Multiple sequence alignment - TraesCS4D01G365700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G365700 chr4D 100.000 4060 0 0 1 4060 509648977 509653036 0.000000e+00 7498.0
1 TraesCS4D01G365700 chr4D 82.287 446 46 17 1504 1945 97933398 97932982 4.990000e-94 355.0
2 TraesCS4D01G365700 chr5A 86.955 2499 181 66 684 3082 698501908 698504361 0.000000e+00 2675.0
3 TraesCS4D01G365700 chr5A 88.937 922 96 6 3140 4060 45447601 45446685 0.000000e+00 1133.0
4 TraesCS4D01G365700 chr5A 88.976 127 10 2 6 128 698501837 698501963 1.950000e-33 154.0
5 TraesCS4D01G365700 chr4B 89.187 2164 139 42 982 3082 657184500 657182369 0.000000e+00 2612.0
6 TraesCS4D01G365700 chr4B 93.333 90 3 3 288 376 501882782 501882695 3.290000e-26 130.0
7 TraesCS4D01G365700 chr4B 96.078 51 2 0 601 651 657184587 657184537 2.600000e-12 84.2
8 TraesCS4D01G365700 chr6B 97.828 921 18 2 3140 4060 408677314 408676396 0.000000e+00 1589.0
9 TraesCS4D01G365700 chr4A 92.541 925 61 4 3141 4060 706099827 706100748 0.000000e+00 1319.0
10 TraesCS4D01G365700 chr4A 92.216 925 64 4 3141 4060 705963503 705964424 0.000000e+00 1303.0
11 TraesCS4D01G365700 chr4A 92.108 925 61 5 3141 4060 705910333 705911250 0.000000e+00 1293.0
12 TraesCS4D01G365700 chr4A 91.676 925 51 9 3140 4060 707473253 707472351 0.000000e+00 1258.0
13 TraesCS4D01G365700 chr4A 88.499 913 95 10 3140 4049 45152613 45151708 0.000000e+00 1096.0
14 TraesCS4D01G365700 chr4A 91.753 97 4 4 288 381 650040959 650040864 9.160000e-27 132.0
15 TraesCS4D01G365700 chrUn 92.994 885 58 3 3141 4024 343524175 343525056 0.000000e+00 1288.0
16 TraesCS4D01G365700 chr1A 89.274 923 92 7 3140 4060 516050679 516049762 0.000000e+00 1149.0
17 TraesCS4D01G365700 chr5D 98.857 175 2 0 117 291 528841820 528841994 3.050000e-81 313.0
18 TraesCS4D01G365700 chr5D 98.305 177 3 0 118 294 486175306 486175130 1.100000e-80 311.0
19 TraesCS4D01G365700 chr5D 95.402 87 3 1 288 373 118203239 118203153 1.970000e-28 137.0
20 TraesCS4D01G365700 chr3A 90.323 248 10 5 126 372 682364471 682364705 3.050000e-81 313.0
21 TraesCS4D01G365700 chr2D 94.608 204 8 3 94 294 44329699 44329496 3.050000e-81 313.0
22 TraesCS4D01G365700 chr2D 97.222 180 3 2 115 294 12376949 12377126 1.830000e-78 303.0
23 TraesCS4D01G365700 chr2D 92.391 92 6 1 288 379 613097030 613097120 3.290000e-26 130.0
24 TraesCS4D01G365700 chr3D 98.295 176 2 1 121 296 598206532 598206706 1.420000e-79 307.0
25 TraesCS4D01G365700 chr3D 97.740 177 3 1 113 289 336587987 336588162 1.830000e-78 303.0
26 TraesCS4D01G365700 chr7D 98.830 171 2 0 126 296 204448599 204448429 5.100000e-79 305.0
27 TraesCS4D01G365700 chr7D 97.222 180 5 0 119 298 588769955 588769776 5.100000e-79 305.0
28 TraesCS4D01G365700 chr7A 72.869 833 196 24 3168 3986 712969062 712968246 4.030000e-65 259.0
29 TraesCS4D01G365700 chr6D 93.204 103 7 0 263 365 249445828 249445726 7.030000e-33 152.0
30 TraesCS4D01G365700 chr1D 98.718 78 1 0 288 365 373985852 373985775 5.470000e-29 139.0
31 TraesCS4D01G365700 chr2B 97.500 80 2 0 288 367 73800292 73800213 1.970000e-28 137.0
32 TraesCS4D01G365700 chr5B 91.579 95 7 1 288 382 33626258 33626351 3.290000e-26 130.0
33 TraesCS4D01G365700 chr3B 88.571 105 6 5 288 392 99666533 99666435 5.510000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G365700 chr4D 509648977 509653036 4059 False 7498.0 7498 100.0000 1 4060 1 chr4D.!!$F1 4059
1 TraesCS4D01G365700 chr5A 698501837 698504361 2524 False 1414.5 2675 87.9655 6 3082 2 chr5A.!!$F1 3076
2 TraesCS4D01G365700 chr5A 45446685 45447601 916 True 1133.0 1133 88.9370 3140 4060 1 chr5A.!!$R1 920
3 TraesCS4D01G365700 chr4B 657182369 657184587 2218 True 1348.1 2612 92.6325 601 3082 2 chr4B.!!$R2 2481
4 TraesCS4D01G365700 chr6B 408676396 408677314 918 True 1589.0 1589 97.8280 3140 4060 1 chr6B.!!$R1 920
5 TraesCS4D01G365700 chr4A 706099827 706100748 921 False 1319.0 1319 92.5410 3141 4060 1 chr4A.!!$F3 919
6 TraesCS4D01G365700 chr4A 705963503 705964424 921 False 1303.0 1303 92.2160 3141 4060 1 chr4A.!!$F2 919
7 TraesCS4D01G365700 chr4A 705910333 705911250 917 False 1293.0 1293 92.1080 3141 4060 1 chr4A.!!$F1 919
8 TraesCS4D01G365700 chr4A 707472351 707473253 902 True 1258.0 1258 91.6760 3140 4060 1 chr4A.!!$R3 920
9 TraesCS4D01G365700 chr4A 45151708 45152613 905 True 1096.0 1096 88.4990 3140 4049 1 chr4A.!!$R1 909
10 TraesCS4D01G365700 chrUn 343524175 343525056 881 False 1288.0 1288 92.9940 3141 4024 1 chrUn.!!$F1 883
11 TraesCS4D01G365700 chr1A 516049762 516050679 917 True 1149.0 1149 89.2740 3140 4060 1 chr1A.!!$R1 920
12 TraesCS4D01G365700 chr7A 712968246 712969062 816 True 259.0 259 72.8690 3168 3986 1 chr7A.!!$R1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 660 0.031994 TTGAAAGCTTCGGCCTTTGC 59.968 50.0 0.00 1.37 43.01 3.68 F
1419 1467 0.252103 TCAAGGTACCCTCCTCGCTT 60.252 55.0 8.74 0.00 36.74 4.68 F
1939 2019 0.388649 AGTGCTTCTACGTTCGCTGG 60.389 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2230 0.107945 GATGGCTTCGAGTTCTGCCT 60.108 55.0 13.58 3.58 45.11 4.75 R
2306 2396 0.179150 GTGCACAAAAGCGGACACAA 60.179 50.0 13.17 0.00 37.31 3.33 R
3868 3995 0.990374 ACTCAGCCAAGCCATCTTCT 59.010 50.0 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 32 4.790718 AGTTGACCTTTTTACCTGTCCT 57.209 40.909 0.00 0.00 0.00 3.85
61 66 4.798882 AGGTGGAGATAACAGGTAGAGAG 58.201 47.826 0.00 0.00 0.00 3.20
70 75 7.514721 AGATAACAGGTAGAGAGAAGTAGGAG 58.485 42.308 0.00 0.00 0.00 3.69
74 79 7.454553 ACAGGTAGAGAGAAGTAGGAGATTA 57.545 40.000 0.00 0.00 0.00 1.75
76 81 7.996644 ACAGGTAGAGAGAAGTAGGAGATTAAG 59.003 40.741 0.00 0.00 0.00 1.85
117 122 5.996669 TGTATGTGTGATGATCAGCATTC 57.003 39.130 17.94 13.23 37.34 2.67
128 133 8.739039 GTGATGATCAGCATTCTATCTACTACT 58.261 37.037 17.94 0.00 37.34 2.57
129 134 8.955388 TGATGATCAGCATTCTATCTACTACTC 58.045 37.037 10.16 0.00 37.34 2.59
130 135 7.695480 TGATCAGCATTCTATCTACTACTCC 57.305 40.000 0.00 0.00 0.00 3.85
131 136 6.661377 TGATCAGCATTCTATCTACTACTCCC 59.339 42.308 0.00 0.00 0.00 4.30
132 137 6.207509 TCAGCATTCTATCTACTACTCCCT 57.792 41.667 0.00 0.00 0.00 4.20
133 138 6.242396 TCAGCATTCTATCTACTACTCCCTC 58.758 44.000 0.00 0.00 0.00 4.30
134 139 5.417580 CAGCATTCTATCTACTACTCCCTCC 59.582 48.000 0.00 0.00 0.00 4.30
135 140 4.396790 GCATTCTATCTACTACTCCCTCCG 59.603 50.000 0.00 0.00 0.00 4.63
136 141 5.562635 CATTCTATCTACTACTCCCTCCGT 58.437 45.833 0.00 0.00 0.00 4.69
137 142 5.643421 TTCTATCTACTACTCCCTCCGTT 57.357 43.478 0.00 0.00 0.00 4.44
138 143 5.226194 TCTATCTACTACTCCCTCCGTTC 57.774 47.826 0.00 0.00 0.00 3.95
139 144 2.725221 TCTACTACTCCCTCCGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
140 145 2.203584 TCTACTACTCCCTCCGTTCCT 58.796 52.381 0.00 0.00 0.00 3.36
141 146 3.387962 TCTACTACTCCCTCCGTTCCTA 58.612 50.000 0.00 0.00 0.00 2.94
142 147 3.782523 TCTACTACTCCCTCCGTTCCTAA 59.217 47.826 0.00 0.00 0.00 2.69
143 148 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
144 149 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
145 150 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
146 151 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
147 152 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
148 153 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
149 154 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
150 155 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
151 156 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
152 157 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
153 158 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
154 159 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
155 160 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
156 161 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
157 162 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
158 163 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
159 164 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
160 165 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
161 166 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
162 167 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
163 168 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
164 169 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
166 171 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
167 172 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
168 173 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
169 174 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
170 175 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
171 176 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
172 177 7.523293 TGTCTTTCTAGGCATTTCAAATGAA 57.477 32.000 14.65 0.00 29.10 2.57
173 178 8.125978 TGTCTTTCTAGGCATTTCAAATGAAT 57.874 30.769 14.65 3.70 29.10 2.57
174 179 9.241919 TGTCTTTCTAGGCATTTCAAATGAATA 57.758 29.630 14.65 4.67 29.10 1.75
179 184 8.750515 TCTAGGCATTTCAAATGAATATCACA 57.249 30.769 14.65 0.00 33.54 3.58
180 185 9.358406 TCTAGGCATTTCAAATGAATATCACAT 57.642 29.630 14.65 0.00 33.54 3.21
183 188 8.077991 AGGCATTTCAAATGAATATCACATACG 58.922 33.333 14.65 0.00 33.54 3.06
184 189 7.326789 GGCATTTCAAATGAATATCACATACGG 59.673 37.037 14.65 0.00 33.54 4.02
185 190 8.075574 GCATTTCAAATGAATATCACATACGGA 58.924 33.333 14.65 0.00 33.54 4.69
188 193 9.119418 TTTCAAATGAATATCACATACGGATGT 57.881 29.630 7.68 7.68 39.20 3.06
189 194 9.771534 TTCAAATGAATATCACATACGGATGTA 57.228 29.630 14.23 0.00 44.82 2.29
190 195 9.942850 TCAAATGAATATCACATACGGATGTAT 57.057 29.630 14.23 10.02 44.82 2.29
231 236 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
232 237 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
233 238 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
234 239 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
235 240 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
236 241 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
237 242 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
238 243 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
239 244 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
240 245 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
241 246 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
242 247 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
243 248 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
244 249 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
245 250 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
246 251 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
247 252 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
248 253 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
249 254 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
250 255 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
251 256 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
252 257 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
253 258 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
254 259 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
255 260 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
256 261 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
257 262 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
258 263 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
259 264 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
260 265 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
261 266 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
262 267 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
263 268 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
264 269 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
265 270 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
266 271 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
267 272 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
268 273 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
269 274 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
270 275 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
271 276 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
272 277 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
273 278 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
275 280 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
276 281 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
277 282 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
278 283 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
279 284 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
280 285 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
281 286 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
282 287 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
283 288 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
284 289 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
285 290 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
286 291 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
287 292 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
288 293 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
289 294 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
290 295 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
291 296 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
292 297 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
293 298 1.569548 AGGAACGGAGGGAGTAGATGA 59.430 52.381 0.00 0.00 0.00 2.92
294 299 1.682323 GGAACGGAGGGAGTAGATGAC 59.318 57.143 0.00 0.00 0.00 3.06
295 300 2.657143 GAACGGAGGGAGTAGATGACT 58.343 52.381 0.00 0.00 42.90 3.41
311 316 9.080097 AGTAGATGACTCAACTTTGTACTAACT 57.920 33.333 0.00 0.00 29.95 2.24
312 317 9.694137 GTAGATGACTCAACTTTGTACTAACTT 57.306 33.333 0.00 0.00 0.00 2.66
351 356 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
352 357 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
353 358 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
354 359 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
355 360 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
356 361 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
357 362 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
358 363 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
359 364 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
360 365 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
361 366 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
362 367 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
363 368 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
364 369 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
365 370 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
366 371 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
367 372 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
368 373 1.553706 TGGAACGGAGGGAGTACTTC 58.446 55.000 0.00 0.00 0.00 3.01
369 374 1.203087 TGGAACGGAGGGAGTACTTCA 60.203 52.381 2.92 0.00 0.00 3.02
370 375 2.108970 GGAACGGAGGGAGTACTTCAT 58.891 52.381 2.92 0.00 0.00 2.57
371 376 3.294214 GGAACGGAGGGAGTACTTCATA 58.706 50.000 2.92 0.00 0.00 2.15
372 377 3.896272 GGAACGGAGGGAGTACTTCATAT 59.104 47.826 2.92 0.00 0.00 1.78
373 378 5.075493 GGAACGGAGGGAGTACTTCATATA 58.925 45.833 2.92 0.00 0.00 0.86
374 379 5.715753 GGAACGGAGGGAGTACTTCATATAT 59.284 44.000 2.92 0.00 0.00 0.86
375 380 6.888632 GGAACGGAGGGAGTACTTCATATATA 59.111 42.308 2.92 0.00 0.00 0.86
376 381 7.067251 GGAACGGAGGGAGTACTTCATATATAG 59.933 44.444 2.92 0.00 0.00 1.31
377 382 7.268212 ACGGAGGGAGTACTTCATATATAGA 57.732 40.000 2.92 0.00 0.00 1.98
378 383 7.696981 ACGGAGGGAGTACTTCATATATAGAA 58.303 38.462 2.92 0.00 0.00 2.10
379 384 8.337739 ACGGAGGGAGTACTTCATATATAGAAT 58.662 37.037 2.92 0.00 0.00 2.40
380 385 8.625651 CGGAGGGAGTACTTCATATATAGAATG 58.374 40.741 2.92 0.00 0.00 2.67
381 386 8.417884 GGAGGGAGTACTTCATATATAGAATGC 58.582 40.741 2.92 0.00 0.00 3.56
382 387 8.901472 AGGGAGTACTTCATATATAGAATGCA 57.099 34.615 2.92 0.00 0.00 3.96
383 388 8.976353 AGGGAGTACTTCATATATAGAATGCAG 58.024 37.037 2.92 0.00 0.00 4.41
384 389 8.972127 GGGAGTACTTCATATATAGAATGCAGA 58.028 37.037 2.92 0.00 0.00 4.26
397 402 9.760926 ATATAGAATGCAGATAACAGGTAGAGA 57.239 33.333 0.00 0.00 0.00 3.10
398 403 6.798427 AGAATGCAGATAACAGGTAGAGAA 57.202 37.500 0.00 0.00 0.00 2.87
399 404 7.187824 AGAATGCAGATAACAGGTAGAGAAA 57.812 36.000 0.00 0.00 0.00 2.52
400 405 7.624549 AGAATGCAGATAACAGGTAGAGAAAA 58.375 34.615 0.00 0.00 0.00 2.29
401 406 7.768120 AGAATGCAGATAACAGGTAGAGAAAAG 59.232 37.037 0.00 0.00 0.00 2.27
402 407 6.360370 TGCAGATAACAGGTAGAGAAAAGT 57.640 37.500 0.00 0.00 0.00 2.66
403 408 7.476540 TGCAGATAACAGGTAGAGAAAAGTA 57.523 36.000 0.00 0.00 0.00 2.24
404 409 7.548097 TGCAGATAACAGGTAGAGAAAAGTAG 58.452 38.462 0.00 0.00 0.00 2.57
405 410 7.396339 TGCAGATAACAGGTAGAGAAAAGTAGA 59.604 37.037 0.00 0.00 0.00 2.59
406 411 7.918562 GCAGATAACAGGTAGAGAAAAGTAGAG 59.081 40.741 0.00 0.00 0.00 2.43
407 412 9.179909 CAGATAACAGGTAGAGAAAAGTAGAGA 57.820 37.037 0.00 0.00 0.00 3.10
408 413 9.403583 AGATAACAGGTAGAGAAAAGTAGAGAG 57.596 37.037 0.00 0.00 0.00 3.20
409 414 6.844097 AACAGGTAGAGAAAAGTAGAGAGG 57.156 41.667 0.00 0.00 0.00 3.69
410 415 5.894653 ACAGGTAGAGAAAAGTAGAGAGGT 58.105 41.667 0.00 0.00 0.00 3.85
411 416 7.030234 ACAGGTAGAGAAAAGTAGAGAGGTA 57.970 40.000 0.00 0.00 0.00 3.08
412 417 7.114095 ACAGGTAGAGAAAAGTAGAGAGGTAG 58.886 42.308 0.00 0.00 0.00 3.18
413 418 6.544564 CAGGTAGAGAAAAGTAGAGAGGTAGG 59.455 46.154 0.00 0.00 0.00 3.18
414 419 6.447735 AGGTAGAGAAAAGTAGAGAGGTAGGA 59.552 42.308 0.00 0.00 0.00 2.94
415 420 7.129816 AGGTAGAGAAAAGTAGAGAGGTAGGAT 59.870 40.741 0.00 0.00 0.00 3.24
416 421 7.781219 GGTAGAGAAAAGTAGAGAGGTAGGATT 59.219 40.741 0.00 0.00 0.00 3.01
417 422 9.850198 GTAGAGAAAAGTAGAGAGGTAGGATTA 57.150 37.037 0.00 0.00 0.00 1.75
447 452 7.102346 TCATTTGTTTGTTTGAAATGGTCAGT 58.898 30.769 0.00 0.00 37.57 3.41
448 453 8.253810 TCATTTGTTTGTTTGAAATGGTCAGTA 58.746 29.630 0.00 0.00 37.57 2.74
449 454 8.542132 CATTTGTTTGTTTGAAATGGTCAGTAG 58.458 33.333 0.00 0.00 37.61 2.57
456 461 6.486657 TGTTTGAAATGGTCAGTAGAGGAAAG 59.513 38.462 0.00 0.00 37.61 2.62
460 465 5.930837 AATGGTCAGTAGAGGAAAGAGAG 57.069 43.478 0.00 0.00 0.00 3.20
463 468 4.202684 TGGTCAGTAGAGGAAAGAGAGGAA 60.203 45.833 0.00 0.00 0.00 3.36
472 477 5.011635 AGAGGAAAGAGAGGAAGAGTTGTTC 59.988 44.000 0.00 0.00 0.00 3.18
473 478 3.991121 GGAAAGAGAGGAAGAGTTGTTCG 59.009 47.826 0.00 0.00 0.00 3.95
474 479 2.734276 AGAGAGGAAGAGTTGTTCGC 57.266 50.000 0.00 0.00 0.00 4.70
475 480 1.964223 AGAGAGGAAGAGTTGTTCGCA 59.036 47.619 0.00 0.00 0.00 5.10
476 481 2.062519 GAGAGGAAGAGTTGTTCGCAC 58.937 52.381 0.00 0.00 0.00 5.34
506 511 6.801377 GTCGACTTCTGCAGATATCTTATCTG 59.199 42.308 19.04 16.62 46.12 2.90
509 514 8.293157 CGACTTCTGCAGATATCTTATCTGTTA 58.707 37.037 19.04 12.01 45.38 2.41
510 515 9.973450 GACTTCTGCAGATATCTTATCTGTTAA 57.027 33.333 19.04 13.16 45.38 2.01
517 522 9.322776 GCAGATATCTTATCTGTTAAATTTGCG 57.677 33.333 20.11 0.00 45.38 4.85
537 544 6.457528 TTTGCGATTCAAAATTGTTGGAAACC 60.458 34.615 0.00 0.00 43.08 3.27
559 566 6.591935 ACCTGAATAAGAAGAGTTGTTCACA 58.408 36.000 0.00 0.00 33.94 3.58
560 567 7.054124 ACCTGAATAAGAAGAGTTGTTCACAA 58.946 34.615 0.00 0.00 33.94 3.33
561 568 7.227512 ACCTGAATAAGAAGAGTTGTTCACAAG 59.772 37.037 0.00 0.00 33.94 3.16
562 569 7.227512 CCTGAATAAGAAGAGTTGTTCACAAGT 59.772 37.037 0.00 0.00 41.81 3.16
576 583 9.820229 GTTGTTCACAAGTCGATTTTATAATCA 57.180 29.630 6.70 0.00 37.28 2.57
644 651 7.761651 AGAAGAAACACAAATTGAAAGCTTC 57.238 32.000 0.00 6.20 0.00 3.86
651 658 3.181466 ACAAATTGAAAGCTTCGGCCTTT 60.181 39.130 0.00 0.00 43.01 3.11
652 659 2.730550 ATTGAAAGCTTCGGCCTTTG 57.269 45.000 0.00 0.00 43.01 2.77
653 660 0.031994 TTGAAAGCTTCGGCCTTTGC 59.968 50.000 0.00 1.37 43.01 3.68
663 670 2.118294 GCCTTTGCCTTCCTGGGT 59.882 61.111 0.00 0.00 36.00 4.51
664 671 1.533994 GCCTTTGCCTTCCTGGGTT 60.534 57.895 0.00 0.00 36.00 4.11
665 672 1.121407 GCCTTTGCCTTCCTGGGTTT 61.121 55.000 0.00 0.00 36.00 3.27
666 673 1.825641 GCCTTTGCCTTCCTGGGTTTA 60.826 52.381 0.00 0.00 36.00 2.01
667 674 2.604139 CCTTTGCCTTCCTGGGTTTAA 58.396 47.619 0.00 0.00 36.00 1.52
668 675 2.969262 CCTTTGCCTTCCTGGGTTTAAA 59.031 45.455 0.00 0.00 36.00 1.52
669 676 3.389656 CCTTTGCCTTCCTGGGTTTAAAA 59.610 43.478 0.00 0.00 36.00 1.52
670 677 4.141597 CCTTTGCCTTCCTGGGTTTAAAAA 60.142 41.667 0.00 0.00 36.00 1.94
671 678 4.409718 TTGCCTTCCTGGGTTTAAAAAC 57.590 40.909 0.00 0.00 38.17 2.43
672 679 3.375699 TGCCTTCCTGGGTTTAAAAACA 58.624 40.909 7.80 0.00 40.63 2.83
673 680 3.775316 TGCCTTCCTGGGTTTAAAAACAA 59.225 39.130 7.80 0.00 40.63 2.83
674 681 4.141824 TGCCTTCCTGGGTTTAAAAACAAG 60.142 41.667 7.80 0.00 40.63 3.16
675 682 4.141801 GCCTTCCTGGGTTTAAAAACAAGT 60.142 41.667 7.80 0.00 40.63 3.16
676 683 5.628200 GCCTTCCTGGGTTTAAAAACAAGTT 60.628 40.000 7.80 0.00 40.63 2.66
677 684 5.815222 CCTTCCTGGGTTTAAAAACAAGTTG 59.185 40.000 0.00 0.00 40.63 3.16
678 685 5.346181 TCCTGGGTTTAAAAACAAGTTGG 57.654 39.130 7.96 3.04 40.63 3.77
679 686 4.778427 TCCTGGGTTTAAAAACAAGTTGGT 59.222 37.500 7.96 0.00 40.63 3.67
680 687 5.248705 TCCTGGGTTTAAAAACAAGTTGGTT 59.751 36.000 7.96 3.59 40.63 3.67
681 688 5.352846 CCTGGGTTTAAAAACAAGTTGGTTG 59.647 40.000 6.98 0.00 40.63 3.77
699 706 8.462016 AGTTGGTTGTTTCAGAGATATATTTGC 58.538 33.333 0.00 0.00 0.00 3.68
700 707 7.936496 TGGTTGTTTCAGAGATATATTTGCA 57.064 32.000 0.00 0.00 0.00 4.08
701 708 8.347004 TGGTTGTTTCAGAGATATATTTGCAA 57.653 30.769 0.00 0.00 0.00 4.08
702 709 8.801299 TGGTTGTTTCAGAGATATATTTGCAAA 58.199 29.630 15.44 15.44 0.00 3.68
703 710 9.807649 GGTTGTTTCAGAGATATATTTGCAAAT 57.192 29.630 26.72 26.72 0.00 2.32
736 743 9.671279 TGTGTGATGATCAACATTTTATCTACT 57.329 29.630 9.06 0.00 39.56 2.57
768 775 9.820725 ATCTCTTTTGTTTGTTTGAAATGATCA 57.179 25.926 0.00 0.00 35.85 2.92
769 776 9.304731 TCTCTTTTGTTTGTTTGAAATGATCAG 57.695 29.630 0.09 0.00 39.77 2.90
770 777 8.422973 TCTTTTGTTTGTTTGAAATGATCAGG 57.577 30.769 0.09 0.00 39.77 3.86
771 778 7.495279 TCTTTTGTTTGTTTGAAATGATCAGGG 59.505 33.333 0.09 0.00 39.77 4.45
772 779 5.212532 TGTTTGTTTGAAATGATCAGGGG 57.787 39.130 0.09 0.00 39.77 4.79
773 780 4.898265 TGTTTGTTTGAAATGATCAGGGGA 59.102 37.500 0.09 0.00 39.77 4.81
774 781 5.365025 TGTTTGTTTGAAATGATCAGGGGAA 59.635 36.000 0.09 0.00 39.77 3.97
775 782 6.126940 TGTTTGTTTGAAATGATCAGGGGAAA 60.127 34.615 0.09 0.00 39.77 3.13
776 783 6.491714 TTGTTTGAAATGATCAGGGGAAAA 57.508 33.333 0.09 0.00 39.77 2.29
777 784 6.491714 TGTTTGAAATGATCAGGGGAAAAA 57.508 33.333 0.09 0.00 39.77 1.94
778 785 6.523840 TGTTTGAAATGATCAGGGGAAAAAG 58.476 36.000 0.09 0.00 39.77 2.27
779 786 6.326064 TGTTTGAAATGATCAGGGGAAAAAGA 59.674 34.615 0.09 0.00 39.77 2.52
780 787 6.992664 TTGAAATGATCAGGGGAAAAAGAA 57.007 33.333 0.09 0.00 39.77 2.52
781 788 6.594788 TGAAATGATCAGGGGAAAAAGAAG 57.405 37.500 0.09 0.00 33.04 2.85
782 789 6.314120 TGAAATGATCAGGGGAAAAAGAAGA 58.686 36.000 0.09 0.00 33.04 2.87
783 790 6.782000 TGAAATGATCAGGGGAAAAAGAAGAA 59.218 34.615 0.09 0.00 33.04 2.52
784 791 6.847421 AATGATCAGGGGAAAAAGAAGAAG 57.153 37.500 0.09 0.00 0.00 2.85
785 792 5.582950 TGATCAGGGGAAAAAGAAGAAGA 57.417 39.130 0.00 0.00 0.00 2.87
786 793 6.144845 TGATCAGGGGAAAAAGAAGAAGAT 57.855 37.500 0.00 0.00 0.00 2.40
787 794 5.948162 TGATCAGGGGAAAAAGAAGAAGATG 59.052 40.000 0.00 0.00 0.00 2.90
788 795 4.666512 TCAGGGGAAAAAGAAGAAGATGG 58.333 43.478 0.00 0.00 0.00 3.51
789 796 4.106341 TCAGGGGAAAAAGAAGAAGATGGT 59.894 41.667 0.00 0.00 0.00 3.55
790 797 5.312178 TCAGGGGAAAAAGAAGAAGATGGTA 59.688 40.000 0.00 0.00 0.00 3.25
791 798 6.011628 TCAGGGGAAAAAGAAGAAGATGGTAT 60.012 38.462 0.00 0.00 0.00 2.73
792 799 6.665248 CAGGGGAAAAAGAAGAAGATGGTATT 59.335 38.462 0.00 0.00 0.00 1.89
793 800 7.179160 CAGGGGAAAAAGAAGAAGATGGTATTT 59.821 37.037 0.00 0.00 0.00 1.40
794 801 7.734865 AGGGGAAAAAGAAGAAGATGGTATTTT 59.265 33.333 0.00 0.00 0.00 1.82
795 802 9.031537 GGGGAAAAAGAAGAAGATGGTATTTTA 57.968 33.333 0.00 0.00 0.00 1.52
822 829 9.528018 TCTACTCCATTTGTTTGTTTCAAAATC 57.472 29.630 0.00 0.00 38.11 2.17
823 830 9.311916 CTACTCCATTTGTTTGTTTCAAAATCA 57.688 29.630 0.00 0.00 38.11 2.57
824 831 8.735692 ACTCCATTTGTTTGTTTCAAAATCAT 57.264 26.923 0.00 0.00 38.11 2.45
825 832 9.176460 ACTCCATTTGTTTGTTTCAAAATCATT 57.824 25.926 0.00 0.00 38.11 2.57
826 833 9.440784 CTCCATTTGTTTGTTTCAAAATCATTG 57.559 29.630 0.00 0.00 38.11 2.82
827 834 8.404000 TCCATTTGTTTGTTTCAAAATCATTGG 58.596 29.630 0.00 0.00 38.11 3.16
828 835 8.404000 CCATTTGTTTGTTTCAAAATCATTGGA 58.596 29.630 0.00 0.00 38.11 3.53
829 836 9.784680 CATTTGTTTGTTTCAAAATCATTGGAA 57.215 25.926 0.00 0.00 38.11 3.53
875 882 4.036734 AGTCGACTTTGCAATCATTGTTGT 59.963 37.500 13.58 0.00 0.00 3.32
942 964 6.603940 TTCTGTTTAAAATGGGGAAGATGG 57.396 37.500 0.00 0.00 0.00 3.51
944 966 5.480073 TCTGTTTAAAATGGGGAAGATGGTG 59.520 40.000 0.00 0.00 0.00 4.17
1003 1028 0.867753 CAGCGCTGCCTTCTACTACG 60.868 60.000 26.68 0.00 0.00 3.51
1006 1031 1.817209 GCTGCCTTCTACTACGCCT 59.183 57.895 0.00 0.00 0.00 5.52
1038 1063 1.457455 CAGAGGAGAGGAGAGGGGC 60.457 68.421 0.00 0.00 0.00 5.80
1390 1430 2.350895 CCAATGTGCCCCTCGACA 59.649 61.111 0.00 0.00 0.00 4.35
1407 1447 2.283388 ACCTCCCGCGTCAAGGTA 60.283 61.111 19.14 0.00 41.61 3.08
1408 1448 2.183555 CCTCCCGCGTCAAGGTAC 59.816 66.667 4.92 0.00 0.00 3.34
1419 1467 0.252103 TCAAGGTACCCTCCTCGCTT 60.252 55.000 8.74 0.00 36.74 4.68
1542 1610 6.913873 TTAGTTAACTGAAACACACCAGAC 57.086 37.500 18.56 0.00 34.65 3.51
1565 1633 4.991687 CAGGTTTCAGACTCTCAGTTAACC 59.008 45.833 0.88 0.00 0.00 2.85
1687 1760 2.965831 AGCCGATGAATAGCTGGAGTAA 59.034 45.455 0.00 0.00 34.99 2.24
1710 1783 6.884280 AAAATGACTGTTCCTAACTTCCTG 57.116 37.500 0.00 0.00 0.00 3.86
1760 1833 1.227527 TGGCACACACCTGAACTCG 60.228 57.895 0.00 0.00 0.00 4.18
1775 1848 3.742882 TGAACTCGCTCAAGTTGATTCTG 59.257 43.478 5.91 0.00 39.55 3.02
1845 1922 4.056092 AGCATTAGTTTACCTCTACCGC 57.944 45.455 0.00 0.00 0.00 5.68
1850 1927 0.900421 GTTTACCTCTACCGCCCTGT 59.100 55.000 0.00 0.00 0.00 4.00
1876 1953 0.669318 GGTCGAGTTGCATCGTGGAA 60.669 55.000 9.37 0.00 43.20 3.53
1878 1955 1.324736 GTCGAGTTGCATCGTGGAATC 59.675 52.381 9.37 0.00 43.20 2.52
1879 1956 1.204704 TCGAGTTGCATCGTGGAATCT 59.795 47.619 9.37 0.00 43.20 2.40
1912 1989 5.161358 TGTTGTGAGCTTATTGTACTCTCG 58.839 41.667 0.00 0.00 0.00 4.04
1921 2001 5.115773 GCTTATTGTACTCTCGTGCGATTAG 59.884 44.000 0.00 0.00 32.84 1.73
1935 2015 2.213575 GCGATTAGTGCTTCTACGTTCG 59.786 50.000 0.00 0.00 33.14 3.95
1939 2019 0.388649 AGTGCTTCTACGTTCGCTGG 60.389 55.000 0.00 0.00 0.00 4.85
1976 2056 4.826274 TTGGTTAAGCTAGTGCAGAGAT 57.174 40.909 6.19 0.00 42.74 2.75
2172 2252 2.418746 GGCAGAACTCGAAGCCATCTTA 60.419 50.000 0.00 0.00 46.26 2.10
2239 2319 2.615912 GTCAGCTTGGTCCATAGATTGC 59.384 50.000 0.00 0.00 0.00 3.56
2306 2396 6.597562 TGTTAAGTCACCACTAATTTCCAGT 58.402 36.000 0.00 0.00 30.14 4.00
2448 2538 2.297597 GGCAAGGATCAGATACGCTAGT 59.702 50.000 0.00 0.00 0.00 2.57
2451 2541 4.737946 GCAAGGATCAGATACGCTAGTGTT 60.738 45.833 15.28 2.53 0.00 3.32
2463 2553 3.119291 CGCTAGTGTTATCAAGGCTCTG 58.881 50.000 0.00 0.00 0.00 3.35
2478 2568 0.463833 CTCTGGCCGACAAATACCCC 60.464 60.000 0.00 0.00 0.00 4.95
2479 2569 1.202099 TCTGGCCGACAAATACCCCA 61.202 55.000 0.00 0.00 0.00 4.96
2496 2586 2.353803 CCCCAACGAGAACCTACTCTTG 60.354 54.545 0.00 0.00 35.06 3.02
2582 2676 1.129624 GTAAATCACAATCGCACCGCA 59.870 47.619 0.00 0.00 0.00 5.69
2583 2677 0.810648 AAATCACAATCGCACCGCAT 59.189 45.000 0.00 0.00 0.00 4.73
2601 2695 4.408694 CGCATATGTGGTATATCGTTCGA 58.591 43.478 8.46 0.00 0.00 3.71
2608 2702 7.582435 ATGTGGTATATCGTTCGATTCAATC 57.418 36.000 12.77 0.00 0.00 2.67
2611 2705 6.089551 GTGGTATATCGTTCGATTCAATCCTG 59.910 42.308 12.77 0.00 0.00 3.86
2620 2714 2.033801 CGATTCAATCCTGCAATGGACC 59.966 50.000 0.00 0.00 39.17 4.46
2624 2722 0.680921 AATCCTGCAATGGACCGGTG 60.681 55.000 14.63 0.00 39.17 4.94
2633 2731 2.047179 GGACCGGTGAGTTGAGGC 60.047 66.667 14.63 0.00 0.00 4.70
2868 2975 1.480789 TCAAGCAGCATGATGCCATT 58.519 45.000 30.96 17.76 46.52 3.16
2869 2976 1.136110 TCAAGCAGCATGATGCCATTG 59.864 47.619 30.96 27.09 46.52 2.82
2870 2977 0.179084 AAGCAGCATGATGCCATTGC 60.179 50.000 30.96 18.79 46.52 3.56
2871 2978 1.043116 AGCAGCATGATGCCATTGCT 61.043 50.000 30.96 22.09 46.52 3.91
2872 2979 0.671796 GCAGCATGATGCCATTGCTA 59.328 50.000 25.21 0.00 46.52 3.49
2873 2980 1.272490 GCAGCATGATGCCATTGCTAT 59.728 47.619 25.21 0.00 46.52 2.97
2896 3003 2.611473 GCCATCATCATACCACTCCTCG 60.611 54.545 0.00 0.00 0.00 4.63
2904 3011 1.595993 TACCACTCCTCGAGCACTGC 61.596 60.000 6.99 0.00 32.04 4.40
2944 3051 9.196552 GCTTTGATTAGTTTAGTTTTGCAATCT 57.803 29.630 0.00 4.91 0.00 2.40
2959 3066 5.781210 TGCAATCTGTATTTGTTTCCACA 57.219 34.783 0.00 0.00 0.00 4.17
2974 3081 5.695816 TGTTTCCACAAGATTTTATGCTTGC 59.304 36.000 0.00 0.00 43.99 4.01
2976 3083 5.063180 TCCACAAGATTTTATGCTTGCTG 57.937 39.130 0.00 0.00 43.99 4.41
2981 3088 5.009911 ACAAGATTTTATGCTTGCTGTGTCA 59.990 36.000 0.00 0.00 43.99 3.58
2983 3090 5.888105 AGATTTTATGCTTGCTGTGTCATC 58.112 37.500 0.00 0.00 0.00 2.92
3000 3109 6.260050 TGTGTCATCTTTAGAAAACTGTGGTC 59.740 38.462 0.00 0.00 0.00 4.02
3009 3118 0.176219 AAACTGTGGTCGGTTCGTCA 59.824 50.000 0.00 0.00 41.66 4.35
3057 3169 5.067283 CGGGGTAATAATTTGCTAAACTGCT 59.933 40.000 0.00 0.00 0.00 4.24
3061 3173 8.869897 GGGTAATAATTTGCTAAACTGCTTTTC 58.130 33.333 0.00 0.00 0.00 2.29
3067 3179 8.803201 AATTTGCTAAACTGCTTTTCTAAGAC 57.197 30.769 0.00 0.00 32.92 3.01
3068 3180 6.935741 TTGCTAAACTGCTTTTCTAAGACA 57.064 33.333 0.00 0.00 32.92 3.41
3070 3182 6.725246 TGCTAAACTGCTTTTCTAAGACAAC 58.275 36.000 0.00 0.00 32.92 3.32
3071 3183 6.542370 TGCTAAACTGCTTTTCTAAGACAACT 59.458 34.615 0.00 0.00 32.92 3.16
3082 3194 9.252962 CTTTTCTAAGACAACTTTTGCATTCAT 57.747 29.630 0.00 0.00 37.53 2.57
3083 3195 9.598517 TTTTCTAAGACAACTTTTGCATTCATT 57.401 25.926 0.00 0.00 37.53 2.57
3091 3203 9.745323 GACAACTTTTGCATTCATTAATTAAGC 57.255 29.630 3.94 2.11 0.00 3.09
3092 3204 9.270640 ACAACTTTTGCATTCATTAATTAAGCA 57.729 25.926 3.94 4.69 0.00 3.91
3093 3205 9.532697 CAACTTTTGCATTCATTAATTAAGCAC 57.467 29.630 8.19 0.00 0.00 4.40
3094 3206 7.952339 ACTTTTGCATTCATTAATTAAGCACG 58.048 30.769 8.19 4.31 0.00 5.34
3095 3207 7.812191 ACTTTTGCATTCATTAATTAAGCACGA 59.188 29.630 8.19 0.00 0.00 4.35
3096 3208 7.504922 TTTGCATTCATTAATTAAGCACGAC 57.495 32.000 8.19 0.00 0.00 4.34
3097 3209 6.188400 TGCATTCATTAATTAAGCACGACA 57.812 33.333 3.94 0.00 0.00 4.35
3098 3210 6.794374 TGCATTCATTAATTAAGCACGACAT 58.206 32.000 3.94 0.00 0.00 3.06
3099 3211 7.924940 TGCATTCATTAATTAAGCACGACATA 58.075 30.769 3.94 0.00 0.00 2.29
3100 3212 8.401709 TGCATTCATTAATTAAGCACGACATAA 58.598 29.630 3.94 0.00 0.00 1.90
3101 3213 8.895845 GCATTCATTAATTAAGCACGACATAAG 58.104 33.333 3.94 0.00 0.00 1.73
3110 3222 8.887036 ATTAAGCACGACATAAGATGTAATGA 57.113 30.769 0.00 0.00 45.03 2.57
3111 3223 8.710835 TTAAGCACGACATAAGATGTAATGAA 57.289 30.769 0.00 0.00 45.03 2.57
3112 3224 7.609760 AAGCACGACATAAGATGTAATGAAA 57.390 32.000 0.00 0.00 45.03 2.69
3113 3225 7.239166 AGCACGACATAAGATGTAATGAAAG 57.761 36.000 0.00 0.00 45.03 2.62
3114 3226 7.041721 AGCACGACATAAGATGTAATGAAAGA 58.958 34.615 0.00 0.00 45.03 2.52
3115 3227 7.010552 AGCACGACATAAGATGTAATGAAAGAC 59.989 37.037 0.00 0.00 45.03 3.01
3116 3228 7.201522 GCACGACATAAGATGTAATGAAAGACA 60.202 37.037 0.00 0.00 45.03 3.41
3117 3229 8.110612 CACGACATAAGATGTAATGAAAGACAC 58.889 37.037 0.00 0.00 45.03 3.67
3118 3230 7.817478 ACGACATAAGATGTAATGAAAGACACA 59.183 33.333 0.00 0.00 45.03 3.72
3119 3231 8.110612 CGACATAAGATGTAATGAAAGACACAC 58.889 37.037 0.00 0.00 45.03 3.82
3120 3232 8.268850 ACATAAGATGTAATGAAAGACACACC 57.731 34.615 0.00 0.00 42.78 4.16
3121 3233 7.882791 ACATAAGATGTAATGAAAGACACACCA 59.117 33.333 0.00 0.00 42.78 4.17
3122 3234 8.896744 CATAAGATGTAATGAAAGACACACCAT 58.103 33.333 0.00 0.00 0.00 3.55
3123 3235 7.765695 AAGATGTAATGAAAGACACACCATT 57.234 32.000 0.00 0.00 34.16 3.16
3124 3236 8.862325 AAGATGTAATGAAAGACACACCATTA 57.138 30.769 0.00 0.00 32.28 1.90
3125 3237 8.862325 AGATGTAATGAAAGACACACCATTAA 57.138 30.769 0.00 0.00 34.50 1.40
3126 3238 9.466497 AGATGTAATGAAAGACACACCATTAAT 57.534 29.630 0.00 0.00 34.50 1.40
3131 3243 8.986477 AATGAAAGACACACCATTAATTAAGC 57.014 30.769 3.94 0.00 0.00 3.09
3132 3244 7.517614 TGAAAGACACACCATTAATTAAGCA 57.482 32.000 3.94 0.00 0.00 3.91
3133 3245 7.367285 TGAAAGACACACCATTAATTAAGCAC 58.633 34.615 3.94 0.00 0.00 4.40
3134 3246 5.545658 AGACACACCATTAATTAAGCACG 57.454 39.130 3.94 0.00 0.00 5.34
3135 3247 5.242434 AGACACACCATTAATTAAGCACGA 58.758 37.500 3.94 0.00 0.00 4.35
3136 3248 5.121768 AGACACACCATTAATTAAGCACGAC 59.878 40.000 3.94 0.00 0.00 4.34
3137 3249 4.757657 ACACACCATTAATTAAGCACGACA 59.242 37.500 3.94 0.00 0.00 4.35
3138 3250 5.414454 ACACACCATTAATTAAGCACGACAT 59.586 36.000 3.94 0.00 0.00 3.06
3208 3320 3.366273 GGTATGTGTGACGTCGGTAAAGA 60.366 47.826 11.62 0.00 0.00 2.52
3209 3321 2.410785 TGTGTGACGTCGGTAAAGAG 57.589 50.000 11.62 0.00 0.00 2.85
3412 3534 8.307483 ACCTATGATATCTCACTTGTTATTCGG 58.693 37.037 3.98 0.00 33.22 4.30
3806 3929 1.810151 GTTTTCCGCTTACCTGCATCA 59.190 47.619 0.00 0.00 0.00 3.07
3840 3963 6.317140 TGATCTTACCAAATTGATGAGACAGC 59.683 38.462 0.00 0.00 0.00 4.40
3855 3978 1.004277 GACAGCATTGGTGGGGAGTTA 59.996 52.381 19.20 0.00 35.13 2.24
3868 3995 5.834742 GGTGGGGAGTTAAAAGAGGTAAAAA 59.165 40.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.826208 ACAGGTAAAAAGGTCAACTTACAGG 59.174 40.000 0.00 0.00 38.85 4.00
1 2 6.017357 GGACAGGTAAAAAGGTCAACTTACAG 60.017 42.308 0.00 0.00 38.85 2.74
2 3 5.824097 GGACAGGTAAAAAGGTCAACTTACA 59.176 40.000 0.00 0.00 38.85 2.41
3 4 6.060136 AGGACAGGTAAAAAGGTCAACTTAC 58.940 40.000 0.00 0.00 38.85 2.34
4 5 6.256643 AGGACAGGTAAAAAGGTCAACTTA 57.743 37.500 0.00 0.00 38.85 2.24
19 20 1.222567 AAACAGGGACAAGGACAGGT 58.777 50.000 0.00 0.00 0.00 4.00
27 32 2.696775 TCTCCACCTAAACAGGGACAA 58.303 47.619 0.00 0.00 0.00 3.18
84 89 9.518906 GATCATCACACATACAATATTTGCAAA 57.481 29.630 15.44 15.44 0.00 3.68
90 95 8.631480 ATGCTGATCATCACACATACAATATT 57.369 30.769 0.42 0.00 0.00 1.28
96 101 7.818446 AGATAGAATGCTGATCATCACACATAC 59.182 37.037 0.42 0.00 33.40 2.39
117 122 4.041938 AGGAACGGAGGGAGTAGTAGATAG 59.958 50.000 0.00 0.00 0.00 2.08
128 133 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
129 134 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
130 135 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
131 136 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
132 137 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
133 138 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
134 139 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
135 140 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
136 141 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
137 142 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
138 143 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
140 145 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
141 146 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
142 147 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
143 148 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
144 149 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
145 150 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
146 151 7.596494 TCATTTGAAATGCCTAGAAAGACAAG 58.404 34.615 12.86 0.00 0.00 3.16
147 152 7.523293 TCATTTGAAATGCCTAGAAAGACAA 57.477 32.000 12.86 0.00 0.00 3.18
148 153 7.523293 TTCATTTGAAATGCCTAGAAAGACA 57.477 32.000 12.86 0.00 0.00 3.41
153 158 9.187996 TGTGATATTCATTTGAAATGCCTAGAA 57.812 29.630 12.86 2.59 37.61 2.10
154 159 8.750515 TGTGATATTCATTTGAAATGCCTAGA 57.249 30.769 12.86 0.00 37.61 2.43
157 162 8.077991 CGTATGTGATATTCATTTGAAATGCCT 58.922 33.333 12.86 5.36 37.61 4.75
158 163 7.326789 CCGTATGTGATATTCATTTGAAATGCC 59.673 37.037 12.86 1.28 37.61 4.40
159 164 8.075574 TCCGTATGTGATATTCATTTGAAATGC 58.924 33.333 12.86 0.00 37.61 3.56
162 167 9.119418 ACATCCGTATGTGATATTCATTTGAAA 57.881 29.630 0.00 0.00 44.79 2.69
163 168 8.675705 ACATCCGTATGTGATATTCATTTGAA 57.324 30.769 0.00 0.00 44.79 2.69
164 169 9.942850 ATACATCCGTATGTGATATTCATTTGA 57.057 29.630 3.56 0.00 45.99 2.69
165 170 9.977762 CATACATCCGTATGTGATATTCATTTG 57.022 33.333 3.56 0.00 46.70 2.32
207 212 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
208 213 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
224 229 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
225 230 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
226 231 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
227 232 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
228 233 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
229 234 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
230 235 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
231 236 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
232 237 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
233 238 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
234 239 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
235 240 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
236 241 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
237 242 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
238 243 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
239 244 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
240 245 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
241 246 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
242 247 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
243 248 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
244 249 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
245 250 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
246 251 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
247 252 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
249 254 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
250 255 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
251 256 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
252 257 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
253 258 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
254 259 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
255 260 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
256 261 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
257 262 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
258 263 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
259 264 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
260 265 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
261 266 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
262 267 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
263 268 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
264 269 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
265 270 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
266 271 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
267 272 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
268 273 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
269 274 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
270 275 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
271 276 3.203710 TCATCTACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
272 277 2.781757 TCATCTACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
273 278 1.569548 TCATCTACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
274 279 1.682323 GTCATCTACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
275 280 2.657143 AGTCATCTACTCCCTCCGTTC 58.343 52.381 0.00 0.00 30.33 3.95
276 281 2.830651 AGTCATCTACTCCCTCCGTT 57.169 50.000 0.00 0.00 30.33 4.44
285 290 9.080097 AGTTAGTACAAAGTTGAGTCATCTACT 57.920 33.333 4.14 6.82 42.32 2.57
286 291 9.694137 AAGTTAGTACAAAGTTGAGTCATCTAC 57.306 33.333 4.14 0.00 0.00 2.59
325 330 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
326 331 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
327 332 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
328 333 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
329 334 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
330 335 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
331 336 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
332 337 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
333 338 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
334 339 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
335 340 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
336 341 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
337 342 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
338 343 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
339 344 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
340 345 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
341 346 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
342 347 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
343 348 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
344 349 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
345 350 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
346 351 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
347 352 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
348 353 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
349 354 1.203087 TGAAGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
350 355 1.553706 TGAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
351 356 6.837471 ATATATGAAGTACTCCCTCCGTTC 57.163 41.667 0.00 0.00 0.00 3.95
352 357 7.696981 TCTATATATGAAGTACTCCCTCCGTT 58.303 38.462 0.00 0.00 0.00 4.44
353 358 7.268212 TCTATATATGAAGTACTCCCTCCGT 57.732 40.000 0.00 0.00 0.00 4.69
354 359 8.625651 CATTCTATATATGAAGTACTCCCTCCG 58.374 40.741 0.00 0.00 0.00 4.63
355 360 8.417884 GCATTCTATATATGAAGTACTCCCTCC 58.582 40.741 0.00 0.00 0.00 4.30
356 361 8.972127 TGCATTCTATATATGAAGTACTCCCTC 58.028 37.037 0.00 0.00 0.00 4.30
357 362 8.901472 TGCATTCTATATATGAAGTACTCCCT 57.099 34.615 0.00 0.00 0.00 4.20
358 363 8.972127 TCTGCATTCTATATATGAAGTACTCCC 58.028 37.037 0.00 0.00 31.65 4.30
371 376 9.760926 TCTCTACCTGTTATCTGCATTCTATAT 57.239 33.333 0.00 0.00 0.00 0.86
372 377 9.588096 TTCTCTACCTGTTATCTGCATTCTATA 57.412 33.333 0.00 0.00 0.00 1.31
373 378 8.484214 TTCTCTACCTGTTATCTGCATTCTAT 57.516 34.615 0.00 0.00 0.00 1.98
374 379 7.898014 TTCTCTACCTGTTATCTGCATTCTA 57.102 36.000 0.00 0.00 0.00 2.10
375 380 6.798427 TTCTCTACCTGTTATCTGCATTCT 57.202 37.500 0.00 0.00 0.00 2.40
376 381 7.550906 ACTTTTCTCTACCTGTTATCTGCATTC 59.449 37.037 0.00 0.00 0.00 2.67
377 382 7.398024 ACTTTTCTCTACCTGTTATCTGCATT 58.602 34.615 0.00 0.00 0.00 3.56
378 383 6.951971 ACTTTTCTCTACCTGTTATCTGCAT 58.048 36.000 0.00 0.00 0.00 3.96
379 384 6.360370 ACTTTTCTCTACCTGTTATCTGCA 57.640 37.500 0.00 0.00 0.00 4.41
380 385 7.773149 TCTACTTTTCTCTACCTGTTATCTGC 58.227 38.462 0.00 0.00 0.00 4.26
381 386 9.179909 TCTCTACTTTTCTCTACCTGTTATCTG 57.820 37.037 0.00 0.00 0.00 2.90
382 387 9.403583 CTCTCTACTTTTCTCTACCTGTTATCT 57.596 37.037 0.00 0.00 0.00 1.98
383 388 8.626526 CCTCTCTACTTTTCTCTACCTGTTATC 58.373 40.741 0.00 0.00 0.00 1.75
384 389 8.117312 ACCTCTCTACTTTTCTCTACCTGTTAT 58.883 37.037 0.00 0.00 0.00 1.89
385 390 7.468496 ACCTCTCTACTTTTCTCTACCTGTTA 58.532 38.462 0.00 0.00 0.00 2.41
386 391 6.316513 ACCTCTCTACTTTTCTCTACCTGTT 58.683 40.000 0.00 0.00 0.00 3.16
387 392 5.894653 ACCTCTCTACTTTTCTCTACCTGT 58.105 41.667 0.00 0.00 0.00 4.00
388 393 6.544564 CCTACCTCTCTACTTTTCTCTACCTG 59.455 46.154 0.00 0.00 0.00 4.00
389 394 6.447735 TCCTACCTCTCTACTTTTCTCTACCT 59.552 42.308 0.00 0.00 0.00 3.08
390 395 6.661777 TCCTACCTCTCTACTTTTCTCTACC 58.338 44.000 0.00 0.00 0.00 3.18
391 396 8.756486 AATCCTACCTCTCTACTTTTCTCTAC 57.244 38.462 0.00 0.00 0.00 2.59
403 408 9.836179 ACAAATGAGATATAATCCTACCTCTCT 57.164 33.333 0.00 0.00 32.33 3.10
418 423 9.474920 GACCATTTCAAACAAACAAATGAGATA 57.525 29.630 5.40 0.00 39.06 1.98
435 440 5.780282 TCTCTTTCCTCTACTGACCATTTCA 59.220 40.000 0.00 0.00 0.00 2.69
442 447 5.258051 TCTTCCTCTCTTTCCTCTACTGAC 58.742 45.833 0.00 0.00 0.00 3.51
447 452 5.646215 ACAACTCTTCCTCTCTTTCCTCTA 58.354 41.667 0.00 0.00 0.00 2.43
448 453 4.488770 ACAACTCTTCCTCTCTTTCCTCT 58.511 43.478 0.00 0.00 0.00 3.69
449 454 4.882842 ACAACTCTTCCTCTCTTTCCTC 57.117 45.455 0.00 0.00 0.00 3.71
456 461 2.062519 GTGCGAACAACTCTTCCTCTC 58.937 52.381 0.00 0.00 0.00 3.20
460 465 1.204312 GCGTGCGAACAACTCTTCC 59.796 57.895 0.00 0.00 0.00 3.46
463 468 0.810031 ACTTGCGTGCGAACAACTCT 60.810 50.000 0.00 0.00 0.00 3.24
472 477 2.016704 AGAAGTCGACTTGCGTGCG 61.017 57.895 34.23 0.00 41.80 5.34
473 478 1.488957 CAGAAGTCGACTTGCGTGC 59.511 57.895 34.23 19.23 41.80 5.34
474 479 1.215014 TGCAGAAGTCGACTTGCGTG 61.215 55.000 34.23 25.88 41.80 5.34
475 480 0.941463 CTGCAGAAGTCGACTTGCGT 60.941 55.000 34.23 16.06 41.80 5.24
476 481 0.664466 TCTGCAGAAGTCGACTTGCG 60.664 55.000 34.23 24.94 42.69 4.85
506 511 8.890951 CCAACAATTTTGAATCGCAAATTTAAC 58.109 29.630 0.00 0.00 45.30 2.01
509 514 7.256756 TCCAACAATTTTGAATCGCAAATTT 57.743 28.000 0.00 0.00 45.30 1.82
510 515 6.857777 TCCAACAATTTTGAATCGCAAATT 57.142 29.167 0.00 0.00 45.30 1.82
516 521 5.982516 TCAGGTTTCCAACAATTTTGAATCG 59.017 36.000 0.00 0.00 0.00 3.34
517 522 7.784633 TTCAGGTTTCCAACAATTTTGAATC 57.215 32.000 0.00 0.00 0.00 2.52
518 523 9.844257 TTATTCAGGTTTCCAACAATTTTGAAT 57.156 25.926 0.00 0.00 0.00 2.57
537 544 8.147642 ACTTGTGAACAACTCTTCTTATTCAG 57.852 34.615 0.00 0.00 0.00 3.02
542 549 5.898174 TCGACTTGTGAACAACTCTTCTTA 58.102 37.500 0.00 0.00 0.00 2.10
629 636 1.963515 AGGCCGAAGCTTTCAATTTGT 59.036 42.857 0.00 0.00 39.73 2.83
651 658 3.375699 TGTTTTTAAACCCAGGAAGGCA 58.624 40.909 3.13 0.00 38.11 4.75
652 659 4.141801 ACTTGTTTTTAAACCCAGGAAGGC 60.142 41.667 3.13 0.00 38.11 4.35
653 660 5.607939 ACTTGTTTTTAAACCCAGGAAGG 57.392 39.130 3.13 0.00 38.11 3.46
654 661 5.815222 CCAACTTGTTTTTAAACCCAGGAAG 59.185 40.000 3.13 2.83 38.11 3.46
655 662 5.248705 ACCAACTTGTTTTTAAACCCAGGAA 59.751 36.000 3.13 0.00 38.11 3.36
656 663 4.778427 ACCAACTTGTTTTTAAACCCAGGA 59.222 37.500 3.13 0.00 38.11 3.86
657 664 5.092554 ACCAACTTGTTTTTAAACCCAGG 57.907 39.130 3.13 0.00 38.11 4.45
658 665 5.935206 ACAACCAACTTGTTTTTAAACCCAG 59.065 36.000 3.13 2.46 40.45 4.45
659 666 5.866207 ACAACCAACTTGTTTTTAAACCCA 58.134 33.333 3.13 0.00 40.45 4.51
670 677 9.520515 AATATATCTCTGAAACAACCAACTTGT 57.479 29.630 0.00 0.00 45.68 3.16
673 680 8.462016 GCAAATATATCTCTGAAACAACCAACT 58.538 33.333 0.00 0.00 0.00 3.16
674 681 8.243426 TGCAAATATATCTCTGAAACAACCAAC 58.757 33.333 0.00 0.00 0.00 3.77
675 682 8.347004 TGCAAATATATCTCTGAAACAACCAA 57.653 30.769 0.00 0.00 0.00 3.67
676 683 7.936496 TGCAAATATATCTCTGAAACAACCA 57.064 32.000 0.00 0.00 0.00 3.67
677 684 9.807649 ATTTGCAAATATATCTCTGAAACAACC 57.192 29.630 22.95 0.00 0.00 3.77
710 717 9.671279 AGTAGATAAAATGTTGATCATCACACA 57.329 29.630 8.62 4.55 35.48 3.72
742 749 9.820725 TGATCATTTCAAACAAACAAAAGAGAT 57.179 25.926 0.00 0.00 0.00 2.75
743 750 9.304731 CTGATCATTTCAAACAAACAAAAGAGA 57.695 29.630 0.00 0.00 32.78 3.10
744 751 8.545420 CCTGATCATTTCAAACAAACAAAAGAG 58.455 33.333 0.00 0.00 32.78 2.85
745 752 7.495279 CCCTGATCATTTCAAACAAACAAAAGA 59.505 33.333 0.00 0.00 32.78 2.52
746 753 7.254863 CCCCTGATCATTTCAAACAAACAAAAG 60.255 37.037 0.00 0.00 32.78 2.27
747 754 6.541641 CCCCTGATCATTTCAAACAAACAAAA 59.458 34.615 0.00 0.00 32.78 2.44
748 755 6.054295 CCCCTGATCATTTCAAACAAACAAA 58.946 36.000 0.00 0.00 32.78 2.83
749 756 5.365025 TCCCCTGATCATTTCAAACAAACAA 59.635 36.000 0.00 0.00 32.78 2.83
750 757 4.898265 TCCCCTGATCATTTCAAACAAACA 59.102 37.500 0.00 0.00 32.78 2.83
751 758 5.467035 TCCCCTGATCATTTCAAACAAAC 57.533 39.130 0.00 0.00 32.78 2.93
752 759 6.491714 TTTCCCCTGATCATTTCAAACAAA 57.508 33.333 0.00 0.00 32.78 2.83
753 760 6.491714 TTTTCCCCTGATCATTTCAAACAA 57.508 33.333 0.00 0.00 32.78 2.83
754 761 6.326064 TCTTTTTCCCCTGATCATTTCAAACA 59.674 34.615 0.00 0.00 32.78 2.83
755 762 6.758254 TCTTTTTCCCCTGATCATTTCAAAC 58.242 36.000 0.00 0.00 32.78 2.93
756 763 6.992664 TCTTTTTCCCCTGATCATTTCAAA 57.007 33.333 0.00 0.00 32.78 2.69
757 764 6.782000 TCTTCTTTTTCCCCTGATCATTTCAA 59.218 34.615 0.00 0.00 32.78 2.69
758 765 6.314120 TCTTCTTTTTCCCCTGATCATTTCA 58.686 36.000 0.00 0.00 0.00 2.69
759 766 6.840780 TCTTCTTTTTCCCCTGATCATTTC 57.159 37.500 0.00 0.00 0.00 2.17
760 767 7.012607 TCTTCTTCTTTTTCCCCTGATCATTT 58.987 34.615 0.00 0.00 0.00 2.32
761 768 6.555711 TCTTCTTCTTTTTCCCCTGATCATT 58.444 36.000 0.00 0.00 0.00 2.57
762 769 6.144845 TCTTCTTCTTTTTCCCCTGATCAT 57.855 37.500 0.00 0.00 0.00 2.45
763 770 5.582950 TCTTCTTCTTTTTCCCCTGATCA 57.417 39.130 0.00 0.00 0.00 2.92
764 771 5.359292 CCATCTTCTTCTTTTTCCCCTGATC 59.641 44.000 0.00 0.00 0.00 2.92
765 772 5.222421 ACCATCTTCTTCTTTTTCCCCTGAT 60.222 40.000 0.00 0.00 0.00 2.90
766 773 4.106341 ACCATCTTCTTCTTTTTCCCCTGA 59.894 41.667 0.00 0.00 0.00 3.86
767 774 4.411013 ACCATCTTCTTCTTTTTCCCCTG 58.589 43.478 0.00 0.00 0.00 4.45
768 775 4.749048 ACCATCTTCTTCTTTTTCCCCT 57.251 40.909 0.00 0.00 0.00 4.79
769 776 7.482169 AAATACCATCTTCTTCTTTTTCCCC 57.518 36.000 0.00 0.00 0.00 4.81
796 803 9.528018 GATTTTGAAACAAACAAATGGAGTAGA 57.472 29.630 0.00 0.00 37.15 2.59
797 804 9.311916 TGATTTTGAAACAAACAAATGGAGTAG 57.688 29.630 0.00 0.00 37.15 2.57
798 805 9.829507 ATGATTTTGAAACAAACAAATGGAGTA 57.170 25.926 0.00 0.00 37.15 2.59
799 806 8.735692 ATGATTTTGAAACAAACAAATGGAGT 57.264 26.923 0.00 0.00 37.15 3.85
800 807 9.440784 CAATGATTTTGAAACAAACAAATGGAG 57.559 29.630 0.00 0.00 37.15 3.86
801 808 8.404000 CCAATGATTTTGAAACAAACAAATGGA 58.596 29.630 0.00 0.00 35.87 3.41
802 809 8.404000 TCCAATGATTTTGAAACAAACAAATGG 58.596 29.630 0.00 0.00 37.15 3.16
803 810 9.784680 TTCCAATGATTTTGAAACAAACAAATG 57.215 25.926 0.00 0.00 37.15 2.32
834 841 8.905956 AAGTCGACTTGTGAACAACTCTTGTTT 61.906 37.037 29.24 0.00 43.21 2.83
835 842 7.510060 AAGTCGACTTGTGAACAACTCTTGTT 61.510 38.462 29.24 0.00 44.56 2.83
836 843 6.082956 AAGTCGACTTGTGAACAACTCTTGT 61.083 40.000 29.24 0.00 39.20 3.16
837 844 3.865745 AGTCGACTTGTGAACAACTCTTG 59.134 43.478 13.58 0.00 0.00 3.02
838 845 4.124851 AGTCGACTTGTGAACAACTCTT 57.875 40.909 13.58 0.00 0.00 2.85
839 846 3.802948 AGTCGACTTGTGAACAACTCT 57.197 42.857 13.58 0.00 0.00 3.24
840 847 4.578601 CAAAGTCGACTTGTGAACAACTC 58.421 43.478 30.33 0.00 36.12 3.01
841 848 3.181510 GCAAAGTCGACTTGTGAACAACT 60.182 43.478 30.33 9.47 36.12 3.16
842 849 3.098636 GCAAAGTCGACTTGTGAACAAC 58.901 45.455 30.33 13.12 36.12 3.32
843 850 2.744741 TGCAAAGTCGACTTGTGAACAA 59.255 40.909 30.33 10.19 36.12 2.83
844 851 2.351455 TGCAAAGTCGACTTGTGAACA 58.649 42.857 30.33 19.80 36.12 3.18
845 852 3.398954 TTGCAAAGTCGACTTGTGAAC 57.601 42.857 30.33 17.70 36.12 3.18
846 853 3.625313 TGATTGCAAAGTCGACTTGTGAA 59.375 39.130 30.33 20.73 36.12 3.18
847 854 3.202097 TGATTGCAAAGTCGACTTGTGA 58.798 40.909 30.33 16.95 36.12 3.58
848 855 3.607422 TGATTGCAAAGTCGACTTGTG 57.393 42.857 30.33 26.53 36.12 3.33
849 856 4.036734 ACAATGATTGCAAAGTCGACTTGT 59.963 37.500 30.33 17.55 36.12 3.16
850 857 4.539870 ACAATGATTGCAAAGTCGACTTG 58.460 39.130 30.33 23.04 36.12 3.16
886 893 6.838806 CCGACGTTTTCAATTGATTTGTTTTC 59.161 34.615 9.40 0.18 36.65 2.29
894 901 2.159382 AGGCCGACGTTTTCAATTGAT 58.841 42.857 9.40 0.00 0.00 2.57
895 902 1.600023 AGGCCGACGTTTTCAATTGA 58.400 45.000 3.38 3.38 0.00 2.57
931 953 0.856982 AACAACCACCATCTTCCCCA 59.143 50.000 0.00 0.00 0.00 4.96
934 956 2.955660 TGAACAACAACCACCATCTTCC 59.044 45.455 0.00 0.00 0.00 3.46
969 991 1.376553 GCTGCTGGGACTGTTCCTC 60.377 63.158 6.69 0.00 42.38 3.71
998 1021 2.217510 TCTTGGAGAAGAGGCGTAGT 57.782 50.000 0.00 0.00 32.98 2.73
1003 1028 3.333804 CTCTGTTTCTTGGAGAAGAGGC 58.666 50.000 0.00 0.00 39.44 4.70
1006 1031 4.881019 CTCCTCTGTTTCTTGGAGAAGA 57.119 45.455 0.00 0.00 46.53 2.87
1038 1063 1.394917 CGGTCAAGATCAAGCCTTTCG 59.605 52.381 0.00 0.00 0.00 3.46
1390 1430 2.283388 TACCTTGACGCGGGAGGT 60.283 61.111 26.08 26.08 45.38 3.85
1407 1447 2.364448 GAGGGAAGCGAGGAGGGT 60.364 66.667 0.00 0.00 0.00 4.34
1408 1448 3.157949 GGAGGGAAGCGAGGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
1419 1467 0.984961 CAGAGCAATGGAGGGAGGGA 60.985 60.000 0.00 0.00 0.00 4.20
1520 1588 5.979993 TGTCTGGTGTGTTTCAGTTAACTA 58.020 37.500 8.04 0.00 33.13 2.24
1542 1610 4.991687 GGTTAACTGAGAGTCTGAAACCTG 59.008 45.833 5.42 0.00 34.96 4.00
1565 1633 5.749109 AGTCAGTCAGTTTAACTTCAGTTCG 59.251 40.000 0.00 0.00 39.31 3.95
1687 1760 6.365520 ACAGGAAGTTAGGAACAGTCATTTT 58.634 36.000 0.00 0.00 0.00 1.82
1710 1783 4.338400 ACCTTCAGTTCAGGTTTAAGCAAC 59.662 41.667 0.00 0.00 42.45 4.17
1744 1817 1.560860 GAGCGAGTTCAGGTGTGTGC 61.561 60.000 0.00 0.00 0.00 4.57
1760 1833 5.679734 TCTTTCACAGAATCAACTTGAGC 57.320 39.130 0.00 0.00 0.00 4.26
1775 1848 7.810759 TGTTCCAACAAGTTAAGTTTCTTTCAC 59.189 33.333 0.00 0.00 35.67 3.18
1845 1922 3.282745 CTCGACCACGGTGACAGGG 62.283 68.421 10.28 0.00 40.21 4.45
1850 1927 2.028484 GCAACTCGACCACGGTGA 59.972 61.111 10.28 0.00 40.21 4.02
1876 1953 3.999663 GCTCACAACAGTTGAAGCTAGAT 59.000 43.478 25.43 1.73 38.77 1.98
1878 1955 3.397482 AGCTCACAACAGTTGAAGCTAG 58.603 45.455 30.12 17.18 44.88 3.42
1879 1956 3.475566 AGCTCACAACAGTTGAAGCTA 57.524 42.857 30.12 10.21 44.88 3.32
1912 1989 2.527100 ACGTAGAAGCACTAATCGCAC 58.473 47.619 0.00 0.00 32.49 5.34
1921 2001 0.388134 TCCAGCGAACGTAGAAGCAC 60.388 55.000 0.00 0.00 0.00 4.40
1935 2015 2.798976 TCTGCAACACAAAATCCAGC 57.201 45.000 0.00 0.00 0.00 4.85
1939 2019 6.346838 GCTTAACCAATCTGCAACACAAAATC 60.347 38.462 0.00 0.00 0.00 2.17
1976 2056 5.827797 AGGAACAGCAAAGTTGATAGTTCAA 59.172 36.000 17.82 0.00 39.54 2.69
2150 2230 0.107945 GATGGCTTCGAGTTCTGCCT 60.108 55.000 13.58 3.58 45.11 4.75
2172 2252 1.677552 GTCGATGGTTCCAGGTGGT 59.322 57.895 0.00 0.00 36.34 4.16
2239 2319 5.173854 GTGACTGCAAAAAGGAAAGAAATCG 59.826 40.000 0.00 0.00 0.00 3.34
2282 2372 6.597562 ACTGGAAATTAGTGGTGACTTAACA 58.402 36.000 0.00 0.00 33.21 2.41
2306 2396 0.179150 GTGCACAAAAGCGGACACAA 60.179 50.000 13.17 0.00 37.31 3.33
2381 2471 2.890945 GGTACCTGCAGTGGAAATTGTT 59.109 45.455 13.81 0.00 0.00 2.83
2382 2472 2.514803 GGTACCTGCAGTGGAAATTGT 58.485 47.619 13.81 3.03 0.00 2.71
2463 2553 1.650314 CGTTGGGGTATTTGTCGGCC 61.650 60.000 0.00 0.00 0.00 6.13
2478 2568 3.662247 ACCAAGAGTAGGTTCTCGTTG 57.338 47.619 0.00 0.00 39.21 4.10
2479 2569 4.586001 TGTTACCAAGAGTAGGTTCTCGTT 59.414 41.667 0.00 0.00 40.54 3.85
2496 2586 1.007336 CGAGCTCACCGTGTGTTACC 61.007 60.000 15.40 0.00 34.79 2.85
2536 2630 4.530094 TCTAAACTGTTGTGTTTCGCTG 57.470 40.909 0.00 0.00 40.23 5.18
2582 2676 9.302345 GATTGAATCGAACGATATACCACATAT 57.698 33.333 10.05 0.00 33.97 1.78
2583 2677 7.758076 GGATTGAATCGAACGATATACCACATA 59.242 37.037 10.05 0.00 33.97 2.29
2601 2695 2.026641 CGGTCCATTGCAGGATTGAAT 58.973 47.619 0.00 0.00 40.42 2.57
2608 2702 1.746615 CTCACCGGTCCATTGCAGG 60.747 63.158 2.59 0.00 0.00 4.85
2611 2705 0.605319 TCAACTCACCGGTCCATTGC 60.605 55.000 2.59 0.00 0.00 3.56
2620 2714 0.443869 CAAATCGCCTCAACTCACCG 59.556 55.000 0.00 0.00 0.00 4.94
2624 2722 1.537202 AGCAACAAATCGCCTCAACTC 59.463 47.619 0.00 0.00 0.00 3.01
2737 2835 4.399395 CCGCCAGGCTGCTTCTCA 62.399 66.667 10.54 0.00 0.00 3.27
2757 2864 2.606213 TCTCATCACCGCCACCCA 60.606 61.111 0.00 0.00 0.00 4.51
2870 2977 4.428209 GAGTGGTATGATGATGGCGATAG 58.572 47.826 0.00 0.00 0.00 2.08
2871 2978 3.195610 GGAGTGGTATGATGATGGCGATA 59.804 47.826 0.00 0.00 0.00 2.92
2872 2979 2.027745 GGAGTGGTATGATGATGGCGAT 60.028 50.000 0.00 0.00 0.00 4.58
2873 2980 1.344438 GGAGTGGTATGATGATGGCGA 59.656 52.381 0.00 0.00 0.00 5.54
2896 3003 3.406361 CGTGACCGTGCAGTGCTC 61.406 66.667 17.60 12.17 0.00 4.26
2904 3011 3.530910 AAAGCTCCCCGTGACCGTG 62.531 63.158 0.00 0.00 0.00 4.94
2944 3051 9.202273 GCATAAAATCTTGTGGAAACAAATACA 57.798 29.630 0.00 0.00 46.06 2.29
2959 3066 5.710513 TGACACAGCAAGCATAAAATCTT 57.289 34.783 0.00 0.00 0.00 2.40
2966 3073 5.733676 TCTAAAGATGACACAGCAAGCATA 58.266 37.500 0.00 0.00 0.00 3.14
2974 3081 6.260936 ACCACAGTTTTCTAAAGATGACACAG 59.739 38.462 0.00 0.00 0.00 3.66
2976 3083 6.564125 CGACCACAGTTTTCTAAAGATGACAC 60.564 42.308 0.00 0.00 0.00 3.67
2981 3088 4.969484 ACCGACCACAGTTTTCTAAAGAT 58.031 39.130 0.00 0.00 0.00 2.40
2983 3090 4.318546 CGAACCGACCACAGTTTTCTAAAG 60.319 45.833 0.00 0.00 0.00 1.85
3035 3144 8.771920 AAAAGCAGTTTAGCAAATTATTACCC 57.228 30.769 0.00 0.00 36.85 3.69
3057 3169 9.598517 AATGAATGCAAAAGTTGTCTTAGAAAA 57.401 25.926 0.00 0.00 33.09 2.29
3066 3178 9.270640 TGCTTAATTAATGAATGCAAAAGTTGT 57.729 25.926 6.61 0.00 0.00 3.32
3067 3179 9.532697 GTGCTTAATTAATGAATGCAAAAGTTG 57.467 29.630 9.80 0.00 0.00 3.16
3068 3180 8.434661 CGTGCTTAATTAATGAATGCAAAAGTT 58.565 29.630 9.80 0.00 0.00 2.66
3070 3182 8.103924 GTCGTGCTTAATTAATGAATGCAAAAG 58.896 33.333 9.80 6.22 0.00 2.27
3071 3183 7.596621 TGTCGTGCTTAATTAATGAATGCAAAA 59.403 29.630 9.80 1.15 0.00 2.44
3084 3196 9.325198 TCATTACATCTTATGTCGTGCTTAATT 57.675 29.630 0.00 0.00 43.67 1.40
3085 3197 8.887036 TCATTACATCTTATGTCGTGCTTAAT 57.113 30.769 0.00 0.00 43.67 1.40
3086 3198 8.710835 TTCATTACATCTTATGTCGTGCTTAA 57.289 30.769 0.00 0.00 43.67 1.85
3087 3199 8.710835 TTTCATTACATCTTATGTCGTGCTTA 57.289 30.769 0.00 0.00 43.67 3.09
3088 3200 7.549134 TCTTTCATTACATCTTATGTCGTGCTT 59.451 33.333 0.00 0.00 43.67 3.91
3089 3201 7.010552 GTCTTTCATTACATCTTATGTCGTGCT 59.989 37.037 0.00 0.00 43.67 4.40
3090 3202 7.119997 GTCTTTCATTACATCTTATGTCGTGC 58.880 38.462 0.00 0.00 43.67 5.34
3091 3203 8.110612 GTGTCTTTCATTACATCTTATGTCGTG 58.889 37.037 0.00 0.00 43.67 4.35
3092 3204 7.817478 TGTGTCTTTCATTACATCTTATGTCGT 59.183 33.333 0.00 0.00 43.67 4.34
3093 3205 8.110612 GTGTGTCTTTCATTACATCTTATGTCG 58.889 37.037 0.00 0.00 43.67 4.35
3094 3206 8.391106 GGTGTGTCTTTCATTACATCTTATGTC 58.609 37.037 0.00 0.00 43.67 3.06
3095 3207 7.882791 TGGTGTGTCTTTCATTACATCTTATGT 59.117 33.333 0.00 0.00 46.92 2.29
3096 3208 8.267620 TGGTGTGTCTTTCATTACATCTTATG 57.732 34.615 0.00 0.00 0.00 1.90
3097 3209 9.466497 AATGGTGTGTCTTTCATTACATCTTAT 57.534 29.630 0.00 0.00 0.00 1.73
3098 3210 8.862325 AATGGTGTGTCTTTCATTACATCTTA 57.138 30.769 0.00 0.00 0.00 2.10
3099 3211 7.765695 AATGGTGTGTCTTTCATTACATCTT 57.234 32.000 0.00 0.00 0.00 2.40
3100 3212 8.862325 TTAATGGTGTGTCTTTCATTACATCT 57.138 30.769 0.00 0.00 33.49 2.90
3106 3218 8.584157 TGCTTAATTAATGGTGTGTCTTTCATT 58.416 29.630 0.00 0.00 34.65 2.57
3107 3219 8.028938 GTGCTTAATTAATGGTGTGTCTTTCAT 58.971 33.333 0.00 0.00 0.00 2.57
3108 3220 7.367285 GTGCTTAATTAATGGTGTGTCTTTCA 58.633 34.615 0.00 0.00 0.00 2.69
3109 3221 6.523201 CGTGCTTAATTAATGGTGTGTCTTTC 59.477 38.462 0.00 0.00 0.00 2.62
3110 3222 6.205853 TCGTGCTTAATTAATGGTGTGTCTTT 59.794 34.615 0.00 0.00 0.00 2.52
3111 3223 5.703592 TCGTGCTTAATTAATGGTGTGTCTT 59.296 36.000 0.00 0.00 0.00 3.01
3112 3224 5.121768 GTCGTGCTTAATTAATGGTGTGTCT 59.878 40.000 0.00 0.00 0.00 3.41
3113 3225 5.106869 TGTCGTGCTTAATTAATGGTGTGTC 60.107 40.000 0.00 0.00 0.00 3.67
3114 3226 4.757657 TGTCGTGCTTAATTAATGGTGTGT 59.242 37.500 0.00 0.00 0.00 3.72
3115 3227 5.289917 TGTCGTGCTTAATTAATGGTGTG 57.710 39.130 0.00 0.00 0.00 3.82
3116 3228 5.879237 CATGTCGTGCTTAATTAATGGTGT 58.121 37.500 0.00 0.00 0.00 4.16
3131 3243 3.242944 CCATTTACGTAGAGCATGTCGTG 59.757 47.826 0.00 0.00 37.66 4.35
3132 3244 3.444916 CCATTTACGTAGAGCATGTCGT 58.555 45.455 0.00 1.38 39.74 4.34
3133 3245 2.794910 CCCATTTACGTAGAGCATGTCG 59.205 50.000 0.00 0.00 0.00 4.35
3134 3246 3.131396 CCCCATTTACGTAGAGCATGTC 58.869 50.000 0.00 0.00 0.00 3.06
3135 3247 2.504175 ACCCCATTTACGTAGAGCATGT 59.496 45.455 0.00 0.00 0.00 3.21
3136 3248 3.194005 ACCCCATTTACGTAGAGCATG 57.806 47.619 0.00 0.00 0.00 4.06
3137 3249 3.926058 AACCCCATTTACGTAGAGCAT 57.074 42.857 0.00 0.00 0.00 3.79
3138 3250 3.262405 AGAAACCCCATTTACGTAGAGCA 59.738 43.478 0.00 0.00 0.00 4.26
3412 3534 7.269937 CGTGAAAGAACAACAATGAATCATCTC 59.730 37.037 0.00 0.00 0.00 2.75
3806 3929 8.408043 TCAATTTGGTAAGATCATCACAAACT 57.592 30.769 0.00 0.00 31.61 2.66
3840 3963 3.763897 CCTCTTTTAACTCCCCACCAATG 59.236 47.826 0.00 0.00 0.00 2.82
3855 3978 7.436933 CAAGCCATCTTCTTTTTACCTCTTTT 58.563 34.615 0.00 0.00 0.00 2.27
3868 3995 0.990374 ACTCAGCCAAGCCATCTTCT 59.010 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.