Multiple sequence alignment - TraesCS5A01G002100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G002100 chr5A 100.000 4631 0 0 1 4631 1835926 1831296 0.000000e+00 8552.0
1 TraesCS5A01G002100 chr5A 83.473 1313 131 44 1054 2323 1759544 1758275 0.000000e+00 1144.0
2 TraesCS5A01G002100 chr5A 82.745 1304 136 53 1079 2321 1714360 1713085 0.000000e+00 1079.0
3 TraesCS5A01G002100 chr5A 93.351 376 24 1 1978 2353 1803140 1802766 5.240000e-154 555.0
4 TraesCS5A01G002100 chr5A 80.305 655 99 22 3539 4171 1750824 1750178 7.020000e-128 468.0
5 TraesCS5A01G002100 chr5A 85.919 419 44 10 2606 3012 1757862 1757447 2.560000e-117 433.0
6 TraesCS5A01G002100 chr5A 93.818 275 15 1 3019 3291 406990999 406991273 3.330000e-111 412.0
7 TraesCS5A01G002100 chr5A 92.527 281 19 1 3017 3295 581492883 581492603 7.220000e-108 401.0
8 TraesCS5A01G002100 chr5A 90.438 251 19 3 2613 2859 1802584 1802335 4.470000e-85 326.0
9 TraesCS5A01G002100 chr5A 95.122 205 10 0 4427 4631 1798260 1798056 1.610000e-84 324.0
10 TraesCS5A01G002100 chr5A 85.938 256 18 12 1079 1319 1336401 1336653 1.650000e-64 257.0
11 TraesCS5A01G002100 chr5A 90.000 200 19 1 319 518 1803409 1803211 1.650000e-64 257.0
12 TraesCS5A01G002100 chr5A 88.235 204 24 0 4427 4630 1750022 1749819 1.290000e-60 244.0
13 TraesCS5A01G002100 chr5A 87.097 186 13 3 319 498 1760179 1759999 2.830000e-47 200.0
14 TraesCS5A01G002100 chr5A 94.017 117 7 0 4309 4425 1798433 1798317 1.320000e-40 178.0
15 TraesCS5A01G002100 chr5A 89.286 112 12 0 4315 4426 1906428 1906317 1.740000e-29 141.0
16 TraesCS5A01G002100 chr5A 91.489 94 6 1 2351 2442 1802685 1802592 1.350000e-25 128.0
17 TraesCS5A01G002100 chr5A 87.387 111 9 3 4430 4540 1906258 1906153 6.290000e-24 122.0
18 TraesCS5A01G002100 chr5A 85.859 99 14 0 3305 3403 1752483 1752385 6.340000e-19 106.0
19 TraesCS5A01G002100 chr5A 93.651 63 3 1 351 413 1714500 1714439 4.930000e-15 93.5
20 TraesCS5A01G002100 chr5A 92.537 67 1 1 2377 2443 1757927 1757865 4.930000e-15 93.5
21 TraesCS5A01G002100 chr5A 95.652 46 2 0 4379 4424 1906834 1906789 1.790000e-09 75.0
22 TraesCS5A01G002100 chr5B 89.388 2384 174 35 45 2408 2804575 2806899 0.000000e+00 2928.0
23 TraesCS5A01G002100 chr5B 82.108 1442 162 57 931 2321 2883416 2884812 0.000000e+00 1146.0
24 TraesCS5A01G002100 chr5B 81.005 1532 168 63 962 2442 2614438 2612979 0.000000e+00 1103.0
25 TraesCS5A01G002100 chr5B 89.770 479 36 7 3704 4171 2810308 2810784 6.630000e-168 601.0
26 TraesCS5A01G002100 chr5B 81.239 565 74 15 3564 4097 2611075 2610512 1.190000e-115 427.0
27 TraesCS5A01G002100 chr5B 93.091 275 17 1 3019 3291 274471270 274471544 7.220000e-108 401.0
28 TraesCS5A01G002100 chr5B 96.809 188 6 0 4427 4614 2810945 2811132 9.670000e-82 315.0
29 TraesCS5A01G002100 chr5B 87.546 273 31 3 3416 3686 2810051 2810322 3.480000e-81 313.0
30 TraesCS5A01G002100 chr5B 89.344 244 21 3 2779 3019 2612788 2612547 7.530000e-78 302.0
31 TraesCS5A01G002100 chr5B 88.614 202 21 1 4429 4630 2610297 2610098 1.290000e-60 244.0
32 TraesCS5A01G002100 chr5B 96.610 118 4 0 4309 4426 2810772 2810889 3.660000e-46 196.0
33 TraesCS5A01G002100 chr5B 84.536 97 5 5 2734 2820 2806916 2807012 2.300000e-13 87.9
34 TraesCS5A01G002100 chr5D 91.114 1463 90 16 897 2353 2797125 2798553 0.000000e+00 1945.0
35 TraesCS5A01G002100 chr5D 83.475 1416 148 43 1079 2442 3012517 3013898 0.000000e+00 1240.0
36 TraesCS5A01G002100 chr5D 82.974 1439 151 52 931 2321 3070466 3071858 0.000000e+00 1214.0
37 TraesCS5A01G002100 chr5D 88.716 771 70 10 3416 4171 2843686 2844454 0.000000e+00 926.0
38 TraesCS5A01G002100 chr5D 91.132 530 27 7 52 581 2796562 2797071 0.000000e+00 701.0
39 TraesCS5A01G002100 chr5D 92.000 350 24 2 2674 3019 2798621 2798970 5.390000e-134 488.0
40 TraesCS5A01G002100 chr5D 92.683 205 15 0 4427 4631 2844615 2844819 3.500000e-76 296.0
41 TraesCS5A01G002100 chr5D 89.604 202 19 1 4429 4630 3033391 3033590 5.950000e-64 255.0
42 TraesCS5A01G002100 chr5D 79.480 346 61 9 523 860 496697448 496697791 2.150000e-58 237.0
43 TraesCS5A01G002100 chr5D 90.805 174 14 2 639 810 3237745 3237918 1.000000e-56 231.0
44 TraesCS5A01G002100 chr5D 88.021 192 15 6 2426 2616 32496840 32497024 2.170000e-53 220.0
45 TraesCS5A01G002100 chr5D 89.011 182 11 6 2431 2610 66671956 66671782 2.810000e-52 217.0
46 TraesCS5A01G002100 chr5D 88.398 181 18 1 316 496 3070226 3070403 1.010000e-51 215.0
47 TraesCS5A01G002100 chr5D 90.141 142 14 0 4165 4306 370635441 370635300 7.910000e-43 185.0
48 TraesCS5A01G002100 chr5D 94.872 117 6 0 4309 4425 2844442 2844558 2.850000e-42 183.0
49 TraesCS5A01G002100 chr5D 88.793 116 9 2 4309 4424 3033221 3033332 6.250000e-29 139.0
50 TraesCS5A01G002100 chr5D 84.545 110 17 0 4315 4424 2750336 2750445 4.900000e-20 110.0
51 TraesCS5A01G002100 chr5D 100.000 40 0 0 2403 2442 2798566 2798605 1.790000e-09 75.0
52 TraesCS5A01G002100 chr1D 93.333 285 17 1 3017 3299 396411369 396411653 1.990000e-113 420.0
53 TraesCS5A01G002100 chr1D 90.000 170 10 4 2440 2607 74927419 74927255 3.630000e-51 213.0
54 TraesCS5A01G002100 chr1D 92.254 142 10 1 4165 4305 74389210 74389351 2.830000e-47 200.0
55 TraesCS5A01G002100 chr1D 90.977 133 12 0 4173 4305 360845626 360845494 3.680000e-41 180.0
56 TraesCS5A01G002100 chr1D 88.356 146 15 2 4168 4312 386168303 386168159 1.710000e-39 174.0
57 TraesCS5A01G002100 chr1D 87.943 141 15 2 4167 4306 81365492 81365631 1.030000e-36 165.0
58 TraesCS5A01G002100 chr2A 93.165 278 17 1 3016 3291 398656745 398657022 1.550000e-109 407.0
59 TraesCS5A01G002100 chr2A 79.179 341 55 11 526 853 660267931 660268268 6.030000e-54 222.0
60 TraesCS5A01G002100 chr3B 93.141 277 17 1 3017 3291 296024580 296024304 5.580000e-109 405.0
61 TraesCS5A01G002100 chr3B 90.058 171 12 3 2440 2609 775481568 775481734 2.810000e-52 217.0
62 TraesCS5A01G002100 chr3B 92.143 140 9 1 4165 4304 599090526 599090663 3.660000e-46 196.0
63 TraesCS5A01G002100 chr4B 93.091 275 17 1 3019 3291 30668055 30668329 7.220000e-108 401.0
64 TraesCS5A01G002100 chr4B 89.595 173 13 3 2436 2607 512755416 512755248 1.010000e-51 215.0
65 TraesCS5A01G002100 chr4B 92.029 138 10 1 4167 4304 667287855 667287991 4.730000e-45 193.0
66 TraesCS5A01G002100 chr4B 89.928 139 13 1 4167 4305 667265424 667265561 1.320000e-40 178.0
67 TraesCS5A01G002100 chr4B 89.928 139 10 4 4168 4306 72172885 72173019 4.760000e-40 176.0
68 TraesCS5A01G002100 chr4B 88.194 144 14 2 4165 4307 147067937 147067796 7.970000e-38 169.0
69 TraesCS5A01G002100 chr4B 90.909 44 4 0 1537 1580 29674203 29674160 5.000000e-05 60.2
70 TraesCS5A01G002100 chr3D 92.014 288 20 2 3017 3302 387275315 387275029 7.220000e-108 401.0
71 TraesCS5A01G002100 chr3D 89.855 138 13 1 4178 4315 538703037 538702901 4.760000e-40 176.0
72 TraesCS5A01G002100 chr3D 87.838 148 13 4 4167 4313 578207712 578207569 7.970000e-38 169.0
73 TraesCS5A01G002100 chr1A 93.091 275 17 1 3019 3291 312241203 312241477 7.220000e-108 401.0
74 TraesCS5A01G002100 chr1A 88.652 141 15 1 4167 4307 24436947 24436808 2.220000e-38 171.0
75 TraesCS5A01G002100 chr7D 83.284 335 47 9 523 854 603730875 603731203 2.710000e-77 300.0
76 TraesCS5A01G002100 chr7D 94.286 140 6 1 4167 4306 198028716 198028853 3.630000e-51 213.0
77 TraesCS5A01G002100 chr7D 91.971 137 10 1 4167 4303 20910444 20910579 1.700000e-44 191.0
78 TraesCS5A01G002100 chr2B 85.159 283 37 5 526 804 5810796 5810515 7.580000e-73 285.0
79 TraesCS5A01G002100 chr2B 84.375 288 38 7 523 806 5964873 5965157 4.560000e-70 276.0
80 TraesCS5A01G002100 chr2B 83.333 72 6 5 2578 2646 30146024 30145956 1.390000e-05 62.1
81 TraesCS5A01G002100 chr3A 81.105 344 45 14 523 860 66217855 66218184 1.650000e-64 257.0
82 TraesCS5A01G002100 chr1B 95.070 142 7 0 4165 4306 686409607 686409466 1.680000e-54 224.0
83 TraesCS5A01G002100 chr1B 95.070 142 7 0 4165 4306 686436444 686436303 1.680000e-54 224.0
84 TraesCS5A01G002100 chr1B 95.035 141 7 0 4165 4305 686146426 686146286 6.030000e-54 222.0
85 TraesCS5A01G002100 chr1B 89.080 174 14 4 2439 2611 427602942 427603111 1.310000e-50 211.0
86 TraesCS5A01G002100 chr1B 90.909 143 11 1 4165 4307 685983308 685983168 1.700000e-44 191.0
87 TraesCS5A01G002100 chrUn 88.827 179 15 3 2437 2614 74119618 74119444 1.010000e-51 215.0
88 TraesCS5A01G002100 chrUn 83.117 231 25 8 624 853 16200568 16200785 1.020000e-46 198.0
89 TraesCS5A01G002100 chrUn 88.489 139 15 1 4167 4305 79707170 79707307 2.870000e-37 167.0
90 TraesCS5A01G002100 chrUn 87.234 141 16 2 4167 4307 294461590 294461452 4.800000e-35 159.0
91 TraesCS5A01G002100 chrUn 89.916 119 9 3 4186 4303 382908995 382908879 2.890000e-32 150.0
92 TraesCS5A01G002100 chrUn 90.291 103 7 2 4204 4305 269227162 269227262 1.050000e-26 132.0
93 TraesCS5A01G002100 chrUn 86.066 122 10 5 4186 4307 68791091 68791205 1.750000e-24 124.0
94 TraesCS5A01G002100 chrUn 93.902 82 2 2 4225 4306 109126507 109126585 2.260000e-23 121.0
95 TraesCS5A01G002100 chr2D 89.595 173 12 4 2440 2611 620389400 620389233 1.010000e-51 215.0
96 TraesCS5A01G002100 chr2D 92.481 133 10 0 4173 4305 266899405 266899537 1.700000e-44 191.0
97 TraesCS5A01G002100 chr4D 88.333 180 16 3 2440 2618 190480243 190480418 1.310000e-50 211.0
98 TraesCS5A01G002100 chr4D 87.943 141 15 2 4168 4308 63108302 63108164 1.030000e-36 165.0
99 TraesCS5A01G002100 chr4D 87.943 141 16 1 4168 4308 502975768 502975907 1.030000e-36 165.0
100 TraesCS5A01G002100 chr4D 87.143 140 15 2 4168 4306 98023377 98023514 6.200000e-34 156.0
101 TraesCS5A01G002100 chr4D 88.889 126 13 1 4178 4303 14431844 14431720 2.230000e-33 154.0
102 TraesCS5A01G002100 chr4D 86.154 130 12 4 4179 4308 20483757 20483880 8.080000e-28 135.0
103 TraesCS5A01G002100 chr4D 85.950 121 15 2 4186 4305 32937798 32937917 1.350000e-25 128.0
104 TraesCS5A01G002100 chr7A 78.498 293 49 10 569 854 696408921 696409206 3.680000e-41 180.0
105 TraesCS5A01G002100 chr6D 88.112 143 14 3 4163 4305 60226708 60226569 2.870000e-37 167.0
106 TraesCS5A01G002100 chr6D 89.922 129 12 1 4178 4306 139376994 139376867 1.030000e-36 165.0
107 TraesCS5A01G002100 chr6D 87.324 142 15 3 4167 4306 333375889 333376029 4.800000e-35 159.0
108 TraesCS5A01G002100 chr6D 89.062 128 12 2 4178 4305 440214649 440214524 1.720000e-34 158.0
109 TraesCS5A01G002100 chr6D 86.525 141 15 3 4169 4308 436667426 436667289 8.030000e-33 152.0
110 TraesCS5A01G002100 chr4A 85.185 108 14 2 2189 2295 583162401 583162295 4.900000e-20 110.0
111 TraesCS5A01G002100 chr4A 74.595 185 33 8 1537 1720 583163119 583162948 8.310000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G002100 chr5A 1831296 1835926 4630 True 8552.000000 8552 100.000000 1 4631 1 chr5A.!!$R1 4630
1 TraesCS5A01G002100 chr5A 1713085 1714500 1415 True 586.250000 1079 88.198000 351 2321 2 chr5A.!!$R3 1970
2 TraesCS5A01G002100 chr5A 1757447 1760179 2732 True 467.625000 1144 87.256500 319 3012 4 chr5A.!!$R5 2693
3 TraesCS5A01G002100 chr5A 1798056 1803409 5353 True 294.666667 555 92.402833 319 4631 6 chr5A.!!$R6 4312
4 TraesCS5A01G002100 chr5A 1749819 1752483 2664 True 272.666667 468 84.799667 3305 4630 3 chr5A.!!$R4 1325
5 TraesCS5A01G002100 chr5B 2883416 2884812 1396 False 1146.000000 1146 82.108000 931 2321 1 chr5B.!!$F1 1390
6 TraesCS5A01G002100 chr5B 2804575 2811132 6557 False 740.150000 2928 90.776500 45 4614 6 chr5B.!!$F3 4569
7 TraesCS5A01G002100 chr5B 2610098 2614438 4340 True 519.000000 1103 85.050500 962 4630 4 chr5B.!!$R1 3668
8 TraesCS5A01G002100 chr5D 3012517 3013898 1381 False 1240.000000 1240 83.475000 1079 2442 1 chr5D.!!$F2 1363
9 TraesCS5A01G002100 chr5D 2796562 2798970 2408 False 802.250000 1945 93.561500 52 3019 4 chr5D.!!$F6 2967
10 TraesCS5A01G002100 chr5D 3070226 3071858 1632 False 714.500000 1214 85.686000 316 2321 2 chr5D.!!$F9 2005
11 TraesCS5A01G002100 chr5D 2843686 2844819 1133 False 468.333333 926 92.090333 3416 4631 3 chr5D.!!$F7 1215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 443 0.257039 GCTGTCCCCCATTGACATCT 59.743 55.0 0.0 0.0 41.58 2.90 F
1802 2353 0.588252 CAACAGCCAGACCAAGAACG 59.412 55.0 0.0 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 2427 0.033991 TCGTCCTCCTCCTTCTCCAG 60.034 60.0 0.00 0.00 0.00 3.86 R
3770 8678 0.390492 TACATGCATGAGGAGAGCCG 59.610 55.0 32.75 2.55 39.96 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.835494 TCACGGACAGAGGAAGTAGG 58.165 55.000 0.00 0.00 0.00 3.18
23 24 1.075050 TCACGGACAGAGGAAGTAGGT 59.925 52.381 0.00 0.00 0.00 3.08
24 25 2.306805 TCACGGACAGAGGAAGTAGGTA 59.693 50.000 0.00 0.00 0.00 3.08
25 26 2.683867 CACGGACAGAGGAAGTAGGTAG 59.316 54.545 0.00 0.00 0.00 3.18
26 27 2.308275 ACGGACAGAGGAAGTAGGTAGT 59.692 50.000 0.00 0.00 0.00 2.73
27 28 3.521126 ACGGACAGAGGAAGTAGGTAGTA 59.479 47.826 0.00 0.00 0.00 1.82
28 29 3.876320 CGGACAGAGGAAGTAGGTAGTAC 59.124 52.174 0.00 0.00 0.00 2.73
29 30 4.383989 CGGACAGAGGAAGTAGGTAGTACT 60.384 50.000 0.00 0.00 44.51 2.73
90 91 6.983307 GCAAATGGGCATATATTGTGTGTTAA 59.017 34.615 0.00 0.00 0.00 2.01
94 95 7.946381 TGGGCATATATTGTGTGTTAAAAGA 57.054 32.000 0.00 0.00 0.00 2.52
95 96 7.995289 TGGGCATATATTGTGTGTTAAAAGAG 58.005 34.615 0.00 0.00 0.00 2.85
96 97 7.613801 TGGGCATATATTGTGTGTTAAAAGAGT 59.386 33.333 0.00 0.00 0.00 3.24
131 132 8.357402 AGTATTAATTCCCTCAACAACAACAAC 58.643 33.333 0.00 0.00 0.00 3.32
134 135 3.859411 TCCCTCAACAACAACAACAAC 57.141 42.857 0.00 0.00 0.00 3.32
135 136 3.157881 TCCCTCAACAACAACAACAACA 58.842 40.909 0.00 0.00 0.00 3.33
136 137 3.574396 TCCCTCAACAACAACAACAACAA 59.426 39.130 0.00 0.00 0.00 2.83
137 138 3.677596 CCCTCAACAACAACAACAACAAC 59.322 43.478 0.00 0.00 0.00 3.32
138 139 4.302455 CCTCAACAACAACAACAACAACA 58.698 39.130 0.00 0.00 0.00 3.33
139 140 4.747108 CCTCAACAACAACAACAACAACAA 59.253 37.500 0.00 0.00 0.00 2.83
140 141 5.332959 CCTCAACAACAACAACAACAACAAC 60.333 40.000 0.00 0.00 0.00 3.32
141 142 5.109210 TCAACAACAACAACAACAACAACA 58.891 33.333 0.00 0.00 0.00 3.33
142 143 5.580691 TCAACAACAACAACAACAACAACAA 59.419 32.000 0.00 0.00 0.00 2.83
143 144 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
144 145 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
145 146 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
146 147 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
147 148 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
148 149 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
149 150 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
150 151 6.422776 ACAACAACAACAACAACAACAAAA 57.577 29.167 0.00 0.00 0.00 2.44
237 239 7.880160 AAGTGCATATTATTTCTAGTTGCCA 57.120 32.000 0.00 0.00 0.00 4.92
258 260 5.681695 GCCAGAAAGTAGTATGTAGGTGACC 60.682 48.000 0.00 0.00 0.00 4.02
305 307 6.151691 TGATGCTTGTTAGAAGAACAATTGC 58.848 36.000 5.05 5.63 39.16 3.56
349 352 5.573337 AGCCTGAATTTTCAAGATGCTAC 57.427 39.130 0.00 0.00 36.64 3.58
435 443 0.257039 GCTGTCCCCCATTGACATCT 59.743 55.000 0.00 0.00 41.58 2.90
524 532 5.150683 GTTTTGCAAACATACTACATCGCA 58.849 37.500 12.39 0.00 0.00 5.10
561 569 2.867429 CATTTGCTTCCGGATGAACAC 58.133 47.619 20.87 3.84 0.00 3.32
576 584 6.202954 CGGATGAACACTAACTCAAAAGAAGT 59.797 38.462 0.00 0.00 0.00 3.01
581 589 7.279313 TGAACACTAACTCAAAAGAAGTGGTAC 59.721 37.037 5.83 0.00 38.89 3.34
582 590 5.751990 ACACTAACTCAAAAGAAGTGGTACG 59.248 40.000 5.83 0.00 40.86 3.67
585 593 5.924475 AACTCAAAAGAAGTGGTACGATG 57.076 39.130 0.00 0.00 0.00 3.84
586 594 3.746492 ACTCAAAAGAAGTGGTACGATGC 59.254 43.478 0.00 0.00 0.00 3.91
593 601 3.997021 AGAAGTGGTACGATGCTTTCAAG 59.003 43.478 0.00 0.00 0.00 3.02
603 611 6.317789 ACGATGCTTTCAAGAAATTCTGAA 57.682 33.333 0.00 0.34 0.00 3.02
633 641 3.487942 TGTGAATGTTCGTGTTAGTGTCG 59.512 43.478 0.00 0.00 0.00 4.35
637 645 2.269172 TGTTCGTGTTAGTGTCGCAAA 58.731 42.857 0.00 0.00 0.00 3.68
647 655 1.881973 AGTGTCGCAAACATGCTTGAT 59.118 42.857 12.98 0.00 40.80 2.57
656 664 6.308524 TCGCAAACATGCTTGATAATTTTCAG 59.691 34.615 12.98 0.00 0.00 3.02
674 682 1.068472 CAGACGAAACGGAGCAGTAGT 60.068 52.381 0.00 0.00 0.00 2.73
680 688 1.779569 AACGGAGCAGTAGTGTTTCG 58.220 50.000 13.03 13.03 41.48 3.46
691 699 5.446741 GCAGTAGTGTTTCGTCAGTGAAAAA 60.447 40.000 0.00 0.00 39.40 1.94
715 723 5.814481 ACAAATTTGGGATAACATTTGGGG 58.186 37.500 21.74 0.00 39.79 4.96
718 726 6.461577 AATTTGGGATAACATTTGGGGTTT 57.538 33.333 0.00 0.00 0.00 3.27
720 728 7.575499 ATTTGGGATAACATTTGGGGTTTAA 57.425 32.000 0.00 0.00 0.00 1.52
721 729 7.575499 TTTGGGATAACATTTGGGGTTTAAT 57.425 32.000 0.00 0.00 0.00 1.40
722 730 7.575499 TTGGGATAACATTTGGGGTTTAATT 57.425 32.000 0.00 0.00 0.00 1.40
723 731 7.575499 TGGGATAACATTTGGGGTTTAATTT 57.425 32.000 0.00 0.00 0.00 1.82
724 732 7.398024 TGGGATAACATTTGGGGTTTAATTTG 58.602 34.615 0.00 0.00 0.00 2.32
725 733 7.017651 TGGGATAACATTTGGGGTTTAATTTGT 59.982 33.333 0.00 0.00 0.00 2.83
726 734 7.885922 GGGATAACATTTGGGGTTTAATTTGTT 59.114 33.333 0.00 0.00 0.00 2.83
727 735 8.726068 GGATAACATTTGGGGTTTAATTTGTTG 58.274 33.333 0.00 0.00 0.00 3.33
728 736 9.278978 GATAACATTTGGGGTTTAATTTGTTGT 57.721 29.630 0.00 0.00 0.00 3.32
752 760 4.978083 TTTTGCACATGCCAAAATGTTT 57.022 31.818 16.47 0.00 38.75 2.83
754 762 6.441093 TTTTGCACATGCCAAAATGTTTAA 57.559 29.167 16.47 0.00 38.75 1.52
755 763 5.415415 TTGCACATGCCAAAATGTTTAAC 57.585 34.783 0.49 0.00 38.75 2.01
756 764 3.812053 TGCACATGCCAAAATGTTTAACC 59.188 39.130 0.49 0.00 38.75 2.85
802 810 7.661437 GGTAGCATTTGGATGTGACTATGAATA 59.339 37.037 0.00 0.00 35.63 1.75
876 884 2.001872 CGCAAGCCAAATTGGATTTCC 58.998 47.619 17.47 8.17 44.95 3.13
877 885 2.001872 GCAAGCCAAATTGGATTTCCG 58.998 47.619 17.47 5.33 44.95 4.30
878 886 2.353605 GCAAGCCAAATTGGATTTCCGA 60.354 45.455 17.47 0.00 44.95 4.55
879 887 3.253230 CAAGCCAAATTGGATTTCCGAC 58.747 45.455 17.47 0.00 44.95 4.79
921 931 5.639082 ACTTGTTAAGCAGCCAAATAAATGC 59.361 36.000 0.00 0.00 38.97 3.56
945 979 4.394729 ACTTCTATTTGGACGGCTGAAAA 58.605 39.130 0.00 0.00 0.00 2.29
947 981 3.343617 TCTATTTGGACGGCTGAAAAGG 58.656 45.455 0.00 0.00 0.00 3.11
948 982 2.286365 ATTTGGACGGCTGAAAAGGA 57.714 45.000 0.00 0.00 0.00 3.36
1016 1358 0.736053 CTCACTCACTCGCTACCTCC 59.264 60.000 0.00 0.00 0.00 4.30
1025 1367 2.032620 CTCGCTACCTCCCTACACAAT 58.967 52.381 0.00 0.00 0.00 2.71
1028 1370 2.116238 GCTACCTCCCTACACAATCCA 58.884 52.381 0.00 0.00 0.00 3.41
1049 1398 3.767902 GCTAGGAAGCTTCATCTCCAT 57.232 47.619 27.02 0.72 45.85 3.41
1100 1481 3.784701 TCCGCTCTGATCTTTCTGTAC 57.215 47.619 0.00 0.00 0.00 2.90
1146 1535 2.588596 CATGTCATGCCGGCGCTA 60.589 61.111 23.90 4.21 35.36 4.26
1341 1760 2.659016 CTCAGCCTCTGCACCGAA 59.341 61.111 0.00 0.00 41.13 4.30
1429 1851 3.680786 CGTCGTCCCACCTGAGCA 61.681 66.667 0.00 0.00 0.00 4.26
1470 1898 2.089980 GACTCAGTGGCATTGCAAGAT 58.910 47.619 11.39 0.00 0.00 2.40
1674 2126 3.961414 GCCACGAAACCCCAGGGA 61.961 66.667 7.25 0.00 38.96 4.20
1710 2162 4.344865 GAGGGTGGCCGCCTCAAA 62.345 66.667 33.66 0.00 31.77 2.69
1802 2353 0.588252 CAACAGCCAGACCAAGAACG 59.412 55.000 0.00 0.00 0.00 3.95
1809 2360 1.363744 CAGACCAAGAACGGATGCTC 58.636 55.000 0.00 0.00 0.00 4.26
1855 2427 4.166523 TGTCGACGATGAAGAAGATGAAC 58.833 43.478 11.62 0.00 0.00 3.18
1861 2439 4.464244 ACGATGAAGAAGATGAACTGGAGA 59.536 41.667 0.00 0.00 0.00 3.71
2329 2936 6.721318 TGATCATTACTCCAAACTAGCCTTT 58.279 36.000 0.00 0.00 0.00 3.11
2448 3437 9.752961 GAGGTTGATTACTTAATTACTCTCTCC 57.247 37.037 0.00 0.00 0.00 3.71
2449 3438 8.414778 AGGTTGATTACTTAATTACTCTCTCCG 58.585 37.037 0.00 0.00 0.00 4.63
2450 3439 8.196103 GGTTGATTACTTAATTACTCTCTCCGT 58.804 37.037 0.00 0.00 0.00 4.69
2451 3440 9.583765 GTTGATTACTTAATTACTCTCTCCGTT 57.416 33.333 0.00 0.00 0.00 4.44
2452 3441 9.798994 TTGATTACTTAATTACTCTCTCCGTTC 57.201 33.333 0.00 0.00 0.00 3.95
2453 3442 8.411683 TGATTACTTAATTACTCTCTCCGTTCC 58.588 37.037 0.00 0.00 0.00 3.62
2454 3443 7.951347 TTACTTAATTACTCTCTCCGTTCCT 57.049 36.000 0.00 0.00 0.00 3.36
2455 3444 9.638176 ATTACTTAATTACTCTCTCCGTTCCTA 57.362 33.333 0.00 0.00 0.00 2.94
2456 3445 7.951347 ACTTAATTACTCTCTCCGTTCCTAA 57.049 36.000 0.00 0.00 0.00 2.69
2457 3446 8.358582 ACTTAATTACTCTCTCCGTTCCTAAA 57.641 34.615 0.00 0.00 0.00 1.85
2458 3447 8.979534 ACTTAATTACTCTCTCCGTTCCTAAAT 58.020 33.333 0.00 0.00 0.00 1.40
2463 3452 9.765795 ATTACTCTCTCCGTTCCTAAATATTTG 57.234 33.333 11.05 1.40 0.00 2.32
2464 3453 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
2465 3454 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
2466 3455 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
2467 3456 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
2468 3457 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
2469 3458 8.488651 TCTCCGTTCCTAAATATTTGTCTTTC 57.511 34.615 11.05 0.00 0.00 2.62
2470 3459 8.319146 TCTCCGTTCCTAAATATTTGTCTTTCT 58.681 33.333 11.05 0.00 0.00 2.52
2471 3460 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2501 3490 7.878477 ATTTCAACGAGTGACTAAATACGAA 57.122 32.000 0.00 0.00 35.39 3.85
2502 3491 7.697352 TTTCAACGAGTGACTAAATACGAAA 57.303 32.000 0.00 0.00 35.39 3.46
2503 3492 6.922980 TCAACGAGTGACTAAATACGAAAG 57.077 37.500 0.00 0.00 0.00 2.62
2504 3493 6.671190 TCAACGAGTGACTAAATACGAAAGA 58.329 36.000 0.00 0.00 0.00 2.52
2505 3494 7.140705 TCAACGAGTGACTAAATACGAAAGAA 58.859 34.615 0.00 0.00 0.00 2.52
2506 3495 7.648908 TCAACGAGTGACTAAATACGAAAGAAA 59.351 33.333 0.00 0.00 0.00 2.52
2507 3496 8.433126 CAACGAGTGACTAAATACGAAAGAAAT 58.567 33.333 0.00 0.00 0.00 2.17
2508 3497 7.950236 ACGAGTGACTAAATACGAAAGAAATG 58.050 34.615 0.00 0.00 0.00 2.32
2509 3498 7.811236 ACGAGTGACTAAATACGAAAGAAATGA 59.189 33.333 0.00 0.00 0.00 2.57
2510 3499 8.314635 CGAGTGACTAAATACGAAAGAAATGAG 58.685 37.037 0.00 0.00 0.00 2.90
2511 3500 9.141400 GAGTGACTAAATACGAAAGAAATGAGT 57.859 33.333 0.00 0.00 0.00 3.41
2512 3501 8.926710 AGTGACTAAATACGAAAGAAATGAGTG 58.073 33.333 0.00 0.00 0.00 3.51
2513 3502 8.922676 GTGACTAAATACGAAAGAAATGAGTGA 58.077 33.333 0.00 0.00 0.00 3.41
2514 3503 9.483916 TGACTAAATACGAAAGAAATGAGTGAA 57.516 29.630 0.00 0.00 0.00 3.18
2520 3509 9.653287 AATACGAAAGAAATGAGTGAATCTACA 57.347 29.630 0.00 0.00 0.00 2.74
2521 3510 7.352719 ACGAAAGAAATGAGTGAATCTACAC 57.647 36.000 0.00 0.00 40.60 2.90
2568 3557 9.996554 ATATTCGTATGTGATAGTCCATTTGAA 57.003 29.630 0.00 0.00 0.00 2.69
2569 3558 8.731275 ATTCGTATGTGATAGTCCATTTGAAA 57.269 30.769 0.00 0.00 0.00 2.69
2570 3559 8.731275 TTCGTATGTGATAGTCCATTTGAAAT 57.269 30.769 0.00 0.00 0.00 2.17
2571 3560 8.141835 TCGTATGTGATAGTCCATTTGAAATG 57.858 34.615 10.84 10.84 0.00 2.32
2572 3561 7.984617 TCGTATGTGATAGTCCATTTGAAATGA 59.015 33.333 18.82 3.09 0.00 2.57
2573 3562 8.064222 CGTATGTGATAGTCCATTTGAAATGAC 58.936 37.037 18.82 13.92 0.00 3.06
2574 3563 9.113838 GTATGTGATAGTCCATTTGAAATGACT 57.886 33.333 18.82 19.11 0.00 3.41
2576 3565 9.857656 ATGTGATAGTCCATTTGAAATGACTAT 57.142 29.630 25.46 25.46 38.21 2.12
2583 3572 9.739276 AGTCCATTTGAAATGACTATAAAGACA 57.261 29.630 18.82 0.00 0.00 3.41
2601 3590 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2602 3591 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2603 3592 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2604 3593 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2708 3699 2.268076 ATGTCACGCCCTGGCAAAC 61.268 57.895 9.17 3.54 38.24 2.93
2711 3702 1.754621 TCACGCCCTGGCAAACAAA 60.755 52.632 9.17 0.00 42.06 2.83
2756 3747 9.378551 CTAACCATAGAGTGCACTTTATTAACA 57.621 33.333 23.46 11.10 0.00 2.41
2821 3843 9.745018 TCTCTGATCTCTATGACCAAAAATTTT 57.255 29.630 0.00 0.00 0.00 1.82
2977 4002 1.354101 TGGACACCGTGTAATCCCTT 58.646 50.000 3.58 0.00 0.00 3.95
3018 4043 0.035739 GAACGGTGGAGCCAAGGTTA 59.964 55.000 6.47 0.00 36.97 2.85
3019 4044 0.036306 AACGGTGGAGCCAAGGTTAG 59.964 55.000 5.06 0.00 36.97 2.34
3020 4045 1.078426 CGGTGGAGCCAAGGTTAGG 60.078 63.158 0.00 0.00 36.97 2.69
3030 4055 3.199880 CCAAGGTTAGGCTGGTCATAG 57.800 52.381 0.00 0.00 0.00 2.23
3031 4056 2.505819 CCAAGGTTAGGCTGGTCATAGT 59.494 50.000 0.00 0.00 0.00 2.12
3032 4057 3.535561 CAAGGTTAGGCTGGTCATAGTG 58.464 50.000 0.00 0.00 0.00 2.74
3033 4058 2.119495 AGGTTAGGCTGGTCATAGTGG 58.881 52.381 0.00 0.00 0.00 4.00
3034 4059 1.141053 GGTTAGGCTGGTCATAGTGGG 59.859 57.143 0.00 0.00 0.00 4.61
3035 4060 1.141053 GTTAGGCTGGTCATAGTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
3036 4061 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
3037 4062 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
3038 4063 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
3039 4064 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
3040 4065 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3041 4066 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3042 4067 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
3043 4068 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
3044 4069 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
3045 4070 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
3046 4071 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
3047 4072 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
3048 4073 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
3049 4074 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
3050 4075 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
3051 4076 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
3052 4077 5.262804 AGTGGGGAGTAACTTAGACTAGTG 58.737 45.833 0.00 0.00 0.00 2.74
3053 4078 5.015515 GTGGGGAGTAACTTAGACTAGTGT 58.984 45.833 0.00 0.00 0.00 3.55
3054 4079 5.125257 GTGGGGAGTAACTTAGACTAGTGTC 59.875 48.000 0.00 0.00 43.22 3.67
3055 4080 5.222192 TGGGGAGTAACTTAGACTAGTGTCA 60.222 44.000 0.00 0.00 45.20 3.58
3056 4081 5.892686 GGGGAGTAACTTAGACTAGTGTCAT 59.107 44.000 0.00 0.00 45.20 3.06
3057 4082 6.183360 GGGGAGTAACTTAGACTAGTGTCATG 60.183 46.154 0.00 0.00 45.20 3.07
3058 4083 6.267070 GGAGTAACTTAGACTAGTGTCATGC 58.733 44.000 0.00 0.00 45.20 4.06
3059 4084 5.881447 AGTAACTTAGACTAGTGTCATGCG 58.119 41.667 0.00 0.00 45.20 4.73
3060 4085 4.785511 AACTTAGACTAGTGTCATGCGT 57.214 40.909 0.00 0.00 45.20 5.24
3061 4086 5.892160 AACTTAGACTAGTGTCATGCGTA 57.108 39.130 0.00 0.00 45.20 4.42
3062 4087 6.452494 AACTTAGACTAGTGTCATGCGTAT 57.548 37.500 0.00 0.00 45.20 3.06
3063 4088 5.822278 ACTTAGACTAGTGTCATGCGTATG 58.178 41.667 7.22 7.22 45.20 2.39
3064 4089 5.589050 ACTTAGACTAGTGTCATGCGTATGA 59.411 40.000 12.50 12.50 45.20 2.15
3075 4100 5.324784 TCATGCGTATGACACTTCTAAGT 57.675 39.130 12.50 0.00 38.37 2.24
3076 4101 5.720202 TCATGCGTATGACACTTCTAAGTT 58.280 37.500 12.50 0.00 38.37 2.66
3077 4102 6.859017 TCATGCGTATGACACTTCTAAGTTA 58.141 36.000 12.50 0.00 38.37 2.24
3078 4103 6.750501 TCATGCGTATGACACTTCTAAGTTAC 59.249 38.462 12.50 0.00 38.37 2.50
3079 4104 6.263516 TGCGTATGACACTTCTAAGTTACT 57.736 37.500 0.00 0.00 37.08 2.24
3080 4105 7.381766 TGCGTATGACACTTCTAAGTTACTA 57.618 36.000 0.00 0.00 37.08 1.82
3081 4106 7.993101 TGCGTATGACACTTCTAAGTTACTAT 58.007 34.615 0.00 0.00 37.08 2.12
3082 4107 8.127327 TGCGTATGACACTTCTAAGTTACTATC 58.873 37.037 0.00 0.00 37.08 2.08
3083 4108 8.344098 GCGTATGACACTTCTAAGTTACTATCT 58.656 37.037 0.00 0.00 37.08 1.98
3084 4109 9.866936 CGTATGACACTTCTAAGTTACTATCTC 57.133 37.037 0.00 0.00 37.08 2.75
3086 4111 8.824756 ATGACACTTCTAAGTTACTATCTCCA 57.175 34.615 0.00 0.00 37.08 3.86
3087 4112 8.824756 TGACACTTCTAAGTTACTATCTCCAT 57.175 34.615 0.00 0.00 37.08 3.41
3088 4113 9.916360 TGACACTTCTAAGTTACTATCTCCATA 57.084 33.333 0.00 0.00 37.08 2.74
3090 4115 9.924010 ACACTTCTAAGTTACTATCTCCATAGT 57.076 33.333 0.00 0.56 41.75 2.12
3100 4125 9.765795 GTTACTATCTCCATAGTGCAAAGTAAT 57.234 33.333 5.12 0.00 44.33 1.89
3129 4154 9.672673 AGTACTAGTGTCATAAATTGCTTCATT 57.327 29.630 5.39 0.00 0.00 2.57
3145 4170 9.790344 ATTGCTTCATTTATTAGCTCATAGACT 57.210 29.630 0.00 0.00 35.93 3.24
3147 4172 8.424133 TGCTTCATTTATTAGCTCATAGACTCA 58.576 33.333 0.00 0.00 35.93 3.41
3148 4173 9.434420 GCTTCATTTATTAGCTCATAGACTCAT 57.566 33.333 0.00 0.00 32.26 2.90
3166 4191 4.713946 TTTTTCTCGGGATGCGCT 57.286 50.000 9.73 0.00 0.00 5.92
3168 4193 2.325583 TTTTTCTCGGGATGCGCTAT 57.674 45.000 9.73 0.00 0.00 2.97
3169 4194 1.581934 TTTTCTCGGGATGCGCTATG 58.418 50.000 9.73 0.00 0.00 2.23
3170 4195 0.464036 TTTCTCGGGATGCGCTATGT 59.536 50.000 9.73 0.00 0.00 2.29
3171 4196 0.464036 TTCTCGGGATGCGCTATGTT 59.536 50.000 9.73 0.00 0.00 2.71
3172 4197 1.324383 TCTCGGGATGCGCTATGTTA 58.676 50.000 9.73 0.00 0.00 2.41
3173 4198 1.893137 TCTCGGGATGCGCTATGTTAT 59.107 47.619 9.73 0.00 0.00 1.89
3174 4199 3.086282 TCTCGGGATGCGCTATGTTATA 58.914 45.455 9.73 0.00 0.00 0.98
3175 4200 3.128764 TCTCGGGATGCGCTATGTTATAG 59.871 47.826 9.73 0.00 0.00 1.31
3176 4201 2.823747 TCGGGATGCGCTATGTTATAGT 59.176 45.455 9.73 0.00 0.00 2.12
3178 4203 4.460034 TCGGGATGCGCTATGTTATAGTAA 59.540 41.667 9.73 0.00 0.00 2.24
3179 4204 4.561606 CGGGATGCGCTATGTTATAGTAAC 59.438 45.833 9.73 0.00 0.00 2.50
3180 4205 5.475719 GGGATGCGCTATGTTATAGTAACA 58.524 41.667 9.73 5.15 34.31 2.41
3181 4206 6.106673 GGGATGCGCTATGTTATAGTAACAT 58.893 40.000 9.73 16.71 42.82 2.71
3182 4207 7.262772 GGGATGCGCTATGTTATAGTAACATA 58.737 38.462 9.73 17.06 40.87 2.29
3183 4208 7.926555 GGGATGCGCTATGTTATAGTAACATAT 59.073 37.037 17.90 8.21 40.91 1.78
3202 4227 6.423182 ACATATTATGTTACCACAAGCACCT 58.577 36.000 3.40 0.00 41.63 4.00
3204 4229 4.634012 TTATGTTACCACAAGCACCTCT 57.366 40.909 0.00 0.00 36.16 3.69
3206 4231 3.290948 TGTTACCACAAGCACCTCTTT 57.709 42.857 0.00 0.00 31.27 2.52
3207 4232 3.211045 TGTTACCACAAGCACCTCTTTC 58.789 45.455 0.00 0.00 31.27 2.62
3208 4233 2.552743 GTTACCACAAGCACCTCTTTCC 59.447 50.000 0.00 0.00 31.27 3.13
3210 4235 1.202818 ACCACAAGCACCTCTTTCCTC 60.203 52.381 0.00 0.00 31.27 3.71
3211 4236 1.202806 CCACAAGCACCTCTTTCCTCA 60.203 52.381 0.00 0.00 31.27 3.86
3212 4237 2.553904 CCACAAGCACCTCTTTCCTCAT 60.554 50.000 0.00 0.00 31.27 2.90
3214 4239 4.326826 CACAAGCACCTCTTTCCTCATTA 58.673 43.478 0.00 0.00 31.27 1.90
3215 4240 4.761739 CACAAGCACCTCTTTCCTCATTAA 59.238 41.667 0.00 0.00 31.27 1.40
3216 4241 5.241506 CACAAGCACCTCTTTCCTCATTAAA 59.758 40.000 0.00 0.00 31.27 1.52
3217 4242 6.012745 ACAAGCACCTCTTTCCTCATTAAAT 58.987 36.000 0.00 0.00 31.27 1.40
3218 4243 7.121168 CACAAGCACCTCTTTCCTCATTAAATA 59.879 37.037 0.00 0.00 31.27 1.40
3220 4245 6.963322 AGCACCTCTTTCCTCATTAAATAGT 58.037 36.000 0.00 0.00 0.00 2.12
3221 4246 7.406104 AGCACCTCTTTCCTCATTAAATAGTT 58.594 34.615 0.00 0.00 0.00 2.24
3222 4247 7.337942 AGCACCTCTTTCCTCATTAAATAGTTG 59.662 37.037 0.00 0.00 0.00 3.16
3224 4249 6.603599 ACCTCTTTCCTCATTAAATAGTTGCC 59.396 38.462 0.00 0.00 0.00 4.52
3225 4250 6.603201 CCTCTTTCCTCATTAAATAGTTGCCA 59.397 38.462 0.00 0.00 0.00 4.92
3227 4252 6.945435 TCTTTCCTCATTAAATAGTTGCCACA 59.055 34.615 0.00 0.00 0.00 4.17
3228 4253 7.615365 TCTTTCCTCATTAAATAGTTGCCACAT 59.385 33.333 0.00 0.00 0.00 3.21
3229 4254 8.815565 TTTCCTCATTAAATAGTTGCCACATA 57.184 30.769 0.00 0.00 0.00 2.29
3230 4255 8.815565 TTCCTCATTAAATAGTTGCCACATAA 57.184 30.769 0.00 0.00 0.00 1.90
3231 4256 8.450578 TCCTCATTAAATAGTTGCCACATAAG 57.549 34.615 0.00 0.00 0.00 1.73
3233 4258 7.201812 CCTCATTAAATAGTTGCCACATAAGCA 60.202 37.037 0.00 0.00 38.81 3.91
3246 4271 7.715657 TGCCACATAAGCAAAATTATCTTAGG 58.284 34.615 0.00 0.00 37.28 2.69
3247 4272 7.559533 TGCCACATAAGCAAAATTATCTTAGGA 59.440 33.333 10.73 0.00 37.28 2.94
3248 4273 8.579863 GCCACATAAGCAAAATTATCTTAGGAT 58.420 33.333 10.73 0.00 36.07 3.24
3265 4290 8.890410 TCTTAGGATGTGTTAAGTTACTACCT 57.110 34.615 0.00 0.00 0.00 3.08
3266 4291 9.979897 TCTTAGGATGTGTTAAGTTACTACCTA 57.020 33.333 0.00 0.00 0.00 3.08
3269 4294 8.661752 AGGATGTGTTAAGTTACTACCTAAGT 57.338 34.615 0.00 0.00 42.62 2.24
3270 4295 9.097946 AGGATGTGTTAAGTTACTACCTAAGTT 57.902 33.333 0.00 0.00 39.80 2.66
3275 4300 9.847706 GTGTTAAGTTACTACCTAAGTTACTCC 57.152 37.037 0.00 0.00 45.09 3.85
3276 4301 9.813826 TGTTAAGTTACTACCTAAGTTACTCCT 57.186 33.333 0.00 0.00 45.09 3.69
3286 4311 7.159201 ACCTAAGTTACTCCTACTATGGCTA 57.841 40.000 0.00 0.00 0.00 3.93
3287 4312 7.232910 ACCTAAGTTACTCCTACTATGGCTAG 58.767 42.308 0.00 0.00 0.00 3.42
3288 4313 6.151480 CCTAAGTTACTCCTACTATGGCTAGC 59.849 46.154 6.04 6.04 0.00 3.42
3290 4315 4.106663 AGTTACTCCTACTATGGCTAGCCT 59.893 45.833 33.07 20.80 36.94 4.58
3291 4316 3.621682 ACTCCTACTATGGCTAGCCTT 57.378 47.619 33.07 28.43 36.94 4.35
3296 4321 6.148735 TCCTACTATGGCTAGCCTTATGTA 57.851 41.667 33.07 26.46 36.94 2.29
3297 4322 5.950549 TCCTACTATGGCTAGCCTTATGTAC 59.049 44.000 33.07 5.85 36.94 2.90
3300 4325 3.771577 ATGGCTAGCCTTATGTACACC 57.228 47.619 33.07 3.78 36.94 4.16
3329 4844 7.123547 CAGGGGTAGCACAAAAATTTAGGAATA 59.876 37.037 0.00 0.00 0.00 1.75
3332 4847 7.860872 GGGTAGCACAAAAATTTAGGAATATCG 59.139 37.037 0.00 0.00 0.00 2.92
3336 4851 6.475402 GCACAAAAATTTAGGAATATCGTGGG 59.525 38.462 0.00 0.00 0.00 4.61
3340 4855 5.568620 AATTTAGGAATATCGTGGGAGCT 57.431 39.130 0.00 0.00 0.00 4.09
3403 5757 1.898574 GCCTCCCACAACACCACTG 60.899 63.158 0.00 0.00 0.00 3.66
3443 7120 3.004862 GTTAAACCCACCCTATCGTGTG 58.995 50.000 0.00 0.00 31.47 3.82
3451 7131 1.136305 ACCCTATCGTGTGGATCGTTG 59.864 52.381 0.00 0.00 36.55 4.10
3468 7148 0.911045 TTGGATCTGGCAGGAGAGCA 60.911 55.000 15.73 0.00 35.83 4.26
3475 7155 0.991146 TGGCAGGAGAGCACCATTTA 59.009 50.000 0.00 0.00 35.83 1.40
3479 7159 3.084786 GCAGGAGAGCACCATTTACTTT 58.915 45.455 0.00 0.00 0.00 2.66
3485 7165 7.011482 CAGGAGAGCACCATTTACTTTATGTAC 59.989 40.741 0.00 0.00 0.00 2.90
3486 7166 6.260271 GGAGAGCACCATTTACTTTATGTACC 59.740 42.308 0.00 0.00 0.00 3.34
3506 7187 1.482593 CAGGTGCTAGAAATCGGGACT 59.517 52.381 0.00 0.00 0.00 3.85
3509 7190 2.541556 GTGCTAGAAATCGGGACTCAC 58.458 52.381 0.00 0.00 0.00 3.51
3560 8461 5.359576 AGTGTCAAAAACATGAAACTAGGCA 59.640 36.000 0.00 0.00 44.30 4.75
3622 8523 1.068474 AGCATGTTCTACGCGTTGAC 58.932 50.000 22.62 17.01 0.00 3.18
3636 8538 5.575019 ACGCGTTGACAAAATAAAGAAAGT 58.425 33.333 5.58 0.00 0.00 2.66
3718 8620 9.033481 CATAGTGTTTGAAACAATTGACACAAT 57.967 29.630 16.34 12.11 44.16 2.71
3741 8643 6.844696 TGAATGAGCTGGTAAATTCGATAC 57.155 37.500 0.00 0.00 32.78 2.24
3779 8687 1.265236 GATGGATCATCGGCTCTCCT 58.735 55.000 0.00 0.00 31.01 3.69
3807 8715 4.811555 TGTATGAACACTGCAAACACTC 57.188 40.909 0.00 0.00 0.00 3.51
3876 8809 0.824759 GTCAAGGCGAGTACTCCCAT 59.175 55.000 24.02 14.57 0.00 4.00
3922 8856 7.768120 TGCCCGCATCTTAAATTAAAATTTGAT 59.232 29.630 10.26 3.84 38.90 2.57
3923 8857 8.063630 GCCCGCATCTTAAATTAAAATTTGATG 58.936 33.333 16.57 16.57 39.41 3.07
3963 9060 9.567848 GTAAATGTGGGTTATATGTGACAAAAG 57.432 33.333 0.00 0.00 0.00 2.27
3971 9068 9.398538 GGGTTATATGTGACAAAAGTTATACCA 57.601 33.333 0.00 0.00 0.00 3.25
4097 9194 4.036262 GTGTGCGCCTTATTCATTGGAATA 59.964 41.667 4.18 0.00 41.89 1.75
4107 12404 9.921637 CCTTATTCATTGGAATAGAGAGAGTAC 57.078 37.037 0.00 0.00 44.50 2.73
4159 12456 6.118852 TGCTGCATGTGTATCAGGTTTATTA 58.881 36.000 0.00 0.00 0.00 0.98
4160 12457 6.260714 TGCTGCATGTGTATCAGGTTTATTAG 59.739 38.462 0.00 0.00 0.00 1.73
4161 12458 6.483307 GCTGCATGTGTATCAGGTTTATTAGA 59.517 38.462 0.00 0.00 0.00 2.10
4162 12459 7.173907 GCTGCATGTGTATCAGGTTTATTAGAT 59.826 37.037 0.00 0.00 0.00 1.98
4163 12460 9.710900 CTGCATGTGTATCAGGTTTATTAGATA 57.289 33.333 0.00 0.00 0.00 1.98
4184 12481 8.457238 AGATATCCTTTTATTCACTTGCTTCC 57.543 34.615 0.00 0.00 0.00 3.46
4185 12482 5.921962 ATCCTTTTATTCACTTGCTTCCC 57.078 39.130 0.00 0.00 0.00 3.97
4186 12483 4.998051 TCCTTTTATTCACTTGCTTCCCT 58.002 39.130 0.00 0.00 0.00 4.20
4187 12484 5.010282 TCCTTTTATTCACTTGCTTCCCTC 58.990 41.667 0.00 0.00 0.00 4.30
4188 12485 4.158579 CCTTTTATTCACTTGCTTCCCTCC 59.841 45.833 0.00 0.00 0.00 4.30
4189 12486 2.691409 TATTCACTTGCTTCCCTCCG 57.309 50.000 0.00 0.00 0.00 4.63
4190 12487 0.693049 ATTCACTTGCTTCCCTCCGT 59.307 50.000 0.00 0.00 0.00 4.69
4191 12488 0.472471 TTCACTTGCTTCCCTCCGTT 59.528 50.000 0.00 0.00 0.00 4.44
4192 12489 0.472471 TCACTTGCTTCCCTCCGTTT 59.528 50.000 0.00 0.00 0.00 3.60
4193 12490 0.593128 CACTTGCTTCCCTCCGTTTG 59.407 55.000 0.00 0.00 0.00 2.93
4194 12491 1.172812 ACTTGCTTCCCTCCGTTTGC 61.173 55.000 0.00 0.00 0.00 3.68
4195 12492 2.187599 CTTGCTTCCCTCCGTTTGCG 62.188 60.000 0.00 0.00 37.95 4.85
4196 12493 2.358247 GCTTCCCTCCGTTTGCGA 60.358 61.111 0.00 0.00 41.33 5.10
4197 12494 2.391389 GCTTCCCTCCGTTTGCGAG 61.391 63.158 0.00 0.00 41.33 5.03
4198 12495 2.358247 TTCCCTCCGTTTGCGAGC 60.358 61.111 0.00 0.00 41.33 5.03
4199 12496 2.788191 CTTCCCTCCGTTTGCGAGCT 62.788 60.000 0.00 0.00 41.33 4.09
4200 12497 3.121030 CCCTCCGTTTGCGAGCTG 61.121 66.667 0.00 0.00 41.33 4.24
4201 12498 2.357517 CCTCCGTTTGCGAGCTGT 60.358 61.111 0.00 0.00 41.33 4.40
4202 12499 1.080093 CCTCCGTTTGCGAGCTGTA 60.080 57.895 0.00 0.00 41.33 2.74
4203 12500 0.669318 CCTCCGTTTGCGAGCTGTAA 60.669 55.000 0.00 0.00 41.33 2.41
4204 12501 1.359848 CTCCGTTTGCGAGCTGTAAT 58.640 50.000 0.00 0.00 41.33 1.89
4205 12502 2.536365 CTCCGTTTGCGAGCTGTAATA 58.464 47.619 0.00 0.00 41.33 0.98
4206 12503 2.264813 TCCGTTTGCGAGCTGTAATAC 58.735 47.619 0.00 0.00 41.33 1.89
4207 12504 2.094390 TCCGTTTGCGAGCTGTAATACT 60.094 45.455 0.00 0.00 41.33 2.12
4208 12505 2.671396 CCGTTTGCGAGCTGTAATACTT 59.329 45.455 0.00 0.00 41.33 2.24
4209 12506 3.124636 CCGTTTGCGAGCTGTAATACTTT 59.875 43.478 0.00 0.00 41.33 2.66
4210 12507 4.378046 CCGTTTGCGAGCTGTAATACTTTT 60.378 41.667 0.00 0.00 41.33 2.27
4211 12508 5.163933 CCGTTTGCGAGCTGTAATACTTTTA 60.164 40.000 0.00 0.00 41.33 1.52
4212 12509 5.726679 CGTTTGCGAGCTGTAATACTTTTAC 59.273 40.000 0.00 0.00 41.33 2.01
4213 12510 5.444586 TTGCGAGCTGTAATACTTTTACG 57.555 39.130 0.00 0.00 0.00 3.18
4214 12511 4.735985 TGCGAGCTGTAATACTTTTACGA 58.264 39.130 0.00 0.00 0.00 3.43
4215 12512 4.560035 TGCGAGCTGTAATACTTTTACGAC 59.440 41.667 0.00 0.00 0.00 4.34
4216 12513 4.797349 GCGAGCTGTAATACTTTTACGACT 59.203 41.667 0.00 0.00 0.00 4.18
4217 12514 5.287992 GCGAGCTGTAATACTTTTACGACTT 59.712 40.000 0.00 0.00 0.00 3.01
4218 12515 6.183360 GCGAGCTGTAATACTTTTACGACTTT 60.183 38.462 0.00 0.00 0.00 2.66
4219 12516 7.164858 CGAGCTGTAATACTTTTACGACTTTG 58.835 38.462 0.00 0.00 0.00 2.77
4220 12517 7.148853 CGAGCTGTAATACTTTTACGACTTTGT 60.149 37.037 0.00 0.00 0.00 2.83
4221 12518 7.793902 AGCTGTAATACTTTTACGACTTTGTG 58.206 34.615 0.00 0.00 0.00 3.33
4222 12519 7.654520 AGCTGTAATACTTTTACGACTTTGTGA 59.345 33.333 0.00 0.00 0.00 3.58
4223 12520 8.440833 GCTGTAATACTTTTACGACTTTGTGAT 58.559 33.333 0.00 0.00 0.00 3.06
4229 12526 9.701098 ATACTTTTACGACTTTGTGATACTTCA 57.299 29.630 0.00 0.00 0.00 3.02
4230 12527 8.603242 ACTTTTACGACTTTGTGATACTTCAT 57.397 30.769 0.00 0.00 33.56 2.57
4231 12528 8.495949 ACTTTTACGACTTTGTGATACTTCATG 58.504 33.333 0.00 0.00 33.56 3.07
4232 12529 6.961359 TTACGACTTTGTGATACTTCATGG 57.039 37.500 0.00 0.00 33.56 3.66
4233 12530 4.894784 ACGACTTTGTGATACTTCATGGT 58.105 39.130 0.00 0.00 33.56 3.55
4234 12531 5.305585 ACGACTTTGTGATACTTCATGGTT 58.694 37.500 0.00 0.00 33.56 3.67
4235 12532 5.763204 ACGACTTTGTGATACTTCATGGTTT 59.237 36.000 0.00 0.00 33.56 3.27
4236 12533 6.262273 ACGACTTTGTGATACTTCATGGTTTT 59.738 34.615 0.00 0.00 33.56 2.43
4237 12534 7.138736 CGACTTTGTGATACTTCATGGTTTTT 58.861 34.615 0.00 0.00 33.56 1.94
4258 12555 5.595257 TTTTAATAAGATGGCTGCATGCA 57.405 34.783 21.29 21.29 45.15 3.96
4259 12556 5.794726 TTTAATAAGATGGCTGCATGCAT 57.205 34.783 22.97 5.92 45.15 3.96
4260 12557 3.936372 AATAAGATGGCTGCATGCATC 57.064 42.857 22.97 17.75 45.15 3.91
4261 12558 2.351706 TAAGATGGCTGCATGCATCA 57.648 45.000 22.97 21.78 45.15 3.07
4262 12559 1.704641 AAGATGGCTGCATGCATCAT 58.295 45.000 26.51 26.51 45.15 2.45
4263 12560 1.704641 AGATGGCTGCATGCATCATT 58.295 45.000 26.74 17.93 45.15 2.57
4264 12561 2.871453 AGATGGCTGCATGCATCATTA 58.129 42.857 26.74 13.79 45.15 1.90
4265 12562 3.431415 AGATGGCTGCATGCATCATTAT 58.569 40.909 26.74 19.38 45.15 1.28
4266 12563 3.193479 AGATGGCTGCATGCATCATTATG 59.807 43.478 26.74 14.81 45.15 1.90
4267 12564 2.588620 TGGCTGCATGCATCATTATGA 58.411 42.857 22.97 0.00 45.15 2.15
4268 12565 3.161866 TGGCTGCATGCATCATTATGAT 58.838 40.909 22.97 1.25 45.15 2.45
4278 12575 2.174363 TCATTATGATGCAGAGGCCG 57.826 50.000 0.00 0.00 40.13 6.13
4279 12576 1.162698 CATTATGATGCAGAGGCCGG 58.837 55.000 0.00 0.00 40.13 6.13
4280 12577 0.037303 ATTATGATGCAGAGGCCGGG 59.963 55.000 2.18 0.00 40.13 5.73
4281 12578 2.055689 TTATGATGCAGAGGCCGGGG 62.056 60.000 2.18 0.00 40.13 5.73
4284 12581 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
4287 12584 3.782443 CAGAGGCCGGGGGTACAC 61.782 72.222 2.18 0.00 0.00 2.90
4297 12594 3.896854 GGGGTACACCTCCATTTCC 57.103 57.895 6.99 0.00 40.03 3.13
4298 12595 0.996583 GGGGTACACCTCCATTTCCA 59.003 55.000 6.99 0.00 40.03 3.53
4299 12596 1.356398 GGGGTACACCTCCATTTCCAA 59.644 52.381 6.99 0.00 40.03 3.53
4300 12597 2.225167 GGGGTACACCTCCATTTCCAAA 60.225 50.000 6.99 0.00 40.03 3.28
4301 12598 3.502356 GGGTACACCTCCATTTCCAAAA 58.498 45.455 0.00 0.00 35.85 2.44
4302 12599 3.898741 GGGTACACCTCCATTTCCAAAAA 59.101 43.478 0.00 0.00 35.85 1.94
4464 12816 1.251251 ATTGGTGAGGCAGTTGCTTC 58.749 50.000 9.06 9.06 45.94 3.86
4542 12894 0.179161 ACACGCAGAGACGCATAGAC 60.179 55.000 0.00 0.00 36.19 2.59
4619 12971 2.094675 GCATGGAGCTAGCCTTTTTGA 58.905 47.619 12.13 0.00 41.15 2.69
4622 12974 3.004752 TGGAGCTAGCCTTTTTGATCC 57.995 47.619 12.13 9.74 35.76 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.952323 CCTACTTCCTCTGTCCGTGAATA 59.048 47.826 0.00 0.00 0.00 1.75
1 2 2.761208 CCTACTTCCTCTGTCCGTGAAT 59.239 50.000 0.00 0.00 0.00 2.57
4 5 1.546961 ACCTACTTCCTCTGTCCGTG 58.453 55.000 0.00 0.00 0.00 4.94
6 7 3.002038 ACTACCTACTTCCTCTGTCCG 57.998 52.381 0.00 0.00 0.00 4.79
7 8 5.114764 AGTACTACCTACTTCCTCTGTCC 57.885 47.826 0.00 0.00 30.80 4.02
8 9 7.465353 AAAAGTACTACCTACTTCCTCTGTC 57.535 40.000 0.00 0.00 43.78 3.51
9 10 7.852550 AAAAAGTACTACCTACTTCCTCTGT 57.147 36.000 0.00 0.00 43.78 3.41
32 33 7.607615 AGTACTACCTACTCTGTTCCAAAAA 57.392 36.000 0.00 0.00 28.44 1.94
33 34 7.725397 TGTAGTACTACCTACTCTGTTCCAAAA 59.275 37.037 26.41 2.64 38.49 2.44
34 35 7.233632 TGTAGTACTACCTACTCTGTTCCAAA 58.766 38.462 26.41 3.00 38.49 3.28
35 36 6.782986 TGTAGTACTACCTACTCTGTTCCAA 58.217 40.000 26.41 3.60 38.49 3.53
36 37 6.378661 TGTAGTACTACCTACTCTGTTCCA 57.621 41.667 26.41 4.07 38.49 3.53
37 38 6.883756 ACTTGTAGTACTACCTACTCTGTTCC 59.116 42.308 26.41 1.56 38.49 3.62
38 39 7.920160 ACTTGTAGTACTACCTACTCTGTTC 57.080 40.000 26.41 1.75 38.49 3.18
39 40 8.574737 CAAACTTGTAGTACTACCTACTCTGTT 58.425 37.037 26.41 17.04 38.49 3.16
40 41 7.309073 GCAAACTTGTAGTACTACCTACTCTGT 60.309 40.741 26.41 13.17 38.49 3.41
41 42 7.028361 GCAAACTTGTAGTACTACCTACTCTG 58.972 42.308 26.41 17.68 38.49 3.35
42 43 6.718454 TGCAAACTTGTAGTACTACCTACTCT 59.282 38.462 26.41 7.50 38.49 3.24
43 44 6.917533 TGCAAACTTGTAGTACTACCTACTC 58.082 40.000 26.41 12.24 38.49 2.59
94 95 9.824216 TGAGGGAATTAATACTATAGCACTACT 57.176 33.333 0.00 0.00 0.00 2.57
175 176 2.235016 AGCAAAGTTTACGCCCAATCA 58.765 42.857 0.00 0.00 0.00 2.57
176 177 4.428615 TTAGCAAAGTTTACGCCCAATC 57.571 40.909 0.00 0.00 0.00 2.67
179 180 3.057876 CACATTAGCAAAGTTTACGCCCA 60.058 43.478 0.00 0.00 0.00 5.36
180 181 3.498082 CACATTAGCAAAGTTTACGCCC 58.502 45.455 0.00 0.00 0.00 6.13
237 239 6.491383 TCTGGTCACCTACATACTACTTTCT 58.509 40.000 0.00 0.00 0.00 2.52
258 260 0.872388 GTGCCGTAGTTGGGTTTCTG 59.128 55.000 0.00 0.00 0.00 3.02
305 307 5.220931 GCTTTATTAGGTGTTGCATCCTCTG 60.221 44.000 8.54 0.00 35.51 3.35
349 352 7.750903 GCTTTATTTGCTGTTTCCACTACTTAG 59.249 37.037 0.00 0.00 0.00 2.18
549 557 4.610605 TTTGAGTTAGTGTTCATCCGGA 57.389 40.909 6.61 6.61 0.00 5.14
561 569 6.401153 GCATCGTACCACTTCTTTTGAGTTAG 60.401 42.308 0.00 0.00 0.00 2.34
576 584 5.705441 AGAATTTCTTGAAAGCATCGTACCA 59.295 36.000 2.25 0.00 0.00 3.25
581 589 7.807687 AATTCAGAATTTCTTGAAAGCATCG 57.192 32.000 2.20 0.00 0.00 3.84
612 620 3.660904 GCGACACTAACACGAACATTCAC 60.661 47.826 0.00 0.00 0.00 3.18
637 645 6.741992 TCGTCTGAAAATTATCAAGCATGT 57.258 33.333 0.00 0.00 0.00 3.21
647 655 4.059511 TGCTCCGTTTCGTCTGAAAATTA 58.940 39.130 0.00 0.00 45.22 1.40
656 664 1.335689 ACACTACTGCTCCGTTTCGTC 60.336 52.381 0.00 0.00 0.00 4.20
691 699 6.183361 ACCCCAAATGTTATCCCAAATTTGTT 60.183 34.615 16.73 4.40 38.00 2.83
703 711 9.634021 AACAACAAATTAAACCCCAAATGTTAT 57.366 25.926 0.00 0.00 0.00 1.89
735 743 4.064388 AGGTTAAACATTTTGGCATGTGC 58.936 39.130 0.00 0.00 37.46 4.57
736 744 6.616774 AAAGGTTAAACATTTTGGCATGTG 57.383 33.333 0.00 0.00 37.46 3.21
748 756 8.184848 GCAAAATTTTAGGCAAAAGGTTAAACA 58.815 29.630 2.44 0.00 37.08 2.83
749 757 8.184848 TGCAAAATTTTAGGCAAAAGGTTAAAC 58.815 29.630 12.16 0.00 37.08 2.01
752 760 6.484977 CCTGCAAAATTTTAGGCAAAAGGTTA 59.515 34.615 14.62 0.00 37.08 2.85
754 762 4.821260 CCTGCAAAATTTTAGGCAAAAGGT 59.179 37.500 14.62 0.00 37.08 3.50
755 763 4.821260 ACCTGCAAAATTTTAGGCAAAAGG 59.179 37.500 16.50 15.03 37.08 3.11
756 764 6.347644 GCTACCTGCAAAATTTTAGGCAAAAG 60.348 38.462 16.50 13.42 42.31 2.27
844 852 1.750206 TGGCTTGCGCATGAAATATGT 59.250 42.857 25.77 0.00 38.10 2.29
848 856 2.389962 ATTTGGCTTGCGCATGAAAT 57.610 40.000 25.77 18.87 38.10 2.17
853 861 0.538118 ATCCAATTTGGCTTGCGCAT 59.462 45.000 12.75 0.00 37.47 4.73
854 862 0.321021 AATCCAATTTGGCTTGCGCA 59.679 45.000 5.66 5.66 37.47 6.09
856 864 2.001872 GGAAATCCAATTTGGCTTGCG 58.998 47.619 10.76 0.00 37.47 4.85
861 869 3.442273 TGTAGTCGGAAATCCAATTTGGC 59.558 43.478 10.76 0.00 37.47 4.52
862 870 5.356751 TGATGTAGTCGGAAATCCAATTTGG 59.643 40.000 9.28 9.28 39.43 3.28
870 878 6.422776 AATTGTGTGATGTAGTCGGAAATC 57.577 37.500 0.00 0.00 0.00 2.17
875 883 7.129109 AGTTTTAATTGTGTGATGTAGTCGG 57.871 36.000 0.00 0.00 0.00 4.79
876 884 8.067784 ACAAGTTTTAATTGTGTGATGTAGTCG 58.932 33.333 0.00 0.00 39.36 4.18
877 885 9.730420 AACAAGTTTTAATTGTGTGATGTAGTC 57.270 29.630 0.00 0.00 39.91 2.59
921 931 3.334691 TCAGCCGTCCAAATAGAAGTTG 58.665 45.455 0.00 0.00 0.00 3.16
947 981 3.477346 GTAGGCGGGAAGGGGGTC 61.477 72.222 0.00 0.00 0.00 4.46
948 982 3.876255 TTGTAGGCGGGAAGGGGGT 62.876 63.158 0.00 0.00 0.00 4.95
1016 1358 3.742640 GCTTCCTAGCTGGATTGTGTAGG 60.743 52.174 0.00 0.00 45.68 3.18
1049 1398 0.817654 ATCGGTGAAGATCGCAGTGA 59.182 50.000 0.00 0.00 0.00 3.41
1100 1481 1.191944 CACCGTCATCTCGAACGATG 58.808 55.000 8.86 8.43 41.64 3.84
1146 1535 2.041686 GTGAGGAGGAGCGACGTCT 61.042 63.158 14.70 0.00 34.32 4.18
1470 1898 4.021544 GTCTCTTCCTGCTCTTCTTCTTCA 60.022 45.833 0.00 0.00 0.00 3.02
1653 2105 3.491598 CTGGGGTTTCGTGGCCACT 62.492 63.158 32.28 0.00 0.00 4.00
1665 2117 1.004361 GTGGAGGTATCCCTGGGGT 59.996 63.158 14.00 8.72 46.04 4.95
1710 2162 1.813786 GAGTAGTCCACGAAGCAGAGT 59.186 52.381 0.00 0.00 0.00 3.24
1753 2277 1.849975 ATGCTCTGCTTCTGGTGGCT 61.850 55.000 0.00 0.00 0.00 4.75
1809 2360 5.312079 ACTTCTTCAACATCCTTCTCTTGG 58.688 41.667 0.00 0.00 0.00 3.61
1855 2427 0.033991 TCGTCCTCCTCCTTCTCCAG 60.034 60.000 0.00 0.00 0.00 3.86
1861 2439 1.305381 CCACCTCGTCCTCCTCCTT 60.305 63.158 0.00 0.00 0.00 3.36
2041 2625 0.804933 GTCGGAGCGGCTAATTCGTT 60.805 55.000 0.60 0.00 0.00 3.85
2265 2870 1.251527 ACTCCACGATGAAGAGCGGT 61.252 55.000 0.00 0.00 34.48 5.68
2329 2936 3.378742 ACAATACAAAATTGGCGGCGATA 59.621 39.130 12.98 0.00 33.56 2.92
2368 3058 5.171337 CACAACAAGACGATTAACAAACTGC 59.829 40.000 0.00 0.00 0.00 4.40
2443 3432 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
2444 3433 8.319146 AGAAAGACAAATATTTAGGAACGGAGA 58.681 33.333 0.00 0.00 0.00 3.71
2445 3434 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2475 3464 9.577110 TTCGTATTTAGTCACTCGTTGAAATAT 57.423 29.630 0.00 0.00 35.39 1.28
2476 3465 8.969121 TTCGTATTTAGTCACTCGTTGAAATA 57.031 30.769 0.00 0.00 35.39 1.40
2477 3466 7.878477 TTCGTATTTAGTCACTCGTTGAAAT 57.122 32.000 0.00 0.00 35.39 2.17
2478 3467 7.648908 TCTTTCGTATTTAGTCACTCGTTGAAA 59.351 33.333 0.00 0.00 35.39 2.69
2479 3468 7.140705 TCTTTCGTATTTAGTCACTCGTTGAA 58.859 34.615 0.00 0.00 35.39 2.69
2480 3469 6.671190 TCTTTCGTATTTAGTCACTCGTTGA 58.329 36.000 0.00 0.00 0.00 3.18
2481 3470 6.922980 TCTTTCGTATTTAGTCACTCGTTG 57.077 37.500 0.00 0.00 0.00 4.10
2482 3471 7.935338 TTTCTTTCGTATTTAGTCACTCGTT 57.065 32.000 0.00 0.00 0.00 3.85
2483 3472 7.811236 TCATTTCTTTCGTATTTAGTCACTCGT 59.189 33.333 0.00 0.00 0.00 4.18
2484 3473 8.169839 TCATTTCTTTCGTATTTAGTCACTCG 57.830 34.615 0.00 0.00 0.00 4.18
2485 3474 9.141400 ACTCATTTCTTTCGTATTTAGTCACTC 57.859 33.333 0.00 0.00 0.00 3.51
2486 3475 8.926710 CACTCATTTCTTTCGTATTTAGTCACT 58.073 33.333 0.00 0.00 0.00 3.41
2487 3476 8.922676 TCACTCATTTCTTTCGTATTTAGTCAC 58.077 33.333 0.00 0.00 0.00 3.67
2488 3477 9.483916 TTCACTCATTTCTTTCGTATTTAGTCA 57.516 29.630 0.00 0.00 0.00 3.41
2494 3483 9.653287 TGTAGATTCACTCATTTCTTTCGTATT 57.347 29.630 0.00 0.00 0.00 1.89
2495 3484 9.088512 GTGTAGATTCACTCATTTCTTTCGTAT 57.911 33.333 0.00 0.00 35.68 3.06
2496 3485 8.304596 AGTGTAGATTCACTCATTTCTTTCGTA 58.695 33.333 0.00 0.00 44.07 3.43
2497 3486 7.155328 AGTGTAGATTCACTCATTTCTTTCGT 58.845 34.615 0.00 0.00 44.07 3.85
2498 3487 7.588143 AGTGTAGATTCACTCATTTCTTTCG 57.412 36.000 0.00 0.00 44.07 3.46
2542 3531 9.996554 TTCAAATGGACTATCACATACGAATAT 57.003 29.630 0.00 0.00 0.00 1.28
2543 3532 9.825109 TTTCAAATGGACTATCACATACGAATA 57.175 29.630 0.00 0.00 0.00 1.75
2544 3533 8.731275 TTTCAAATGGACTATCACATACGAAT 57.269 30.769 0.00 0.00 0.00 3.34
2545 3534 8.611757 CATTTCAAATGGACTATCACATACGAA 58.388 33.333 1.73 0.00 0.00 3.85
2546 3535 7.984617 TCATTTCAAATGGACTATCACATACGA 59.015 33.333 10.30 0.00 0.00 3.43
2547 3536 8.064222 GTCATTTCAAATGGACTATCACATACG 58.936 37.037 10.30 0.00 0.00 3.06
2548 3537 9.113838 AGTCATTTCAAATGGACTATCACATAC 57.886 33.333 10.30 0.00 38.74 2.39
2550 3539 9.857656 ATAGTCATTTCAAATGGACTATCACAT 57.142 29.630 19.32 8.17 45.59 3.21
2557 3546 9.739276 TGTCTTTATAGTCATTTCAAATGGACT 57.261 29.630 10.30 13.37 42.76 3.85
2575 3564 9.338622 CCTCCGTTCCTAAATATTTGTCTTTAT 57.661 33.333 11.05 0.00 0.00 1.40
2576 3565 7.771826 CCCTCCGTTCCTAAATATTTGTCTTTA 59.228 37.037 11.05 0.00 0.00 1.85
2577 3566 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2578 3567 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2579 3568 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2580 3569 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2581 3570 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2582 3571 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2583 3572 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2584 3573 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
2585 3574 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2586 3575 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2587 3576 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2588 3577 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2589 3578 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2590 3579 3.393426 AATGTACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
2591 3580 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2592 3581 2.762327 TGTAATGTACTCCCTCCGTTCC 59.238 50.000 0.00 0.00 0.00 3.62
2593 3582 4.667519 ATGTAATGTACTCCCTCCGTTC 57.332 45.455 0.00 0.00 0.00 3.95
2594 3583 4.383770 CCAATGTAATGTACTCCCTCCGTT 60.384 45.833 0.00 0.00 0.00 4.44
2595 3584 3.134081 CCAATGTAATGTACTCCCTCCGT 59.866 47.826 0.00 0.00 0.00 4.69
2596 3585 3.134081 ACCAATGTAATGTACTCCCTCCG 59.866 47.826 0.00 0.00 0.00 4.63
2597 3586 4.772886 ACCAATGTAATGTACTCCCTCC 57.227 45.455 0.00 0.00 0.00 4.30
2770 3761 7.128077 ACATGATTTGGAGACCATAGGAAAAT 58.872 34.615 0.00 0.00 31.53 1.82
2821 3843 3.492102 ACAAGTGCTGCTTTCCTCTTA 57.508 42.857 0.00 0.00 34.69 2.10
2870 3892 3.637694 TGAGCAAGAGATCAGAGATCCTG 59.362 47.826 3.52 5.18 44.27 3.86
2935 3957 1.899814 GGCCACGATCATCATAGGGTA 59.100 52.381 0.00 0.00 0.00 3.69
2967 3989 2.375174 ACCAAGCAGTCAAGGGATTACA 59.625 45.455 0.00 0.00 0.00 2.41
3018 4043 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
3019 4044 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
3020 4045 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
3021 4046 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
3022 4047 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
3023 4048 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
3024 4049 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
3025 4050 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
3026 4051 7.013464 CACTAGTCTAAGTTACTCCCCACTATG 59.987 44.444 0.00 0.00 0.00 2.23
3027 4052 7.061688 CACTAGTCTAAGTTACTCCCCACTAT 58.938 42.308 0.00 0.00 0.00 2.12
3028 4053 6.012157 ACACTAGTCTAAGTTACTCCCCACTA 60.012 42.308 0.00 0.00 0.00 2.74
3029 4054 5.222296 ACACTAGTCTAAGTTACTCCCCACT 60.222 44.000 0.00 0.00 0.00 4.00
3030 4055 5.015515 ACACTAGTCTAAGTTACTCCCCAC 58.984 45.833 0.00 0.00 0.00 4.61
3031 4056 5.222192 TGACACTAGTCTAAGTTACTCCCCA 60.222 44.000 0.00 0.00 45.20 4.96
3032 4057 5.259632 TGACACTAGTCTAAGTTACTCCCC 58.740 45.833 0.00 0.00 45.20 4.81
3033 4058 6.680872 GCATGACACTAGTCTAAGTTACTCCC 60.681 46.154 0.00 0.00 45.20 4.30
3034 4059 6.267070 GCATGACACTAGTCTAAGTTACTCC 58.733 44.000 0.00 0.00 45.20 3.85
3035 4060 5.966503 CGCATGACACTAGTCTAAGTTACTC 59.033 44.000 0.00 0.00 45.20 2.59
3036 4061 5.415077 ACGCATGACACTAGTCTAAGTTACT 59.585 40.000 0.00 0.00 45.20 2.24
3037 4062 5.638783 ACGCATGACACTAGTCTAAGTTAC 58.361 41.667 0.00 0.00 45.20 2.50
3038 4063 5.892160 ACGCATGACACTAGTCTAAGTTA 57.108 39.130 0.00 0.00 45.20 2.24
3039 4064 4.785511 ACGCATGACACTAGTCTAAGTT 57.214 40.909 0.00 0.00 45.20 2.66
3040 4065 5.589050 TCATACGCATGACACTAGTCTAAGT 59.411 40.000 0.00 0.00 45.20 2.24
3041 4066 6.061231 TCATACGCATGACACTAGTCTAAG 57.939 41.667 0.00 0.00 45.20 2.18
3053 4078 5.324784 ACTTAGAAGTGTCATACGCATGA 57.675 39.130 0.00 0.00 37.03 3.07
3054 4079 6.752351 AGTAACTTAGAAGTGTCATACGCATG 59.248 38.462 0.00 0.00 39.66 4.06
3055 4080 6.864342 AGTAACTTAGAAGTGTCATACGCAT 58.136 36.000 0.00 0.00 39.66 4.73
3056 4081 6.263516 AGTAACTTAGAAGTGTCATACGCA 57.736 37.500 0.00 0.00 39.66 5.24
3057 4082 8.344098 AGATAGTAACTTAGAAGTGTCATACGC 58.656 37.037 0.00 0.00 39.66 4.42
3058 4083 9.866936 GAGATAGTAACTTAGAAGTGTCATACG 57.133 37.037 0.00 0.00 39.66 3.06
3060 4085 9.916360 TGGAGATAGTAACTTAGAAGTGTCATA 57.084 33.333 0.00 0.00 39.66 2.15
3061 4086 8.824756 TGGAGATAGTAACTTAGAAGTGTCAT 57.175 34.615 0.00 0.00 39.66 3.06
3062 4087 8.824756 ATGGAGATAGTAACTTAGAAGTGTCA 57.175 34.615 0.00 0.00 39.66 3.58
3064 4089 9.924010 ACTATGGAGATAGTAACTTAGAAGTGT 57.076 33.333 0.00 0.00 42.61 3.55
3066 4091 8.852135 GCACTATGGAGATAGTAACTTAGAAGT 58.148 37.037 0.00 0.00 42.55 3.01
3067 4092 8.851145 TGCACTATGGAGATAGTAACTTAGAAG 58.149 37.037 0.00 0.00 42.55 2.85
3068 4093 8.762481 TGCACTATGGAGATAGTAACTTAGAA 57.238 34.615 0.00 0.00 42.55 2.10
3069 4094 8.762481 TTGCACTATGGAGATAGTAACTTAGA 57.238 34.615 0.00 0.00 42.55 2.10
3070 4095 9.469807 CTTTGCACTATGGAGATAGTAACTTAG 57.530 37.037 0.00 0.00 42.55 2.18
3071 4096 8.978472 ACTTTGCACTATGGAGATAGTAACTTA 58.022 33.333 0.00 0.00 42.55 2.24
3072 4097 7.852263 ACTTTGCACTATGGAGATAGTAACTT 58.148 34.615 0.00 0.00 42.55 2.66
3073 4098 7.425224 ACTTTGCACTATGGAGATAGTAACT 57.575 36.000 0.00 0.00 42.55 2.24
3074 4099 9.765795 ATTACTTTGCACTATGGAGATAGTAAC 57.234 33.333 0.00 0.00 42.55 2.50
3103 4128 9.672673 AATGAAGCAATTTATGACACTAGTACT 57.327 29.630 0.00 0.00 0.00 2.73
3120 4145 9.265901 GAGTCTATGAGCTAATAAATGAAGCAA 57.734 33.333 0.00 0.00 38.75 3.91
3121 4146 8.424133 TGAGTCTATGAGCTAATAAATGAAGCA 58.576 33.333 0.00 0.00 38.75 3.91
3122 4147 8.824159 TGAGTCTATGAGCTAATAAATGAAGC 57.176 34.615 0.00 0.00 36.48 3.86
3149 4174 1.939934 CATAGCGCATCCCGAGAAAAA 59.060 47.619 11.47 0.00 40.02 1.94
3150 4175 1.134521 ACATAGCGCATCCCGAGAAAA 60.135 47.619 11.47 0.00 40.02 2.29
3151 4176 0.464036 ACATAGCGCATCCCGAGAAA 59.536 50.000 11.47 0.00 40.02 2.52
3154 4179 2.370281 ATAACATAGCGCATCCCGAG 57.630 50.000 11.47 0.00 40.02 4.63
3155 4180 2.823747 ACTATAACATAGCGCATCCCGA 59.176 45.455 11.47 0.00 40.02 5.14
3156 4181 3.232213 ACTATAACATAGCGCATCCCG 57.768 47.619 11.47 0.00 40.75 5.14
3157 4182 5.475719 TGTTACTATAACATAGCGCATCCC 58.524 41.667 11.47 0.00 0.00 3.85
3158 4183 8.873215 ATATGTTACTATAACATAGCGCATCC 57.127 34.615 20.33 0.00 43.73 3.51
3183 4208 5.381757 AAAGAGGTGCTTGTGGTAACATAA 58.618 37.500 0.00 0.00 46.24 1.90
3185 4210 3.821033 GAAAGAGGTGCTTGTGGTAACAT 59.179 43.478 0.00 0.00 42.99 2.71
3186 4211 3.211045 GAAAGAGGTGCTTGTGGTAACA 58.789 45.455 0.00 0.00 40.32 2.41
3189 4214 2.038557 GAGGAAAGAGGTGCTTGTGGTA 59.961 50.000 0.00 0.00 36.80 3.25
3190 4215 0.846693 AGGAAAGAGGTGCTTGTGGT 59.153 50.000 0.00 0.00 36.80 4.16
3193 4218 3.515602 AATGAGGAAAGAGGTGCTTGT 57.484 42.857 0.00 0.00 36.80 3.16
3195 4220 7.406104 ACTATTTAATGAGGAAAGAGGTGCTT 58.594 34.615 0.00 0.00 38.88 3.91
3196 4221 6.963322 ACTATTTAATGAGGAAAGAGGTGCT 58.037 36.000 0.00 0.00 30.97 4.40
3199 4224 6.603599 GGCAACTATTTAATGAGGAAAGAGGT 59.396 38.462 0.00 0.00 30.97 3.85
3202 4227 6.945435 TGTGGCAACTATTTAATGAGGAAAGA 59.055 34.615 0.00 0.00 37.61 2.52
3204 4229 7.716799 ATGTGGCAACTATTTAATGAGGAAA 57.283 32.000 0.00 0.00 37.61 3.13
3206 4231 7.013274 GCTTATGTGGCAACTATTTAATGAGGA 59.987 37.037 0.00 0.00 37.61 3.71
3207 4232 7.141363 GCTTATGTGGCAACTATTTAATGAGG 58.859 38.462 0.00 0.00 37.61 3.86
3208 4233 7.706159 TGCTTATGTGGCAACTATTTAATGAG 58.294 34.615 0.00 0.00 36.71 2.90
3220 4245 8.196771 CCTAAGATAATTTTGCTTATGTGGCAA 58.803 33.333 0.00 0.00 46.12 4.52
3221 4246 7.559533 TCCTAAGATAATTTTGCTTATGTGGCA 59.440 33.333 0.00 0.00 37.97 4.92
3222 4247 7.940850 TCCTAAGATAATTTTGCTTATGTGGC 58.059 34.615 0.00 0.00 0.00 5.01
3239 4264 9.490083 AGGTAGTAACTTAACACATCCTAAGAT 57.510 33.333 0.00 0.00 0.00 2.40
3240 4265 8.890410 AGGTAGTAACTTAACACATCCTAAGA 57.110 34.615 0.00 0.00 0.00 2.10
3243 4268 9.759473 ACTTAGGTAGTAACTTAACACATCCTA 57.241 33.333 0.00 0.00 34.56 2.94
3244 4269 8.661752 ACTTAGGTAGTAACTTAACACATCCT 57.338 34.615 0.00 0.00 34.56 3.24
3250 4275 9.813826 AGGAGTAACTTAGGTAGTAACTTAACA 57.186 33.333 0.00 0.00 35.54 2.41
3258 4283 8.160106 GCCATAGTAGGAGTAACTTAGGTAGTA 58.840 40.741 0.00 0.00 35.54 1.82
3259 4284 7.003482 GCCATAGTAGGAGTAACTTAGGTAGT 58.997 42.308 0.00 0.00 39.32 2.73
3261 4286 7.159201 AGCCATAGTAGGAGTAACTTAGGTA 57.841 40.000 0.00 0.00 0.00 3.08
3262 4287 6.028258 AGCCATAGTAGGAGTAACTTAGGT 57.972 41.667 0.00 0.00 0.00 3.08
3263 4288 6.151480 GCTAGCCATAGTAGGAGTAACTTAGG 59.849 46.154 2.29 0.00 0.00 2.69
3265 4290 6.008960 GGCTAGCCATAGTAGGAGTAACTTA 58.991 44.000 29.33 0.00 35.81 2.24
3266 4291 4.833938 GGCTAGCCATAGTAGGAGTAACTT 59.166 45.833 29.33 0.00 35.81 2.66
3267 4292 4.106663 AGGCTAGCCATAGTAGGAGTAACT 59.893 45.833 34.70 5.83 38.92 2.24
3268 4293 4.409187 AGGCTAGCCATAGTAGGAGTAAC 58.591 47.826 34.70 2.35 38.92 2.50
3269 4294 4.743705 AGGCTAGCCATAGTAGGAGTAA 57.256 45.455 34.70 0.00 38.92 2.24
3270 4295 4.743705 AAGGCTAGCCATAGTAGGAGTA 57.256 45.455 34.70 0.00 38.92 2.59
3271 4296 3.621682 AAGGCTAGCCATAGTAGGAGT 57.378 47.619 34.70 7.82 38.92 3.85
3272 4297 5.020132 ACATAAGGCTAGCCATAGTAGGAG 58.980 45.833 34.70 15.94 38.92 3.69
3273 4298 5.011982 ACATAAGGCTAGCCATAGTAGGA 57.988 43.478 34.70 7.99 38.92 2.94
3275 4300 6.350277 GGTGTACATAAGGCTAGCCATAGTAG 60.350 46.154 34.70 21.53 38.92 2.57
3276 4301 5.479375 GGTGTACATAAGGCTAGCCATAGTA 59.521 44.000 34.70 25.27 38.92 1.82
3277 4302 4.283722 GGTGTACATAAGGCTAGCCATAGT 59.716 45.833 34.70 26.23 38.92 2.12
3278 4303 4.528596 AGGTGTACATAAGGCTAGCCATAG 59.471 45.833 34.70 22.33 38.92 2.23
3279 4304 4.283467 CAGGTGTACATAAGGCTAGCCATA 59.717 45.833 34.70 27.54 38.92 2.74
3280 4305 3.071602 CAGGTGTACATAAGGCTAGCCAT 59.928 47.826 34.70 26.20 38.92 4.40
3281 4306 2.434336 CAGGTGTACATAAGGCTAGCCA 59.566 50.000 34.70 16.70 38.92 4.75
3282 4307 2.807108 GCAGGTGTACATAAGGCTAGCC 60.807 54.545 27.19 27.19 0.00 3.93
3283 4308 2.158957 TGCAGGTGTACATAAGGCTAGC 60.159 50.000 6.04 6.04 0.00 3.42
3286 4311 1.210478 CCTGCAGGTGTACATAAGGCT 59.790 52.381 25.53 0.00 0.00 4.58
3287 4312 1.668419 CCTGCAGGTGTACATAAGGC 58.332 55.000 25.53 1.77 0.00 4.35
3288 4313 1.134098 CCCCTGCAGGTGTACATAAGG 60.134 57.143 30.63 17.25 0.00 2.69
3290 4315 1.663911 ACCCCTGCAGGTGTACATAA 58.336 50.000 30.63 0.00 39.24 1.90
3291 4316 2.394632 CTACCCCTGCAGGTGTACATA 58.605 52.381 30.63 10.11 41.42 2.29
3296 4321 2.529136 TGCTACCCCTGCAGGTGT 60.529 61.111 30.63 27.66 41.42 4.16
3297 4322 2.045926 GTGCTACCCCTGCAGGTG 60.046 66.667 30.63 23.08 41.42 4.00
3300 4325 1.327303 TTTTTGTGCTACCCCTGCAG 58.673 50.000 6.78 6.78 41.41 4.41
3329 4844 1.685765 TACTGGCAGCTCCCACGAT 60.686 57.895 15.89 0.00 0.00 3.73
3332 4847 1.078848 CAGTACTGGCAGCTCCCAC 60.079 63.158 15.89 5.11 0.00 4.61
3403 5757 4.311520 AACCCCTAAGTACCAATCCAAC 57.688 45.455 0.00 0.00 0.00 3.77
3439 7116 1.656652 CCAGATCCAACGATCCACAC 58.343 55.000 0.00 0.00 45.32 3.82
3443 7120 0.533755 CCTGCCAGATCCAACGATCC 60.534 60.000 0.00 0.00 45.32 3.36
3451 7131 1.145819 GTGCTCTCCTGCCAGATCC 59.854 63.158 0.00 0.00 0.00 3.36
3468 7148 5.650703 GCACCTGGTACATAAAGTAAATGGT 59.349 40.000 0.00 0.00 38.20 3.55
3475 7155 6.368779 TTTCTAGCACCTGGTACATAAAGT 57.631 37.500 0.00 0.00 38.20 2.66
3479 7159 4.038763 CCGATTTCTAGCACCTGGTACATA 59.961 45.833 0.00 0.00 38.20 2.29
3485 7165 0.830648 TCCCGATTTCTAGCACCTGG 59.169 55.000 0.00 0.00 0.00 4.45
3486 7166 1.482593 AGTCCCGATTTCTAGCACCTG 59.517 52.381 0.00 0.00 0.00 4.00
3580 8481 8.092687 TGCTAGTTCCCTTTATATATTTCCGAC 58.907 37.037 0.00 0.00 0.00 4.79
3688 8590 7.222417 TGTCAATTGTTTCAAACACTATGCAAG 59.778 33.333 1.28 0.00 41.97 4.01
3699 8601 8.713737 TCATTCATTGTGTCAATTGTTTCAAA 57.286 26.923 5.13 0.00 0.00 2.69
3705 8607 5.466819 CAGCTCATTCATTGTGTCAATTGT 58.533 37.500 5.13 0.00 0.00 2.71
3718 8620 6.345298 TGTATCGAATTTACCAGCTCATTCA 58.655 36.000 0.00 0.00 0.00 2.57
3770 8678 0.390492 TACATGCATGAGGAGAGCCG 59.610 55.000 32.75 2.55 39.96 5.52
3779 8687 3.345414 TGCAGTGTTCATACATGCATGA 58.655 40.909 32.75 16.49 40.51 3.07
3807 8715 2.307098 AGGGACTCCAAGACAATCCAAG 59.693 50.000 0.00 0.00 34.83 3.61
3876 8809 4.335315 GGCACGTCTAATTCATTGGAATGA 59.665 41.667 0.00 0.00 42.87 2.57
3923 8857 5.878669 CCCACATTTACTTGGTCTAACTACC 59.121 44.000 0.00 0.00 40.19 3.18
3927 8861 7.933215 ATAACCCACATTTACTTGGTCTAAC 57.067 36.000 0.00 0.00 0.00 2.34
4097 9194 4.465660 AGAACATGCATGTGTACTCTCTCT 59.534 41.667 31.98 23.39 41.61 3.10
4107 12404 6.667370 TGTGTAGTTAAAGAACATGCATGTG 58.333 36.000 31.98 9.68 41.61 3.21
4109 12406 8.572828 TTTTGTGTAGTTAAAGAACATGCATG 57.427 30.769 25.09 25.09 38.10 4.06
4159 12456 7.503902 GGGAAGCAAGTGAATAAAAGGATATCT 59.496 37.037 2.05 0.00 0.00 1.98
4160 12457 7.503902 AGGGAAGCAAGTGAATAAAAGGATATC 59.496 37.037 0.00 0.00 0.00 1.63
4161 12458 7.357471 AGGGAAGCAAGTGAATAAAAGGATAT 58.643 34.615 0.00 0.00 0.00 1.63
4162 12459 6.731467 AGGGAAGCAAGTGAATAAAAGGATA 58.269 36.000 0.00 0.00 0.00 2.59
4163 12460 5.583932 AGGGAAGCAAGTGAATAAAAGGAT 58.416 37.500 0.00 0.00 0.00 3.24
4164 12461 4.998051 AGGGAAGCAAGTGAATAAAAGGA 58.002 39.130 0.00 0.00 0.00 3.36
4165 12462 4.158579 GGAGGGAAGCAAGTGAATAAAAGG 59.841 45.833 0.00 0.00 0.00 3.11
4166 12463 4.142600 CGGAGGGAAGCAAGTGAATAAAAG 60.143 45.833 0.00 0.00 0.00 2.27
4167 12464 3.756434 CGGAGGGAAGCAAGTGAATAAAA 59.244 43.478 0.00 0.00 0.00 1.52
4168 12465 3.244770 ACGGAGGGAAGCAAGTGAATAAA 60.245 43.478 0.00 0.00 0.00 1.40
4169 12466 2.304761 ACGGAGGGAAGCAAGTGAATAA 59.695 45.455 0.00 0.00 0.00 1.40
4170 12467 1.906574 ACGGAGGGAAGCAAGTGAATA 59.093 47.619 0.00 0.00 0.00 1.75
4171 12468 0.693049 ACGGAGGGAAGCAAGTGAAT 59.307 50.000 0.00 0.00 0.00 2.57
4172 12469 0.472471 AACGGAGGGAAGCAAGTGAA 59.528 50.000 0.00 0.00 0.00 3.18
4173 12470 0.472471 AAACGGAGGGAAGCAAGTGA 59.528 50.000 0.00 0.00 0.00 3.41
4174 12471 0.593128 CAAACGGAGGGAAGCAAGTG 59.407 55.000 0.00 0.00 0.00 3.16
4175 12472 1.172812 GCAAACGGAGGGAAGCAAGT 61.173 55.000 0.00 0.00 0.00 3.16
4176 12473 1.581447 GCAAACGGAGGGAAGCAAG 59.419 57.895 0.00 0.00 0.00 4.01
4177 12474 2.258013 CGCAAACGGAGGGAAGCAA 61.258 57.895 0.00 0.00 34.97 3.91
4178 12475 2.668212 CGCAAACGGAGGGAAGCA 60.668 61.111 0.00 0.00 34.97 3.91
4179 12476 2.358247 TCGCAAACGGAGGGAAGC 60.358 61.111 0.00 0.00 40.63 3.86
4180 12477 2.391389 GCTCGCAAACGGAGGGAAG 61.391 63.158 0.00 0.00 40.63 3.46
4181 12478 2.358247 GCTCGCAAACGGAGGGAA 60.358 61.111 0.00 0.00 40.63 3.97
4182 12479 3.311110 AGCTCGCAAACGGAGGGA 61.311 61.111 0.00 0.00 40.63 4.20
4183 12480 2.501223 TACAGCTCGCAAACGGAGGG 62.501 60.000 0.00 0.00 40.63 4.30
4184 12481 0.669318 TTACAGCTCGCAAACGGAGG 60.669 55.000 0.00 0.00 40.63 4.30
4185 12482 1.359848 ATTACAGCTCGCAAACGGAG 58.640 50.000 0.00 0.00 40.63 4.63
4186 12483 2.094390 AGTATTACAGCTCGCAAACGGA 60.094 45.455 0.00 0.00 40.63 4.69
4187 12484 2.268298 AGTATTACAGCTCGCAAACGG 58.732 47.619 0.00 0.00 40.63 4.44
4188 12485 3.991605 AAGTATTACAGCTCGCAAACG 57.008 42.857 0.00 0.00 42.01 3.60
4189 12486 5.726679 CGTAAAAGTATTACAGCTCGCAAAC 59.273 40.000 0.00 0.00 0.00 2.93
4190 12487 5.634439 TCGTAAAAGTATTACAGCTCGCAAA 59.366 36.000 0.00 0.00 0.00 3.68
4191 12488 5.061311 GTCGTAAAAGTATTACAGCTCGCAA 59.939 40.000 0.00 0.00 0.00 4.85
4192 12489 4.560035 GTCGTAAAAGTATTACAGCTCGCA 59.440 41.667 0.00 0.00 0.00 5.10
4193 12490 4.797349 AGTCGTAAAAGTATTACAGCTCGC 59.203 41.667 0.00 0.00 0.00 5.03
4194 12491 6.866179 AAGTCGTAAAAGTATTACAGCTCG 57.134 37.500 0.00 0.00 0.00 5.03
4195 12492 7.950496 CACAAAGTCGTAAAAGTATTACAGCTC 59.050 37.037 0.00 0.00 0.00 4.09
4196 12493 7.654520 TCACAAAGTCGTAAAAGTATTACAGCT 59.345 33.333 0.00 0.00 0.00 4.24
4197 12494 7.790000 TCACAAAGTCGTAAAAGTATTACAGC 58.210 34.615 0.00 0.00 0.00 4.40
4203 12500 9.701098 TGAAGTATCACAAAGTCGTAAAAGTAT 57.299 29.630 0.00 0.00 0.00 2.12
4204 12501 9.701098 ATGAAGTATCACAAAGTCGTAAAAGTA 57.299 29.630 0.00 0.00 38.69 2.24
4205 12502 8.495949 CATGAAGTATCACAAAGTCGTAAAAGT 58.504 33.333 0.00 0.00 38.69 2.66
4206 12503 7.957484 CCATGAAGTATCACAAAGTCGTAAAAG 59.043 37.037 0.00 0.00 38.69 2.27
4207 12504 7.442969 ACCATGAAGTATCACAAAGTCGTAAAA 59.557 33.333 0.00 0.00 38.69 1.52
4208 12505 6.932400 ACCATGAAGTATCACAAAGTCGTAAA 59.068 34.615 0.00 0.00 38.69 2.01
4209 12506 6.460781 ACCATGAAGTATCACAAAGTCGTAA 58.539 36.000 0.00 0.00 38.69 3.18
4210 12507 6.032956 ACCATGAAGTATCACAAAGTCGTA 57.967 37.500 0.00 0.00 38.69 3.43
4211 12508 4.894784 ACCATGAAGTATCACAAAGTCGT 58.105 39.130 0.00 0.00 38.69 4.34
4212 12509 5.862924 AACCATGAAGTATCACAAAGTCG 57.137 39.130 0.00 0.00 38.69 4.18
4235 12532 5.975282 TGCATGCAGCCATCTTATTAAAAA 58.025 33.333 18.46 0.00 44.83 1.94
4236 12533 5.595257 TGCATGCAGCCATCTTATTAAAA 57.405 34.783 18.46 0.00 44.83 1.52
4237 12534 5.302313 TGATGCATGCAGCCATCTTATTAAA 59.698 36.000 31.30 6.79 44.83 1.52
4238 12535 4.828387 TGATGCATGCAGCCATCTTATTAA 59.172 37.500 31.30 7.33 44.83 1.40
4239 12536 4.400120 TGATGCATGCAGCCATCTTATTA 58.600 39.130 31.30 8.11 44.83 0.98
4240 12537 3.227614 TGATGCATGCAGCCATCTTATT 58.772 40.909 31.30 8.21 44.83 1.40
4241 12538 2.871453 TGATGCATGCAGCCATCTTAT 58.129 42.857 31.30 9.02 44.83 1.73
4242 12539 2.351706 TGATGCATGCAGCCATCTTA 57.648 45.000 31.30 10.43 44.83 2.10
4243 12540 1.704641 ATGATGCATGCAGCCATCTT 58.295 45.000 31.30 16.09 44.83 2.40
4244 12541 1.704641 AATGATGCATGCAGCCATCT 58.295 45.000 31.30 18.87 44.83 2.90
4245 12542 3.192633 TCATAATGATGCATGCAGCCATC 59.807 43.478 31.30 20.98 44.83 3.51
4246 12543 3.161866 TCATAATGATGCATGCAGCCAT 58.838 40.909 31.30 27.32 44.83 4.40
4247 12544 2.588620 TCATAATGATGCATGCAGCCA 58.411 42.857 31.30 26.44 44.83 4.75
4248 12545 3.511699 CATCATAATGATGCATGCAGCC 58.488 45.455 31.30 22.02 46.37 4.85
4258 12555 2.617276 CCGGCCTCTGCATCATAATGAT 60.617 50.000 0.00 0.00 37.65 2.45
4259 12556 1.271001 CCGGCCTCTGCATCATAATGA 60.271 52.381 0.00 0.00 40.13 2.57
4260 12557 1.162698 CCGGCCTCTGCATCATAATG 58.837 55.000 0.00 0.00 40.13 1.90
4261 12558 0.037303 CCCGGCCTCTGCATCATAAT 59.963 55.000 0.00 0.00 40.13 1.28
4262 12559 1.451504 CCCGGCCTCTGCATCATAA 59.548 57.895 0.00 0.00 40.13 1.90
4263 12560 2.519622 CCCCGGCCTCTGCATCATA 61.520 63.158 0.00 0.00 40.13 2.15
4264 12561 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
4267 12564 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
4270 12567 3.782443 GTGTACCCCCGGCCTCTG 61.782 72.222 0.00 0.00 0.00 3.35
4276 12573 1.568118 AAATGGAGGTGTACCCCCGG 61.568 60.000 0.00 0.00 36.42 5.73
4277 12574 0.107361 GAAATGGAGGTGTACCCCCG 60.107 60.000 0.00 0.00 36.42 5.73
4278 12575 0.257905 GGAAATGGAGGTGTACCCCC 59.742 60.000 0.00 0.00 36.42 5.40
4279 12576 0.996583 TGGAAATGGAGGTGTACCCC 59.003 55.000 0.00 0.00 36.42 4.95
4280 12577 2.891191 TTGGAAATGGAGGTGTACCC 57.109 50.000 0.00 0.00 36.42 3.69
4303 12600 6.265422 CCCCGCTGAAAAGGATATCTATTTTT 59.735 38.462 15.62 13.17 0.00 1.94
4304 12601 5.770162 CCCCGCTGAAAAGGATATCTATTTT 59.230 40.000 14.87 14.87 0.00 1.82
4305 12602 5.073144 TCCCCGCTGAAAAGGATATCTATTT 59.927 40.000 2.05 4.51 0.00 1.40
4306 12603 4.597507 TCCCCGCTGAAAAGGATATCTATT 59.402 41.667 2.05 0.00 0.00 1.73
4307 12604 4.168101 TCCCCGCTGAAAAGGATATCTAT 58.832 43.478 2.05 0.00 0.00 1.98
4464 12816 5.669848 GCTTGCACTTCAATTCTTAGTCTCG 60.670 44.000 0.00 0.00 33.57 4.04
4534 12886 5.862924 TCCTTTCTTTCTTTGTCTATGCG 57.137 39.130 0.00 0.00 0.00 4.73
4542 12894 6.141560 AGTGCTTCTTCCTTTCTTTCTTTG 57.858 37.500 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.