00 0.00 3.67
3279 3290 2.853077 AGAAAGGTAGAGGGGGATTTGG 59.147 50.000 0.00 0.00 0.00 3.28
3280 3291 5.913946 ATAGAAAGGTAGAGGGGGATTTG 57.086 43.478 0.00 0.00 0.00 2.32
3281 3292 6.505700 CCATATAGAAAGGTAGAGGGGGATTT 59.494 42.308 0.00 0.00 0.00 2.17
3282 3293 6.032693 CCATATAGAAAGGTAGAGGGGGATT 58.967 44.000 0.00 0.00 0.00 3.01
3283 3294 5.079429 ACCATATAGAAAGGTAGAGGGGGAT 59.921 44.000 0.00 0.00 32.92 3.85
3284 3295 4.426023 ACCATATAGAAAGGTAGAGGGGGA 59.574 45.833 0.00 0.00 32.92 4.81
3285 3296 4.764491 ACCATATAGAAAGGTAGAGGGGG 58.236 47.826 0.00 0.00 32.92 5.40
3286 3297 6.559157 AGAAACCATATAGAAAGGTAGAGGGG 59.441 42.308 0.00 0.00 34.63 4.79
3287 3298 7.619512 AGAAACCATATAGAAAGGTAGAGGG 57.380 40.000 0.00 0.00 34.63 4.30
3288 3299 9.984190 GTAAGAAACCATATAGAAAGGTAGAGG 57.016 37.037 0.00 0.00 34.63 3.69
3306 3317 7.162082 TGGAGAAGAATCAGAAGGTAAGAAAC 58.838 38.462 0.00 0.00 0.00 2.78
3307 3318 7.016661 ACTGGAGAAGAATCAGAAGGTAAGAAA 59.983 37.037 0.00 0.00 33.19 2.52
3308 3319 6.498651 ACTGGAGAAGAATCAGAAGGTAAGAA 59.501 38.462 0.00 0.00 33.19 2.52
3309 3320 6.019748 ACTGGAGAAGAATCAGAAGGTAAGA 58.980 40.000 0.00 0.00 33.19 2.10
3310 3321 6.154363 AGACTGGAGAAGAATCAGAAGGTAAG 59.846 42.308 0.00 0.00 33.19 2.34
3311 3322 6.019748 AGACTGGAGAAGAATCAGAAGGTAA 58.980 40.000 0.00 0.00 33.19 2.85
3312 3323 5.584913 AGACTGGAGAAGAATCAGAAGGTA 58.415 41.667 0.00 0.00 33.19 3.08
3313 3324 4.424842 AGACTGGAGAAGAATCAGAAGGT 58.575 43.478 0.00 0.00 33.19 3.50
3314 3325 4.465660 TGAGACTGGAGAAGAATCAGAAGG 59.534 45.833 0.00 0.00 33.19 3.46
3315 3326 5.185635 ACTGAGACTGGAGAAGAATCAGAAG 59.814 44.000 14.20 0.00 40.99 2.85
3316 3327 5.083122 ACTGAGACTGGAGAAGAATCAGAA 58.917 41.667 14.20 0.00 40.99 3.02
3317 3328 4.671831 ACTGAGACTGGAGAAGAATCAGA 58.328 43.478 14.20 0.00 40.99 3.27
3318 3329 6.547141 AGATACTGAGACTGGAGAAGAATCAG 59.453 42.308 0.00 0.00 42.60 2.90
3319 3330 6.320926 CAGATACTGAGACTGGAGAAGAATCA 59.679 42.308 0.00 0.00 32.44 2.57
3320 3331 6.735694 GCAGATACTGAGACTGGAGAAGAATC 60.736 46.154 2.81 0.00 32.44 2.52
3321 3332 5.068987 GCAGATACTGAGACTGGAGAAGAAT 59.931 44.000 2.81 0.00 32.44 2.40
3322 3333 4.400884 GCAGATACTGAGACTGGAGAAGAA 59.599 45.833 2.81 0.00 32.44 2.52
3323 3334 3.951037 GCAGATACTGAGACTGGAGAAGA 59.049 47.826 2.81 0.00 32.44 2.87
3324 3335 3.698539 TGCAGATACTGAGACTGGAGAAG 59.301 47.826 2.81 0.00 32.44 2.85
3325 3336 3.701664 TGCAGATACTGAGACTGGAGAA 58.298 45.455 2.81 0.00 32.44 2.87
3326 3337 3.372440 TGCAGATACTGAGACTGGAGA 57.628 47.619 2.81 0.00 32.44 3.71
3327 3338 3.005684 GGATGCAGATACTGAGACTGGAG 59.994 52.174 2.81 0.00 35.70 3.86
3328 3339 2.961741 GGATGCAGATACTGAGACTGGA 59.038 50.000 2.81 0.00 36.55 3.86
3329 3340 2.036992 GGGATGCAGATACTGAGACTGG 59.963 54.545 2.81 0.00 32.44 4.00
3330 3341 2.964464 AGGGATGCAGATACTGAGACTG 59.036 50.000 2.81 0.00 32.44 3.51
3331 3342 3.326946 AGGGATGCAGATACTGAGACT 57.673 47.619 2.81 0.00 32.44 3.24
3332 3343 3.257127 GGTAGGGATGCAGATACTGAGAC 59.743 52.174 2.81 0.00 32.44 3.36
3333 3344 3.117131 TGGTAGGGATGCAGATACTGAGA 60.117 47.826 2.81 0.00 32.44 3.27
3334 3345 3.234353 TGGTAGGGATGCAGATACTGAG 58.766 50.000 2.81 0.00 32.44 3.35
3335 3346 3.328535 TGGTAGGGATGCAGATACTGA 57.671 47.619 2.81 0.00 32.44 3.41
3336 3347 4.202398 ACAATGGTAGGGATGCAGATACTG 60.202 45.833 0.00 0.00 34.12 2.74
3337 3348 3.976654 ACAATGGTAGGGATGCAGATACT 59.023 43.478 0.00 0.00 0.00 2.12
3338 3349 4.357918 ACAATGGTAGGGATGCAGATAC 57.642 45.455 0.00 0.00 0.00 2.24
3339 3350 6.702449 ATAACAATGGTAGGGATGCAGATA 57.298 37.500 0.00 0.00 0.00 1.98
3340 3351 3.959495 AACAATGGTAGGGATGCAGAT 57.041 42.857 0.00 0.00 0.00 2.90
3341 3352 5.132502 CAATAACAATGGTAGGGATGCAGA 58.867 41.667 0.00 0.00 0.00 4.26
3342 3353 4.261741 GCAATAACAATGGTAGGGATGCAG 60.262 45.833 0.00 0.00 0.00 4.41
3343 3354 3.636300 GCAATAACAATGGTAGGGATGCA 59.364 43.478 0.00 0.00 0.00 3.96
3344 3355 3.304659 CGCAATAACAATGGTAGGGATGC 60.305 47.826 0.00 0.00 0.00 3.91
3345 3356 3.253188 CCGCAATAACAATGGTAGGGATG 59.747 47.826 0.00 0.00 0.00 3.51
3346 3357 3.486383 CCGCAATAACAATGGTAGGGAT 58.514 45.455 0.00 0.00 0.00 3.85
3347 3358 2.422235 CCCGCAATAACAATGGTAGGGA 60.422 50.000 0.00 0.00 38.62 4.20
3348 3359 1.953686 CCCGCAATAACAATGGTAGGG 59.046 52.381 0.00 0.00 0.00 3.53
3349 3360 1.953686 CCCCGCAATAACAATGGTAGG 59.046 52.381 0.00 0.00 0.00 3.18
3350 3361 2.357637 CACCCCGCAATAACAATGGTAG 59.642 50.000 0.00 0.00 0.00 3.18
3351 3362 2.291024 ACACCCCGCAATAACAATGGTA 60.291 45.455 0.00 0.00 0.00 3.25
3352 3363 1.181786 CACCCCGCAATAACAATGGT 58.818 50.000 0.00 0.00 0.00 3.55
3353 3364 1.135141 CACACCCCGCAATAACAATGG 60.135 52.381 0.00 0.00 0.00 3.16
3354 3365 1.543802 ACACACCCCGCAATAACAATG 59.456 47.619 0.00 0.00 0.00 2.82
3355 3366 1.917872 ACACACCCCGCAATAACAAT 58.082 45.000 0.00 0.00 0.00 2.71
3356 3367 1.338337 CAACACACCCCGCAATAACAA 59.662 47.619 0.00 0.00 0.00 2.83
3357 3368 0.955178 CAACACACCCCGCAATAACA 59.045 50.000 0.00 0.00 0.00 2.41
3358 3369 1.199097 CTCAACACACCCCGCAATAAC 59.801 52.381 0.00 0.00 0.00 1.89
3359 3370 1.202830 ACTCAACACACCCCGCAATAA 60.203 47.619 0.00 0.00 0.00 1.40
3360 3371 0.398696 ACTCAACACACCCCGCAATA 59.601 50.000 0.00 0.00 0.00 1.90
3361 3372 0.398696 TACTCAACACACCCCGCAAT 59.601 50.000 0.00 0.00 0.00 3.56
3362 3373 0.533308 GTACTCAACACACCCCGCAA 60.533 55.000 0.00 0.00 0.00 4.85
3363 3374 1.070105 GTACTCAACACACCCCGCA 59.930 57.895 0.00 0.00 0.00 5.69
3364 3375 1.670083 GGTACTCAACACACCCCGC 60.670 63.158 0.00 0.00 0.00 6.13
3365 3376 1.373748 CGGTACTCAACACACCCCG 60.374 63.158 0.00 0.00 0.00 5.73
3366 3377 0.968405 TACGGTACTCAACACACCCC 59.032 55.000 0.00 0.00 0.00 4.95
3367 3378 2.818130 TTACGGTACTCAACACACCC 57.182 50.000 0.00 0.00 0.00 4.61
3368 3379 5.473039 ACTAATTACGGTACTCAACACACC 58.527 41.667 0.00 0.00 0.00 4.16
3369 3380 7.274250 CCTAACTAATTACGGTACTCAACACAC 59.726 40.741 0.00 0.00 0.00 3.82
3370 3381 7.176515 TCCTAACTAATTACGGTACTCAACACA 59.823 37.037 0.00 0.00 0.00 3.72
3371 3382 7.538575 TCCTAACTAATTACGGTACTCAACAC 58.461 38.462 0.00 0.00 0.00 3.32
3372 3383 7.701539 TCCTAACTAATTACGGTACTCAACA 57.298 36.000 0.00 0.00 0.00 3.33
3373 3384 8.462016 TCTTCCTAACTAATTACGGTACTCAAC 58.538 37.037 0.00 0.00 0.00 3.18
3374 3385 8.579850 TCTTCCTAACTAATTACGGTACTCAA 57.420 34.615 0.00 0.00 0.00 3.02
3375 3386 8.757982 ATCTTCCTAACTAATTACGGTACTCA 57.242 34.615 0.00 0.00 0.00 3.41
3377 3388 9.294614 CCTATCTTCCTAACTAATTACGGTACT 57.705 37.037 0.00 0.00 0.00 2.73
3378 3389 9.289782 TCCTATCTTCCTAACTAATTACGGTAC 57.710 37.037 0.00 0.00 0.00 3.34
3380 3391 8.953223 ATCCTATCTTCCTAACTAATTACGGT 57.047 34.615 0.00 0.00 0.00 4.83
3387 3398 9.512588 CCTACGTTATCCTATCTTCCTAACTAA 57.487 37.037 0.00 0.00 0.00 2.24
3388 3399 8.884323 TCCTACGTTATCCTATCTTCCTAACTA 58.116 37.037 0.00 0.00 0.00 2.24
3389 3400 7.753630 TCCTACGTTATCCTATCTTCCTAACT 58.246 38.462 0.00 0.00 0.00 2.24
3390 3401 7.992754 TCCTACGTTATCCTATCTTCCTAAC 57.007 40.000 0.00 0.00 0.00 2.34
3391 3402 9.597681 AAATCCTACGTTATCCTATCTTCCTAA 57.402 33.333 0.00 0.00 0.00 2.69
3393 3404 9.771140 ATAAATCCTACGTTATCCTATCTTCCT 57.229 33.333 0.00 0.00 0.00 3.36
3401 3412 8.953223 AGGTAGAATAAATCCTACGTTATCCT 57.047 34.615 0.00 0.00 36.89 3.24
3402 3413 9.420551 CAAGGTAGAATAAATCCTACGTTATCC 57.579 37.037 0.00 0.00 40.09 2.59
3403 3414 9.978044 ACAAGGTAGAATAAATCCTACGTTATC 57.022 33.333 0.00 0.00 40.09 1.75
3404 3415 9.978044 GACAAGGTAGAATAAATCCTACGTTAT 57.022 33.333 0.00 0.00 40.09 1.89
3405 3416 9.193806 AGACAAGGTAGAATAAATCCTACGTTA 57.806 33.333 0.00 0.00 40.09 3.18
3406 3417 8.075761 AGACAAGGTAGAATAAATCCTACGTT 57.924 34.615 0.00 0.00 41.67 3.99
3407 3418 7.657023 AGACAAGGTAGAATAAATCCTACGT 57.343 36.000 0.00 0.00 36.89 3.57
3408 3419 7.980099 ACAAGACAAGGTAGAATAAATCCTACG 59.020 37.037 0.00 0.00 36.89 3.51
3411 3422 9.047947 AGTACAAGACAAGGTAGAATAAATCCT 57.952 33.333 0.00 0.00 0.00 3.24
3412 3423 9.315525 GAGTACAAGACAAGGTAGAATAAATCC 57.684 37.037 0.00 0.00 0.00 3.01
3413 3424 9.315525 GGAGTACAAGACAAGGTAGAATAAATC 57.684 37.037 0.00 0.00 0.00 2.17
3414 3425 8.822805 TGGAGTACAAGACAAGGTAGAATAAAT 58.177 33.333 0.00 0.00 0.00 1.40
3415 3426 8.197592 TGGAGTACAAGACAAGGTAGAATAAA 57.802 34.615 0.00 0.00 0.00 1.40
3416 3427 7.786046 TGGAGTACAAGACAAGGTAGAATAA 57.214 36.000 0.00 0.00 0.00 1.40
3417 3428 7.786046 TTGGAGTACAAGACAAGGTAGAATA 57.214 36.000 0.00 0.00 33.18 1.75
3418 3429 6.681729 TTGGAGTACAAGACAAGGTAGAAT 57.318 37.500 0.00 0.00 33.18 2.40
3431 3442 7.004555 AGTACATGATCAACTTGGAGTACAA 57.995 36.000 0.00 0.00 37.55 2.41
3432 3443 6.351033 GGAGTACATGATCAACTTGGAGTACA 60.351 42.308 0.00 0.00 0.00 2.90
3433 3444 6.043411 GGAGTACATGATCAACTTGGAGTAC 58.957 44.000 0.00 5.02 0.00 2.73
3434 3445 5.958380 AGGAGTACATGATCAACTTGGAGTA 59.042 40.000 0.00 0.00 0.00 2.59
3435 3446 4.780021 AGGAGTACATGATCAACTTGGAGT 59.220 41.667 0.00 0.00 0.00 3.85
3436 3447 5.350504 AGGAGTACATGATCAACTTGGAG 57.649 43.478 0.00 0.00 0.00 3.86
3437 3448 8.727100 ATATAGGAGTACATGATCAACTTGGA 57.273 34.615 0.00 0.00 0.00 3.53
3444 3455 8.515414 GCGCATATATATAGGAGTACATGATCA 58.485 37.037 8.56 0.00 0.00 2.92
3445 3456 8.515414 TGCGCATATATATAGGAGTACATGATC 58.485 37.037 5.66 0.00 0.00 2.92
3446 3457 8.300286 GTGCGCATATATATAGGAGTACATGAT 58.700 37.037 15.91 0.00 32.11 2.45
3447 3458 7.284489 TGTGCGCATATATATAGGAGTACATGA 59.716 37.037 21.37 6.07 35.50 3.07
3448 3459 7.425606 TGTGCGCATATATATAGGAGTACATG 58.574 38.462 21.37 5.92 35.50 3.21
3449 3460 7.582667 TGTGCGCATATATATAGGAGTACAT 57.417 36.000 21.37 0.00 35.50 2.29
3450 3461 7.399245 TTGTGCGCATATATATAGGAGTACA 57.601 36.000 21.37 21.37 37.57 2.90
3451 3462 6.418226 GCTTGTGCGCATATATATAGGAGTAC 59.582 42.308 15.91 17.71 32.34 2.73
3452 3463 6.461092 GGCTTGTGCGCATATATATAGGAGTA 60.461 42.308 15.91 1.87 40.82 2.59
3453 3464 5.352284 GCTTGTGCGCATATATATAGGAGT 58.648 41.667 15.91 0.00 0.00 3.85
3454 3465 4.747108 GGCTTGTGCGCATATATATAGGAG 59.253 45.833 15.91 3.31 40.82 3.69
3455 3466 4.405680 AGGCTTGTGCGCATATATATAGGA 59.594 41.667 15.91 0.00 40.82 2.94
3456 3467 4.697514 AGGCTTGTGCGCATATATATAGG 58.302 43.478 15.91 0.00 40.82 2.57
3457 3468 5.351458 TGAGGCTTGTGCGCATATATATAG 58.649 41.667 15.91 5.82 40.82 1.31
3458 3469 5.337578 TGAGGCTTGTGCGCATATATATA 57.662 39.130 15.91 0.00 40.82 0.86
3459 3470 4.206477 TGAGGCTTGTGCGCATATATAT 57.794 40.909 15.91 0.00 40.82 0.86
3460 3471 3.676291 TGAGGCTTGTGCGCATATATA 57.324 42.857 15.91 0.00 40.82 0.86
3461 3472 2.549064 TGAGGCTTGTGCGCATATAT 57.451 45.000 15.91 0.00 40.82 0.86
3462 3473 2.212652 CTTGAGGCTTGTGCGCATATA 58.787 47.619 15.91 0.00 40.82 0.86
3463 3474 1.019673 CTTGAGGCTTGTGCGCATAT 58.980 50.000 15.91 0.00 40.82 1.78
3464 3475 1.647545 GCTTGAGGCTTGTGCGCATA 61.648 55.000 15.91 8.59 40.82 3.14
3465 3476 2.986306 GCTTGAGGCTTGTGCGCAT 61.986 57.895 15.91 0.00 40.82 4.73
3466 3477 3.663176 GCTTGAGGCTTGTGCGCA 61.663 61.111 5.66 5.66 40.82 6.09
3467 3478 2.482296 ATTGCTTGAGGCTTGTGCGC 62.482 55.000 0.00 0.00 42.39 6.09
3468 3479 0.804364 TATTGCTTGAGGCTTGTGCG 59.196 50.000 0.00 0.00 42.39 5.34
3469 3480 1.541147 TGTATTGCTTGAGGCTTGTGC 59.459 47.619 0.00 0.00 42.39 4.57
3470 3481 3.004629 TGTTGTATTGCTTGAGGCTTGTG 59.995 43.478 0.00 0.00 42.39 3.33
3471 3482 3.221771 TGTTGTATTGCTTGAGGCTTGT 58.778 40.909 0.00 0.00 42.39 3.16
3472 3483 3.921119 TGTTGTATTGCTTGAGGCTTG 57.079 42.857 0.00 0.00 42.39 4.01
3473 3484 3.636300 TGTTGTTGTATTGCTTGAGGCTT 59.364 39.130 0.00 0.00 42.39 4.35
3474 3485 3.221771 TGTTGTTGTATTGCTTGAGGCT 58.778 40.909 0.00 0.00 42.39 4.58
3475 3486 3.641437 TGTTGTTGTATTGCTTGAGGC 57.359 42.857 0.00 0.00 42.22 4.70
3476 3487 6.700960 TGAAATTGTTGTTGTATTGCTTGAGG 59.299 34.615 0.00 0.00 0.00 3.86
3477 3488 7.306749 GGTGAAATTGTTGTTGTATTGCTTGAG 60.307 37.037 0.00 0.00 0.00 3.02
3478 3489 6.478344 GGTGAAATTGTTGTTGTATTGCTTGA 59.522 34.615 0.00 0.00 0.00 3.02
3479 3490 6.257411 TGGTGAAATTGTTGTTGTATTGCTTG 59.743 34.615 0.00 0.00 0.00 4.01
3480 3491 6.344500 TGGTGAAATTGTTGTTGTATTGCTT 58.656 32.000 0.00 0.00 0.00 3.91
3481 3492 5.911752 TGGTGAAATTGTTGTTGTATTGCT 58.088 33.333 0.00 0.00 0.00 3.91
3482 3493 6.595772 TTGGTGAAATTGTTGTTGTATTGC 57.404 33.333 0.00 0.00 0.00 3.56
3483 3494 8.281893 GGATTTGGTGAAATTGTTGTTGTATTG 58.718 33.333 0.00 0.00 31.58 1.90
3484 3495 7.443879 GGGATTTGGTGAAATTGTTGTTGTATT 59.556 33.333 0.00 0.00 31.58 1.89
3530 3541 4.040829 TCTTTGACTTGCATGAGGAGAAGA 59.959 41.667 6.60 5.80 0.00 2.87
3549 3560 9.125026 AGAGATGAGTTAAATGTTGTTGTCTTT 57.875 29.630 0.00 0.00 0.00 2.52
3605 3616 3.139077 GGAGAAATATGCCCTTACACCG 58.861 50.000 0.00 0.00 0.00 4.94
3606 3617 3.487372 GGGAGAAATATGCCCTTACACC 58.513 50.000 0.00 0.00 38.85 4.16
3613 3624 5.717119 ACCATATAGGGAGAAATATGCCC 57.283 43.478 11.11 0.00 43.89 5.36
3614 3625 7.093771 CCAAAACCATATAGGGAGAAATATGCC 60.094 40.741 11.11 0.00 43.89 4.40
3615 3626 7.451566 ACCAAAACCATATAGGGAGAAATATGC 59.548 37.037 11.11 0.00 43.89 3.14
3616 3627 8.796475 CACCAAAACCATATAGGGAGAAATATG 58.204 37.037 11.11 0.00 43.89 1.78
3617 3628 8.732854 TCACCAAAACCATATAGGGAGAAATAT 58.267 33.333 11.11 0.00 43.89 1.28
3618 3629 8.108378 TCACCAAAACCATATAGGGAGAAATA 57.892 34.615 11.11 0.00 43.89 1.40
3619 3630 6.980577 TCACCAAAACCATATAGGGAGAAAT 58.019 36.000 11.11 0.00 43.89 2.17
3620 3631 6.395780 TCACCAAAACCATATAGGGAGAAA 57.604 37.500 11.11 0.00 43.89 2.52
3621 3632 6.590656 ATCACCAAAACCATATAGGGAGAA 57.409 37.500 11.11 0.00 43.89 2.87
3622 3633 6.159575 TCAATCACCAAAACCATATAGGGAGA 59.840 38.462 11.11 0.00 43.89 3.71
3623 3634 6.364701 TCAATCACCAAAACCATATAGGGAG 58.635 40.000 11.11 0.00 43.89 4.30
3624 3635 6.334378 TCAATCACCAAAACCATATAGGGA 57.666 37.500 11.11 0.00 43.89 4.20
3625 3636 6.777091 TCATCAATCACCAAAACCATATAGGG 59.223 38.462 0.82 0.82 43.89 3.53
3626 3637 7.285172 TGTCATCAATCACCAAAACCATATAGG 59.715 37.037 0.00 0.00 45.67 2.57
3627 3638 8.224389 TGTCATCAATCACCAAAACCATATAG 57.776 34.615 0.00 0.00 0.00 1.31
3628 3639 7.833682 ACTGTCATCAATCACCAAAACCATATA 59.166 33.333 0.00 0.00 0.00 0.86
3629 3640 6.664816 ACTGTCATCAATCACCAAAACCATAT 59.335 34.615 0.00 0.00 0.00 1.78
3630 3641 6.009589 ACTGTCATCAATCACCAAAACCATA 58.990 36.000 0.00 0.00 0.00 2.74
3631 3642 4.834496 ACTGTCATCAATCACCAAAACCAT 59.166 37.500 0.00 0.00 0.00 3.55
3632 3643 4.037803 CACTGTCATCAATCACCAAAACCA 59.962 41.667 0.00 0.00 0.00 3.67
3633 3644 4.549458 CACTGTCATCAATCACCAAAACC 58.451 43.478 0.00 0.00 0.00 3.27
3634 3645 3.983344 GCACTGTCATCAATCACCAAAAC 59.017 43.478 0.00 0.00 0.00 2.43
3635 3646 3.635836 TGCACTGTCATCAATCACCAAAA 59.364 39.130 0.00 0.00 0.00 2.44
3636 3647 3.220940 TGCACTGTCATCAATCACCAAA 58.779 40.909 0.00 0.00 0.00 3.28
3637 3648 2.861274 TGCACTGTCATCAATCACCAA 58.139 42.857 0.00 0.00 0.00 3.67
3638 3649 2.565046 TGCACTGTCATCAATCACCA 57.435 45.000 0.00 0.00 0.00 4.17
3639 3650 4.171005 CAAATGCACTGTCATCAATCACC 58.829 43.478 0.00 0.00 0.00 4.02
3640 3651 3.611113 GCAAATGCACTGTCATCAATCAC 59.389 43.478 0.00 0.00 41.59 3.06
3641 3652 3.671164 CGCAAATGCACTGTCATCAATCA 60.671 43.478 6.18 0.00 42.21 2.57
3642 3653 2.850060 CGCAAATGCACTGTCATCAATC 59.150 45.455 6.18 0.00 42.21 2.67
3643 3654 2.416296 CCGCAAATGCACTGTCATCAAT 60.416 45.455 6.18 0.00 42.21 2.57
3644 3655 1.068402 CCGCAAATGCACTGTCATCAA 60.068 47.619 6.18 0.00 42.21 2.57
3645 3656 0.522626 CCGCAAATGCACTGTCATCA 59.477 50.000 6.18 0.00 42.21 3.07
3646 3657 0.804364 TCCGCAAATGCACTGTCATC 59.196 50.000 6.18 0.00 42.21 2.92
3647 3658 0.523072 GTCCGCAAATGCACTGTCAT 59.477 50.000 6.18 0.00 42.21 3.06
3648 3659 0.534877 AGTCCGCAAATGCACTGTCA 60.535 50.000 6.18 0.00 42.21 3.58
3649 3660 0.166814 GAGTCCGCAAATGCACTGTC 59.833 55.000 6.18 0.00 42.21 3.51
3650 3661 0.534877 TGAGTCCGCAAATGCACTGT 60.535 50.000 6.18 0.00 42.21 3.55
3651 3662 0.110056 GTGAGTCCGCAAATGCACTG 60.110 55.000 6.18 0.00 42.21 3.66
3652 3663 1.237285 GGTGAGTCCGCAAATGCACT 61.237 55.000 6.18 2.18 42.21 4.40
3653 3664 1.210155 GGTGAGTCCGCAAATGCAC 59.790 57.895 6.18 0.00 42.21 4.57
3654 3665 0.608856 ATGGTGAGTCCGCAAATGCA 60.609 50.000 6.18 0.00 42.21 3.96
3655 3666 0.179156 CATGGTGAGTCCGCAAATGC 60.179 55.000 0.00 0.00 39.52 3.56
3656 3667 1.135603 CACATGGTGAGTCCGCAAATG 60.136 52.381 0.00 0.00 39.52 2.32
3657 3668 1.167851 CACATGGTGAGTCCGCAAAT 58.832 50.000 0.00 0.00 39.52 2.32
3658 3669 1.514678 GCACATGGTGAGTCCGCAAA 61.515 55.000 0.00 0.00 39.52 3.68
3659 3670 1.965930 GCACATGGTGAGTCCGCAA 60.966 57.895 0.00 0.00 39.52 4.85
3660 3671 2.358615 GCACATGGTGAGTCCGCA 60.359 61.111 0.00 0.00 39.52 5.69
3661 3672 1.308069 AATGCACATGGTGAGTCCGC 61.308 55.000 0.00 0.00 39.52 5.54
3662 3673 0.448990 CAATGCACATGGTGAGTCCG 59.551 55.000 0.00 0.00 39.52 4.79
3663 3674 1.741706 CTCAATGCACATGGTGAGTCC 59.258 52.381 0.00 0.00 35.23 3.85
3664 3675 1.131883 GCTCAATGCACATGGTGAGTC 59.868 52.381 11.88 3.91 39.75 3.36
3665 3676 1.171308 GCTCAATGCACATGGTGAGT 58.829 50.000 11.88 0.00 39.75 3.41
3676 3687 6.555812 TGAGATATCTGAAATGCTCAATGC 57.444 37.500 10.74 0.00 43.25 3.56
3677 3688 8.100508 ACATGAGATATCTGAAATGCTCAATG 57.899 34.615 10.74 0.00 36.17 2.82
3678 3689 8.158132 AGACATGAGATATCTGAAATGCTCAAT 58.842 33.333 10.74 0.00 36.17 2.57
3679 3690 7.506971 AGACATGAGATATCTGAAATGCTCAA 58.493 34.615 10.74 0.00 36.17 3.02
3680 3691 7.063934 AGACATGAGATATCTGAAATGCTCA 57.936 36.000 10.74 0.00 36.88 4.26
3681 3692 7.760794 CCTAGACATGAGATATCTGAAATGCTC 59.239 40.741 10.74 10.50 0.00 4.26
3682 3693 7.613585 CCTAGACATGAGATATCTGAAATGCT 58.386 38.462 10.74 13.19 0.00 3.79
3683 3694 6.313411 GCCTAGACATGAGATATCTGAAATGC 59.687 42.308 10.74 7.65 0.00 3.56
3684 3695 7.384477 TGCCTAGACATGAGATATCTGAAATG 58.616 38.462 10.74 12.92 0.00 2.32
3685 3696 7.550597 TGCCTAGACATGAGATATCTGAAAT 57.449 36.000 10.74 0.00 0.00 2.17
3686 3697 6.983906 TGCCTAGACATGAGATATCTGAAA 57.016 37.500 10.74 0.00 0.00 2.69
3687 3698 8.655935 TTATGCCTAGACATGAGATATCTGAA 57.344 34.615 10.74 0.00 0.00 3.02
3688 3699 8.112183 TCTTATGCCTAGACATGAGATATCTGA 58.888 37.037 10.74 1.00 37.65 3.27
3689 3700 8.190122 GTCTTATGCCTAGACATGAGATATCTG 58.810 40.741 15.02 0.00 42.50 2.90
3690 3701 7.066887 CGTCTTATGCCTAGACATGAGATATCT 59.933 40.741 15.02 4.47 42.50 1.98
3691 3702 7.066404 TCGTCTTATGCCTAGACATGAGATATC 59.934 40.741 15.02 4.01 42.50 1.63
3692 3703 6.887002 TCGTCTTATGCCTAGACATGAGATAT 59.113 38.462 15.02 0.00 42.50 1.63
3693 3704 6.238648 TCGTCTTATGCCTAGACATGAGATA 58.761 40.000 15.02 5.95 42.50 1.98
3694 3705 5.073428 TCGTCTTATGCCTAGACATGAGAT 58.927 41.667 15.02 0.00 42.50 2.75
3695 3706 4.461198 TCGTCTTATGCCTAGACATGAGA 58.539 43.478 9.09 9.09 41.64 3.27
3696 3707 4.837896 TCGTCTTATGCCTAGACATGAG 57.162 45.455 0.00 4.65 41.64 2.90
3697 3708 5.562890 CGAATCGTCTTATGCCTAGACATGA 60.563 44.000 0.00 0.00 41.64 3.07
3698 3709 4.618912 CGAATCGTCTTATGCCTAGACATG 59.381 45.833 1.20 0.00 41.64 3.21
3699 3710 4.321304 CCGAATCGTCTTATGCCTAGACAT 60.321 45.833 0.82 0.00 41.64 3.06
3700 3711 3.004419 CCGAATCGTCTTATGCCTAGACA 59.996 47.826 0.82 0.00 41.64 3.41
3701 3712 3.004524 ACCGAATCGTCTTATGCCTAGAC 59.995 47.826 0.82 0.00 38.88 2.59
3702 3713 3.004419 CACCGAATCGTCTTATGCCTAGA 59.996 47.826 0.82 0.00 0.00 2.43
3703 3714 3.309388 CACCGAATCGTCTTATGCCTAG 58.691 50.000 0.82 0.00 0.00 3.02
3704 3715 2.545113 GCACCGAATCGTCTTATGCCTA 60.545 50.000 0.82 0.00 0.00 3.93
3705 3716 1.806623 GCACCGAATCGTCTTATGCCT 60.807 52.381 0.82 0.00 0.00 4.75
3706 3717 0.582005 GCACCGAATCGTCTTATGCC 59.418 55.000 0.82 0.00 0.00 4.40
3707 3718 0.582005 GGCACCGAATCGTCTTATGC 59.418 55.000 0.82 3.48 0.00 3.14
3708 3719 1.217882 GGGCACCGAATCGTCTTATG 58.782 55.000 0.82 0.00 40.86 1.90
3709 3720 3.680842 GGGCACCGAATCGTCTTAT 57.319 52.632 0.82 0.00 40.86 1.73
3722 3733 1.004440 GATATGCTCCGAGGGGCAC 60.004 63.158 20.12 2.83 41.39 5.01
3723 3734 2.574018 CGATATGCTCCGAGGGGCA 61.574 63.158 19.99 19.99 42.80 5.36
3724 3735 1.816863 TTCGATATGCTCCGAGGGGC 61.817 60.000 7.12 7.12 36.11 5.80
3725 3736 0.244994 CTTCGATATGCTCCGAGGGG 59.755 60.000 0.00 0.00 36.11 4.79
3726 3737 1.068194 GTCTTCGATATGCTCCGAGGG 60.068 57.143 0.00 0.00 36.11 4.30
3727 3738 1.400371 CGTCTTCGATATGCTCCGAGG 60.400 57.143 0.00 0.00 39.71 4.63
3728 3739 1.400371 CCGTCTTCGATATGCTCCGAG 60.400 57.143 0.00 0.00 39.71 4.63
3729 3740 0.591659 CCGTCTTCGATATGCTCCGA 59.408 55.000 0.00 0.00 39.71 4.55
3730 3741 1.004277 GCCGTCTTCGATATGCTCCG 61.004 60.000 0.00 0.00 39.71 4.63
3731 3742 1.004277 CGCCGTCTTCGATATGCTCC 61.004 60.000 0.00 0.00 39.71 4.70
3732 3743 1.004277 CCGCCGTCTTCGATATGCTC 61.004 60.000 0.00 0.00 39.71 4.26
3733 3744 1.007271 CCGCCGTCTTCGATATGCT 60.007 57.895 0.00 0.00 39.71 3.79
3734 3745 0.874607 AACCGCCGTCTTCGATATGC 60.875 55.000 0.00 0.00 39.71 3.14
3735 3746 1.567504 AAACCGCCGTCTTCGATATG 58.432 50.000 0.00 0.00 39.71 1.78
3736 3747 2.304751 AAAACCGCCGTCTTCGATAT 57.695 45.000 0.00 0.00 39.71 1.63
3737 3748 1.994779 GAAAAACCGCCGTCTTCGATA 59.005 47.619 0.00 0.00 39.71 2.92
3738 3749 0.794473 GAAAAACCGCCGTCTTCGAT 59.206 50.000 0.00 0.00 39.71 3.59
3739 3750 0.249573 AGAAAAACCGCCGTCTTCGA 60.250 50.000 0.00 0.00 39.71 3.71
3740 3751 1.125566 GTAGAAAAACCGCCGTCTTCG 59.874 52.381 0.00 0.00 0.00 3.79
3741 3752 2.869358 GTAGAAAAACCGCCGTCTTC 57.131 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.