Multiple sequence alignment - TraesCS5A01G001200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G001200 chr5A 100.000 2366 0 0 1 2366 1115440 1113075 0.000000e+00 4370
1 TraesCS5A01G001200 chr5A 94.922 709 35 1 1 709 1140458 1139751 0.000000e+00 1109
2 TraesCS5A01G001200 chr5A 87.500 656 60 14 970 1616 1201301 1200659 0.000000e+00 737
3 TraesCS5A01G001200 chr5A 97.872 188 4 0 2179 2366 386695741 386695554 2.270000e-85 326
4 TraesCS5A01G001200 chr5A 95.855 193 8 0 2174 2366 53013521 53013713 1.770000e-81 313
5 TraesCS5A01G001200 chr5A 95.855 193 8 0 2174 2366 386689001 386688809 1.770000e-81 313
6 TraesCS5A01G001200 chr5A 79.494 356 52 4 1845 2179 1200647 1200292 1.410000e-57 233
7 TraesCS5A01G001200 chrUn 94.468 705 39 0 1 705 115391672 115392376 0.000000e+00 1086
8 TraesCS5A01G001200 chr5D 94.358 709 37 1 1 709 298785293 298784588 0.000000e+00 1085
9 TraesCS5A01G001200 chr5D 93.935 709 42 1 1 709 41217021 41216314 0.000000e+00 1070
10 TraesCS5A01G001200 chr5D 94.051 706 40 2 1 705 467209694 467210398 0.000000e+00 1070
11 TraesCS5A01G001200 chr5D 88.796 714 69 5 970 1673 2120873 2120161 0.000000e+00 865
12 TraesCS5A01G001200 chr5D 84.197 753 70 25 1466 2178 2119398 2118655 0.000000e+00 686
13 TraesCS5A01G001200 chr5D 95.855 193 8 0 2174 2366 42331068 42330876 1.770000e-81 313
14 TraesCS5A01G001200 chr5D 88.083 193 23 0 1892 2084 2119765 2119573 1.830000e-56 230
15 TraesCS5A01G001200 chr5D 80.827 266 38 6 1053 1317 2118491 2118238 1.860000e-46 196
16 TraesCS5A01G001200 chr6D 94.184 705 41 0 1 705 283468036 283467332 0.000000e+00 1075
17 TraesCS5A01G001200 chr6D 94.193 706 40 1 1 706 456592854 456593558 0.000000e+00 1075
18 TraesCS5A01G001200 chr6D 95.855 193 8 0 2174 2366 473010669 473010861 1.770000e-81 313
19 TraesCS5A01G001200 chr2D 94.043 705 42 0 1 705 225145605 225146309 0.000000e+00 1070
20 TraesCS5A01G001200 chr2D 93.113 726 43 7 1 722 326447300 326448022 0.000000e+00 1057
21 TraesCS5A01G001200 chr2D 95.855 193 8 0 2174 2366 619738593 619738401 1.770000e-81 313
22 TraesCS5A01G001200 chr5B 80.595 1278 158 36 985 2179 4061079 4062349 0.000000e+00 904
23 TraesCS5A01G001200 chr2A 96.373 193 7 0 2174 2366 150102940 150103132 3.790000e-83 318
24 TraesCS5A01G001200 chr7D 95.855 193 8 0 2174 2366 398150505 398150313 1.770000e-81 313
25 TraesCS5A01G001200 chr3D 93.627 204 13 0 2163 2366 111448317 111448520 2.950000e-79 305


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G001200 chr5A 1113075 1115440 2365 True 4370.00 4370 100.00000 1 2366 1 chr5A.!!$R1 2365
1 TraesCS5A01G001200 chr5A 1139751 1140458 707 True 1109.00 1109 94.92200 1 709 1 chr5A.!!$R2 708
2 TraesCS5A01G001200 chr5A 1200292 1201301 1009 True 485.00 737 83.49700 970 2179 2 chr5A.!!$R5 1209
3 TraesCS5A01G001200 chrUn 115391672 115392376 704 False 1086.00 1086 94.46800 1 705 1 chrUn.!!$F1 704
4 TraesCS5A01G001200 chr5D 298784588 298785293 705 True 1085.00 1085 94.35800 1 709 1 chr5D.!!$R3 708
5 TraesCS5A01G001200 chr5D 41216314 41217021 707 True 1070.00 1070 93.93500 1 709 1 chr5D.!!$R1 708
6 TraesCS5A01G001200 chr5D 467209694 467210398 704 False 1070.00 1070 94.05100 1 705 1 chr5D.!!$F1 704
7 TraesCS5A01G001200 chr5D 2118238 2120873 2635 True 494.25 865 85.47575 970 2178 4 chr5D.!!$R4 1208
8 TraesCS5A01G001200 chr6D 283467332 283468036 704 True 1075.00 1075 94.18400 1 705 1 chr6D.!!$R1 704
9 TraesCS5A01G001200 chr6D 456592854 456593558 704 False 1075.00 1075 94.19300 1 706 1 chr6D.!!$F1 705
10 TraesCS5A01G001200 chr2D 225145605 225146309 704 False 1070.00 1070 94.04300 1 705 1 chr2D.!!$F1 704
11 TraesCS5A01G001200 chr2D 326447300 326448022 722 False 1057.00 1057 93.11300 1 722 1 chr2D.!!$F2 721
12 TraesCS5A01G001200 chr5B 4061079 4062349 1270 False 904.00 904 80.59500 985 2179 1 chr5B.!!$F1 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 927 0.038166 ATGACACCACACCCACCATC 59.962 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1884 0.82501 GGGTGCCTATCATGCAAGGG 60.825 60.0 13.26 3.2 41.06 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 3.691118 GCATTCTGCAGTTTAGTCCATCA 59.309 43.478 14.67 0.00 44.26 3.07
181 182 5.829924 CAGTTTAGTCCATCAATATTGCCCT 59.170 40.000 10.76 4.45 0.00 5.19
200 201 4.207165 CCCTTTTACACTGATACCCATGG 58.793 47.826 4.14 4.14 0.00 3.66
220 221 7.619698 CCCATGGATATGTAGTGTAGATCCTTA 59.380 40.741 15.22 0.00 37.54 2.69
271 272 3.491342 GTTGCTTTTCTCCCTCTTTCCT 58.509 45.455 0.00 0.00 0.00 3.36
293 296 3.137728 TCCCTTTCCTTTCTTCTCGGTTT 59.862 43.478 0.00 0.00 0.00 3.27
296 299 4.822350 CCTTTCCTTTCTTCTCGGTTTTCT 59.178 41.667 0.00 0.00 0.00 2.52
466 469 5.615289 GATCTGTATCCCAGTTTGTGCTAT 58.385 41.667 0.00 0.00 42.19 2.97
584 587 1.620822 GCCCCTGCCTTGTATTATGG 58.379 55.000 0.00 0.00 0.00 2.74
641 644 4.020573 TGTTGTGATATCTTCCCGTGAGTT 60.021 41.667 3.98 0.00 0.00 3.01
713 716 3.824414 GGGGACGTCACAACTTTTATG 57.176 47.619 21.40 0.00 0.00 1.90
714 717 3.143728 GGGGACGTCACAACTTTTATGT 58.856 45.455 21.40 0.00 0.00 2.29
715 718 3.566742 GGGGACGTCACAACTTTTATGTT 59.433 43.478 21.40 0.00 0.00 2.71
716 719 4.037089 GGGGACGTCACAACTTTTATGTTT 59.963 41.667 21.40 0.00 0.00 2.83
717 720 5.450826 GGGGACGTCACAACTTTTATGTTTT 60.451 40.000 21.40 0.00 0.00 2.43
718 721 6.037726 GGGACGTCACAACTTTTATGTTTTT 58.962 36.000 18.91 0.00 0.00 1.94
744 747 9.581099 TTTGTCGCTATGTGTATATATACATGG 57.419 33.333 26.60 24.88 44.25 3.66
750 753 8.891671 CTATGTGTATATATACATGGCATGCA 57.108 34.615 26.60 15.58 44.25 3.96
751 754 9.498176 CTATGTGTATATATACATGGCATGCAT 57.502 33.333 26.60 21.55 44.25 3.96
752 755 7.556733 TGTGTATATATACATGGCATGCATG 57.443 36.000 26.70 22.70 44.25 4.06
753 756 6.038492 TGTGTATATATACATGGCATGCATGC 59.962 38.462 38.01 38.01 46.87 4.06
754 757 5.236911 TGTATATATACATGGCATGCATGCG 59.763 40.000 37.77 28.47 44.77 4.73
755 758 5.466393 GTATATATACATGGCATGCATGCGA 59.534 40.000 37.77 35.89 45.36 5.10
756 759 6.564686 GTATATATACATGGCATGCATGCGAC 60.565 42.308 37.77 27.75 44.13 5.19
757 760 8.846055 GTATATATACATGGCATGCATGCGACA 61.846 40.741 37.77 31.69 44.13 4.35
761 764 4.556052 GCATGCATGCGACAAACA 57.444 50.000 33.99 0.00 44.67 2.83
762 765 2.811792 GCATGCATGCGACAAACAA 58.188 47.368 33.99 0.00 44.67 2.83
763 766 1.138337 GCATGCATGCGACAAACAAA 58.862 45.000 33.99 0.00 44.67 2.83
764 767 1.727880 GCATGCATGCGACAAACAAAT 59.272 42.857 33.99 0.00 44.67 2.32
765 768 2.473212 GCATGCATGCGACAAACAAATG 60.473 45.455 33.99 8.73 44.67 2.32
766 769 1.138337 TGCATGCGACAAACAAATGC 58.862 45.000 14.09 0.00 43.08 3.56
767 770 1.269673 TGCATGCGACAAACAAATGCT 60.270 42.857 14.09 0.00 43.17 3.79
768 771 1.387756 GCATGCGACAAACAAATGCTC 59.612 47.619 0.00 0.00 40.34 4.26
769 772 1.987770 CATGCGACAAACAAATGCTCC 59.012 47.619 0.00 0.00 0.00 4.70
770 773 0.040514 TGCGACAAACAAATGCTCCG 60.041 50.000 0.00 0.00 0.00 4.63
771 774 1.337110 GCGACAAACAAATGCTCCGC 61.337 55.000 0.00 0.00 32.74 5.54
772 775 0.238289 CGACAAACAAATGCTCCGCT 59.762 50.000 0.00 0.00 0.00 5.52
773 776 1.689959 GACAAACAAATGCTCCGCTG 58.310 50.000 0.00 0.00 0.00 5.18
774 777 1.266718 GACAAACAAATGCTCCGCTGA 59.733 47.619 0.00 0.00 0.00 4.26
775 778 1.888512 ACAAACAAATGCTCCGCTGAT 59.111 42.857 0.00 0.00 0.00 2.90
776 779 2.256174 CAAACAAATGCTCCGCTGATG 58.744 47.619 0.00 0.00 0.00 3.07
777 780 0.171903 AACAAATGCTCCGCTGATGC 59.828 50.000 0.00 0.00 0.00 3.91
778 781 1.065273 CAAATGCTCCGCTGATGCC 59.935 57.895 0.00 0.00 35.36 4.40
779 782 2.475466 AAATGCTCCGCTGATGCCG 61.475 57.895 0.00 0.00 35.36 5.69
780 783 4.923942 ATGCTCCGCTGATGCCGG 62.924 66.667 0.00 0.00 35.36 6.13
795 798 3.981308 CGGTGGCTGACGGAAAAT 58.019 55.556 0.00 0.00 0.00 1.82
796 799 1.794222 CGGTGGCTGACGGAAAATC 59.206 57.895 0.00 0.00 0.00 2.17
797 800 1.794222 GGTGGCTGACGGAAAATCG 59.206 57.895 0.00 0.00 0.00 3.34
798 801 1.644786 GGTGGCTGACGGAAAATCGG 61.645 60.000 0.00 0.00 0.00 4.18
799 802 2.038269 TGGCTGACGGAAAATCGGC 61.038 57.895 0.00 0.00 46.03 5.54
800 803 2.791927 GCTGACGGAAAATCGGCC 59.208 61.111 0.00 0.00 41.78 6.13
801 804 2.038269 GCTGACGGAAAATCGGCCA 61.038 57.895 2.24 0.00 41.78 5.36
802 805 1.794222 CTGACGGAAAATCGGCCAC 59.206 57.895 2.24 0.00 37.36 5.01
803 806 1.966493 CTGACGGAAAATCGGCCACG 61.966 60.000 2.24 0.00 37.36 4.94
804 807 2.744709 ACGGAAAATCGGCCACGG 60.745 61.111 2.24 0.00 41.39 4.94
805 808 2.744709 CGGAAAATCGGCCACGGT 60.745 61.111 2.24 0.00 41.39 4.83
806 809 2.874751 GGAAAATCGGCCACGGTG 59.125 61.111 2.24 0.00 41.39 4.94
807 810 2.696759 GGAAAATCGGCCACGGTGG 61.697 63.158 22.87 22.87 41.55 4.61
808 811 1.969589 GAAAATCGGCCACGGTGGT 60.970 57.895 26.86 6.47 40.46 4.16
809 812 2.195123 GAAAATCGGCCACGGTGGTG 62.195 60.000 26.86 19.59 40.46 4.17
814 817 4.572571 GGCCACGGTGGTGACCAA 62.573 66.667 26.86 0.00 45.22 3.67
818 821 2.915869 ACGGTGGTGACCAAGCTT 59.084 55.556 5.57 0.00 43.33 3.74
819 822 1.525995 ACGGTGGTGACCAAGCTTG 60.526 57.895 19.93 19.93 43.33 4.01
820 823 1.227823 CGGTGGTGACCAAGCTTGA 60.228 57.895 28.05 4.99 43.33 3.02
821 824 1.507141 CGGTGGTGACCAAGCTTGAC 61.507 60.000 28.05 19.81 43.33 3.18
822 825 1.172812 GGTGGTGACCAAGCTTGACC 61.173 60.000 28.05 24.99 42.59 4.02
823 826 1.227823 TGGTGACCAAGCTTGACCG 60.228 57.895 28.05 13.52 0.00 4.79
824 827 1.227853 GGTGACCAAGCTTGACCGT 60.228 57.895 28.05 16.78 0.00 4.83
825 828 1.507141 GGTGACCAAGCTTGACCGTG 61.507 60.000 28.05 12.76 0.00 4.94
826 829 1.891919 TGACCAAGCTTGACCGTGC 60.892 57.895 28.05 11.15 0.00 5.34
827 830 1.891919 GACCAAGCTTGACCGTGCA 60.892 57.895 28.05 0.00 0.00 4.57
828 831 1.228245 ACCAAGCTTGACCGTGCAT 60.228 52.632 28.05 0.00 0.00 3.96
829 832 1.210931 CCAAGCTTGACCGTGCATG 59.789 57.895 28.05 3.56 0.00 4.06
830 833 1.443194 CAAGCTTGACCGTGCATGC 60.443 57.895 22.31 11.82 38.72 4.06
831 834 1.898094 AAGCTTGACCGTGCATGCA 60.898 52.632 18.46 18.46 40.29 3.96
832 835 1.246056 AAGCTTGACCGTGCATGCAT 61.246 50.000 25.64 8.04 40.29 3.96
833 836 0.392863 AGCTTGACCGTGCATGCATA 60.393 50.000 25.64 5.58 40.29 3.14
834 837 0.451383 GCTTGACCGTGCATGCATAA 59.549 50.000 25.64 12.82 38.42 1.90
835 838 1.532505 GCTTGACCGTGCATGCATAAG 60.533 52.381 25.64 21.13 38.42 1.73
836 839 1.064505 CTTGACCGTGCATGCATAAGG 59.935 52.381 25.64 26.72 0.00 2.69
837 840 0.747644 TGACCGTGCATGCATAAGGG 60.748 55.000 30.15 25.89 0.00 3.95
838 841 1.447317 GACCGTGCATGCATAAGGGG 61.447 60.000 30.15 24.06 0.00 4.79
839 842 2.723746 CGTGCATGCATAAGGGGC 59.276 61.111 25.64 7.95 0.00 5.80
840 843 1.825191 CGTGCATGCATAAGGGGCT 60.825 57.895 25.64 0.00 0.00 5.19
841 844 1.789078 CGTGCATGCATAAGGGGCTC 61.789 60.000 25.64 6.36 0.00 4.70
842 845 0.466922 GTGCATGCATAAGGGGCTCT 60.467 55.000 25.64 0.00 0.00 4.09
843 846 0.179009 TGCATGCATAAGGGGCTCTC 60.179 55.000 18.46 0.00 0.00 3.20
844 847 0.110104 GCATGCATAAGGGGCTCTCT 59.890 55.000 14.21 0.00 0.00 3.10
845 848 1.349026 GCATGCATAAGGGGCTCTCTA 59.651 52.381 14.21 0.00 0.00 2.43
846 849 2.026449 GCATGCATAAGGGGCTCTCTAT 60.026 50.000 14.21 0.00 0.00 1.98
847 850 3.607741 CATGCATAAGGGGCTCTCTATG 58.392 50.000 0.00 10.42 0.00 2.23
848 851 1.349026 TGCATAAGGGGCTCTCTATGC 59.651 52.381 23.29 23.29 39.75 3.14
854 857 3.631046 GGCTCTCTATGCCCCGGG 61.631 72.222 15.80 15.80 44.32 5.73
855 858 3.631046 GCTCTCTATGCCCCGGGG 61.631 72.222 37.09 37.09 38.57 5.73
870 873 4.221422 GGGCCTGCGAGCGACATA 62.221 66.667 0.84 0.00 0.00 2.29
871 874 2.659897 GGCCTGCGAGCGACATAG 60.660 66.667 0.00 0.00 0.00 2.23
872 875 2.413351 GCCTGCGAGCGACATAGA 59.587 61.111 0.00 0.00 0.00 1.98
873 876 1.946650 GCCTGCGAGCGACATAGAC 60.947 63.158 0.00 0.00 0.00 2.59
874 877 1.433471 CCTGCGAGCGACATAGACA 59.567 57.895 0.00 0.00 0.00 3.41
875 878 0.593518 CCTGCGAGCGACATAGACAG 60.594 60.000 0.00 0.00 0.00 3.51
876 879 0.378610 CTGCGAGCGACATAGACAGA 59.621 55.000 0.00 0.00 0.00 3.41
877 880 0.378610 TGCGAGCGACATAGACAGAG 59.621 55.000 0.00 0.00 0.00 3.35
878 881 0.378962 GCGAGCGACATAGACAGAGT 59.621 55.000 0.00 0.00 0.00 3.24
879 882 1.598132 GCGAGCGACATAGACAGAGTA 59.402 52.381 0.00 0.00 0.00 2.59
880 883 2.600320 GCGAGCGACATAGACAGAGTAC 60.600 54.545 0.00 0.00 0.00 2.73
881 884 2.032722 CGAGCGACATAGACAGAGTACC 60.033 54.545 0.00 0.00 0.00 3.34
882 885 1.941294 AGCGACATAGACAGAGTACCG 59.059 52.381 0.00 0.00 0.00 4.02
883 886 1.597445 GCGACATAGACAGAGTACCGC 60.597 57.143 0.00 0.00 0.00 5.68
884 887 1.002684 CGACATAGACAGAGTACCGCC 60.003 57.143 0.00 0.00 0.00 6.13
885 888 2.022195 GACATAGACAGAGTACCGCCA 58.978 52.381 0.00 0.00 0.00 5.69
886 889 2.025155 ACATAGACAGAGTACCGCCAG 58.975 52.381 0.00 0.00 0.00 4.85
887 890 2.298610 CATAGACAGAGTACCGCCAGA 58.701 52.381 0.00 0.00 0.00 3.86
888 891 1.747709 TAGACAGAGTACCGCCAGAC 58.252 55.000 0.00 0.00 0.00 3.51
889 892 0.966370 AGACAGAGTACCGCCAGACC 60.966 60.000 0.00 0.00 0.00 3.85
890 893 1.228769 ACAGAGTACCGCCAGACCA 60.229 57.895 0.00 0.00 0.00 4.02
891 894 0.614979 ACAGAGTACCGCCAGACCAT 60.615 55.000 0.00 0.00 0.00 3.55
892 895 0.103208 CAGAGTACCGCCAGACCATC 59.897 60.000 0.00 0.00 0.00 3.51
893 896 1.043673 AGAGTACCGCCAGACCATCC 61.044 60.000 0.00 0.00 0.00 3.51
894 897 1.305802 AGTACCGCCAGACCATCCA 60.306 57.895 0.00 0.00 0.00 3.41
895 898 0.691078 AGTACCGCCAGACCATCCAT 60.691 55.000 0.00 0.00 0.00 3.41
896 899 1.045407 GTACCGCCAGACCATCCATA 58.955 55.000 0.00 0.00 0.00 2.74
897 900 1.414919 GTACCGCCAGACCATCCATAA 59.585 52.381 0.00 0.00 0.00 1.90
898 901 0.916086 ACCGCCAGACCATCCATAAA 59.084 50.000 0.00 0.00 0.00 1.40
899 902 1.494721 ACCGCCAGACCATCCATAAAT 59.505 47.619 0.00 0.00 0.00 1.40
900 903 2.708861 ACCGCCAGACCATCCATAAATA 59.291 45.455 0.00 0.00 0.00 1.40
901 904 3.244561 ACCGCCAGACCATCCATAAATAG 60.245 47.826 0.00 0.00 0.00 1.73
902 905 3.338249 CGCCAGACCATCCATAAATAGG 58.662 50.000 0.00 0.00 0.00 2.57
903 906 3.690460 GCCAGACCATCCATAAATAGGG 58.310 50.000 0.00 0.00 0.00 3.53
904 907 3.074538 GCCAGACCATCCATAAATAGGGT 59.925 47.826 0.00 0.00 0.00 4.34
905 908 4.288626 GCCAGACCATCCATAAATAGGGTA 59.711 45.833 0.00 0.00 0.00 3.69
906 909 5.044846 GCCAGACCATCCATAAATAGGGTAT 60.045 44.000 0.00 0.00 0.00 2.73
907 910 6.418101 CCAGACCATCCATAAATAGGGTATG 58.582 44.000 0.00 0.00 37.37 2.39
908 911 6.215431 CCAGACCATCCATAAATAGGGTATGA 59.785 42.308 0.00 0.00 39.34 2.15
909 912 7.106239 CAGACCATCCATAAATAGGGTATGAC 58.894 42.308 0.00 0.00 39.34 3.06
910 913 6.792473 AGACCATCCATAAATAGGGTATGACA 59.208 38.462 0.00 0.00 31.71 3.58
911 914 6.779860 ACCATCCATAAATAGGGTATGACAC 58.220 40.000 0.00 0.00 31.71 3.67
921 924 3.243128 GTATGACACCACACCCACC 57.757 57.895 0.00 0.00 0.00 4.61
922 925 0.398696 GTATGACACCACACCCACCA 59.601 55.000 0.00 0.00 0.00 4.17
923 926 1.004277 GTATGACACCACACCCACCAT 59.996 52.381 0.00 0.00 0.00 3.55
924 927 0.038166 ATGACACCACACCCACCATC 59.962 55.000 0.00 0.00 0.00 3.51
925 928 1.303317 GACACCACACCCACCATCC 60.303 63.158 0.00 0.00 0.00 3.51
926 929 2.063015 GACACCACACCCACCATCCA 62.063 60.000 0.00 0.00 0.00 3.41
927 930 1.383799 CACCACACCCACCATCCAT 59.616 57.895 0.00 0.00 0.00 3.41
928 931 0.680921 CACCACACCCACCATCCATC 60.681 60.000 0.00 0.00 0.00 3.51
929 932 0.846427 ACCACACCCACCATCCATCT 60.846 55.000 0.00 0.00 0.00 2.90
930 933 1.212375 CCACACCCACCATCCATCTA 58.788 55.000 0.00 0.00 0.00 1.98
931 934 1.776667 CCACACCCACCATCCATCTAT 59.223 52.381 0.00 0.00 0.00 1.98
932 935 2.175499 CCACACCCACCATCCATCTATT 59.825 50.000 0.00 0.00 0.00 1.73
933 936 3.394274 CCACACCCACCATCCATCTATTA 59.606 47.826 0.00 0.00 0.00 0.98
934 937 4.043310 CCACACCCACCATCCATCTATTAT 59.957 45.833 0.00 0.00 0.00 1.28
935 938 5.250543 CCACACCCACCATCCATCTATTATA 59.749 44.000 0.00 0.00 0.00 0.98
936 939 6.409704 CACACCCACCATCCATCTATTATAG 58.590 44.000 0.00 0.00 0.00 1.31
937 940 6.213397 CACACCCACCATCCATCTATTATAGA 59.787 42.308 4.26 4.26 39.50 1.98
938 941 6.441924 ACACCCACCATCCATCTATTATAGAG 59.558 42.308 8.01 0.99 38.38 2.43
939 942 5.426833 ACCCACCATCCATCTATTATAGAGC 59.573 44.000 8.01 0.00 38.38 4.09
940 943 5.163258 CCCACCATCCATCTATTATAGAGCC 60.163 48.000 8.01 0.00 38.38 4.70
941 944 5.426509 CCACCATCCATCTATTATAGAGCCA 59.573 44.000 8.01 0.00 38.38 4.75
942 945 6.100859 CCACCATCCATCTATTATAGAGCCAT 59.899 42.308 8.01 0.00 38.38 4.40
943 946 7.290948 CCACCATCCATCTATTATAGAGCCATA 59.709 40.741 8.01 0.00 38.38 2.74
944 947 8.708378 CACCATCCATCTATTATAGAGCCATAA 58.292 37.037 8.01 0.00 38.38 1.90
945 948 9.284131 ACCATCCATCTATTATAGAGCCATAAA 57.716 33.333 8.01 0.00 38.38 1.40
946 949 9.553064 CCATCCATCTATTATAGAGCCATAAAC 57.447 37.037 8.01 0.00 38.38 2.01
949 952 9.944376 TCCATCTATTATAGAGCCATAAACAAC 57.056 33.333 8.01 0.00 38.38 3.32
950 953 9.725019 CCATCTATTATAGAGCCATAAACAACA 57.275 33.333 8.01 0.00 38.38 3.33
958 961 6.839124 AGAGCCATAAACAACATTTGATCA 57.161 33.333 0.00 0.00 0.00 2.92
959 962 7.230849 AGAGCCATAAACAACATTTGATCAA 57.769 32.000 3.38 3.38 0.00 2.57
960 963 7.844009 AGAGCCATAAACAACATTTGATCAAT 58.156 30.769 9.40 0.00 0.00 2.57
961 964 8.970020 AGAGCCATAAACAACATTTGATCAATA 58.030 29.630 9.40 0.91 0.00 1.90
962 965 8.931385 AGCCATAAACAACATTTGATCAATAC 57.069 30.769 9.40 0.00 0.00 1.89
963 966 8.752187 AGCCATAAACAACATTTGATCAATACT 58.248 29.630 9.40 0.00 0.00 2.12
964 967 9.023967 GCCATAAACAACATTTGATCAATACTC 57.976 33.333 9.40 0.00 0.00 2.59
965 968 9.225201 CCATAAACAACATTTGATCAATACTCG 57.775 33.333 9.40 1.30 0.00 4.18
966 969 9.986833 CATAAACAACATTTGATCAATACTCGA 57.013 29.630 9.40 0.00 0.00 4.04
992 999 4.648762 ACACAAGAATCAATCAACCAACCA 59.351 37.500 0.00 0.00 0.00 3.67
994 1001 5.693104 CACAAGAATCAATCAACCAACCAAG 59.307 40.000 0.00 0.00 0.00 3.61
1003 1010 2.745884 CCAACCAAGCGGCGATGA 60.746 61.111 12.98 0.00 34.57 2.92
1104 1111 1.141881 CACGATGGAGAAGGGGTCG 59.858 63.158 0.00 0.00 38.21 4.79
1108 1115 1.687297 GATGGAGAAGGGGTCGGACC 61.687 65.000 19.06 19.06 37.60 4.46
1145 1152 2.560981 TGCAGATCAAGTACGACAAGGA 59.439 45.455 0.00 0.00 0.00 3.36
1146 1153 3.195610 TGCAGATCAAGTACGACAAGGAT 59.804 43.478 0.00 0.00 0.00 3.24
1203 1210 2.436109 GACTGGCTGCCCCTGAAA 59.564 61.111 17.53 0.00 36.47 2.69
1243 1250 1.205893 GGGAGATCAAGAGCGACAAGT 59.794 52.381 0.00 0.00 0.00 3.16
1317 1324 0.109458 TCTTCGACGATGTTGTCCCG 60.109 55.000 10.18 0.00 35.40 5.14
1330 1337 3.181459 TGTTGTCCCGACAGATTTCAAGA 60.181 43.478 0.00 0.00 42.94 3.02
1331 1338 3.981071 TGTCCCGACAGATTTCAAGAT 57.019 42.857 0.00 0.00 36.21 2.40
1382 1389 3.705051 ACTGAGATTCACCCATGCATTT 58.295 40.909 0.00 0.00 0.00 2.32
1383 1390 4.091549 ACTGAGATTCACCCATGCATTTT 58.908 39.130 0.00 0.00 0.00 1.82
1389 1396 2.323599 TCACCCATGCATTTTGTTCCA 58.676 42.857 0.00 0.00 0.00 3.53
1404 1442 2.835156 TGTTCCACCATTATCGACCTCA 59.165 45.455 0.00 0.00 0.00 3.86
1407 1445 2.430694 TCCACCATTATCGACCTCACAG 59.569 50.000 0.00 0.00 0.00 3.66
1412 1450 4.161565 ACCATTATCGACCTCACAGCTAAA 59.838 41.667 0.00 0.00 0.00 1.85
1446 1488 4.822026 AGGCGCATGGATACTAATAAGTC 58.178 43.478 10.83 0.00 37.15 3.01
1514 1561 4.273300 AGGGAGTAGTAGGAGAAGCAAT 57.727 45.455 0.00 0.00 0.00 3.56
1536 1583 3.521531 TGGCTGGTGGTCAGATGTATTTA 59.478 43.478 0.00 0.00 46.18 1.40
1560 1607 3.041940 CGTGCACCCGTTGTCTCC 61.042 66.667 12.15 0.00 0.00 3.71
1610 1658 9.760660 GTACCGAATCTATTCAATATCATTTGC 57.239 33.333 3.76 0.00 36.61 3.68
1702 1783 7.310634 TGTAGTAGGATTACATTCTACCCCAT 58.689 38.462 0.00 0.00 35.30 4.00
1705 1786 6.849697 AGTAGGATTACATTCTACCCCATGAA 59.150 38.462 0.00 0.00 35.30 2.57
1711 1792 0.539986 TTCTACCCCATGAACGCCTC 59.460 55.000 0.00 0.00 0.00 4.70
1743 1827 5.092554 TGACAACGACCATATGTAACCAT 57.907 39.130 1.24 0.00 34.97 3.55
1748 1832 3.876914 ACGACCATATGTAACCATGCAAG 59.123 43.478 1.24 0.00 32.29 4.01
1749 1833 4.126437 CGACCATATGTAACCATGCAAGA 58.874 43.478 1.24 0.00 32.29 3.02
1750 1834 4.574421 CGACCATATGTAACCATGCAAGAA 59.426 41.667 1.24 0.00 32.29 2.52
1753 1837 6.866480 ACCATATGTAACCATGCAAGAAAAG 58.134 36.000 1.24 0.00 32.29 2.27
1755 1839 7.148018 ACCATATGTAACCATGCAAGAAAAGAG 60.148 37.037 1.24 0.00 32.29 2.85
1758 1842 6.317789 TGTAACCATGCAAGAAAAGAGAAG 57.682 37.500 0.00 0.00 0.00 2.85
1759 1843 6.061441 TGTAACCATGCAAGAAAAGAGAAGA 58.939 36.000 0.00 0.00 0.00 2.87
1761 1845 6.661304 AACCATGCAAGAAAAGAGAAGAAT 57.339 33.333 0.00 0.00 0.00 2.40
1762 1846 6.022163 ACCATGCAAGAAAAGAGAAGAATG 57.978 37.500 0.00 0.00 0.00 2.67
1763 1847 4.863131 CCATGCAAGAAAAGAGAAGAATGC 59.137 41.667 0.00 0.00 0.00 3.56
1764 1848 5.466819 CATGCAAGAAAAGAGAAGAATGCA 58.533 37.500 0.00 0.00 45.36 3.96
1765 1849 5.518848 TGCAAGAAAAGAGAAGAATGCAA 57.481 34.783 0.00 0.00 39.36 4.08
1766 1850 6.092955 TGCAAGAAAAGAGAAGAATGCAAT 57.907 33.333 0.00 0.00 39.36 3.56
1776 1860 7.211966 AGAGAAGAATGCAATAACCATATGC 57.788 36.000 0.00 0.00 0.00 3.14
1785 1869 4.342092 GCAATAACCATATGCAGTCCCTTT 59.658 41.667 0.00 0.00 0.00 3.11
1800 1884 4.762251 AGTCCCTTTGTCTTGATAACTTGC 59.238 41.667 0.00 0.00 0.00 4.01
1806 1890 2.819608 TGTCTTGATAACTTGCCCTTGC 59.180 45.455 0.00 0.00 38.26 4.01
1819 1903 0.825010 CCCTTGCATGATAGGCACCC 60.825 60.000 0.00 0.00 41.75 4.61
1825 1909 4.183223 TGCATGATAGGCACCCTATTTT 57.817 40.909 0.00 0.00 45.78 1.82
1826 1910 4.545678 TGCATGATAGGCACCCTATTTTT 58.454 39.130 0.00 0.00 45.78 1.94
1827 1911 5.700183 TGCATGATAGGCACCCTATTTTTA 58.300 37.500 0.00 0.00 45.78 1.52
1828 1912 6.132658 TGCATGATAGGCACCCTATTTTTAA 58.867 36.000 0.00 0.00 45.78 1.52
1829 1913 6.040391 TGCATGATAGGCACCCTATTTTTAAC 59.960 38.462 0.00 0.00 45.78 2.01
1830 1914 6.668323 CATGATAGGCACCCTATTTTTAACG 58.332 40.000 5.33 0.00 45.78 3.18
1831 1915 4.577283 TGATAGGCACCCTATTTTTAACGC 59.423 41.667 5.33 0.00 45.78 4.84
1832 1916 2.097036 AGGCACCCTATTTTTAACGCC 58.903 47.619 0.00 0.00 38.60 5.68
1833 1917 1.135527 GGCACCCTATTTTTAACGCCC 59.864 52.381 0.00 0.00 32.01 6.13
1834 1918 1.135527 GCACCCTATTTTTAACGCCCC 59.864 52.381 0.00 0.00 0.00 5.80
1835 1919 1.752498 CACCCTATTTTTAACGCCCCC 59.248 52.381 0.00 0.00 0.00 5.40
1836 1920 1.642238 ACCCTATTTTTAACGCCCCCT 59.358 47.619 0.00 0.00 0.00 4.79
1837 1921 2.304092 CCCTATTTTTAACGCCCCCTC 58.696 52.381 0.00 0.00 0.00 4.30
1838 1922 2.304092 CCTATTTTTAACGCCCCCTCC 58.696 52.381 0.00 0.00 0.00 4.30
1839 1923 2.304092 CTATTTTTAACGCCCCCTCCC 58.696 52.381 0.00 0.00 0.00 4.30
1840 1924 0.324923 ATTTTTAACGCCCCCTCCCC 60.325 55.000 0.00 0.00 0.00 4.81
1841 1925 1.727215 TTTTTAACGCCCCCTCCCCA 61.727 55.000 0.00 0.00 0.00 4.96
1842 1926 2.144859 TTTTAACGCCCCCTCCCCAG 62.145 60.000 0.00 0.00 0.00 4.45
1849 1933 3.560251 CCCCTCCCCAGGTATGCG 61.560 72.222 0.00 0.00 38.30 4.73
1853 1937 2.039787 TCCCCAGGTATGCGGTGA 59.960 61.111 0.00 0.00 0.00 4.02
1855 1939 0.105401 TCCCCAGGTATGCGGTGATA 60.105 55.000 0.00 0.00 0.00 2.15
1866 1950 1.003118 TGCGGTGATAACAAGGAGCTT 59.997 47.619 0.00 0.00 0.00 3.74
1879 1963 2.035530 GGAGCTTTCACTCTCCCATG 57.964 55.000 0.00 0.00 42.30 3.66
1886 1970 4.499183 CTTTCACTCTCCCATGTAGTCAC 58.501 47.826 0.00 0.00 0.00 3.67
1888 1972 4.586306 TCACTCTCCCATGTAGTCACTA 57.414 45.455 0.00 0.00 0.00 2.74
1889 1973 4.527944 TCACTCTCCCATGTAGTCACTAG 58.472 47.826 0.00 0.00 0.00 2.57
1930 2964 2.492881 TGTAAGGCGTATTCCAACGAGA 59.507 45.455 0.00 0.00 45.68 4.04
1935 2969 3.118738 AGGCGTATTCCAACGAGAAGATT 60.119 43.478 0.00 0.00 45.68 2.40
1955 2989 0.253347 AGAGAAGGGGCCCATGAAGA 60.253 55.000 27.72 0.00 0.00 2.87
2001 3035 3.243771 ACGCCTTTCTAATAGACCCATCG 60.244 47.826 0.00 0.00 0.00 3.84
2029 3063 5.813157 ACGTTTTTAAAGTGGGAATTTGTGG 59.187 36.000 0.00 0.00 0.00 4.17
2040 3074 1.892474 GAATTTGTGGGGTTGCTAGCA 59.108 47.619 14.93 14.93 0.00 3.49
2048 3082 2.239400 GGGGTTGCTAGCAGTTTCTTT 58.761 47.619 18.45 0.00 0.00 2.52
2179 3236 4.665009 TGGGATTTTGCCTATATGGAGAGT 59.335 41.667 0.00 0.00 38.35 3.24
2180 3237 5.006386 GGGATTTTGCCTATATGGAGAGTG 58.994 45.833 0.00 0.00 38.35 3.51
2181 3238 5.221925 GGGATTTTGCCTATATGGAGAGTGA 60.222 44.000 0.00 0.00 38.35 3.41
2183 3240 6.429385 GGATTTTGCCTATATGGAGAGTGAAG 59.571 42.308 0.00 0.00 38.35 3.02
2185 3242 4.199002 TGCCTATATGGAGAGTGAAGGA 57.801 45.455 0.00 0.00 38.35 3.36
2186 3243 4.556697 TGCCTATATGGAGAGTGAAGGAA 58.443 43.478 0.00 0.00 38.35 3.36
2187 3244 4.968719 TGCCTATATGGAGAGTGAAGGAAA 59.031 41.667 0.00 0.00 38.35 3.13
2188 3245 5.608437 TGCCTATATGGAGAGTGAAGGAAAT 59.392 40.000 0.00 0.00 38.35 2.17
2189 3246 6.787458 TGCCTATATGGAGAGTGAAGGAAATA 59.213 38.462 0.00 0.00 38.35 1.40
2190 3247 7.459125 TGCCTATATGGAGAGTGAAGGAAATAT 59.541 37.037 0.00 0.00 38.35 1.28
2191 3248 7.768120 GCCTATATGGAGAGTGAAGGAAATATG 59.232 40.741 0.00 0.00 38.35 1.78
2192 3249 7.768120 CCTATATGGAGAGTGAAGGAAATATGC 59.232 40.741 0.00 0.00 38.35 3.14
2193 3250 4.156455 TGGAGAGTGAAGGAAATATGCC 57.844 45.455 0.00 0.00 0.00 4.40
2194 3251 3.117888 TGGAGAGTGAAGGAAATATGCCC 60.118 47.826 0.00 0.00 0.00 5.36
2195 3252 3.137360 GGAGAGTGAAGGAAATATGCCCT 59.863 47.826 0.00 0.00 0.00 5.19
2196 3253 4.348168 GGAGAGTGAAGGAAATATGCCCTA 59.652 45.833 0.00 0.00 31.36 3.53
2197 3254 5.512232 GGAGAGTGAAGGAAATATGCCCTAG 60.512 48.000 0.00 0.00 31.36 3.02
2199 3256 5.306678 AGAGTGAAGGAAATATGCCCTAGAG 59.693 44.000 0.00 0.00 31.36 2.43
2200 3257 5.219739 AGTGAAGGAAATATGCCCTAGAGA 58.780 41.667 0.00 0.00 31.36 3.10
2201 3258 5.071115 AGTGAAGGAAATATGCCCTAGAGAC 59.929 44.000 0.00 0.00 31.36 3.36
2202 3259 4.968719 TGAAGGAAATATGCCCTAGAGACA 59.031 41.667 0.00 0.00 31.36 3.41
2204 3261 6.101734 TGAAGGAAATATGCCCTAGAGACAAT 59.898 38.462 0.00 0.00 31.36 2.71
2206 3263 7.633018 AGGAAATATGCCCTAGAGACAATAA 57.367 36.000 0.00 0.00 0.00 1.40
2207 3264 8.224620 AGGAAATATGCCCTAGAGACAATAAT 57.775 34.615 0.00 0.00 0.00 1.28
2208 3265 9.338968 AGGAAATATGCCCTAGAGACAATAATA 57.661 33.333 0.00 0.00 0.00 0.98
2209 3266 9.959721 GGAAATATGCCCTAGAGACAATAATAA 57.040 33.333 0.00 0.00 0.00 1.40
2266 3323 8.874744 ATGCTTATTATTCATGCTAGGATTGT 57.125 30.769 0.00 0.00 0.00 2.71
2267 3324 9.964354 ATGCTTATTATTCATGCTAGGATTGTA 57.036 29.630 0.00 0.00 0.00 2.41
2268 3325 9.964354 TGCTTATTATTCATGCTAGGATTGTAT 57.036 29.630 0.00 0.00 0.00 2.29
2274 3331 7.672983 ATTCATGCTAGGATTGTATTAACCG 57.327 36.000 0.00 0.00 0.00 4.44
2275 3332 5.547465 TCATGCTAGGATTGTATTAACCGG 58.453 41.667 0.00 0.00 0.00 5.28
2276 3333 5.305902 TCATGCTAGGATTGTATTAACCGGA 59.694 40.000 9.46 0.00 0.00 5.14
2277 3334 5.617528 TGCTAGGATTGTATTAACCGGAA 57.382 39.130 9.46 0.00 0.00 4.30
2279 3336 5.818857 TGCTAGGATTGTATTAACCGGAAAC 59.181 40.000 9.46 0.00 0.00 2.78
2281 3338 6.541278 GCTAGGATTGTATTAACCGGAAACTT 59.459 38.462 9.46 0.00 0.00 2.66
2282 3339 7.712205 GCTAGGATTGTATTAACCGGAAACTTA 59.288 37.037 9.46 0.00 0.00 2.24
2283 3340 9.257651 CTAGGATTGTATTAACCGGAAACTTAG 57.742 37.037 9.46 0.00 0.00 2.18
2284 3341 7.627311 AGGATTGTATTAACCGGAAACTTAGT 58.373 34.615 9.46 0.00 0.00 2.24
2287 3344 9.369904 GATTGTATTAACCGGAAACTTAGTACA 57.630 33.333 9.46 10.88 28.23 2.90
2288 3345 9.895138 ATTGTATTAACCGGAAACTTAGTACAT 57.105 29.630 9.46 2.28 29.53 2.29
2293 3350 8.706492 TTAACCGGAAACTTAGTACATATGTG 57.294 34.615 18.81 3.61 0.00 3.21
2294 3351 6.534475 ACCGGAAACTTAGTACATATGTGA 57.466 37.500 18.81 0.77 0.00 3.58
2296 3353 7.562135 ACCGGAAACTTAGTACATATGTGAAT 58.438 34.615 18.81 6.57 0.00 2.57
2297 3354 8.698210 ACCGGAAACTTAGTACATATGTGAATA 58.302 33.333 18.81 5.62 0.00 1.75
2298 3355 8.975439 CCGGAAACTTAGTACATATGTGAATAC 58.025 37.037 18.81 8.42 0.00 1.89
2299 3356 9.524106 CGGAAACTTAGTACATATGTGAATACA 57.476 33.333 18.81 0.00 41.89 2.29
2330 3387 5.528043 CAGAATGTCACTAGTATGCCTCT 57.472 43.478 0.00 0.00 0.00 3.69
2331 3388 6.641169 CAGAATGTCACTAGTATGCCTCTA 57.359 41.667 0.00 0.00 0.00 2.43
2332 3389 6.442952 CAGAATGTCACTAGTATGCCTCTAC 58.557 44.000 0.00 0.00 0.00 2.59
2334 3391 6.836527 AGAATGTCACTAGTATGCCTCTACTT 59.163 38.462 0.00 0.00 33.96 2.24
2335 3392 5.836821 TGTCACTAGTATGCCTCTACTTG 57.163 43.478 0.00 0.00 33.96 3.16
2336 3393 5.506708 TGTCACTAGTATGCCTCTACTTGA 58.493 41.667 0.00 0.18 33.96 3.02
2337 3394 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
2339 3396 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
2340 3397 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
2342 3399 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
2343 3400 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
2344 3401 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
2345 3402 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
2346 3403 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
2347 3404 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
2350 3407 2.726832 ACTTGACTAGCTCGTTGGTC 57.273 50.000 0.00 0.00 0.00 4.02
2351 3408 1.961394 ACTTGACTAGCTCGTTGGTCA 59.039 47.619 0.00 0.00 37.00 4.02
2352 3409 2.364324 ACTTGACTAGCTCGTTGGTCAA 59.636 45.455 11.02 11.02 43.46 3.18
2353 3410 3.181469 ACTTGACTAGCTCGTTGGTCAAA 60.181 43.478 12.19 0.51 44.46 2.69
2354 3411 3.026630 TGACTAGCTCGTTGGTCAAAG 57.973 47.619 0.00 0.00 36.04 2.77
2355 3412 2.626266 TGACTAGCTCGTTGGTCAAAGA 59.374 45.455 0.00 0.06 36.04 2.52
2358 3415 1.813513 AGCTCGTTGGTCAAAGATGG 58.186 50.000 0.30 0.00 0.00 3.51
2359 3416 1.072331 AGCTCGTTGGTCAAAGATGGT 59.928 47.619 0.30 0.00 0.00 3.55
2360 3417 1.880027 GCTCGTTGGTCAAAGATGGTT 59.120 47.619 0.30 0.00 0.00 3.67
2361 3418 3.071479 GCTCGTTGGTCAAAGATGGTTA 58.929 45.455 0.30 0.00 0.00 2.85
2362 3419 3.689649 GCTCGTTGGTCAAAGATGGTTAT 59.310 43.478 0.30 0.00 0.00 1.89
2364 3421 4.647611 TCGTTGGTCAAAGATGGTTATGT 58.352 39.130 0.00 0.00 0.00 2.29
2365 3422 5.067273 TCGTTGGTCAAAGATGGTTATGTT 58.933 37.500 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.001974 CGCATAGCATAAGCCTACCCA 59.998 52.381 0.00 0.00 43.56 4.51
171 172 6.549736 GGGTATCAGTGTAAAAGGGCAATATT 59.450 38.462 0.00 0.00 0.00 1.28
181 182 7.811282 ACATATCCATGGGTATCAGTGTAAAA 58.189 34.615 15.02 0.00 36.39 1.52
200 201 7.751348 CGCAAGTAAGGATCTACACTACATATC 59.249 40.741 0.00 0.00 0.00 1.63
220 221 3.006967 ACTCATCCAAAGTACTCGCAAGT 59.993 43.478 0.00 0.00 39.66 3.16
271 272 2.335933 ACCGAGAAGAAAGGAAAGGGA 58.664 47.619 0.00 0.00 0.00 4.20
391 394 3.447944 CCTCCTAAACTACTCCTGGTCAC 59.552 52.174 0.00 0.00 0.00 3.67
392 395 3.335786 TCCTCCTAAACTACTCCTGGTCA 59.664 47.826 0.00 0.00 0.00 4.02
466 469 7.340999 AGTTAAACAAGTTTGCCTTAAGAAGGA 59.659 33.333 9.48 0.00 41.20 3.36
572 575 6.767902 AGTCATACAAGCACCATAATACAAGG 59.232 38.462 0.00 0.00 0.00 3.61
641 644 3.014623 ACGTGTACGATCAAGATCAGGA 58.985 45.455 11.79 0.00 43.02 3.86
718 721 9.581099 CCATGTATATATACACATAGCGACAAA 57.419 33.333 24.43 1.19 45.11 2.83
719 722 7.704899 GCCATGTATATATACACATAGCGACAA 59.295 37.037 24.43 1.37 45.11 3.18
720 723 7.147983 TGCCATGTATATATACACATAGCGACA 60.148 37.037 24.43 12.86 45.11 4.35
721 724 7.200455 TGCCATGTATATATACACATAGCGAC 58.800 38.462 24.43 10.92 45.11 5.19
722 725 7.341445 TGCCATGTATATATACACATAGCGA 57.659 36.000 24.43 13.36 45.11 4.93
723 726 7.359514 GCATGCCATGTATATATACACATAGCG 60.360 40.741 24.43 14.36 45.11 4.26
724 727 7.442062 TGCATGCCATGTATATATACACATAGC 59.558 37.037 24.43 23.16 45.11 2.97
725 728 8.891671 TGCATGCCATGTATATATACACATAG 57.108 34.615 24.43 17.30 45.11 2.23
726 729 9.275398 CATGCATGCCATGTATATATACACATA 57.725 33.333 24.43 13.34 45.11 2.29
727 730 8.161699 CATGCATGCCATGTATATATACACAT 57.838 34.615 24.43 19.78 45.11 3.21
728 731 7.556733 CATGCATGCCATGTATATATACACA 57.443 36.000 24.43 18.63 45.11 3.72
745 748 2.473212 GCATTTGTTTGTCGCATGCATG 60.473 45.455 22.70 22.70 40.06 4.06
746 749 1.727880 GCATTTGTTTGTCGCATGCAT 59.272 42.857 19.57 0.00 40.06 3.96
747 750 1.138337 GCATTTGTTTGTCGCATGCA 58.862 45.000 19.57 1.73 40.06 3.96
748 751 1.387756 GAGCATTTGTTTGTCGCATGC 59.612 47.619 7.91 7.91 40.53 4.06
749 752 1.987770 GGAGCATTTGTTTGTCGCATG 59.012 47.619 0.00 0.00 0.00 4.06
750 753 1.401409 CGGAGCATTTGTTTGTCGCAT 60.401 47.619 0.00 0.00 0.00 4.73
751 754 0.040514 CGGAGCATTTGTTTGTCGCA 60.041 50.000 0.00 0.00 0.00 5.10
752 755 2.712077 CGGAGCATTTGTTTGTCGC 58.288 52.632 0.00 0.00 0.00 5.19
777 780 1.644786 GATTTTCCGTCAGCCACCGG 61.645 60.000 0.00 0.00 45.55 5.28
778 781 1.794222 GATTTTCCGTCAGCCACCG 59.206 57.895 0.00 0.00 0.00 4.94
779 782 1.644786 CCGATTTTCCGTCAGCCACC 61.645 60.000 0.00 0.00 0.00 4.61
780 783 1.794222 CCGATTTTCCGTCAGCCAC 59.206 57.895 0.00 0.00 0.00 5.01
781 784 2.038269 GCCGATTTTCCGTCAGCCA 61.038 57.895 0.00 0.00 0.00 4.75
782 785 2.761195 GGCCGATTTTCCGTCAGCC 61.761 63.158 0.00 0.00 0.00 4.85
783 786 2.038269 TGGCCGATTTTCCGTCAGC 61.038 57.895 0.00 0.00 0.00 4.26
784 787 1.794222 GTGGCCGATTTTCCGTCAG 59.206 57.895 0.00 0.00 0.00 3.51
785 788 2.030401 CGTGGCCGATTTTCCGTCA 61.030 57.895 0.00 0.00 35.63 4.35
786 789 2.746803 CCGTGGCCGATTTTCCGTC 61.747 63.158 0.00 0.00 35.63 4.79
787 790 2.744709 CCGTGGCCGATTTTCCGT 60.745 61.111 0.00 0.00 35.63 4.69
788 791 2.744709 ACCGTGGCCGATTTTCCG 60.745 61.111 0.00 0.00 35.63 4.30
789 792 2.696759 CCACCGTGGCCGATTTTCC 61.697 63.158 4.16 0.00 35.63 3.13
790 793 1.969589 ACCACCGTGGCCGATTTTC 60.970 57.895 17.99 0.00 42.67 2.29
791 794 2.114411 ACCACCGTGGCCGATTTT 59.886 55.556 17.99 0.00 42.67 1.82
792 795 2.671619 CACCACCGTGGCCGATTT 60.672 61.111 17.99 0.00 42.67 2.17
793 796 3.632080 TCACCACCGTGGCCGATT 61.632 61.111 17.99 0.00 42.67 3.34
794 797 4.388499 GTCACCACCGTGGCCGAT 62.388 66.667 17.99 0.00 42.67 4.18
803 806 1.172812 GGTCAAGCTTGGTCACCACC 61.173 60.000 25.73 19.72 44.10 4.61
804 807 1.507141 CGGTCAAGCTTGGTCACCAC 61.507 60.000 26.60 17.23 30.78 4.16
805 808 1.227823 CGGTCAAGCTTGGTCACCA 60.228 57.895 26.60 7.71 0.00 4.17
806 809 1.227853 ACGGTCAAGCTTGGTCACC 60.228 57.895 25.73 22.86 0.00 4.02
807 810 1.941812 CACGGTCAAGCTTGGTCAC 59.058 57.895 25.73 16.33 0.00 3.67
808 811 1.891919 GCACGGTCAAGCTTGGTCA 60.892 57.895 25.73 4.28 0.00 4.02
809 812 1.237285 ATGCACGGTCAAGCTTGGTC 61.237 55.000 25.73 17.97 0.00 4.02
810 813 1.228245 ATGCACGGTCAAGCTTGGT 60.228 52.632 25.73 13.37 0.00 3.67
811 814 1.210931 CATGCACGGTCAAGCTTGG 59.789 57.895 25.73 12.70 33.69 3.61
812 815 1.443194 GCATGCACGGTCAAGCTTG 60.443 57.895 20.81 20.81 38.49 4.01
813 816 1.246056 ATGCATGCACGGTCAAGCTT 61.246 50.000 25.37 0.00 32.48 3.74
814 817 0.392863 TATGCATGCACGGTCAAGCT 60.393 50.000 25.37 6.17 32.48 3.74
815 818 0.451383 TTATGCATGCACGGTCAAGC 59.549 50.000 25.37 0.00 0.00 4.01
816 819 1.064505 CCTTATGCATGCACGGTCAAG 59.935 52.381 25.37 18.92 0.00 3.02
817 820 1.093972 CCTTATGCATGCACGGTCAA 58.906 50.000 25.37 10.97 0.00 3.18
818 821 0.747644 CCCTTATGCATGCACGGTCA 60.748 55.000 25.37 0.00 0.00 4.02
819 822 1.447317 CCCCTTATGCATGCACGGTC 61.447 60.000 25.37 0.00 0.00 4.79
820 823 1.453745 CCCCTTATGCATGCACGGT 60.454 57.895 25.37 10.39 0.00 4.83
821 824 2.848858 GCCCCTTATGCATGCACGG 61.849 63.158 25.37 22.11 0.00 4.94
822 825 1.789078 GAGCCCCTTATGCATGCACG 61.789 60.000 25.37 14.23 0.00 5.34
823 826 0.466922 AGAGCCCCTTATGCATGCAC 60.467 55.000 25.37 8.45 0.00 4.57
824 827 0.179009 GAGAGCCCCTTATGCATGCA 60.179 55.000 25.04 25.04 0.00 3.96
825 828 0.110104 AGAGAGCCCCTTATGCATGC 59.890 55.000 11.82 11.82 0.00 4.06
826 829 3.607741 CATAGAGAGCCCCTTATGCATG 58.392 50.000 10.16 0.00 0.00 4.06
827 830 2.026449 GCATAGAGAGCCCCTTATGCAT 60.026 50.000 3.79 3.79 39.79 3.96
828 831 1.349026 GCATAGAGAGCCCCTTATGCA 59.651 52.381 13.04 0.00 39.79 3.96
829 832 1.339535 GGCATAGAGAGCCCCTTATGC 60.340 57.143 10.66 10.66 46.50 3.14
830 833 2.777832 GGCATAGAGAGCCCCTTATG 57.222 55.000 0.00 0.00 46.50 1.90
838 841 3.631046 CCCCGGGGCATAGAGAGC 61.631 72.222 31.01 0.00 0.00 4.09
853 856 4.221422 TATGTCGCTCGCAGGCCC 62.221 66.667 0.00 0.00 0.00 5.80
854 857 2.659897 CTATGTCGCTCGCAGGCC 60.660 66.667 0.00 0.00 0.00 5.19
855 858 1.946650 GTCTATGTCGCTCGCAGGC 60.947 63.158 0.00 0.00 0.00 4.85
856 859 0.593518 CTGTCTATGTCGCTCGCAGG 60.594 60.000 0.00 0.00 0.00 4.85
857 860 0.378610 TCTGTCTATGTCGCTCGCAG 59.621 55.000 0.00 0.00 0.00 5.18
858 861 0.378610 CTCTGTCTATGTCGCTCGCA 59.621 55.000 0.00 0.00 0.00 5.10
859 862 0.378962 ACTCTGTCTATGTCGCTCGC 59.621 55.000 0.00 0.00 0.00 5.03
860 863 2.032722 GGTACTCTGTCTATGTCGCTCG 60.033 54.545 0.00 0.00 0.00 5.03
861 864 2.032722 CGGTACTCTGTCTATGTCGCTC 60.033 54.545 0.00 0.00 0.00 5.03
862 865 1.941294 CGGTACTCTGTCTATGTCGCT 59.059 52.381 0.00 0.00 0.00 4.93
863 866 1.597445 GCGGTACTCTGTCTATGTCGC 60.597 57.143 0.00 0.00 0.00 5.19
864 867 1.002684 GGCGGTACTCTGTCTATGTCG 60.003 57.143 0.00 0.00 0.00 4.35
865 868 2.022195 TGGCGGTACTCTGTCTATGTC 58.978 52.381 0.00 0.00 0.00 3.06
866 869 2.025155 CTGGCGGTACTCTGTCTATGT 58.975 52.381 0.00 0.00 0.00 2.29
867 870 2.033550 GTCTGGCGGTACTCTGTCTATG 59.966 54.545 0.00 0.00 0.00 2.23
868 871 2.299521 GTCTGGCGGTACTCTGTCTAT 58.700 52.381 0.00 0.00 0.00 1.98
869 872 1.681166 GGTCTGGCGGTACTCTGTCTA 60.681 57.143 0.00 0.00 0.00 2.59
870 873 0.966370 GGTCTGGCGGTACTCTGTCT 60.966 60.000 0.00 0.00 0.00 3.41
871 874 1.248785 TGGTCTGGCGGTACTCTGTC 61.249 60.000 0.00 0.00 0.00 3.51
872 875 0.614979 ATGGTCTGGCGGTACTCTGT 60.615 55.000 0.00 0.00 0.00 3.41
873 876 0.103208 GATGGTCTGGCGGTACTCTG 59.897 60.000 0.00 0.00 0.00 3.35
874 877 1.043673 GGATGGTCTGGCGGTACTCT 61.044 60.000 0.00 0.00 0.00 3.24
875 878 1.327690 TGGATGGTCTGGCGGTACTC 61.328 60.000 0.00 0.00 0.00 2.59
876 879 0.691078 ATGGATGGTCTGGCGGTACT 60.691 55.000 0.00 0.00 0.00 2.73
877 880 1.045407 TATGGATGGTCTGGCGGTAC 58.955 55.000 0.00 0.00 0.00 3.34
878 881 1.796017 TTATGGATGGTCTGGCGGTA 58.204 50.000 0.00 0.00 0.00 4.02
879 882 0.916086 TTTATGGATGGTCTGGCGGT 59.084 50.000 0.00 0.00 0.00 5.68
880 883 2.276732 ATTTATGGATGGTCTGGCGG 57.723 50.000 0.00 0.00 0.00 6.13
881 884 3.338249 CCTATTTATGGATGGTCTGGCG 58.662 50.000 0.00 0.00 0.00 5.69
882 885 3.074538 ACCCTATTTATGGATGGTCTGGC 59.925 47.826 0.00 0.00 0.00 4.85
883 886 6.215431 TCATACCCTATTTATGGATGGTCTGG 59.785 42.308 0.00 0.00 0.00 3.86
884 887 7.106239 GTCATACCCTATTTATGGATGGTCTG 58.894 42.308 0.00 0.00 0.00 3.51
885 888 6.792473 TGTCATACCCTATTTATGGATGGTCT 59.208 38.462 0.00 0.00 0.00 3.85
886 889 6.879458 GTGTCATACCCTATTTATGGATGGTC 59.121 42.308 0.00 0.00 0.00 4.02
887 890 6.240176 GGTGTCATACCCTATTTATGGATGGT 60.240 42.308 0.00 0.00 44.15 3.55
888 891 6.180472 GGTGTCATACCCTATTTATGGATGG 58.820 44.000 0.00 0.00 44.15 3.51
903 906 0.398696 TGGTGGGTGTGGTGTCATAC 59.601 55.000 0.00 0.00 34.75 2.39
904 907 1.280710 GATGGTGGGTGTGGTGTCATA 59.719 52.381 0.00 0.00 0.00 2.15
905 908 0.038166 GATGGTGGGTGTGGTGTCAT 59.962 55.000 0.00 0.00 0.00 3.06
906 909 1.454104 GATGGTGGGTGTGGTGTCA 59.546 57.895 0.00 0.00 0.00 3.58
907 910 1.303317 GGATGGTGGGTGTGGTGTC 60.303 63.158 0.00 0.00 0.00 3.67
908 911 1.434513 ATGGATGGTGGGTGTGGTGT 61.435 55.000 0.00 0.00 0.00 4.16
909 912 0.680921 GATGGATGGTGGGTGTGGTG 60.681 60.000 0.00 0.00 0.00 4.17
910 913 0.846427 AGATGGATGGTGGGTGTGGT 60.846 55.000 0.00 0.00 0.00 4.16
911 914 1.212375 TAGATGGATGGTGGGTGTGG 58.788 55.000 0.00 0.00 0.00 4.17
912 915 3.582998 AATAGATGGATGGTGGGTGTG 57.417 47.619 0.00 0.00 0.00 3.82
913 916 6.331032 TCTATAATAGATGGATGGTGGGTGT 58.669 40.000 0.00 0.00 0.00 4.16
914 917 6.631314 GCTCTATAATAGATGGATGGTGGGTG 60.631 46.154 0.00 0.00 33.66 4.61
915 918 5.426833 GCTCTATAATAGATGGATGGTGGGT 59.573 44.000 0.00 0.00 33.66 4.51
916 919 5.163258 GGCTCTATAATAGATGGATGGTGGG 60.163 48.000 0.00 0.00 33.66 4.61
917 920 5.426509 TGGCTCTATAATAGATGGATGGTGG 59.573 44.000 0.00 0.00 33.66 4.61
918 921 6.550938 TGGCTCTATAATAGATGGATGGTG 57.449 41.667 0.00 0.00 33.66 4.17
919 922 8.860517 TTATGGCTCTATAATAGATGGATGGT 57.139 34.615 0.00 0.00 33.66 3.55
920 923 9.553064 GTTTATGGCTCTATAATAGATGGATGG 57.447 37.037 0.00 0.00 33.66 3.51
923 926 9.944376 GTTGTTTATGGCTCTATAATAGATGGA 57.056 33.333 0.00 0.00 33.66 3.41
924 927 9.725019 TGTTGTTTATGGCTCTATAATAGATGG 57.275 33.333 0.00 0.00 33.66 3.51
932 935 9.625747 TGATCAAATGTTGTTTATGGCTCTATA 57.374 29.630 0.00 0.00 0.00 1.31
933 936 8.523915 TGATCAAATGTTGTTTATGGCTCTAT 57.476 30.769 0.00 0.00 0.00 1.98
934 937 7.936496 TGATCAAATGTTGTTTATGGCTCTA 57.064 32.000 0.00 0.00 0.00 2.43
935 938 6.839124 TGATCAAATGTTGTTTATGGCTCT 57.161 33.333 0.00 0.00 0.00 4.09
936 939 9.023967 GTATTGATCAAATGTTGTTTATGGCTC 57.976 33.333 13.09 0.00 0.00 4.70
937 940 8.752187 AGTATTGATCAAATGTTGTTTATGGCT 58.248 29.630 13.09 0.00 0.00 4.75
938 941 8.931385 AGTATTGATCAAATGTTGTTTATGGC 57.069 30.769 13.09 0.00 0.00 4.40
939 942 9.225201 CGAGTATTGATCAAATGTTGTTTATGG 57.775 33.333 13.09 0.00 0.00 2.74
940 943 9.986833 TCGAGTATTGATCAAATGTTGTTTATG 57.013 29.630 13.09 0.00 0.00 1.90
944 947 9.988350 GTAATCGAGTATTGATCAAATGTTGTT 57.012 29.630 13.09 5.53 38.60 2.83
945 948 9.161629 TGTAATCGAGTATTGATCAAATGTTGT 57.838 29.630 13.09 0.00 38.60 3.32
946 949 9.425893 GTGTAATCGAGTATTGATCAAATGTTG 57.574 33.333 13.09 3.94 38.60 3.33
947 950 9.161629 TGTGTAATCGAGTATTGATCAAATGTT 57.838 29.630 13.09 0.00 38.60 2.71
948 951 8.716646 TGTGTAATCGAGTATTGATCAAATGT 57.283 30.769 13.09 0.00 38.60 2.71
949 952 9.642312 CTTGTGTAATCGAGTATTGATCAAATG 57.358 33.333 13.09 1.13 38.60 2.32
950 953 9.599866 TCTTGTGTAATCGAGTATTGATCAAAT 57.400 29.630 13.09 1.32 38.60 2.32
951 954 8.996024 TCTTGTGTAATCGAGTATTGATCAAA 57.004 30.769 13.09 0.00 38.60 2.69
952 955 8.996024 TTCTTGTGTAATCGAGTATTGATCAA 57.004 30.769 11.26 11.26 38.60 2.57
953 956 9.249457 GATTCTTGTGTAATCGAGTATTGATCA 57.751 33.333 0.00 0.00 38.60 2.92
954 957 9.249457 TGATTCTTGTGTAATCGAGTATTGATC 57.751 33.333 0.00 0.00 38.60 2.92
955 958 9.599866 TTGATTCTTGTGTAATCGAGTATTGAT 57.400 29.630 0.00 0.00 42.29 2.57
956 959 8.996024 TTGATTCTTGTGTAATCGAGTATTGA 57.004 30.769 0.00 0.00 36.35 2.57
957 960 9.855361 GATTGATTCTTGTGTAATCGAGTATTG 57.145 33.333 0.00 0.00 36.35 1.90
958 961 9.599866 TGATTGATTCTTGTGTAATCGAGTATT 57.400 29.630 0.00 0.00 36.35 1.89
959 962 9.599866 TTGATTGATTCTTGTGTAATCGAGTAT 57.400 29.630 0.00 0.00 36.35 2.12
960 963 8.869897 GTTGATTGATTCTTGTGTAATCGAGTA 58.130 33.333 0.00 0.00 36.35 2.59
961 964 7.148407 GGTTGATTGATTCTTGTGTAATCGAGT 60.148 37.037 0.00 0.00 36.35 4.18
962 965 7.148423 TGGTTGATTGATTCTTGTGTAATCGAG 60.148 37.037 0.00 0.00 36.35 4.04
963 966 6.652900 TGGTTGATTGATTCTTGTGTAATCGA 59.347 34.615 0.00 0.00 36.35 3.59
964 967 6.841119 TGGTTGATTGATTCTTGTGTAATCG 58.159 36.000 0.00 0.00 36.35 3.34
965 968 7.542130 GGTTGGTTGATTGATTCTTGTGTAATC 59.458 37.037 0.00 0.00 34.55 1.75
966 969 7.015098 TGGTTGGTTGATTGATTCTTGTGTAAT 59.985 33.333 0.00 0.00 0.00 1.89
967 970 6.322456 TGGTTGGTTGATTGATTCTTGTGTAA 59.678 34.615 0.00 0.00 0.00 2.41
968 971 5.830457 TGGTTGGTTGATTGATTCTTGTGTA 59.170 36.000 0.00 0.00 0.00 2.90
992 999 2.682893 GATGAAGTCATCGCCGCTT 58.317 52.632 5.57 0.00 42.66 4.68
1003 1010 3.376218 GCATCCTGCTCGATGAAGT 57.624 52.632 15.22 0.00 41.92 3.01
1023 1030 4.016706 GCCACCACCACCGCTACT 62.017 66.667 0.00 0.00 0.00 2.57
1081 1088 0.250234 CCCTTCTCCATCGTGAAGCA 59.750 55.000 0.00 0.00 37.98 3.91
1090 1097 1.689582 GGTCCGACCCCTTCTCCAT 60.690 63.158 6.25 0.00 30.04 3.41
1104 1111 1.883021 CACCAAATGCTTCGGGTCC 59.117 57.895 0.00 0.00 0.00 4.46
1117 1124 2.426522 GTACTTGATCTGCAGCACCAA 58.573 47.619 9.47 11.38 0.00 3.67
1145 1152 0.463295 CTCCTTCATGCTGTCGCCAT 60.463 55.000 0.00 0.00 34.43 4.40
1146 1153 1.078918 CTCCTTCATGCTGTCGCCA 60.079 57.895 0.00 0.00 34.43 5.69
1308 1315 2.920724 TGAAATCTGTCGGGACAACA 57.079 45.000 2.81 0.00 41.33 3.33
1311 1318 3.676049 CGATCTTGAAATCTGTCGGGACA 60.676 47.826 1.05 1.05 39.32 4.02
1317 1324 2.352960 GGTGCCGATCTTGAAATCTGTC 59.647 50.000 0.00 0.00 0.00 3.51
1330 1337 1.078426 GCTTGTAGGTGGTGCCGAT 60.078 57.895 0.00 0.00 43.70 4.18
1331 1338 2.345991 GCTTGTAGGTGGTGCCGA 59.654 61.111 0.00 0.00 43.70 5.54
1382 1389 3.262151 TGAGGTCGATAATGGTGGAACAA 59.738 43.478 0.00 0.00 44.16 2.83
1383 1390 2.835156 TGAGGTCGATAATGGTGGAACA 59.165 45.455 0.00 0.00 39.98 3.18
1389 1396 2.111384 AGCTGTGAGGTCGATAATGGT 58.889 47.619 0.00 0.00 0.00 3.55
1404 1442 3.627577 CCTTATGGCACGATTTTAGCTGT 59.372 43.478 0.00 0.00 0.00 4.40
1463 1505 9.920946 TCCTGAATTAGACAATTAATTTAGGCT 57.079 29.630 17.66 0.00 46.28 4.58
1464 1506 9.952188 GTCCTGAATTAGACAATTAATTTAGGC 57.048 33.333 17.66 12.20 46.28 3.93
1486 1528 2.173143 CTCCTACTACTCCCTTCGTCCT 59.827 54.545 0.00 0.00 0.00 3.85
1514 1561 1.583556 ATACATCTGACCACCAGCCA 58.416 50.000 0.00 0.00 42.62 4.75
1518 1565 5.128827 GGAGAGTAAATACATCTGACCACCA 59.871 44.000 0.00 0.00 0.00 4.17
1521 1568 4.341235 CGGGAGAGTAAATACATCTGACCA 59.659 45.833 0.00 0.00 0.00 4.02
1526 1573 3.704566 TGCACGGGAGAGTAAATACATCT 59.295 43.478 0.00 0.00 0.00 2.90
1676 1756 7.310634 TGGGGTAGAATGTAATCCTACTACAT 58.689 38.462 0.00 0.00 40.84 2.29
1677 1757 6.685541 TGGGGTAGAATGTAATCCTACTACA 58.314 40.000 0.00 0.00 33.93 2.74
1683 1763 5.454755 CGTTCATGGGGTAGAATGTAATCCT 60.455 44.000 0.00 0.00 0.00 3.24
1685 1765 4.213482 GCGTTCATGGGGTAGAATGTAATC 59.787 45.833 0.00 0.00 34.16 1.75
1686 1766 4.134563 GCGTTCATGGGGTAGAATGTAAT 58.865 43.478 0.00 0.00 34.16 1.89
1687 1767 3.537580 GCGTTCATGGGGTAGAATGTAA 58.462 45.455 0.00 0.00 34.16 2.41
1689 1769 1.408266 GGCGTTCATGGGGTAGAATGT 60.408 52.381 0.00 0.00 34.16 2.71
1690 1770 1.134098 AGGCGTTCATGGGGTAGAATG 60.134 52.381 0.00 0.00 34.64 2.67
1691 1771 1.141053 GAGGCGTTCATGGGGTAGAAT 59.859 52.381 0.00 0.00 0.00 2.40
1692 1772 0.539986 GAGGCGTTCATGGGGTAGAA 59.460 55.000 0.00 0.00 0.00 2.10
1693 1773 1.672854 CGAGGCGTTCATGGGGTAGA 61.673 60.000 0.00 0.00 0.00 2.59
1697 1778 4.096003 ACCGAGGCGTTCATGGGG 62.096 66.667 0.00 0.00 0.00 4.96
1724 1805 3.625313 TGCATGGTTACATATGGTCGTTG 59.375 43.478 7.80 0.00 34.99 4.10
1728 1809 6.449635 TTTCTTGCATGGTTACATATGGTC 57.550 37.500 7.80 0.00 34.99 4.02
1743 1827 5.518848 TTGCATTCTTCTCTTTTCTTGCA 57.481 34.783 0.00 0.00 37.10 4.08
1750 1834 8.139989 GCATATGGTTATTGCATTCTTCTCTTT 58.860 33.333 4.56 0.00 0.00 2.52
1753 1837 6.973843 TGCATATGGTTATTGCATTCTTCTC 58.026 36.000 4.56 0.00 0.00 2.87
1755 1839 6.742109 ACTGCATATGGTTATTGCATTCTTC 58.258 36.000 4.56 0.00 34.85 2.87
1758 1842 5.464168 GGACTGCATATGGTTATTGCATTC 58.536 41.667 4.56 6.07 35.41 2.67
1759 1843 4.281688 GGGACTGCATATGGTTATTGCATT 59.718 41.667 4.56 0.00 34.85 3.56
1761 1845 3.117550 AGGGACTGCATATGGTTATTGCA 60.118 43.478 4.56 0.00 37.18 4.08
1762 1846 3.490348 AGGGACTGCATATGGTTATTGC 58.510 45.455 4.56 0.00 37.18 3.56
1763 1847 5.360714 ACAAAGGGACTGCATATGGTTATTG 59.639 40.000 4.56 2.86 40.86 1.90
1764 1848 5.518865 ACAAAGGGACTGCATATGGTTATT 58.481 37.500 4.56 0.00 40.86 1.40
1765 1849 5.103940 AGACAAAGGGACTGCATATGGTTAT 60.104 40.000 4.56 0.00 40.86 1.89
1766 1850 4.227300 AGACAAAGGGACTGCATATGGTTA 59.773 41.667 4.56 0.00 40.86 2.85
1776 1860 5.335191 GCAAGTTATCAAGACAAAGGGACTG 60.335 44.000 0.00 0.00 40.86 3.51
1785 1869 2.819608 GCAAGGGCAAGTTATCAAGACA 59.180 45.455 0.00 0.00 40.72 3.41
1800 1884 0.825010 GGGTGCCTATCATGCAAGGG 60.825 60.000 13.26 3.20 41.06 3.95
1806 1890 6.668323 CGTTAAAAATAGGGTGCCTATCATG 58.332 40.000 0.00 0.00 45.14 3.07
1811 1895 3.281158 GGCGTTAAAAATAGGGTGCCTA 58.719 45.455 0.00 0.00 40.71 3.93
1812 1896 2.097036 GGCGTTAAAAATAGGGTGCCT 58.903 47.619 0.00 0.00 38.22 4.75
1819 1903 2.304092 GGGAGGGGGCGTTAAAAATAG 58.696 52.381 0.00 0.00 0.00 1.73
1825 1909 3.012722 CTGGGGAGGGGGCGTTAA 61.013 66.667 0.00 0.00 0.00 2.01
1829 1913 4.900259 ATACCTGGGGAGGGGGCG 62.900 72.222 0.00 0.00 0.00 6.13
1830 1914 3.178611 CATACCTGGGGAGGGGGC 61.179 72.222 0.00 0.00 0.00 5.80
1831 1915 3.178611 GCATACCTGGGGAGGGGG 61.179 72.222 0.00 0.00 0.00 5.40
1832 1916 3.560251 CGCATACCTGGGGAGGGG 61.560 72.222 0.00 0.00 0.00 4.79
1838 1922 1.140052 TGTTATCACCGCATACCTGGG 59.860 52.381 0.00 0.00 35.19 4.45
1839 1923 2.613026 TGTTATCACCGCATACCTGG 57.387 50.000 0.00 0.00 0.00 4.45
1840 1924 2.872245 CCTTGTTATCACCGCATACCTG 59.128 50.000 0.00 0.00 0.00 4.00
1841 1925 2.769663 TCCTTGTTATCACCGCATACCT 59.230 45.455 0.00 0.00 0.00 3.08
1842 1926 3.131396 CTCCTTGTTATCACCGCATACC 58.869 50.000 0.00 0.00 0.00 2.73
1843 1927 2.544267 GCTCCTTGTTATCACCGCATAC 59.456 50.000 0.00 0.00 0.00 2.39
1849 1933 4.327680 AGTGAAAGCTCCTTGTTATCACC 58.672 43.478 0.00 0.00 37.10 4.02
1853 1937 4.837972 GGAGAGTGAAAGCTCCTTGTTAT 58.162 43.478 0.00 0.00 45.72 1.89
1855 1939 3.133141 GGAGAGTGAAAGCTCCTTGTT 57.867 47.619 0.00 0.00 45.72 2.83
1866 1950 3.779444 AGTGACTACATGGGAGAGTGAA 58.221 45.455 0.00 0.00 0.00 3.18
1876 1960 8.579863 TCCATTCATATCACTAGTGACTACATG 58.420 37.037 27.41 23.63 43.11 3.21
1878 1962 7.998964 TCTCCATTCATATCACTAGTGACTACA 59.001 37.037 27.41 13.30 43.11 2.74
1879 1963 8.293867 GTCTCCATTCATATCACTAGTGACTAC 58.706 40.741 27.41 7.15 43.11 2.73
1886 1970 6.041409 ACACTGGTCTCCATTCATATCACTAG 59.959 42.308 0.00 0.00 30.82 2.57
1888 1972 4.718774 ACACTGGTCTCCATTCATATCACT 59.281 41.667 0.00 0.00 30.82 3.41
1889 1973 5.028549 ACACTGGTCTCCATTCATATCAC 57.971 43.478 0.00 0.00 30.82 3.06
1930 2964 2.286935 TGGGCCCCTTCTCTAATCTT 57.713 50.000 22.27 0.00 0.00 2.40
1935 2969 1.009552 TCTTCATGGGCCCCTTCTCTA 59.990 52.381 22.27 0.00 0.00 2.43
1955 2989 0.887933 CAAACATTTGGCCCTAGCGT 59.112 50.000 0.00 0.00 41.24 5.07
2001 3035 8.444715 ACAAATTCCCACTTTAAAAACGTTTTC 58.555 29.630 25.37 0.00 0.00 2.29
2029 3063 2.884639 TCAAAGAAACTGCTAGCAACCC 59.115 45.455 19.86 8.28 0.00 4.11
2048 3082 5.163055 CCCCTCCAAAATCATATCTCCTTCA 60.163 44.000 0.00 0.00 0.00 3.02
2179 3236 4.968719 TGTCTCTAGGGCATATTTCCTTCA 59.031 41.667 0.00 0.00 34.75 3.02
2180 3237 5.552870 TGTCTCTAGGGCATATTTCCTTC 57.447 43.478 0.00 0.00 34.75 3.46
2181 3238 5.975988 TTGTCTCTAGGGCATATTTCCTT 57.024 39.130 0.00 0.00 34.75 3.36
2183 3240 9.959721 TTATTATTGTCTCTAGGGCATATTTCC 57.040 33.333 0.00 0.00 0.00 3.13
2240 3297 9.305555 ACAATCCTAGCATGAATAATAAGCATT 57.694 29.630 0.00 0.00 0.00 3.56
2241 3298 8.874744 ACAATCCTAGCATGAATAATAAGCAT 57.125 30.769 0.00 0.00 0.00 3.79
2242 3299 9.964354 ATACAATCCTAGCATGAATAATAAGCA 57.036 29.630 0.00 0.00 0.00 3.91
2248 3305 9.214957 CGGTTAATACAATCCTAGCATGAATAA 57.785 33.333 0.00 0.00 0.00 1.40
2249 3306 7.822334 CCGGTTAATACAATCCTAGCATGAATA 59.178 37.037 0.00 0.00 0.00 1.75
2252 3309 5.305902 TCCGGTTAATACAATCCTAGCATGA 59.694 40.000 0.00 0.00 0.00 3.07
2253 3310 5.547465 TCCGGTTAATACAATCCTAGCATG 58.453 41.667 0.00 0.00 0.00 4.06
2254 3311 5.818678 TCCGGTTAATACAATCCTAGCAT 57.181 39.130 0.00 0.00 0.00 3.79
2256 3313 6.053650 AGTTTCCGGTTAATACAATCCTAGC 58.946 40.000 0.00 0.00 0.00 3.42
2257 3314 9.257651 CTAAGTTTCCGGTTAATACAATCCTAG 57.742 37.037 0.00 0.00 0.00 3.02
2259 3316 7.627311 ACTAAGTTTCCGGTTAATACAATCCT 58.373 34.615 0.00 0.00 0.00 3.24
2260 3317 7.854557 ACTAAGTTTCCGGTTAATACAATCC 57.145 36.000 0.00 0.00 0.00 3.01
2261 3318 9.369904 TGTACTAAGTTTCCGGTTAATACAATC 57.630 33.333 0.00 0.00 0.00 2.67
2267 3324 9.321562 CACATATGTACTAAGTTTCCGGTTAAT 57.678 33.333 8.32 0.00 0.00 1.40
2268 3325 8.530311 TCACATATGTACTAAGTTTCCGGTTAA 58.470 33.333 8.32 0.00 0.00 2.01
2269 3326 8.065473 TCACATATGTACTAAGTTTCCGGTTA 57.935 34.615 8.32 0.00 0.00 2.85
2270 3327 6.938507 TCACATATGTACTAAGTTTCCGGTT 58.061 36.000 8.32 0.00 0.00 4.44
2271 3328 6.534475 TCACATATGTACTAAGTTTCCGGT 57.466 37.500 8.32 0.00 0.00 5.28
2272 3329 8.975439 GTATTCACATATGTACTAAGTTTCCGG 58.025 37.037 8.32 0.00 0.00 5.14
2273 3330 9.524106 TGTATTCACATATGTACTAAGTTTCCG 57.476 33.333 8.32 0.00 0.00 4.30
2303 3360 6.942576 AGGCATACTAGTGACATTCTGTTTTT 59.057 34.615 5.39 0.00 0.00 1.94
2304 3361 6.476378 AGGCATACTAGTGACATTCTGTTTT 58.524 36.000 5.39 0.00 0.00 2.43
2305 3362 6.054860 AGGCATACTAGTGACATTCTGTTT 57.945 37.500 5.39 0.00 0.00 2.83
2306 3363 5.423610 AGAGGCATACTAGTGACATTCTGTT 59.576 40.000 5.39 0.00 0.00 3.16
2309 3366 6.369629 AGTAGAGGCATACTAGTGACATTCT 58.630 40.000 5.39 6.02 34.21 2.40
2310 3367 6.642707 AGTAGAGGCATACTAGTGACATTC 57.357 41.667 5.39 0.00 34.21 2.67
2311 3368 6.607600 TCAAGTAGAGGCATACTAGTGACATT 59.392 38.462 5.39 0.00 34.90 2.71
2312 3369 6.039941 GTCAAGTAGAGGCATACTAGTGACAT 59.960 42.308 19.41 0.00 40.28 3.06
2313 3370 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
2314 3371 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
2315 3372 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
2316 3373 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
2317 3374 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
2318 3375 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
2319 3376 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
2320 3377 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
2321 3378 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
2323 3380 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
2324 3381 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
2325 3382 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
2326 3383 3.181495 CCAACGAGCTAGTCAAGTAGAGG 60.181 52.174 0.00 0.00 0.00 3.69
2327 3384 3.440872 ACCAACGAGCTAGTCAAGTAGAG 59.559 47.826 0.00 0.00 0.00 2.43
2328 3385 3.418995 ACCAACGAGCTAGTCAAGTAGA 58.581 45.455 0.00 0.00 0.00 2.59
2329 3386 3.190744 TGACCAACGAGCTAGTCAAGTAG 59.809 47.826 0.00 0.00 36.36 2.57
2330 3387 3.151554 TGACCAACGAGCTAGTCAAGTA 58.848 45.455 0.00 0.00 36.36 2.24
2331 3388 1.961394 TGACCAACGAGCTAGTCAAGT 59.039 47.619 0.00 0.00 36.36 3.16
2332 3389 2.724977 TGACCAACGAGCTAGTCAAG 57.275 50.000 0.00 0.00 36.36 3.02
2334 3391 2.626266 TCTTTGACCAACGAGCTAGTCA 59.374 45.455 0.00 0.00 37.46 3.41
2335 3392 3.299340 TCTTTGACCAACGAGCTAGTC 57.701 47.619 0.00 0.00 0.00 2.59
2336 3393 3.589988 CATCTTTGACCAACGAGCTAGT 58.410 45.455 0.00 0.00 0.00 2.57
2337 3394 2.932614 CCATCTTTGACCAACGAGCTAG 59.067 50.000 0.00 0.00 0.00 3.42
2339 3396 1.072331 ACCATCTTTGACCAACGAGCT 59.928 47.619 0.00 0.00 0.00 4.09
2340 3397 1.523758 ACCATCTTTGACCAACGAGC 58.476 50.000 0.00 0.00 0.00 5.03
2342 3399 4.647611 ACATAACCATCTTTGACCAACGA 58.352 39.130 0.00 0.00 0.00 3.85
2343 3400 5.371115 AACATAACCATCTTTGACCAACG 57.629 39.130 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.