Multiple sequence alignment - TraesCS5A01G001700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G001700 chr5A 100.000 2347 0 0 1 2347 1240766 1243112 0.000000e+00 4335.0
1 TraesCS5A01G001700 chr5A 95.420 1201 52 2 1 1201 606886414 606885217 0.000000e+00 1910.0
2 TraesCS5A01G001700 chr5A 94.000 250 15 0 2085 2334 556664170 556664419 1.700000e-101 379.0
3 TraesCS5A01G001700 chr5A 94.000 250 15 0 2085 2334 556665100 556665349 1.700000e-101 379.0
4 TraesCS5A01G001700 chr5A 96.269 134 4 1 1647 1780 357692711 357692579 3.930000e-53 219.0
5 TraesCS5A01G001700 chr7A 97.169 1201 31 1 1 1201 668556293 668555096 0.000000e+00 2026.0
6 TraesCS5A01G001700 chr7A 95.420 1201 52 1 1 1201 71221113 71222310 0.000000e+00 1910.0
7 TraesCS5A01G001700 chr7A 96.358 302 10 1 1325 1625 71222309 71222610 1.620000e-136 496.0
8 TraesCS5A01G001700 chr7A 95.681 301 13 0 1325 1625 668555097 668554797 3.510000e-133 484.0
9 TraesCS5A01G001700 chr7A 99.219 128 1 0 1648 1775 677975807 677975934 5.040000e-57 231.0
10 TraesCS5A01G001700 chr7A 94.891 137 6 1 1197 1333 610452833 610452968 1.830000e-51 213.0
11 TraesCS5A01G001700 chr7A 94.891 137 5 2 1193 1327 635737008 635736872 1.830000e-51 213.0
12 TraesCS5A01G001700 chr3A 96.589 1202 37 2 1 1201 11599028 11597830 0.000000e+00 1989.0
13 TraesCS5A01G001700 chr3A 96.506 1202 38 2 1 1201 11605916 11604718 0.000000e+00 1984.0
14 TraesCS5A01G001700 chr3A 95.837 1201 47 1 1 1201 27580976 27582173 0.000000e+00 1938.0
15 TraesCS5A01G001700 chr3A 95.670 1201 47 2 1 1201 684743945 684745140 0.000000e+00 1925.0
16 TraesCS5A01G001700 chr3A 94.872 312 16 0 1775 2086 27583690 27584001 2.710000e-134 488.0
17 TraesCS5A01G001700 chr3A 94.872 312 16 0 1775 2086 684745596 684745907 2.710000e-134 488.0
18 TraesCS5A01G001700 chr3A 95.817 263 11 0 2085 2347 305755014 305754752 2.160000e-115 425.0
19 TraesCS5A01G001700 chr3A 93.200 250 15 2 2085 2334 571695087 571695334 1.330000e-97 366.0
20 TraesCS5A01G001700 chr3A 97.656 128 3 0 1200 1327 521909390 521909263 1.090000e-53 220.0
21 TraesCS5A01G001700 chr2A 96.087 1201 44 1 1 1201 619740910 619739713 0.000000e+00 1954.0
22 TraesCS5A01G001700 chr2A 95.754 1201 47 2 1 1201 767163598 767162402 0.000000e+00 1932.0
23 TraesCS5A01G001700 chr2A 95.820 311 13 0 1775 2085 38300029 38300339 9.680000e-139 503.0
24 TraesCS5A01G001700 chr2A 94.855 311 16 0 1775 2085 48259741 48260051 9.750000e-134 486.0
25 TraesCS5A01G001700 chr2A 93.916 263 15 1 2085 2347 724931923 724931662 1.690000e-106 396.0
26 TraesCS5A01G001700 chr2A 94.000 250 14 1 2085 2334 724939425 724939177 6.120000e-101 377.0
27 TraesCS5A01G001700 chr2A 81.050 438 70 11 1653 2086 714001015 714000587 1.040000e-88 337.0
28 TraesCS5A01G001700 chr2A 94.286 140 7 1 1646 1785 442717013 442716875 1.830000e-51 213.0
29 TraesCS5A01G001700 chr6A 95.192 312 15 0 1775 2086 531390833 531390522 5.830000e-136 494.0
30 TraesCS5A01G001700 chr6A 95.695 302 12 1 1325 1625 531390861 531390560 3.510000e-133 484.0
31 TraesCS5A01G001700 chr6A 97.638 127 3 0 1200 1326 542709474 542709348 3.930000e-53 219.0
32 TraesCS5A01G001700 chr3B 95.192 312 15 0 1775 2086 572677215 572677526 5.830000e-136 494.0
33 TraesCS5A01G001700 chr3B 95.695 302 12 1 1325 1625 572677187 572677488 3.510000e-133 484.0
34 TraesCS5A01G001700 chr3B 84.545 440 34 6 1647 2086 791761071 791760666 2.810000e-109 405.0
35 TraesCS5A01G001700 chr3B 96.296 135 4 1 1193 1326 630594073 630594207 1.090000e-53 220.0
36 TraesCS5A01G001700 chr5B 95.192 312 14 1 1775 2085 492815032 492814721 2.100000e-135 492.0
37 TraesCS5A01G001700 chr5B 94.603 315 16 1 1775 2088 492815708 492815394 9.750000e-134 486.0
38 TraesCS5A01G001700 chr5B 95.695 302 12 1 1325 1625 492815736 492815435 3.510000e-133 484.0
39 TraesCS5A01G001700 chr5B 95.380 303 12 2 1325 1625 492815060 492814758 4.540000e-132 481.0
40 TraesCS5A01G001700 chr5B 97.656 128 3 0 1200 1327 303109626 303109753 1.090000e-53 220.0
41 TraesCS5A01G001700 chr5B 95.620 137 4 2 1647 1781 492815525 492815389 3.930000e-53 219.0
42 TraesCS5A01G001700 chr7B 94.872 312 16 0 1775 2086 290953944 290953633 2.710000e-134 488.0
43 TraesCS5A01G001700 chr7B 86.638 232 22 8 1647 1874 226424807 226425033 5.010000e-62 248.0
44 TraesCS5A01G001700 chr4B 95.695 302 12 1 1325 1625 85986694 85986995 3.510000e-133 484.0
45 TraesCS5A01G001700 chr2B 95.695 302 12 1 1325 1625 721724355 721724656 3.510000e-133 484.0
46 TraesCS5A01G001700 chr6B 95.364 302 13 1 1325 1625 317213180 317212879 1.630000e-131 479.0
47 TraesCS5A01G001700 chr7D 94.094 254 14 1 2085 2338 54673115 54673367 3.660000e-103 385.0
48 TraesCS5A01G001700 chrUn 94.000 250 15 0 2085 2334 477895256 477895505 1.700000e-101 379.0
49 TraesCS5A01G001700 chr1A 88.557 201 13 9 1647 1842 579004328 579004133 3.900000e-58 235.0
50 TraesCS5A01G001700 chr1A 94.245 139 8 0 1647 1785 446245191 446245329 1.830000e-51 213.0
51 TraesCS5A01G001700 chr4D 93.243 148 8 2 1200 1347 353045366 353045511 1.410000e-52 217.0
52 TraesCS5A01G001700 chr1D 96.212 132 5 0 1195 1326 43298755 43298886 1.410000e-52 217.0
53 TraesCS5A01G001700 chr1B 95.522 134 6 0 1193 1326 683747953 683748086 5.080000e-52 215.0
54 TraesCS5A01G001700 chr1B 87.143 70 6 3 2196 2264 285307371 285307304 2.500000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G001700 chr5A 1240766 1243112 2346 False 4335.0 4335 100.0000 1 2347 1 chr5A.!!$F1 2346
1 TraesCS5A01G001700 chr5A 606885217 606886414 1197 True 1910.0 1910 95.4200 1 1201 1 chr5A.!!$R2 1200
2 TraesCS5A01G001700 chr5A 556664170 556665349 1179 False 379.0 379 94.0000 2085 2334 2 chr5A.!!$F2 249
3 TraesCS5A01G001700 chr7A 668554797 668556293 1496 True 1255.0 2026 96.4250 1 1625 2 chr7A.!!$R2 1624
4 TraesCS5A01G001700 chr7A 71221113 71222610 1497 False 1203.0 1910 95.8890 1 1625 2 chr7A.!!$F3 1624
5 TraesCS5A01G001700 chr3A 11597830 11599028 1198 True 1989.0 1989 96.5890 1 1201 1 chr3A.!!$R1 1200
6 TraesCS5A01G001700 chr3A 11604718 11605916 1198 True 1984.0 1984 96.5060 1 1201 1 chr3A.!!$R2 1200
7 TraesCS5A01G001700 chr3A 27580976 27584001 3025 False 1213.0 1938 95.3545 1 2086 2 chr3A.!!$F2 2085
8 TraesCS5A01G001700 chr3A 684743945 684745907 1962 False 1206.5 1925 95.2710 1 2086 2 chr3A.!!$F3 2085
9 TraesCS5A01G001700 chr2A 619739713 619740910 1197 True 1954.0 1954 96.0870 1 1201 1 chr2A.!!$R2 1200
10 TraesCS5A01G001700 chr2A 767162402 767163598 1196 True 1932.0 1932 95.7540 1 1201 1 chr2A.!!$R6 1200
11 TraesCS5A01G001700 chr5B 492814721 492815736 1015 True 432.4 492 95.2980 1325 2088 5 chr5B.!!$R1 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 2468 2.457743 TTTGTCGGCGTGGGTGCTAT 62.458 55.0 6.85 0.0 34.52 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 4625 0.107116 AACACACCCCACAAAGCGTA 60.107 50.0 0.0 0.0 0.0 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.181487 TCGAAACTGCACAAGTATATAAGAAC 57.819 34.615 0.00 0.00 38.56 3.01
157 158 8.561738 AACAAAATAAATCCGACTGAGTACAT 57.438 30.769 0.00 0.00 0.00 2.29
159 160 9.095065 ACAAAATAAATCCGACTGAGTACATAC 57.905 33.333 0.00 0.00 0.00 2.39
538 539 4.370776 TCTGATTTCCAACCTATCCCTGA 58.629 43.478 0.00 0.00 0.00 3.86
975 2467 3.166490 TTTGTCGGCGTGGGTGCTA 62.166 57.895 6.85 0.00 34.52 3.49
976 2468 2.457743 TTTGTCGGCGTGGGTGCTAT 62.458 55.000 6.85 0.00 34.52 2.97
1030 2522 2.871795 TACCGGAGAGCATGCCCTGA 62.872 60.000 15.66 0.00 0.00 3.86
1147 2639 2.833582 CTCCTCGCGCTTCCCCTA 60.834 66.667 5.56 0.00 0.00 3.53
1148 2640 2.123425 TCCTCGCGCTTCCCCTAT 60.123 61.111 5.56 0.00 0.00 2.57
1149 2641 1.749334 CTCCTCGCGCTTCCCCTATT 61.749 60.000 5.56 0.00 0.00 1.73
1150 2642 1.595382 CCTCGCGCTTCCCCTATTG 60.595 63.158 5.56 0.00 0.00 1.90
1151 2643 1.144057 CTCGCGCTTCCCCTATTGT 59.856 57.895 5.56 0.00 0.00 2.71
1152 2644 1.153449 TCGCGCTTCCCCTATTGTG 60.153 57.895 5.56 0.00 0.00 3.33
1153 2645 2.180204 CGCGCTTCCCCTATTGTGG 61.180 63.158 5.56 0.00 0.00 4.17
1154 2646 2.481471 GCGCTTCCCCTATTGTGGC 61.481 63.158 0.00 0.00 0.00 5.01
1155 2647 1.224592 CGCTTCCCCTATTGTGGCT 59.775 57.895 0.00 0.00 0.00 4.75
1156 2648 0.468226 CGCTTCCCCTATTGTGGCTA 59.532 55.000 0.00 0.00 0.00 3.93
1157 2649 1.541233 CGCTTCCCCTATTGTGGCTAG 60.541 57.143 0.00 0.00 0.00 3.42
1158 2650 1.815795 GCTTCCCCTATTGTGGCTAGC 60.816 57.143 6.04 6.04 0.00 3.42
1159 2651 0.468226 TTCCCCTATTGTGGCTAGCG 59.532 55.000 9.00 0.00 0.00 4.26
1160 2652 0.689745 TCCCCTATTGTGGCTAGCGT 60.690 55.000 9.00 0.00 0.00 5.07
1161 2653 0.532862 CCCCTATTGTGGCTAGCGTG 60.533 60.000 9.00 0.00 0.00 5.34
1162 2654 1.160329 CCCTATTGTGGCTAGCGTGC 61.160 60.000 9.00 1.67 0.00 5.34
1163 2655 0.461870 CCTATTGTGGCTAGCGTGCA 60.462 55.000 9.00 4.51 34.04 4.57
1164 2656 1.586422 CTATTGTGGCTAGCGTGCAT 58.414 50.000 9.00 1.07 34.04 3.96
1165 2657 1.262417 CTATTGTGGCTAGCGTGCATG 59.738 52.381 9.00 0.09 34.04 4.06
1166 2658 0.392863 ATTGTGGCTAGCGTGCATGA 60.393 50.000 10.93 0.00 34.04 3.07
1167 2659 0.392863 TTGTGGCTAGCGTGCATGAT 60.393 50.000 10.93 5.86 34.04 2.45
1168 2660 1.091197 TGTGGCTAGCGTGCATGATG 61.091 55.000 10.93 0.00 34.04 3.07
1169 2661 1.091771 GTGGCTAGCGTGCATGATGT 61.092 55.000 10.93 0.00 34.04 3.06
1170 2662 0.811219 TGGCTAGCGTGCATGATGTC 60.811 55.000 10.93 0.52 34.04 3.06
1171 2663 1.561730 GCTAGCGTGCATGATGTCG 59.438 57.895 10.93 0.00 0.00 4.35
1172 2664 1.825285 GCTAGCGTGCATGATGTCGG 61.825 60.000 10.93 0.00 0.00 4.79
1173 2665 1.825285 CTAGCGTGCATGATGTCGGC 61.825 60.000 10.93 5.32 0.00 5.54
1174 2666 2.570582 TAGCGTGCATGATGTCGGCA 62.571 55.000 10.93 0.00 34.70 5.69
1175 2667 2.705220 CGTGCATGATGTCGGCAG 59.295 61.111 0.00 0.00 38.38 4.85
1176 2668 2.816360 CGTGCATGATGTCGGCAGG 61.816 63.158 0.00 0.00 38.38 4.85
1177 2669 2.825387 TGCATGATGTCGGCAGGC 60.825 61.111 0.00 0.00 42.80 4.85
1178 2670 3.945434 GCATGATGTCGGCAGGCG 61.945 66.667 10.80 10.80 33.22 5.52
1179 2671 3.274586 CATGATGTCGGCAGGCGG 61.275 66.667 17.49 4.62 0.00 6.13
1194 2686 3.255379 CGGCTCGCGGTTAGCTTC 61.255 66.667 16.58 2.04 45.59 3.86
1195 2687 2.890961 GGCTCGCGGTTAGCTTCC 60.891 66.667 16.58 0.00 45.59 3.46
1196 2688 2.184579 GCTCGCGGTTAGCTTCCT 59.815 61.111 6.13 0.00 45.59 3.36
1197 2689 1.436336 GCTCGCGGTTAGCTTCCTA 59.564 57.895 6.13 0.00 45.59 2.94
1198 2690 0.179119 GCTCGCGGTTAGCTTCCTAA 60.179 55.000 6.13 0.00 45.59 2.69
1199 2691 1.538419 GCTCGCGGTTAGCTTCCTAAT 60.538 52.381 6.13 0.00 45.59 1.73
1200 2692 2.288030 GCTCGCGGTTAGCTTCCTAATA 60.288 50.000 6.13 0.00 45.59 0.98
1201 2693 3.306818 CTCGCGGTTAGCTTCCTAATAC 58.693 50.000 6.13 0.00 45.59 1.89
1202 2694 2.954318 TCGCGGTTAGCTTCCTAATACT 59.046 45.455 6.13 0.00 45.59 2.12
1203 2695 3.004106 TCGCGGTTAGCTTCCTAATACTC 59.996 47.826 6.13 0.00 45.59 2.59
1204 2696 3.651206 GCGGTTAGCTTCCTAATACTCC 58.349 50.000 0.00 0.00 44.04 3.85
1205 2697 3.554544 GCGGTTAGCTTCCTAATACTCCC 60.555 52.174 0.00 0.00 44.04 4.30
1206 2698 3.896272 CGGTTAGCTTCCTAATACTCCCT 59.104 47.826 0.00 0.00 36.06 4.20
1207 2699 4.344390 CGGTTAGCTTCCTAATACTCCCTT 59.656 45.833 0.00 0.00 36.06 3.95
1208 2700 5.509332 CGGTTAGCTTCCTAATACTCCCTTC 60.509 48.000 0.00 0.00 36.06 3.46
1209 2701 5.509332 GGTTAGCTTCCTAATACTCCCTTCG 60.509 48.000 0.00 0.00 36.06 3.79
1210 2702 3.644335 AGCTTCCTAATACTCCCTTCGT 58.356 45.455 0.00 0.00 0.00 3.85
1211 2703 3.637694 AGCTTCCTAATACTCCCTTCGTC 59.362 47.826 0.00 0.00 0.00 4.20
1212 2704 3.243805 GCTTCCTAATACTCCCTTCGTCC 60.244 52.174 0.00 0.00 0.00 4.79
1213 2705 2.954792 TCCTAATACTCCCTTCGTCCC 58.045 52.381 0.00 0.00 0.00 4.46
1214 2706 2.245546 TCCTAATACTCCCTTCGTCCCA 59.754 50.000 0.00 0.00 0.00 4.37
1215 2707 3.036091 CCTAATACTCCCTTCGTCCCAA 58.964 50.000 0.00 0.00 0.00 4.12
1216 2708 3.453353 CCTAATACTCCCTTCGTCCCAAA 59.547 47.826 0.00 0.00 0.00 3.28
1217 2709 4.080751 CCTAATACTCCCTTCGTCCCAAAA 60.081 45.833 0.00 0.00 0.00 2.44
1218 2710 4.586306 AATACTCCCTTCGTCCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
1219 2711 2.971901 ACTCCCTTCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
1220 2712 2.791655 ACTCCCTTCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
1221 2713 2.375509 ACTCCCTTCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
1222 2714 3.181433 ACTCCCTTCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
1223 2715 3.153919 TCCCTTCGTCCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
1224 2716 2.890945 CCCTTCGTCCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
1225 2717 3.057526 CCCTTCGTCCCAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
1226 2718 3.821033 CCTTCGTCCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
1227 2719 4.278419 CCTTCGTCCCAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
1228 2720 5.472137 CCTTCGTCCCAAAATTCTTGTCTTA 59.528 40.000 0.00 0.00 0.00 2.10
1229 2721 6.348540 CCTTCGTCCCAAAATTCTTGTCTTAG 60.349 42.308 0.00 0.00 0.00 2.18
1230 2722 5.860611 TCGTCCCAAAATTCTTGTCTTAGA 58.139 37.500 0.00 0.00 0.00 2.10
1231 2723 6.472887 TCGTCCCAAAATTCTTGTCTTAGAT 58.527 36.000 0.00 0.00 0.00 1.98
1232 2724 6.940298 TCGTCCCAAAATTCTTGTCTTAGATT 59.060 34.615 0.00 0.00 0.00 2.40
1233 2725 7.447238 TCGTCCCAAAATTCTTGTCTTAGATTT 59.553 33.333 0.00 0.00 0.00 2.17
1234 2726 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1235 2727 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1236 2728 8.923270 TCCCAAAATTCTTGTCTTAGATTTGTT 58.077 29.630 0.00 0.00 28.79 2.83
1237 2729 9.546428 CCCAAAATTCTTGTCTTAGATTTGTTT 57.454 29.630 0.00 0.00 28.79 2.83
1245 2737 9.582431 TCTTGTCTTAGATTTGTTTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
1246 2738 9.582431 CTTGTCTTAGATTTGTTTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
1248 2740 9.529325 TGTCTTAGATTTGTTTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
1249 2741 9.530633 GTCTTAGATTTGTTTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
1261 2753 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
1262 2754 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
1263 2755 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
1264 2756 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
1265 2757 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
1266 2758 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
1267 2759 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
1268 2760 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
1269 2761 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
1270 2762 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
1313 2805 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1314 2806 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1315 2807 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1316 2808 8.359642 CAAATCTAAGACAAGAATTTTGGGACA 58.640 33.333 5.68 0.00 28.49 4.02
1317 2809 7.693969 ATCTAAGACAAGAATTTTGGGACAG 57.306 36.000 5.68 0.00 42.39 3.51
1318 2810 6.837312 TCTAAGACAAGAATTTTGGGACAGA 58.163 36.000 5.68 0.00 42.39 3.41
1319 2811 6.936900 TCTAAGACAAGAATTTTGGGACAGAG 59.063 38.462 5.68 0.00 42.39 3.35
1320 2812 4.401925 AGACAAGAATTTTGGGACAGAGG 58.598 43.478 5.68 0.00 42.39 3.69
1321 2813 3.500343 ACAAGAATTTTGGGACAGAGGG 58.500 45.455 5.68 0.00 42.39 4.30
1322 2814 3.140144 ACAAGAATTTTGGGACAGAGGGA 59.860 43.478 5.68 0.00 42.39 4.20
1323 2815 3.728385 AGAATTTTGGGACAGAGGGAG 57.272 47.619 0.00 0.00 42.39 4.30
1327 2819 3.269592 TTTTGGGACAGAGGGAGTAGA 57.730 47.619 0.00 0.00 42.39 2.59
1335 2827 2.703007 ACAGAGGGAGTAGAATGGATGC 59.297 50.000 0.00 0.00 0.00 3.91
1338 2830 1.689273 AGGGAGTAGAATGGATGCGTC 59.311 52.381 0.00 0.00 0.00 5.19
1465 4063 0.744414 TCCTAATTGCTCAGGCGTGC 60.744 55.000 0.35 0.00 42.25 5.34
1546 4144 8.861086 TGCACATAGAAAATGGTTTAGGTTAAA 58.139 29.630 0.00 0.00 0.00 1.52
1547 4145 9.353999 GCACATAGAAAATGGTTTAGGTTAAAG 57.646 33.333 0.00 0.00 0.00 1.85
1548 4146 9.353999 CACATAGAAAATGGTTTAGGTTAAAGC 57.646 33.333 4.33 4.33 44.16 3.51
1549 4147 9.309224 ACATAGAAAATGGTTTAGGTTAAAGCT 57.691 29.630 10.83 0.00 44.21 3.74
1563 4161 6.973229 GGTTAAAGCTAACCGTTAGATTGA 57.027 37.500 19.70 11.59 45.91 2.57
1564 4162 7.549615 GGTTAAAGCTAACCGTTAGATTGAT 57.450 36.000 19.70 9.80 45.91 2.57
1565 4163 7.982224 GGTTAAAGCTAACCGTTAGATTGATT 58.018 34.615 19.70 9.19 45.91 2.57
1566 4164 8.456471 GGTTAAAGCTAACCGTTAGATTGATTT 58.544 33.333 19.70 8.89 45.91 2.17
1567 4165 9.836076 GTTAAAGCTAACCGTTAGATTGATTTT 57.164 29.630 19.70 8.58 40.66 1.82
1570 4168 8.788325 AAGCTAACCGTTAGATTGATTTTAGT 57.212 30.769 18.60 0.00 40.09 2.24
1571 4169 8.197988 AGCTAACCGTTAGATTGATTTTAGTG 57.802 34.615 20.39 0.00 35.20 2.74
1572 4170 7.280205 AGCTAACCGTTAGATTGATTTTAGTGG 59.720 37.037 20.39 0.00 35.20 4.00
1573 4171 6.753107 AACCGTTAGATTGATTTTAGTGGG 57.247 37.500 0.00 0.00 0.00 4.61
1574 4172 4.638865 ACCGTTAGATTGATTTTAGTGGGC 59.361 41.667 0.00 0.00 0.00 5.36
1575 4173 4.036380 CCGTTAGATTGATTTTAGTGGGCC 59.964 45.833 0.00 0.00 0.00 5.80
1576 4174 4.881850 CGTTAGATTGATTTTAGTGGGCCT 59.118 41.667 4.53 0.00 0.00 5.19
1577 4175 6.053005 CGTTAGATTGATTTTAGTGGGCCTA 58.947 40.000 4.53 0.00 0.00 3.93
1578 4176 6.540914 CGTTAGATTGATTTTAGTGGGCCTAA 59.459 38.462 4.53 0.00 33.77 2.69
1579 4177 7.228706 CGTTAGATTGATTTTAGTGGGCCTAAT 59.771 37.037 4.53 0.00 35.59 1.73
1580 4178 8.568794 GTTAGATTGATTTTAGTGGGCCTAATC 58.431 37.037 4.53 6.97 35.59 1.75
1581 4179 5.765182 AGATTGATTTTAGTGGGCCTAATCG 59.235 40.000 4.53 0.00 35.59 3.34
1582 4180 4.497291 TGATTTTAGTGGGCCTAATCGT 57.503 40.909 4.53 0.00 35.59 3.73
1583 4181 4.196193 TGATTTTAGTGGGCCTAATCGTG 58.804 43.478 4.53 0.00 35.59 4.35
1584 4182 2.032680 TTTAGTGGGCCTAATCGTGC 57.967 50.000 4.53 0.00 35.59 5.34
1585 4183 0.179094 TTAGTGGGCCTAATCGTGCG 60.179 55.000 4.53 0.00 30.55 5.34
1586 4184 2.023414 TAGTGGGCCTAATCGTGCGG 62.023 60.000 4.53 0.00 0.00 5.69
1587 4185 3.395702 TGGGCCTAATCGTGCGGT 61.396 61.111 4.53 0.00 0.00 5.68
1588 4186 2.895372 GGGCCTAATCGTGCGGTG 60.895 66.667 0.84 0.00 0.00 4.94
1589 4187 2.895372 GGCCTAATCGTGCGGTGG 60.895 66.667 0.00 0.00 0.00 4.61
1590 4188 2.125269 GCCTAATCGTGCGGTGGT 60.125 61.111 0.00 0.00 0.00 4.16
1591 4189 1.142314 GCCTAATCGTGCGGTGGTA 59.858 57.895 0.00 0.00 0.00 3.25
1592 4190 0.460635 GCCTAATCGTGCGGTGGTAA 60.461 55.000 0.00 0.00 0.00 2.85
1593 4191 1.808891 GCCTAATCGTGCGGTGGTAAT 60.809 52.381 0.00 0.00 0.00 1.89
1594 4192 1.864711 CCTAATCGTGCGGTGGTAATG 59.135 52.381 0.00 0.00 0.00 1.90
1595 4193 1.864711 CTAATCGTGCGGTGGTAATGG 59.135 52.381 0.00 0.00 0.00 3.16
1596 4194 0.250793 AATCGTGCGGTGGTAATGGA 59.749 50.000 0.00 0.00 0.00 3.41
1597 4195 0.468226 ATCGTGCGGTGGTAATGGAT 59.532 50.000 0.00 0.00 0.00 3.41
1598 4196 0.179094 TCGTGCGGTGGTAATGGATC 60.179 55.000 0.00 0.00 0.00 3.36
1599 4197 0.179084 CGTGCGGTGGTAATGGATCT 60.179 55.000 0.00 0.00 0.00 2.75
1600 4198 1.299541 GTGCGGTGGTAATGGATCTG 58.700 55.000 0.00 0.00 0.00 2.90
1601 4199 0.908910 TGCGGTGGTAATGGATCTGT 59.091 50.000 0.00 0.00 0.00 3.41
1602 4200 1.299541 GCGGTGGTAATGGATCTGTG 58.700 55.000 0.00 0.00 0.00 3.66
1603 4201 1.406887 GCGGTGGTAATGGATCTGTGT 60.407 52.381 0.00 0.00 0.00 3.72
1604 4202 2.159014 GCGGTGGTAATGGATCTGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
1605 4203 3.454375 CGGTGGTAATGGATCTGTGTAC 58.546 50.000 0.00 0.00 0.00 2.90
1606 4204 3.454375 GGTGGTAATGGATCTGTGTACG 58.546 50.000 0.00 0.00 0.00 3.67
1607 4205 2.864343 GTGGTAATGGATCTGTGTACGC 59.136 50.000 0.00 0.00 0.00 4.42
1608 4206 2.764010 TGGTAATGGATCTGTGTACGCT 59.236 45.455 8.10 0.00 0.00 5.07
1609 4207 3.196901 TGGTAATGGATCTGTGTACGCTT 59.803 43.478 8.10 0.00 0.00 4.68
1610 4208 4.189231 GGTAATGGATCTGTGTACGCTTT 58.811 43.478 8.10 0.00 0.00 3.51
1611 4209 4.034048 GGTAATGGATCTGTGTACGCTTTG 59.966 45.833 8.10 0.00 0.00 2.77
1612 4210 2.831685 TGGATCTGTGTACGCTTTGT 57.168 45.000 8.10 0.00 0.00 2.83
1613 4211 2.412870 TGGATCTGTGTACGCTTTGTG 58.587 47.619 8.10 0.00 0.00 3.33
1614 4212 1.732259 GGATCTGTGTACGCTTTGTGG 59.268 52.381 8.10 0.00 0.00 4.17
1615 4213 1.732259 GATCTGTGTACGCTTTGTGGG 59.268 52.381 8.10 0.00 0.00 4.61
1616 4214 0.753867 TCTGTGTACGCTTTGTGGGA 59.246 50.000 8.10 0.00 0.00 4.37
1617 4215 1.346395 TCTGTGTACGCTTTGTGGGAT 59.654 47.619 8.10 0.00 0.00 3.85
1618 4216 1.464608 CTGTGTACGCTTTGTGGGATG 59.535 52.381 8.10 0.00 0.00 3.51
1619 4217 1.202710 TGTGTACGCTTTGTGGGATGT 60.203 47.619 8.10 0.00 0.00 3.06
1620 4218 1.196808 GTGTACGCTTTGTGGGATGTG 59.803 52.381 0.00 0.00 0.00 3.21
1621 4219 0.168128 GTACGCTTTGTGGGATGTGC 59.832 55.000 0.00 0.00 0.00 4.57
1622 4220 0.036164 TACGCTTTGTGGGATGTGCT 59.964 50.000 0.00 0.00 0.00 4.40
1623 4221 0.823356 ACGCTTTGTGGGATGTGCTT 60.823 50.000 0.00 0.00 0.00 3.91
1624 4222 1.164411 CGCTTTGTGGGATGTGCTTA 58.836 50.000 0.00 0.00 0.00 3.09
1625 4223 1.131126 CGCTTTGTGGGATGTGCTTAG 59.869 52.381 0.00 0.00 0.00 2.18
1626 4224 1.474077 GCTTTGTGGGATGTGCTTAGG 59.526 52.381 0.00 0.00 0.00 2.69
1627 4225 2.795329 CTTTGTGGGATGTGCTTAGGT 58.205 47.619 0.00 0.00 0.00 3.08
1628 4226 2.969821 TTGTGGGATGTGCTTAGGTT 57.030 45.000 0.00 0.00 0.00 3.50
1629 4227 2.969821 TGTGGGATGTGCTTAGGTTT 57.030 45.000 0.00 0.00 0.00 3.27
1630 4228 4.374689 TTGTGGGATGTGCTTAGGTTTA 57.625 40.909 0.00 0.00 0.00 2.01
1631 4229 3.950397 TGTGGGATGTGCTTAGGTTTAG 58.050 45.455 0.00 0.00 0.00 1.85
1632 4230 3.279434 GTGGGATGTGCTTAGGTTTAGG 58.721 50.000 0.00 0.00 0.00 2.69
1633 4231 2.241176 TGGGATGTGCTTAGGTTTAGGG 59.759 50.000 0.00 0.00 0.00 3.53
1634 4232 2.241430 GGGATGTGCTTAGGTTTAGGGT 59.759 50.000 0.00 0.00 0.00 4.34
1635 4233 3.308904 GGGATGTGCTTAGGTTTAGGGTT 60.309 47.826 0.00 0.00 0.00 4.11
1636 4234 4.341487 GGATGTGCTTAGGTTTAGGGTTT 58.659 43.478 0.00 0.00 0.00 3.27
1637 4235 5.503002 GGATGTGCTTAGGTTTAGGGTTTA 58.497 41.667 0.00 0.00 0.00 2.01
1638 4236 5.947566 GGATGTGCTTAGGTTTAGGGTTTAA 59.052 40.000 0.00 0.00 0.00 1.52
1639 4237 6.095021 GGATGTGCTTAGGTTTAGGGTTTAAG 59.905 42.308 0.00 0.00 0.00 1.85
1640 4238 5.318630 TGTGCTTAGGTTTAGGGTTTAAGG 58.681 41.667 0.00 0.00 0.00 2.69
1641 4239 5.163066 TGTGCTTAGGTTTAGGGTTTAAGGT 60.163 40.000 0.00 0.00 0.00 3.50
1642 4240 5.771666 GTGCTTAGGTTTAGGGTTTAAGGTT 59.228 40.000 0.00 0.00 0.00 3.50
1643 4241 6.266103 GTGCTTAGGTTTAGGGTTTAAGGTTT 59.734 38.462 0.00 0.00 0.00 3.27
1644 4242 7.448161 GTGCTTAGGTTTAGGGTTTAAGGTTTA 59.552 37.037 0.00 0.00 0.00 2.01
1645 4243 7.666804 TGCTTAGGTTTAGGGTTTAAGGTTTAG 59.333 37.037 0.00 0.00 0.00 1.85
1646 4244 7.121759 GCTTAGGTTTAGGGTTTAAGGTTTAGG 59.878 40.741 0.00 0.00 0.00 2.69
1647 4245 5.895807 AGGTTTAGGGTTTAAGGTTTAGGG 58.104 41.667 0.00 0.00 0.00 3.53
1648 4246 5.376559 AGGTTTAGGGTTTAAGGTTTAGGGT 59.623 40.000 0.00 0.00 0.00 4.34
1649 4247 6.077322 GGTTTAGGGTTTAAGGTTTAGGGTT 58.923 40.000 0.00 0.00 0.00 4.11
1650 4248 6.554605 GGTTTAGGGTTTAAGGTTTAGGGTTT 59.445 38.462 0.00 0.00 0.00 3.27
1651 4249 7.728083 GGTTTAGGGTTTAAGGTTTAGGGTTTA 59.272 37.037 0.00 0.00 0.00 2.01
1652 4250 8.796475 GTTTAGGGTTTAAGGTTTAGGGTTTAG 58.204 37.037 0.00 0.00 0.00 1.85
1653 4251 5.895807 AGGGTTTAAGGTTTAGGGTTTAGG 58.104 41.667 0.00 0.00 0.00 2.69
1654 4252 5.376559 AGGGTTTAAGGTTTAGGGTTTAGGT 59.623 40.000 0.00 0.00 0.00 3.08
1655 4253 6.077322 GGGTTTAAGGTTTAGGGTTTAGGTT 58.923 40.000 0.00 0.00 0.00 3.50
1656 4254 7.074880 AGGGTTTAAGGTTTAGGGTTTAGGTTA 59.925 37.037 0.00 0.00 0.00 2.85
1657 4255 7.728083 GGGTTTAAGGTTTAGGGTTTAGGTTAA 59.272 37.037 0.00 0.00 0.00 2.01
1704 4302 0.460635 GCCTAATCGTGCGGTGGTAA 60.461 55.000 0.00 0.00 0.00 2.85
1750 4349 6.239036 GGGATGTGCTTAAAGAAGTTCTTGTT 60.239 38.462 18.70 6.95 36.71 2.83
1751 4350 7.203218 GGATGTGCTTAAAGAAGTTCTTGTTT 58.797 34.615 18.70 6.23 36.71 2.83
1752 4351 7.168135 GGATGTGCTTAAAGAAGTTCTTGTTTG 59.832 37.037 18.70 10.41 36.71 2.93
1753 4352 7.151999 TGTGCTTAAAGAAGTTCTTGTTTGA 57.848 32.000 18.70 8.15 36.71 2.69
1754 4353 7.771183 TGTGCTTAAAGAAGTTCTTGTTTGAT 58.229 30.769 18.70 4.81 36.71 2.57
1755 4354 8.250332 TGTGCTTAAAGAAGTTCTTGTTTGATT 58.750 29.630 18.70 4.10 36.71 2.57
1756 4355 9.730420 GTGCTTAAAGAAGTTCTTGTTTGATTA 57.270 29.630 18.70 3.14 36.71 1.75
1806 4405 9.225436 GGATGGATTTATCTGAGATTAGTTTCC 57.775 37.037 0.00 1.93 0.00 3.13
1817 4416 9.094578 TCTGAGATTAGTTTCCTAATAGGATGG 57.905 37.037 10.21 0.00 45.34 3.51
1818 4417 9.094578 CTGAGATTAGTTTCCTAATAGGATGGA 57.905 37.037 10.21 0.00 45.34 3.41
1819 4418 9.621239 TGAGATTAGTTTCCTAATAGGATGGAT 57.379 33.333 10.21 1.01 45.34 3.41
1820 4419 9.883142 GAGATTAGTTTCCTAATAGGATGGATG 57.117 37.037 10.21 0.00 45.34 3.51
1821 4420 8.325046 AGATTAGTTTCCTAATAGGATGGATGC 58.675 37.037 10.21 0.00 45.34 3.91
1822 4421 5.912149 AGTTTCCTAATAGGATGGATGCA 57.088 39.130 10.21 0.00 45.34 3.96
1823 4422 5.625150 AGTTTCCTAATAGGATGGATGCAC 58.375 41.667 10.21 0.00 45.34 4.57
1824 4423 5.370880 AGTTTCCTAATAGGATGGATGCACT 59.629 40.000 10.21 1.89 45.34 4.40
1825 4424 5.489792 TTCCTAATAGGATGGATGCACTC 57.510 43.478 10.21 0.00 45.34 3.51
1826 4425 4.756564 TCCTAATAGGATGGATGCACTCT 58.243 43.478 4.61 0.00 40.06 3.24
1827 4426 4.529769 TCCTAATAGGATGGATGCACTCTG 59.470 45.833 4.61 0.00 40.06 3.35
1828 4427 4.529769 CCTAATAGGATGGATGCACTCTGA 59.470 45.833 0.00 0.00 37.67 3.27
1829 4428 5.189342 CCTAATAGGATGGATGCACTCTGAT 59.811 44.000 0.00 0.00 37.67 2.90
1830 4429 5.579753 AATAGGATGGATGCACTCTGATT 57.420 39.130 0.00 0.00 0.00 2.57
1831 4430 3.947612 AGGATGGATGCACTCTGATTT 57.052 42.857 0.00 0.00 0.00 2.17
1832 4431 6.692849 ATAGGATGGATGCACTCTGATTTA 57.307 37.500 0.00 0.00 0.00 1.40
1833 4432 4.970711 AGGATGGATGCACTCTGATTTAG 58.029 43.478 0.00 0.00 0.00 1.85
1834 4433 4.411540 AGGATGGATGCACTCTGATTTAGT 59.588 41.667 0.00 0.00 0.00 2.24
1835 4434 5.104193 AGGATGGATGCACTCTGATTTAGTT 60.104 40.000 0.00 0.00 0.00 2.24
1836 4435 5.591877 GGATGGATGCACTCTGATTTAGTTT 59.408 40.000 0.00 0.00 0.00 2.66
1837 4436 6.238593 GGATGGATGCACTCTGATTTAGTTTC 60.239 42.308 0.00 0.00 0.00 2.78
1838 4437 4.943705 TGGATGCACTCTGATTTAGTTTCC 59.056 41.667 0.00 0.00 0.00 3.13
1839 4438 5.189180 GGATGCACTCTGATTTAGTTTCCT 58.811 41.667 0.00 0.00 0.00 3.36
1840 4439 6.070251 TGGATGCACTCTGATTTAGTTTCCTA 60.070 38.462 0.00 0.00 0.00 2.94
1841 4440 6.823689 GGATGCACTCTGATTTAGTTTCCTAA 59.176 38.462 0.00 0.00 0.00 2.69
1842 4441 7.336931 GGATGCACTCTGATTTAGTTTCCTAAA 59.663 37.037 0.00 0.00 44.89 1.85
1843 4442 8.635765 ATGCACTCTGATTTAGTTTCCTAAAA 57.364 30.769 0.00 0.00 44.20 1.52
1844 4443 8.635765 TGCACTCTGATTTAGTTTCCTAAAAT 57.364 30.769 0.00 0.00 44.20 1.82
1845 4444 9.733556 TGCACTCTGATTTAGTTTCCTAAAATA 57.266 29.630 0.00 0.00 44.20 1.40
1859 4458 2.799126 AAAATAGGATGCACCCGTGA 57.201 45.000 0.00 0.00 40.05 4.35
1860 4459 3.297134 AAAATAGGATGCACCCGTGAT 57.703 42.857 0.00 0.00 40.05 3.06
1861 4460 3.297134 AAATAGGATGCACCCGTGATT 57.703 42.857 0.00 0.00 40.05 2.57
1862 4461 4.431416 AAATAGGATGCACCCGTGATTA 57.569 40.909 0.00 0.00 40.05 1.75
1863 4462 4.640771 AATAGGATGCACCCGTGATTAT 57.359 40.909 0.00 0.00 40.05 1.28
1864 4463 4.640771 ATAGGATGCACCCGTGATTATT 57.359 40.909 0.00 0.00 40.05 1.40
1865 4464 5.755409 ATAGGATGCACCCGTGATTATTA 57.245 39.130 0.00 0.00 40.05 0.98
1866 4465 4.008074 AGGATGCACCCGTGATTATTAG 57.992 45.455 0.00 0.00 40.05 1.73
1867 4466 3.391296 AGGATGCACCCGTGATTATTAGT 59.609 43.478 0.00 0.00 40.05 2.24
1868 4467 4.134563 GGATGCACCCGTGATTATTAGTT 58.865 43.478 0.00 0.00 0.00 2.24
1869 4468 4.578928 GGATGCACCCGTGATTATTAGTTT 59.421 41.667 0.00 0.00 0.00 2.66
1870 4469 5.277828 GGATGCACCCGTGATTATTAGTTTC 60.278 44.000 0.00 0.00 0.00 2.78
1871 4470 3.942748 TGCACCCGTGATTATTAGTTTCC 59.057 43.478 0.00 0.00 0.00 3.13
1872 4471 4.196971 GCACCCGTGATTATTAGTTTCCT 58.803 43.478 0.00 0.00 0.00 3.36
1873 4472 5.104859 TGCACCCGTGATTATTAGTTTCCTA 60.105 40.000 0.00 0.00 0.00 2.94
1874 4473 5.818857 GCACCCGTGATTATTAGTTTCCTAA 59.181 40.000 0.00 0.00 37.56 2.69
1875 4474 6.485648 GCACCCGTGATTATTAGTTTCCTAAT 59.514 38.462 0.00 0.00 44.29 1.73
1876 4475 7.012989 GCACCCGTGATTATTAGTTTCCTAATT 59.987 37.037 0.00 0.00 40.25 1.40
1877 4476 8.342634 CACCCGTGATTATTAGTTTCCTAATTG 58.657 37.037 0.73 0.00 40.25 2.32
1878 4477 7.012989 ACCCGTGATTATTAGTTTCCTAATTGC 59.987 37.037 0.73 0.00 40.25 3.56
1879 4478 7.228706 CCCGTGATTATTAGTTTCCTAATTGCT 59.771 37.037 0.73 0.00 40.25 3.91
1880 4479 8.283291 CCGTGATTATTAGTTTCCTAATTGCTC 58.717 37.037 0.73 0.00 40.25 4.26
1881 4480 8.826710 CGTGATTATTAGTTTCCTAATTGCTCA 58.173 33.333 0.73 0.82 40.25 4.26
1883 4482 9.905713 TGATTATTAGTTTCCTAATTGCTCAGT 57.094 29.630 0.73 0.00 40.25 3.41
1885 4484 9.905713 ATTATTAGTTTCCTAATTGCTCAGTCA 57.094 29.630 0.73 0.00 40.25 3.41
1886 4485 9.905713 TTATTAGTTTCCTAATTGCTCAGTCAT 57.094 29.630 0.73 0.00 40.25 3.06
1887 4486 7.615582 TTAGTTTCCTAATTGCTCAGTCATG 57.384 36.000 0.00 0.00 0.00 3.07
1888 4487 4.946157 AGTTTCCTAATTGCTCAGTCATGG 59.054 41.667 0.00 0.00 0.00 3.66
1889 4488 4.842531 TTCCTAATTGCTCAGTCATGGA 57.157 40.909 0.00 0.00 0.00 3.41
1890 4489 4.412796 TCCTAATTGCTCAGTCATGGAG 57.587 45.455 0.00 0.00 35.47 3.86
1891 4490 3.776969 TCCTAATTGCTCAGTCATGGAGT 59.223 43.478 0.00 0.00 34.83 3.85
1892 4491 4.225942 TCCTAATTGCTCAGTCATGGAGTT 59.774 41.667 0.00 0.00 34.83 3.01
1893 4492 4.946157 CCTAATTGCTCAGTCATGGAGTTT 59.054 41.667 0.00 0.00 34.83 2.66
1894 4493 5.065731 CCTAATTGCTCAGTCATGGAGTTTC 59.934 44.000 0.00 0.00 34.83 2.78
1895 4494 3.490439 TTGCTCAGTCATGGAGTTTCA 57.510 42.857 0.00 0.00 34.83 2.69
1896 4495 3.708403 TGCTCAGTCATGGAGTTTCAT 57.292 42.857 0.00 0.00 34.83 2.57
1897 4496 4.824479 TGCTCAGTCATGGAGTTTCATA 57.176 40.909 0.00 0.00 34.83 2.15
1898 4497 5.363562 TGCTCAGTCATGGAGTTTCATAT 57.636 39.130 0.00 0.00 34.83 1.78
1899 4498 5.748402 TGCTCAGTCATGGAGTTTCATATT 58.252 37.500 0.00 0.00 34.83 1.28
1900 4499 6.182627 TGCTCAGTCATGGAGTTTCATATTT 58.817 36.000 0.00 0.00 34.83 1.40
1901 4500 6.660521 TGCTCAGTCATGGAGTTTCATATTTT 59.339 34.615 0.00 0.00 34.83 1.82
1902 4501 7.148188 TGCTCAGTCATGGAGTTTCATATTTTC 60.148 37.037 0.00 0.00 34.83 2.29
1903 4502 7.630242 TCAGTCATGGAGTTTCATATTTTCC 57.370 36.000 0.00 0.00 0.00 3.13
1904 4503 7.405292 TCAGTCATGGAGTTTCATATTTTCCT 58.595 34.615 0.00 0.00 0.00 3.36
1905 4504 7.554118 TCAGTCATGGAGTTTCATATTTTCCTC 59.446 37.037 0.00 0.00 0.00 3.71
1906 4505 6.830838 AGTCATGGAGTTTCATATTTTCCTCC 59.169 38.462 0.00 0.00 39.13 4.30
1909 4508 4.941263 TGGAGTTTCATATTTTCCTCCACG 59.059 41.667 0.00 0.00 42.54 4.94
1910 4509 4.335594 GGAGTTTCATATTTTCCTCCACGG 59.664 45.833 0.00 0.00 38.65 4.94
1911 4510 4.918588 AGTTTCATATTTTCCTCCACGGT 58.081 39.130 0.00 0.00 0.00 4.83
1912 4511 4.700213 AGTTTCATATTTTCCTCCACGGTG 59.300 41.667 0.00 0.00 0.00 4.94
1913 4512 3.275617 TCATATTTTCCTCCACGGTGG 57.724 47.619 21.27 21.27 39.43 4.61
1914 4513 2.841266 TCATATTTTCCTCCACGGTGGA 59.159 45.455 27.17 27.17 45.98 4.02
1923 4522 1.634960 TCCACGGTGGAGTACAATCA 58.365 50.000 25.53 0.19 42.67 2.57
1924 4523 1.548719 TCCACGGTGGAGTACAATCAG 59.451 52.381 25.53 0.00 42.67 2.90
1925 4524 1.275291 CCACGGTGGAGTACAATCAGT 59.725 52.381 22.77 0.00 40.96 3.41
1926 4525 2.607187 CACGGTGGAGTACAATCAGTC 58.393 52.381 0.00 0.00 0.00 3.51
1927 4526 2.029380 CACGGTGGAGTACAATCAGTCA 60.029 50.000 0.00 0.00 0.00 3.41
1928 4527 2.631062 ACGGTGGAGTACAATCAGTCAA 59.369 45.455 0.00 0.00 0.00 3.18
1929 4528 3.260884 ACGGTGGAGTACAATCAGTCAAT 59.739 43.478 0.00 0.00 0.00 2.57
1930 4529 3.618594 CGGTGGAGTACAATCAGTCAATG 59.381 47.826 0.00 0.00 0.00 2.82
1931 4530 4.579869 GGTGGAGTACAATCAGTCAATGT 58.420 43.478 0.00 0.00 0.00 2.71
1932 4531 5.623596 CGGTGGAGTACAATCAGTCAATGTA 60.624 44.000 0.00 0.00 0.00 2.29
1933 4532 6.170506 GGTGGAGTACAATCAGTCAATGTAA 58.829 40.000 0.00 0.00 31.85 2.41
1934 4533 6.653320 GGTGGAGTACAATCAGTCAATGTAAA 59.347 38.462 0.00 0.00 31.85 2.01
1935 4534 7.336931 GGTGGAGTACAATCAGTCAATGTAAAT 59.663 37.037 0.00 0.00 31.85 1.40
1936 4535 8.730680 GTGGAGTACAATCAGTCAATGTAAATT 58.269 33.333 0.00 0.00 31.85 1.82
1937 4536 8.729756 TGGAGTACAATCAGTCAATGTAAATTG 58.270 33.333 0.00 0.00 31.85 2.32
1938 4537 7.698130 GGAGTACAATCAGTCAATGTAAATTGC 59.302 37.037 0.22 0.00 31.85 3.56
1939 4538 8.340618 AGTACAATCAGTCAATGTAAATTGCT 57.659 30.769 0.22 0.00 31.85 3.91
1940 4539 9.448438 AGTACAATCAGTCAATGTAAATTGCTA 57.552 29.630 0.22 0.00 31.85 3.49
1943 4542 8.796475 ACAATCAGTCAATGTAAATTGCTAAGT 58.204 29.630 0.22 0.00 28.40 2.24
1944 4543 9.069078 CAATCAGTCAATGTAAATTGCTAAGTG 57.931 33.333 0.22 0.00 0.00 3.16
1945 4544 6.611381 TCAGTCAATGTAAATTGCTAAGTGC 58.389 36.000 0.22 0.00 43.25 4.40
1983 4582 9.676861 AGTTTAAATTAAGGCTAACCGTTAGAT 57.323 29.630 20.39 9.04 42.76 1.98
1986 4585 9.669887 TTAAATTAAGGCTAACCGTTAGATTGA 57.330 29.630 20.39 11.45 42.76 2.57
1987 4586 8.747538 AAATTAAGGCTAACCGTTAGATTGAT 57.252 30.769 20.39 12.88 42.76 2.57
1988 4587 8.747538 AATTAAGGCTAACCGTTAGATTGATT 57.252 30.769 20.39 16.76 42.76 2.57
1989 4588 8.747538 ATTAAGGCTAACCGTTAGATTGATTT 57.252 30.769 20.39 7.99 42.76 2.17
1990 4589 8.570068 TTAAGGCTAACCGTTAGATTGATTTT 57.430 30.769 20.39 6.90 42.76 1.82
1991 4590 9.669887 TTAAGGCTAACCGTTAGATTGATTTTA 57.330 29.630 20.39 6.15 42.76 1.52
1992 4591 7.787725 AGGCTAACCGTTAGATTGATTTTAG 57.212 36.000 20.39 0.00 42.76 1.85
1993 4592 7.336396 AGGCTAACCGTTAGATTGATTTTAGT 58.664 34.615 20.39 0.00 42.76 2.24
1994 4593 7.280205 AGGCTAACCGTTAGATTGATTTTAGTG 59.720 37.037 20.39 0.00 42.76 2.74
1995 4594 7.279313 GGCTAACCGTTAGATTGATTTTAGTGA 59.721 37.037 20.39 0.00 35.20 3.41
1996 4595 8.328864 GCTAACCGTTAGATTGATTTTAGTGAG 58.671 37.037 20.39 0.00 35.20 3.51
1997 4596 7.611213 AACCGTTAGATTGATTTTAGTGAGG 57.389 36.000 0.00 0.00 0.00 3.86
1998 4597 5.585047 ACCGTTAGATTGATTTTAGTGAGGC 59.415 40.000 0.00 0.00 0.00 4.70
1999 4598 5.817816 CCGTTAGATTGATTTTAGTGAGGCT 59.182 40.000 0.00 0.00 0.00 4.58
2000 4599 6.984474 CCGTTAGATTGATTTTAGTGAGGCTA 59.016 38.462 0.00 0.00 0.00 3.93
2001 4600 7.494625 CCGTTAGATTGATTTTAGTGAGGCTAA 59.505 37.037 0.00 0.00 37.86 3.09
2002 4601 9.046296 CGTTAGATTGATTTTAGTGAGGCTAAT 57.954 33.333 0.00 0.00 39.23 1.73
2004 4603 7.721286 AGATTGATTTTAGTGAGGCTAATCG 57.279 36.000 0.00 0.00 39.23 3.34
2005 4604 7.275920 AGATTGATTTTAGTGAGGCTAATCGT 58.724 34.615 0.00 0.00 39.23 3.73
2006 4605 6.662414 TTGATTTTAGTGAGGCTAATCGTG 57.338 37.500 0.00 0.00 39.23 4.35
2007 4606 4.570772 TGATTTTAGTGAGGCTAATCGTGC 59.429 41.667 0.00 0.00 39.23 5.34
2008 4607 2.203800 TTAGTGAGGCTAATCGTGCG 57.796 50.000 0.00 0.00 34.95 5.34
2009 4608 0.384309 TAGTGAGGCTAATCGTGCGG 59.616 55.000 0.00 0.00 0.00 5.69
2010 4609 1.153628 GTGAGGCTAATCGTGCGGT 60.154 57.895 0.00 0.00 0.00 5.68
2011 4610 1.153647 TGAGGCTAATCGTGCGGTG 60.154 57.895 0.00 0.00 0.00 4.94
2012 4611 1.883084 GAGGCTAATCGTGCGGTGG 60.883 63.158 0.00 0.00 0.00 4.61
2013 4612 2.125269 GGCTAATCGTGCGGTGGT 60.125 61.111 0.00 0.00 0.00 4.16
2014 4613 1.142314 GGCTAATCGTGCGGTGGTA 59.858 57.895 0.00 0.00 0.00 3.25
2015 4614 0.249741 GGCTAATCGTGCGGTGGTAT 60.250 55.000 0.00 0.00 0.00 2.73
2016 4615 1.578583 GCTAATCGTGCGGTGGTATT 58.421 50.000 0.00 0.00 0.00 1.89
2017 4616 1.260561 GCTAATCGTGCGGTGGTATTG 59.739 52.381 0.00 0.00 0.00 1.90
2018 4617 1.864711 CTAATCGTGCGGTGGTATTGG 59.135 52.381 0.00 0.00 0.00 3.16
2019 4618 0.250793 AATCGTGCGGTGGTATTGGA 59.749 50.000 0.00 0.00 0.00 3.53
2020 4619 0.468226 ATCGTGCGGTGGTATTGGAT 59.532 50.000 0.00 0.00 0.00 3.41
2021 4620 0.179094 TCGTGCGGTGGTATTGGATC 60.179 55.000 0.00 0.00 0.00 3.36
2022 4621 0.179084 CGTGCGGTGGTATTGGATCT 60.179 55.000 0.00 0.00 0.00 2.75
2023 4622 1.299541 GTGCGGTGGTATTGGATCTG 58.700 55.000 0.00 0.00 0.00 2.90
2024 4623 0.908910 TGCGGTGGTATTGGATCTGT 59.091 50.000 0.00 0.00 0.00 3.41
2025 4624 1.299541 GCGGTGGTATTGGATCTGTG 58.700 55.000 0.00 0.00 0.00 3.66
2026 4625 1.406887 GCGGTGGTATTGGATCTGTGT 60.407 52.381 0.00 0.00 0.00 3.72
2027 4626 2.159014 GCGGTGGTATTGGATCTGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
2028 4627 3.454375 CGGTGGTATTGGATCTGTGTAC 58.546 50.000 0.00 0.00 0.00 2.90
2029 4628 3.454375 GGTGGTATTGGATCTGTGTACG 58.546 50.000 0.00 0.00 0.00 3.67
2030 4629 2.864343 GTGGTATTGGATCTGTGTACGC 59.136 50.000 0.00 0.00 0.00 4.42
2031 4630 2.764010 TGGTATTGGATCTGTGTACGCT 59.236 45.455 8.10 0.00 0.00 5.07
2032 4631 3.196901 TGGTATTGGATCTGTGTACGCTT 59.803 43.478 8.10 0.00 0.00 4.68
2033 4632 4.189231 GGTATTGGATCTGTGTACGCTTT 58.811 43.478 8.10 0.00 0.00 3.51
2034 4633 4.034048 GGTATTGGATCTGTGTACGCTTTG 59.966 45.833 8.10 0.00 0.00 2.77
2035 4634 2.831685 TGGATCTGTGTACGCTTTGT 57.168 45.000 8.10 0.00 0.00 2.83
2036 4635 2.412870 TGGATCTGTGTACGCTTTGTG 58.587 47.619 8.10 0.00 0.00 3.33
2037 4636 1.732259 GGATCTGTGTACGCTTTGTGG 59.268 52.381 8.10 0.00 0.00 4.17
2038 4637 1.732259 GATCTGTGTACGCTTTGTGGG 59.268 52.381 8.10 0.00 0.00 4.61
2039 4638 0.250124 TCTGTGTACGCTTTGTGGGG 60.250 55.000 8.10 0.00 0.00 4.96
2040 4639 0.534203 CTGTGTACGCTTTGTGGGGT 60.534 55.000 8.10 0.00 36.39 4.95
2041 4640 0.816018 TGTGTACGCTTTGTGGGGTG 60.816 55.000 8.10 0.00 34.32 4.61
2042 4641 0.816421 GTGTACGCTTTGTGGGGTGT 60.816 55.000 0.00 0.00 34.32 4.16
2043 4642 0.816018 TGTACGCTTTGTGGGGTGTG 60.816 55.000 0.00 0.00 34.32 3.82
2044 4643 0.816421 GTACGCTTTGTGGGGTGTGT 60.816 55.000 0.00 0.00 34.32 3.72
2045 4644 0.107116 TACGCTTTGTGGGGTGTGTT 60.107 50.000 0.00 0.00 34.32 3.32
2046 4645 0.968393 ACGCTTTGTGGGGTGTGTTT 60.968 50.000 0.00 0.00 0.00 2.83
2047 4646 1.025812 CGCTTTGTGGGGTGTGTTTA 58.974 50.000 0.00 0.00 0.00 2.01
2048 4647 1.405821 CGCTTTGTGGGGTGTGTTTAA 59.594 47.619 0.00 0.00 0.00 1.52
2049 4648 2.159226 CGCTTTGTGGGGTGTGTTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
2050 4649 3.453424 GCTTTGTGGGGTGTGTTTAAAG 58.547 45.455 0.00 0.00 0.00 1.85
2051 4650 3.131400 GCTTTGTGGGGTGTGTTTAAAGA 59.869 43.478 0.00 0.00 0.00 2.52
2052 4651 4.382147 GCTTTGTGGGGTGTGTTTAAAGAA 60.382 41.667 0.00 0.00 0.00 2.52
2053 4652 4.993029 TTGTGGGGTGTGTTTAAAGAAG 57.007 40.909 0.00 0.00 0.00 2.85
2054 4653 3.970842 TGTGGGGTGTGTTTAAAGAAGT 58.029 40.909 0.00 0.00 0.00 3.01
2055 4654 4.345854 TGTGGGGTGTGTTTAAAGAAGTT 58.654 39.130 0.00 0.00 0.00 2.66
2056 4655 4.399934 TGTGGGGTGTGTTTAAAGAAGTTC 59.600 41.667 0.00 0.00 0.00 3.01
2057 4656 4.643334 GTGGGGTGTGTTTAAAGAAGTTCT 59.357 41.667 0.00 0.00 0.00 3.01
2058 4657 5.126545 GTGGGGTGTGTTTAAAGAAGTTCTT 59.873 40.000 12.50 12.50 38.59 2.52
2059 4658 5.126384 TGGGGTGTGTTTAAAGAAGTTCTTG 59.874 40.000 18.70 0.00 36.71 3.02
2060 4659 5.126545 GGGGTGTGTTTAAAGAAGTTCTTGT 59.873 40.000 18.70 11.18 36.71 3.16
2061 4660 6.350696 GGGGTGTGTTTAAAGAAGTTCTTGTT 60.351 38.462 18.70 6.95 36.71 2.83
2062 4661 7.094631 GGGTGTGTTTAAAGAAGTTCTTGTTT 58.905 34.615 18.70 6.23 36.71 2.83
2063 4662 7.062956 GGGTGTGTTTAAAGAAGTTCTTGTTTG 59.937 37.037 18.70 0.00 36.71 2.93
2064 4663 7.810759 GGTGTGTTTAAAGAAGTTCTTGTTTGA 59.189 33.333 18.70 6.71 36.71 2.69
2065 4664 9.353999 GTGTGTTTAAAGAAGTTCTTGTTTGAT 57.646 29.630 18.70 4.81 36.71 2.57
2066 4665 9.921637 TGTGTTTAAAGAAGTTCTTGTTTGATT 57.078 25.926 18.70 4.10 36.71 2.57
2068 4667 9.921637 TGTTTAAAGAAGTTCTTGTTTGATTGT 57.078 25.926 18.70 2.69 36.71 2.71
2182 4781 0.252197 GTGTATGACAGTGGGACCCC 59.748 60.000 8.45 2.69 0.00 4.95
2183 4782 1.261938 TGTATGACAGTGGGACCCCG 61.262 60.000 8.45 0.00 39.42 5.73
2318 4917 7.655328 AGTGGTACTACACGTCATCTACTATAC 59.345 40.741 12.29 0.00 45.80 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.572828 TTTCGCTATTTTGGCACATATATTTG 57.427 30.769 0.00 0.00 39.30 2.32
893 895 2.824689 TCATGGGGCTTCAAGCAATA 57.175 45.000 12.53 0.00 44.75 1.90
975 2467 2.476619 CGTTGACTTCAGCTTCGTTCAT 59.523 45.455 0.00 0.00 0.00 2.57
976 2468 1.858458 CGTTGACTTCAGCTTCGTTCA 59.142 47.619 0.00 0.00 0.00 3.18
1030 2522 1.211969 CGACGACTCCATCCACGTT 59.788 57.895 0.00 0.00 39.04 3.99
1105 2597 1.003718 CTTCCTCCGGGAACACACC 60.004 63.158 0.00 0.00 45.72 4.16
1146 2638 1.134551 TCATGCACGCTAGCCACAATA 60.135 47.619 9.66 0.00 0.00 1.90
1147 2639 0.392863 TCATGCACGCTAGCCACAAT 60.393 50.000 9.66 0.00 0.00 2.71
1148 2640 0.392863 ATCATGCACGCTAGCCACAA 60.393 50.000 9.66 0.00 0.00 3.33
1149 2641 1.091197 CATCATGCACGCTAGCCACA 61.091 55.000 9.66 5.24 0.00 4.17
1150 2642 1.091771 ACATCATGCACGCTAGCCAC 61.092 55.000 9.66 0.00 0.00 5.01
1151 2643 0.811219 GACATCATGCACGCTAGCCA 60.811 55.000 9.66 1.33 0.00 4.75
1152 2644 1.825285 CGACATCATGCACGCTAGCC 61.825 60.000 9.66 0.00 0.00 3.93
1153 2645 1.561730 CGACATCATGCACGCTAGC 59.438 57.895 4.06 4.06 0.00 3.42
1154 2646 1.825285 GCCGACATCATGCACGCTAG 61.825 60.000 0.00 0.00 0.00 3.42
1155 2647 1.882625 GCCGACATCATGCACGCTA 60.883 57.895 0.00 0.00 0.00 4.26
1156 2648 3.197790 GCCGACATCATGCACGCT 61.198 61.111 0.00 0.00 0.00 5.07
1157 2649 3.444717 CTGCCGACATCATGCACGC 62.445 63.158 0.00 0.00 0.00 5.34
1158 2650 2.705220 CTGCCGACATCATGCACG 59.295 61.111 0.00 0.00 0.00 5.34
1159 2651 3.104766 CCTGCCGACATCATGCAC 58.895 61.111 0.00 0.00 0.00 4.57
1160 2652 2.825387 GCCTGCCGACATCATGCA 60.825 61.111 0.00 0.00 0.00 3.96
1161 2653 3.945434 CGCCTGCCGACATCATGC 61.945 66.667 0.00 0.00 40.02 4.06
1162 2654 3.274586 CCGCCTGCCGACATCATG 61.275 66.667 0.00 0.00 40.02 3.07
1177 2669 3.255379 GAAGCTAACCGCGAGCCG 61.255 66.667 8.23 0.00 45.59 5.52
1178 2670 2.012902 TAGGAAGCTAACCGCGAGCC 62.013 60.000 8.23 0.00 45.59 4.70
1179 2671 0.179119 TTAGGAAGCTAACCGCGAGC 60.179 55.000 8.23 9.35 45.59 5.03
1180 2672 2.510768 ATTAGGAAGCTAACCGCGAG 57.489 50.000 8.23 0.00 45.59 5.03
1181 2673 2.954318 AGTATTAGGAAGCTAACCGCGA 59.046 45.455 8.23 0.00 45.59 5.87
1182 2674 3.306818 GAGTATTAGGAAGCTAACCGCG 58.693 50.000 0.00 0.00 45.59 6.46
1183 2675 3.554544 GGGAGTATTAGGAAGCTAACCGC 60.555 52.174 0.00 0.00 39.57 5.68
1184 2676 3.896272 AGGGAGTATTAGGAAGCTAACCG 59.104 47.826 0.00 0.00 0.00 4.44
1185 2677 5.509332 CGAAGGGAGTATTAGGAAGCTAACC 60.509 48.000 2.08 2.08 0.00 2.85
1186 2678 5.068855 ACGAAGGGAGTATTAGGAAGCTAAC 59.931 44.000 0.00 0.00 0.00 2.34
1187 2679 5.206587 ACGAAGGGAGTATTAGGAAGCTAA 58.793 41.667 0.00 0.00 0.00 3.09
1188 2680 4.801164 ACGAAGGGAGTATTAGGAAGCTA 58.199 43.478 0.00 0.00 0.00 3.32
1189 2681 3.637694 GACGAAGGGAGTATTAGGAAGCT 59.362 47.826 0.00 0.00 0.00 3.74
1190 2682 3.243805 GGACGAAGGGAGTATTAGGAAGC 60.244 52.174 0.00 0.00 0.00 3.86
1191 2683 3.321396 GGGACGAAGGGAGTATTAGGAAG 59.679 52.174 0.00 0.00 0.00 3.46
1192 2684 3.303049 GGGACGAAGGGAGTATTAGGAA 58.697 50.000 0.00 0.00 0.00 3.36
1193 2685 2.245546 TGGGACGAAGGGAGTATTAGGA 59.754 50.000 0.00 0.00 0.00 2.94
1194 2686 2.674420 TGGGACGAAGGGAGTATTAGG 58.326 52.381 0.00 0.00 0.00 2.69
1195 2687 4.748277 TTTGGGACGAAGGGAGTATTAG 57.252 45.455 0.00 0.00 0.00 1.73
1196 2688 5.703730 ATTTTGGGACGAAGGGAGTATTA 57.296 39.130 0.00 0.00 0.00 0.98
1197 2689 4.586306 ATTTTGGGACGAAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
1198 2690 4.227527 AGAATTTTGGGACGAAGGGAGTAT 59.772 41.667 0.00 0.00 0.00 2.12
1199 2691 3.585732 AGAATTTTGGGACGAAGGGAGTA 59.414 43.478 0.00 0.00 0.00 2.59
1200 2692 2.375509 AGAATTTTGGGACGAAGGGAGT 59.624 45.455 0.00 0.00 0.00 3.85
1201 2693 3.073274 AGAATTTTGGGACGAAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
1202 2694 3.153919 CAAGAATTTTGGGACGAAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
1203 2695 2.890945 ACAAGAATTTTGGGACGAAGGG 59.109 45.455 0.00 0.00 0.00 3.95
1204 2696 3.821033 AGACAAGAATTTTGGGACGAAGG 59.179 43.478 0.00 0.00 0.00 3.46
1205 2697 5.438761 AAGACAAGAATTTTGGGACGAAG 57.561 39.130 0.00 0.00 0.00 3.79
1206 2698 6.292923 TCTAAGACAAGAATTTTGGGACGAA 58.707 36.000 0.00 0.00 0.00 3.85
1207 2699 5.860611 TCTAAGACAAGAATTTTGGGACGA 58.139 37.500 0.00 0.00 0.00 4.20
1208 2700 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1209 2701 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1210 2702 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1211 2703 9.546428 AAACAAATCTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.04 4.12
1219 2711 9.582431 CCGTATCTAAACAAATCTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
1220 2712 9.582431 TCCGTATCTAAACAAATCTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
1222 2714 9.529325 CATCCGTATCTAAACAAATCTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
1223 2715 9.530633 ACATCCGTATCTAAACAAATCTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
1240 2732 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
1241 2733 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
1242 2734 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
1243 2735 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
1244 2736 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
1287 2779 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1288 2780 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1289 2781 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1290 2782 8.359642 TGTCCCAAAATTCTTGTCTTAGATTTG 58.640 33.333 0.00 0.00 29.84 2.32
1291 2783 8.477419 TGTCCCAAAATTCTTGTCTTAGATTT 57.523 30.769 0.00 0.00 0.00 2.17
1292 2784 7.944554 TCTGTCCCAAAATTCTTGTCTTAGATT 59.055 33.333 0.00 0.00 0.00 2.40
1293 2785 7.461749 TCTGTCCCAAAATTCTTGTCTTAGAT 58.538 34.615 0.00 0.00 0.00 1.98
1294 2786 6.837312 TCTGTCCCAAAATTCTTGTCTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
1295 2787 6.150140 CCTCTGTCCCAAAATTCTTGTCTTAG 59.850 42.308 0.00 0.00 0.00 2.18
1296 2788 6.003950 CCTCTGTCCCAAAATTCTTGTCTTA 58.996 40.000 0.00 0.00 0.00 2.10
1297 2789 4.829492 CCTCTGTCCCAAAATTCTTGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
1298 2790 4.401925 CCTCTGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
1299 2791 3.507622 CCCTCTGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
1300 2792 3.140144 TCCCTCTGTCCCAAAATTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
1301 2793 3.760684 CTCCCTCTGTCCCAAAATTCTTG 59.239 47.826 0.00 0.00 0.00 3.02
1302 2794 3.399305 ACTCCCTCTGTCCCAAAATTCTT 59.601 43.478 0.00 0.00 0.00 2.52
1303 2795 2.989571 ACTCCCTCTGTCCCAAAATTCT 59.010 45.455 0.00 0.00 0.00 2.40
1304 2796 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
1305 2797 4.175962 TCTACTCCCTCTGTCCCAAAATT 58.824 43.478 0.00 0.00 0.00 1.82
1306 2798 3.803340 TCTACTCCCTCTGTCCCAAAAT 58.197 45.455 0.00 0.00 0.00 1.82
1307 2799 3.269592 TCTACTCCCTCTGTCCCAAAA 57.730 47.619 0.00 0.00 0.00 2.44
1308 2800 3.269592 TTCTACTCCCTCTGTCCCAAA 57.730 47.619 0.00 0.00 0.00 3.28
1309 2801 3.107601 CATTCTACTCCCTCTGTCCCAA 58.892 50.000 0.00 0.00 0.00 4.12
1310 2802 2.626950 CCATTCTACTCCCTCTGTCCCA 60.627 54.545 0.00 0.00 0.00 4.37
1311 2803 2.043227 CCATTCTACTCCCTCTGTCCC 58.957 57.143 0.00 0.00 0.00 4.46
1312 2804 3.033659 TCCATTCTACTCCCTCTGTCC 57.966 52.381 0.00 0.00 0.00 4.02
1313 2805 3.244044 GCATCCATTCTACTCCCTCTGTC 60.244 52.174 0.00 0.00 0.00 3.51
1314 2806 2.703007 GCATCCATTCTACTCCCTCTGT 59.297 50.000 0.00 0.00 0.00 3.41
1315 2807 2.288702 CGCATCCATTCTACTCCCTCTG 60.289 54.545 0.00 0.00 0.00 3.35
1316 2808 1.967066 CGCATCCATTCTACTCCCTCT 59.033 52.381 0.00 0.00 0.00 3.69
1317 2809 1.689273 ACGCATCCATTCTACTCCCTC 59.311 52.381 0.00 0.00 0.00 4.30
1318 2810 1.689273 GACGCATCCATTCTACTCCCT 59.311 52.381 0.00 0.00 0.00 4.20
1319 2811 1.270358 GGACGCATCCATTCTACTCCC 60.270 57.143 0.00 0.00 45.47 4.30
1320 2812 1.603172 CGGACGCATCCATTCTACTCC 60.603 57.143 0.00 0.00 46.67 3.85
1321 2813 1.337071 TCGGACGCATCCATTCTACTC 59.663 52.381 0.00 0.00 46.67 2.59
1322 2814 1.338337 CTCGGACGCATCCATTCTACT 59.662 52.381 0.00 0.00 46.67 2.57
1323 2815 1.337071 TCTCGGACGCATCCATTCTAC 59.663 52.381 0.00 0.00 46.67 2.59
1327 2819 2.365617 ACTTATCTCGGACGCATCCATT 59.634 45.455 0.00 0.00 46.67 3.16
1335 2827 8.700644 CATCCTATTAAAAACTTATCTCGGACG 58.299 37.037 0.00 0.00 0.00 4.79
1338 2830 9.726438 ATCCATCCTATTAAAAACTTATCTCGG 57.274 33.333 0.00 0.00 0.00 4.63
1465 4063 6.403200 CCACCGTGTAGGAAAATATGAAACTG 60.403 42.308 0.00 0.00 45.00 3.16
1546 4144 7.280205 CCACTAAAATCAATCTAACGGTTAGCT 59.720 37.037 20.49 10.35 33.23 3.32
1547 4145 7.407337 CCACTAAAATCAATCTAACGGTTAGC 58.593 38.462 20.49 0.00 33.23 3.09
1548 4146 7.466860 GCCCACTAAAATCAATCTAACGGTTAG 60.467 40.741 19.49 19.49 34.52 2.34
1549 4147 6.316890 GCCCACTAAAATCAATCTAACGGTTA 59.683 38.462 0.00 0.00 0.00 2.85
1550 4148 5.124936 GCCCACTAAAATCAATCTAACGGTT 59.875 40.000 0.00 0.00 0.00 4.44
1551 4149 4.638865 GCCCACTAAAATCAATCTAACGGT 59.361 41.667 0.00 0.00 0.00 4.83
1552 4150 4.036380 GGCCCACTAAAATCAATCTAACGG 59.964 45.833 0.00 0.00 0.00 4.44
1553 4151 4.881850 AGGCCCACTAAAATCAATCTAACG 59.118 41.667 0.00 0.00 0.00 3.18
1554 4152 7.875327 TTAGGCCCACTAAAATCAATCTAAC 57.125 36.000 0.00 0.00 38.68 2.34
1555 4153 7.444183 CGATTAGGCCCACTAAAATCAATCTAA 59.556 37.037 0.00 0.00 44.39 2.10
1556 4154 6.934645 CGATTAGGCCCACTAAAATCAATCTA 59.065 38.462 0.00 0.00 44.39 1.98
1557 4155 5.765182 CGATTAGGCCCACTAAAATCAATCT 59.235 40.000 0.00 0.00 44.39 2.40
1558 4156 5.531287 ACGATTAGGCCCACTAAAATCAATC 59.469 40.000 0.00 0.00 44.39 2.67
1559 4157 5.299279 CACGATTAGGCCCACTAAAATCAAT 59.701 40.000 0.00 0.00 44.39 2.57
1560 4158 4.638421 CACGATTAGGCCCACTAAAATCAA 59.362 41.667 0.00 0.00 44.39 2.57
1561 4159 4.196193 CACGATTAGGCCCACTAAAATCA 58.804 43.478 0.00 0.00 44.39 2.57
1562 4160 3.003378 GCACGATTAGGCCCACTAAAATC 59.997 47.826 0.00 0.00 44.39 2.17
1563 4161 2.949644 GCACGATTAGGCCCACTAAAAT 59.050 45.455 0.00 0.00 44.39 1.82
1564 4162 2.361789 GCACGATTAGGCCCACTAAAA 58.638 47.619 0.00 0.00 44.39 1.52
1565 4163 1.741055 CGCACGATTAGGCCCACTAAA 60.741 52.381 0.00 0.00 44.39 1.85
1566 4164 0.179094 CGCACGATTAGGCCCACTAA 60.179 55.000 0.00 0.00 45.24 2.24
1567 4165 1.440060 CGCACGATTAGGCCCACTA 59.560 57.895 0.00 0.00 0.00 2.74
1568 4166 2.186903 CGCACGATTAGGCCCACT 59.813 61.111 0.00 0.00 0.00 4.00
1569 4167 2.895372 CCGCACGATTAGGCCCAC 60.895 66.667 0.00 0.00 0.00 4.61
1570 4168 3.395702 ACCGCACGATTAGGCCCA 61.396 61.111 0.00 0.00 0.00 5.36
1571 4169 2.895372 CACCGCACGATTAGGCCC 60.895 66.667 0.00 0.00 0.00 5.80
1572 4170 2.300850 TACCACCGCACGATTAGGCC 62.301 60.000 0.00 0.00 0.00 5.19
1573 4171 0.460635 TTACCACCGCACGATTAGGC 60.461 55.000 0.00 0.00 0.00 3.93
1574 4172 1.864711 CATTACCACCGCACGATTAGG 59.135 52.381 0.00 0.00 0.00 2.69
1575 4173 1.864711 CCATTACCACCGCACGATTAG 59.135 52.381 0.00 0.00 0.00 1.73
1576 4174 1.481363 TCCATTACCACCGCACGATTA 59.519 47.619 0.00 0.00 0.00 1.75
1577 4175 0.250793 TCCATTACCACCGCACGATT 59.749 50.000 0.00 0.00 0.00 3.34
1578 4176 0.468226 ATCCATTACCACCGCACGAT 59.532 50.000 0.00 0.00 0.00 3.73
1579 4177 0.179094 GATCCATTACCACCGCACGA 60.179 55.000 0.00 0.00 0.00 4.35
1580 4178 0.179084 AGATCCATTACCACCGCACG 60.179 55.000 0.00 0.00 0.00 5.34
1581 4179 1.299541 CAGATCCATTACCACCGCAC 58.700 55.000 0.00 0.00 0.00 5.34
1582 4180 0.908910 ACAGATCCATTACCACCGCA 59.091 50.000 0.00 0.00 0.00 5.69
1583 4181 1.299541 CACAGATCCATTACCACCGC 58.700 55.000 0.00 0.00 0.00 5.68
1584 4182 2.691409 ACACAGATCCATTACCACCG 57.309 50.000 0.00 0.00 0.00 4.94
1585 4183 3.454375 CGTACACAGATCCATTACCACC 58.546 50.000 0.00 0.00 0.00 4.61
1586 4184 2.864343 GCGTACACAGATCCATTACCAC 59.136 50.000 0.00 0.00 0.00 4.16
1587 4185 2.764010 AGCGTACACAGATCCATTACCA 59.236 45.455 0.00 0.00 0.00 3.25
1588 4186 3.454371 AGCGTACACAGATCCATTACC 57.546 47.619 0.00 0.00 0.00 2.85
1589 4187 4.630069 ACAAAGCGTACACAGATCCATTAC 59.370 41.667 0.00 0.00 0.00 1.89
1590 4188 4.629634 CACAAAGCGTACACAGATCCATTA 59.370 41.667 0.00 0.00 0.00 1.90
1591 4189 3.436704 CACAAAGCGTACACAGATCCATT 59.563 43.478 0.00 0.00 0.00 3.16
1592 4190 3.002791 CACAAAGCGTACACAGATCCAT 58.997 45.455 0.00 0.00 0.00 3.41
1593 4191 2.412870 CACAAAGCGTACACAGATCCA 58.587 47.619 0.00 0.00 0.00 3.41
1594 4192 1.732259 CCACAAAGCGTACACAGATCC 59.268 52.381 0.00 0.00 0.00 3.36
1595 4193 1.732259 CCCACAAAGCGTACACAGATC 59.268 52.381 0.00 0.00 0.00 2.75
1596 4194 1.346395 TCCCACAAAGCGTACACAGAT 59.654 47.619 0.00 0.00 0.00 2.90
1597 4195 0.753867 TCCCACAAAGCGTACACAGA 59.246 50.000 0.00 0.00 0.00 3.41
1598 4196 1.464608 CATCCCACAAAGCGTACACAG 59.535 52.381 0.00 0.00 0.00 3.66
1599 4197 1.202710 ACATCCCACAAAGCGTACACA 60.203 47.619 0.00 0.00 0.00 3.72
1600 4198 1.196808 CACATCCCACAAAGCGTACAC 59.803 52.381 0.00 0.00 0.00 2.90
1601 4199 1.518325 CACATCCCACAAAGCGTACA 58.482 50.000 0.00 0.00 0.00 2.90
1602 4200 0.168128 GCACATCCCACAAAGCGTAC 59.832 55.000 0.00 0.00 0.00 3.67
1603 4201 0.036164 AGCACATCCCACAAAGCGTA 59.964 50.000 0.00 0.00 0.00 4.42
1604 4202 0.823356 AAGCACATCCCACAAAGCGT 60.823 50.000 0.00 0.00 0.00 5.07
1605 4203 1.131126 CTAAGCACATCCCACAAAGCG 59.869 52.381 0.00 0.00 0.00 4.68
1606 4204 1.474077 CCTAAGCACATCCCACAAAGC 59.526 52.381 0.00 0.00 0.00 3.51
1607 4205 2.795329 ACCTAAGCACATCCCACAAAG 58.205 47.619 0.00 0.00 0.00 2.77
1608 4206 2.969821 ACCTAAGCACATCCCACAAA 57.030 45.000 0.00 0.00 0.00 2.83
1609 4207 2.969821 AACCTAAGCACATCCCACAA 57.030 45.000 0.00 0.00 0.00 3.33
1610 4208 2.969821 AAACCTAAGCACATCCCACA 57.030 45.000 0.00 0.00 0.00 4.17
1611 4209 3.279434 CCTAAACCTAAGCACATCCCAC 58.721 50.000 0.00 0.00 0.00 4.61
1612 4210 2.241176 CCCTAAACCTAAGCACATCCCA 59.759 50.000 0.00 0.00 0.00 4.37
1613 4211 2.241430 ACCCTAAACCTAAGCACATCCC 59.759 50.000 0.00 0.00 0.00 3.85
1614 4212 3.646736 ACCCTAAACCTAAGCACATCC 57.353 47.619 0.00 0.00 0.00 3.51
1615 4213 6.095021 CCTTAAACCCTAAACCTAAGCACATC 59.905 42.308 0.00 0.00 0.00 3.06
1616 4214 5.949952 CCTTAAACCCTAAACCTAAGCACAT 59.050 40.000 0.00 0.00 0.00 3.21
1617 4215 5.163066 ACCTTAAACCCTAAACCTAAGCACA 60.163 40.000 0.00 0.00 0.00 4.57
1618 4216 5.319453 ACCTTAAACCCTAAACCTAAGCAC 58.681 41.667 0.00 0.00 0.00 4.40
1619 4217 5.587760 ACCTTAAACCCTAAACCTAAGCA 57.412 39.130 0.00 0.00 0.00 3.91
1620 4218 6.906157 AAACCTTAAACCCTAAACCTAAGC 57.094 37.500 0.00 0.00 0.00 3.09
1621 4219 7.613022 CCCTAAACCTTAAACCCTAAACCTAAG 59.387 40.741 0.00 0.00 0.00 2.18
1622 4220 7.074880 ACCCTAAACCTTAAACCCTAAACCTAA 59.925 37.037 0.00 0.00 0.00 2.69
1623 4221 6.566091 ACCCTAAACCTTAAACCCTAAACCTA 59.434 38.462 0.00 0.00 0.00 3.08
1624 4222 5.376559 ACCCTAAACCTTAAACCCTAAACCT 59.623 40.000 0.00 0.00 0.00 3.50
1625 4223 5.644188 ACCCTAAACCTTAAACCCTAAACC 58.356 41.667 0.00 0.00 0.00 3.27
1626 4224 7.601705 AAACCCTAAACCTTAAACCCTAAAC 57.398 36.000 0.00 0.00 0.00 2.01
1627 4225 7.949565 CCTAAACCCTAAACCTTAAACCCTAAA 59.050 37.037 0.00 0.00 0.00 1.85
1628 4226 7.074880 ACCTAAACCCTAAACCTTAAACCCTAA 59.925 37.037 0.00 0.00 0.00 2.69
1629 4227 6.566091 ACCTAAACCCTAAACCTTAAACCCTA 59.434 38.462 0.00 0.00 0.00 3.53
1630 4228 5.376559 ACCTAAACCCTAAACCTTAAACCCT 59.623 40.000 0.00 0.00 0.00 4.34
1631 4229 5.644188 ACCTAAACCCTAAACCTTAAACCC 58.356 41.667 0.00 0.00 0.00 4.11
1632 4230 8.704849 TTAACCTAAACCCTAAACCTTAAACC 57.295 34.615 0.00 0.00 0.00 3.27
1633 4231 8.796475 CCTTAACCTAAACCCTAAACCTTAAAC 58.204 37.037 0.00 0.00 0.00 2.01
1634 4232 7.451255 GCCTTAACCTAAACCCTAAACCTTAAA 59.549 37.037 0.00 0.00 0.00 1.52
1635 4233 6.947733 GCCTTAACCTAAACCCTAAACCTTAA 59.052 38.462 0.00 0.00 0.00 1.85
1636 4234 6.275381 AGCCTTAACCTAAACCCTAAACCTTA 59.725 38.462 0.00 0.00 0.00 2.69
1637 4235 5.075483 AGCCTTAACCTAAACCCTAAACCTT 59.925 40.000 0.00 0.00 0.00 3.50
1638 4236 4.604930 AGCCTTAACCTAAACCCTAAACCT 59.395 41.667 0.00 0.00 0.00 3.50
1639 4237 4.927049 AGCCTTAACCTAAACCCTAAACC 58.073 43.478 0.00 0.00 0.00 3.27
1640 4238 7.383102 GTTAGCCTTAACCTAAACCCTAAAC 57.617 40.000 0.00 0.00 34.37 2.01
1653 4251 7.549615 AATCAATCTAACGGTTAGCCTTAAC 57.450 36.000 20.49 0.00 38.74 2.01
1654 4252 8.570068 AAAATCAATCTAACGGTTAGCCTTAA 57.430 30.769 20.49 5.96 33.23 1.85
1655 4253 9.321562 CTAAAATCAATCTAACGGTTAGCCTTA 57.678 33.333 20.49 6.30 33.23 2.69
1656 4254 7.827729 ACTAAAATCAATCTAACGGTTAGCCTT 59.172 33.333 20.49 13.97 33.23 4.35
1657 4255 7.280205 CACTAAAATCAATCTAACGGTTAGCCT 59.720 37.037 20.49 9.37 33.23 4.58
1704 4302 3.002791 CACAAAGCGTACACAGATCCAT 58.997 45.455 0.00 0.00 0.00 3.41
1780 4379 9.225436 GGAAACTAATCTCAGATAAATCCATCC 57.775 37.037 0.00 0.00 0.00 3.51
1805 4404 4.529769 TCAGAGTGCATCCATCCTATTAGG 59.470 45.833 3.07 3.07 36.46 2.69
1806 4405 5.735285 TCAGAGTGCATCCATCCTATTAG 57.265 43.478 0.00 0.00 0.00 1.73
1807 4406 6.692849 AATCAGAGTGCATCCATCCTATTA 57.307 37.500 0.00 0.00 0.00 0.98
1808 4407 5.579753 AATCAGAGTGCATCCATCCTATT 57.420 39.130 0.00 0.00 0.00 1.73
1809 4408 5.579753 AAATCAGAGTGCATCCATCCTAT 57.420 39.130 0.00 0.00 0.00 2.57
1810 4409 5.604231 ACTAAATCAGAGTGCATCCATCCTA 59.396 40.000 0.00 0.00 0.00 2.94
1811 4410 3.947612 AAATCAGAGTGCATCCATCCT 57.052 42.857 0.00 0.00 0.00 3.24
1812 4411 4.712476 ACTAAATCAGAGTGCATCCATCC 58.288 43.478 0.00 0.00 0.00 3.51
1813 4412 6.238593 GGAAACTAAATCAGAGTGCATCCATC 60.239 42.308 0.00 0.00 30.76 3.51
1814 4413 5.591877 GGAAACTAAATCAGAGTGCATCCAT 59.408 40.000 0.00 0.00 30.76 3.41
1815 4414 4.943705 GGAAACTAAATCAGAGTGCATCCA 59.056 41.667 0.00 0.00 30.76 3.41
1816 4415 5.189180 AGGAAACTAAATCAGAGTGCATCC 58.811 41.667 0.00 0.00 40.61 3.51
1838 4437 3.804036 TCACGGGTGCATCCTATTTTAG 58.196 45.455 15.59 0.00 36.25 1.85
1839 4438 3.916359 TCACGGGTGCATCCTATTTTA 57.084 42.857 15.59 0.00 36.25 1.52
1840 4439 2.799126 TCACGGGTGCATCCTATTTT 57.201 45.000 15.59 0.00 36.25 1.82
1841 4440 3.297134 AATCACGGGTGCATCCTATTT 57.703 42.857 15.59 0.00 36.25 1.40
1842 4441 4.640771 ATAATCACGGGTGCATCCTATT 57.359 40.909 15.59 13.04 36.25 1.73
1843 4442 4.640771 AATAATCACGGGTGCATCCTAT 57.359 40.909 15.59 1.29 36.25 2.57
1844 4443 4.591498 ACTAATAATCACGGGTGCATCCTA 59.409 41.667 15.59 0.00 36.25 2.94
1845 4444 3.391296 ACTAATAATCACGGGTGCATCCT 59.609 43.478 15.59 0.00 36.25 3.24
1846 4445 3.740115 ACTAATAATCACGGGTGCATCC 58.260 45.455 5.70 5.70 0.00 3.51
1847 4446 5.277828 GGAAACTAATAATCACGGGTGCATC 60.278 44.000 0.00 0.00 0.00 3.91
1848 4447 4.578928 GGAAACTAATAATCACGGGTGCAT 59.421 41.667 0.00 0.00 0.00 3.96
1849 4448 3.942748 GGAAACTAATAATCACGGGTGCA 59.057 43.478 0.00 0.00 0.00 4.57
1850 4449 4.196971 AGGAAACTAATAATCACGGGTGC 58.803 43.478 0.00 0.00 40.61 5.01
1864 4463 6.070251 TCCATGACTGAGCAATTAGGAAACTA 60.070 38.462 0.00 0.00 43.67 2.24
1865 4464 9.380119 ACTCCATGACTGAGCAATTAGGAAACT 62.380 40.741 0.00 0.00 37.68 2.66
1866 4465 4.943705 TCCATGACTGAGCAATTAGGAAAC 59.056 41.667 0.00 0.00 0.00 2.78
1867 4466 5.178096 TCCATGACTGAGCAATTAGGAAA 57.822 39.130 0.00 0.00 0.00 3.13
1868 4467 4.225942 ACTCCATGACTGAGCAATTAGGAA 59.774 41.667 0.00 0.00 32.98 3.36
1869 4468 3.776969 ACTCCATGACTGAGCAATTAGGA 59.223 43.478 0.00 0.00 32.98 2.94
1870 4469 4.148128 ACTCCATGACTGAGCAATTAGG 57.852 45.455 0.00 0.00 32.98 2.69
1871 4470 5.645067 TGAAACTCCATGACTGAGCAATTAG 59.355 40.000 0.00 0.00 32.98 1.73
1872 4471 5.559770 TGAAACTCCATGACTGAGCAATTA 58.440 37.500 0.00 0.00 32.98 1.40
1873 4472 4.401022 TGAAACTCCATGACTGAGCAATT 58.599 39.130 0.00 0.00 32.98 2.32
1874 4473 4.025040 TGAAACTCCATGACTGAGCAAT 57.975 40.909 0.00 0.00 32.98 3.56
1875 4474 3.490439 TGAAACTCCATGACTGAGCAA 57.510 42.857 0.00 0.00 32.98 3.91
1876 4475 3.708403 ATGAAACTCCATGACTGAGCA 57.292 42.857 0.00 0.00 32.98 4.26
1877 4476 6.690194 AAATATGAAACTCCATGACTGAGC 57.310 37.500 0.00 0.00 32.98 4.26
1878 4477 7.555554 AGGAAAATATGAAACTCCATGACTGAG 59.444 37.037 0.00 0.00 35.92 3.35
1879 4478 7.405292 AGGAAAATATGAAACTCCATGACTGA 58.595 34.615 0.00 0.00 0.00 3.41
1880 4479 7.201767 GGAGGAAAATATGAAACTCCATGACTG 60.202 40.741 0.00 0.00 43.02 3.51
1881 4480 6.830838 GGAGGAAAATATGAAACTCCATGACT 59.169 38.462 0.00 0.00 43.02 3.41
1882 4481 6.603201 TGGAGGAAAATATGAAACTCCATGAC 59.397 38.462 12.77 0.00 46.79 3.06
1883 4482 6.730447 TGGAGGAAAATATGAAACTCCATGA 58.270 36.000 12.77 0.00 46.79 3.07
1887 4486 4.335594 CCGTGGAGGAAAATATGAAACTCC 59.664 45.833 0.00 0.00 45.00 3.85
1888 4487 4.941873 ACCGTGGAGGAAAATATGAAACTC 59.058 41.667 0.00 0.00 45.00 3.01
1889 4488 4.700213 CACCGTGGAGGAAAATATGAAACT 59.300 41.667 0.00 0.00 45.00 2.66
1890 4489 4.142469 CCACCGTGGAGGAAAATATGAAAC 60.142 45.833 12.68 0.00 45.00 2.78
1891 4490 4.013728 CCACCGTGGAGGAAAATATGAAA 58.986 43.478 12.68 0.00 45.00 2.69
1892 4491 3.264706 TCCACCGTGGAGGAAAATATGAA 59.735 43.478 16.73 0.00 42.67 2.57
1893 4492 2.841266 TCCACCGTGGAGGAAAATATGA 59.159 45.455 16.73 0.00 42.67 2.15
1894 4493 3.275617 TCCACCGTGGAGGAAAATATG 57.724 47.619 16.73 0.00 42.67 1.78
1904 4503 1.548719 CTGATTGTACTCCACCGTGGA 59.451 52.381 19.39 19.39 45.98 4.02
1905 4504 1.275291 ACTGATTGTACTCCACCGTGG 59.725 52.381 11.73 11.73 39.43 4.94
1906 4505 2.029380 TGACTGATTGTACTCCACCGTG 60.029 50.000 0.00 0.00 0.00 4.94
1907 4506 2.244695 TGACTGATTGTACTCCACCGT 58.755 47.619 0.00 0.00 0.00 4.83
1908 4507 3.313012 TTGACTGATTGTACTCCACCG 57.687 47.619 0.00 0.00 0.00 4.94
1909 4508 4.579869 ACATTGACTGATTGTACTCCACC 58.420 43.478 0.00 0.00 0.00 4.61
1910 4509 7.667043 TTTACATTGACTGATTGTACTCCAC 57.333 36.000 0.00 0.00 0.00 4.02
1911 4510 8.729756 CAATTTACATTGACTGATTGTACTCCA 58.270 33.333 0.00 0.00 42.35 3.86
1912 4511 7.698130 GCAATTTACATTGACTGATTGTACTCC 59.302 37.037 5.78 0.00 42.35 3.85
1913 4512 8.454106 AGCAATTTACATTGACTGATTGTACTC 58.546 33.333 5.78 0.00 42.35 2.59
1914 4513 8.340618 AGCAATTTACATTGACTGATTGTACT 57.659 30.769 5.78 0.00 42.35 2.73
1917 4516 8.796475 ACTTAGCAATTTACATTGACTGATTGT 58.204 29.630 5.78 0.00 42.35 2.71
1918 4517 9.069078 CACTTAGCAATTTACATTGACTGATTG 57.931 33.333 5.78 1.46 42.35 2.67
1919 4518 7.756722 GCACTTAGCAATTTACATTGACTGATT 59.243 33.333 5.78 0.00 42.35 2.57
1920 4519 7.253422 GCACTTAGCAATTTACATTGACTGAT 58.747 34.615 5.78 0.00 42.35 2.90
1921 4520 6.611381 GCACTTAGCAATTTACATTGACTGA 58.389 36.000 5.78 0.00 42.35 3.41
1922 4521 6.859715 GCACTTAGCAATTTACATTGACTG 57.140 37.500 5.78 0.00 42.35 3.51
1957 4556 9.676861 ATCTAACGGTTAGCCTTAATTTAAACT 57.323 29.630 20.49 0.00 33.23 2.66
1960 4559 9.669887 TCAATCTAACGGTTAGCCTTAATTTAA 57.330 29.630 20.49 2.68 33.23 1.52
1961 4560 9.841295 ATCAATCTAACGGTTAGCCTTAATTTA 57.159 29.630 20.49 8.65 33.23 1.40
1962 4561 8.747538 ATCAATCTAACGGTTAGCCTTAATTT 57.252 30.769 20.49 5.23 33.23 1.82
1963 4562 8.747538 AATCAATCTAACGGTTAGCCTTAATT 57.252 30.769 20.49 12.67 33.23 1.40
1964 4563 8.747538 AAATCAATCTAACGGTTAGCCTTAAT 57.252 30.769 20.49 7.87 33.23 1.40
1965 4564 8.570068 AAAATCAATCTAACGGTTAGCCTTAA 57.430 30.769 20.49 5.96 33.23 1.85
1966 4565 9.321562 CTAAAATCAATCTAACGGTTAGCCTTA 57.678 33.333 20.49 6.30 33.23 2.69
1967 4566 7.827729 ACTAAAATCAATCTAACGGTTAGCCTT 59.172 33.333 20.49 13.97 33.23 4.35
1968 4567 7.280205 CACTAAAATCAATCTAACGGTTAGCCT 59.720 37.037 20.49 9.37 33.23 4.58
1969 4568 7.279313 TCACTAAAATCAATCTAACGGTTAGCC 59.721 37.037 20.49 0.00 33.23 3.93
1970 4569 8.193250 TCACTAAAATCAATCTAACGGTTAGC 57.807 34.615 20.49 0.00 33.23 3.09
1971 4570 8.818057 CCTCACTAAAATCAATCTAACGGTTAG 58.182 37.037 19.49 19.49 34.52 2.34
1972 4571 7.279313 GCCTCACTAAAATCAATCTAACGGTTA 59.721 37.037 0.00 0.00 0.00 2.85
1973 4572 6.093633 GCCTCACTAAAATCAATCTAACGGTT 59.906 38.462 0.00 0.00 0.00 4.44
1974 4573 5.585047 GCCTCACTAAAATCAATCTAACGGT 59.415 40.000 0.00 0.00 0.00 4.83
1975 4574 5.817816 AGCCTCACTAAAATCAATCTAACGG 59.182 40.000 0.00 0.00 0.00 4.44
1976 4575 6.910536 AGCCTCACTAAAATCAATCTAACG 57.089 37.500 0.00 0.00 0.00 3.18
1978 4577 9.261180 CGATTAGCCTCACTAAAATCAATCTAA 57.739 33.333 0.00 0.00 43.99 2.10
1979 4578 8.421784 ACGATTAGCCTCACTAAAATCAATCTA 58.578 33.333 0.00 0.00 43.99 1.98
1980 4579 7.225538 CACGATTAGCCTCACTAAAATCAATCT 59.774 37.037 0.00 0.00 43.99 2.40
1981 4580 7.348201 CACGATTAGCCTCACTAAAATCAATC 58.652 38.462 0.00 0.00 43.99 2.67
1982 4581 6.238484 GCACGATTAGCCTCACTAAAATCAAT 60.238 38.462 0.00 0.00 43.99 2.57
1983 4582 5.064707 GCACGATTAGCCTCACTAAAATCAA 59.935 40.000 0.00 0.00 43.99 2.57
1984 4583 4.570772 GCACGATTAGCCTCACTAAAATCA 59.429 41.667 0.00 0.00 43.99 2.57
1985 4584 4.318121 CGCACGATTAGCCTCACTAAAATC 60.318 45.833 0.00 0.00 43.99 2.17
1986 4585 3.555956 CGCACGATTAGCCTCACTAAAAT 59.444 43.478 0.00 0.00 43.99 1.82
1987 4586 2.927477 CGCACGATTAGCCTCACTAAAA 59.073 45.455 0.00 0.00 43.99 1.52
1988 4587 2.536365 CGCACGATTAGCCTCACTAAA 58.464 47.619 0.00 0.00 43.99 1.85
1989 4588 1.202371 CCGCACGATTAGCCTCACTAA 60.202 52.381 0.00 0.00 44.87 2.24
1990 4589 0.384309 CCGCACGATTAGCCTCACTA 59.616 55.000 0.00 0.00 0.00 2.74
1991 4590 1.141881 CCGCACGATTAGCCTCACT 59.858 57.895 0.00 0.00 0.00 3.41
1992 4591 1.153628 ACCGCACGATTAGCCTCAC 60.154 57.895 0.00 0.00 0.00 3.51
1993 4592 1.153647 CACCGCACGATTAGCCTCA 60.154 57.895 0.00 0.00 0.00 3.86
1994 4593 1.883084 CCACCGCACGATTAGCCTC 60.883 63.158 0.00 0.00 0.00 4.70
1995 4594 1.324740 TACCACCGCACGATTAGCCT 61.325 55.000 0.00 0.00 0.00 4.58
1996 4595 0.249741 ATACCACCGCACGATTAGCC 60.250 55.000 0.00 0.00 0.00 3.93
1997 4596 1.260561 CAATACCACCGCACGATTAGC 59.739 52.381 0.00 0.00 0.00 3.09
1998 4597 1.864711 CCAATACCACCGCACGATTAG 59.135 52.381 0.00 0.00 0.00 1.73
1999 4598 1.481363 TCCAATACCACCGCACGATTA 59.519 47.619 0.00 0.00 0.00 1.75
2000 4599 0.250793 TCCAATACCACCGCACGATT 59.749 50.000 0.00 0.00 0.00 3.34
2001 4600 0.468226 ATCCAATACCACCGCACGAT 59.532 50.000 0.00 0.00 0.00 3.73
2002 4601 0.179094 GATCCAATACCACCGCACGA 60.179 55.000 0.00 0.00 0.00 4.35
2003 4602 0.179084 AGATCCAATACCACCGCACG 60.179 55.000 0.00 0.00 0.00 5.34
2004 4603 1.299541 CAGATCCAATACCACCGCAC 58.700 55.000 0.00 0.00 0.00 5.34
2005 4604 0.908910 ACAGATCCAATACCACCGCA 59.091 50.000 0.00 0.00 0.00 5.69
2006 4605 1.299541 CACAGATCCAATACCACCGC 58.700 55.000 0.00 0.00 0.00 5.68
2007 4606 2.691409 ACACAGATCCAATACCACCG 57.309 50.000 0.00 0.00 0.00 4.94
2008 4607 3.454375 CGTACACAGATCCAATACCACC 58.546 50.000 0.00 0.00 0.00 4.61
2009 4608 2.864343 GCGTACACAGATCCAATACCAC 59.136 50.000 0.00 0.00 0.00 4.16
2010 4609 2.764010 AGCGTACACAGATCCAATACCA 59.236 45.455 0.00 0.00 0.00 3.25
2011 4610 3.454371 AGCGTACACAGATCCAATACC 57.546 47.619 0.00 0.00 0.00 2.73
2012 4611 4.630069 ACAAAGCGTACACAGATCCAATAC 59.370 41.667 0.00 0.00 0.00 1.89
2013 4612 4.629634 CACAAAGCGTACACAGATCCAATA 59.370 41.667 0.00 0.00 0.00 1.90
2014 4613 3.436704 CACAAAGCGTACACAGATCCAAT 59.563 43.478 0.00 0.00 0.00 3.16
2015 4614 2.805671 CACAAAGCGTACACAGATCCAA 59.194 45.455 0.00 0.00 0.00 3.53
2016 4615 2.412870 CACAAAGCGTACACAGATCCA 58.587 47.619 0.00 0.00 0.00 3.41
2017 4616 1.732259 CCACAAAGCGTACACAGATCC 59.268 52.381 0.00 0.00 0.00 3.36
2018 4617 1.732259 CCCACAAAGCGTACACAGATC 59.268 52.381 0.00 0.00 0.00 2.75
2019 4618 1.610624 CCCCACAAAGCGTACACAGAT 60.611 52.381 0.00 0.00 0.00 2.90
2020 4619 0.250124 CCCCACAAAGCGTACACAGA 60.250 55.000 0.00 0.00 0.00 3.41
2021 4620 0.534203 ACCCCACAAAGCGTACACAG 60.534 55.000 0.00 0.00 0.00 3.66
2022 4621 0.816018 CACCCCACAAAGCGTACACA 60.816 55.000 0.00 0.00 0.00 3.72
2023 4622 0.816421 ACACCCCACAAAGCGTACAC 60.816 55.000 0.00 0.00 0.00 2.90
2024 4623 0.816018 CACACCCCACAAAGCGTACA 60.816 55.000 0.00 0.00 0.00 2.90
2025 4624 0.816421 ACACACCCCACAAAGCGTAC 60.816 55.000 0.00 0.00 0.00 3.67
2026 4625 0.107116 AACACACCCCACAAAGCGTA 60.107 50.000 0.00 0.00 0.00 4.42
2027 4626 0.968393 AAACACACCCCACAAAGCGT 60.968 50.000 0.00 0.00 0.00 5.07
2028 4627 1.025812 TAAACACACCCCACAAAGCG 58.974 50.000 0.00 0.00 0.00 4.68
2029 4628 3.131400 TCTTTAAACACACCCCACAAAGC 59.869 43.478 0.00 0.00 0.00 3.51
2030 4629 4.993029 TCTTTAAACACACCCCACAAAG 57.007 40.909 0.00 0.00 0.00 2.77
2031 4630 4.773149 ACTTCTTTAAACACACCCCACAAA 59.227 37.500 0.00 0.00 0.00 2.83
2032 4631 4.345854 ACTTCTTTAAACACACCCCACAA 58.654 39.130 0.00 0.00 0.00 3.33
2033 4632 3.970842 ACTTCTTTAAACACACCCCACA 58.029 40.909 0.00 0.00 0.00 4.17
2034 4633 4.643334 AGAACTTCTTTAAACACACCCCAC 59.357 41.667 0.00 0.00 0.00 4.61
2035 4634 4.862371 AGAACTTCTTTAAACACACCCCA 58.138 39.130 0.00 0.00 0.00 4.96
2036 4635 5.126545 ACAAGAACTTCTTTAAACACACCCC 59.873 40.000 0.92 0.00 33.78 4.95
2037 4636 6.203808 ACAAGAACTTCTTTAAACACACCC 57.796 37.500 0.92 0.00 33.78 4.61
2038 4637 7.810759 TCAAACAAGAACTTCTTTAAACACACC 59.189 33.333 0.92 0.00 33.78 4.16
2039 4638 8.736751 TCAAACAAGAACTTCTTTAAACACAC 57.263 30.769 0.92 0.00 33.78 3.82
2040 4639 9.921637 AATCAAACAAGAACTTCTTTAAACACA 57.078 25.926 0.92 0.00 33.78 3.72
2042 4641 9.921637 ACAATCAAACAAGAACTTCTTTAAACA 57.078 25.926 0.92 0.00 33.78 2.83
2127 4726 1.001641 GGGTGCAACAGATCTGCCT 60.002 57.895 22.83 7.38 39.98 4.75
2132 4731 1.555075 TCCTAGTGGGTGCAACAGATC 59.445 52.381 3.06 0.00 39.98 2.75
2217 4816 2.391130 TGGGCCACCACCTTCACTT 61.391 57.895 0.00 0.00 43.37 3.16
2273 4872 9.673454 GTACCACTTGTTAGGATTAAACAAAAG 57.327 33.333 3.33 0.00 43.98 2.27
2293 4892 6.857777 ATAGTAGATGACGTGTAGTACCAC 57.142 41.667 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.