Multiple sequence alignment - TraesCS4D01G365300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G365300 chr4D 100.000 3440 0 0 1 3440 509509624 509513063 0.000000e+00 6353.0
1 TraesCS4D01G365300 chr4D 86.739 1576 174 17 1118 2680 509538081 509536528 0.000000e+00 1720.0
2 TraesCS4D01G365300 chr4D 99.265 136 1 0 864 999 123456460 123456325 2.650000e-61 246.0
3 TraesCS4D01G365300 chr4B 89.637 1737 116 20 999 2679 657255799 657254071 0.000000e+00 2152.0
4 TraesCS4D01G365300 chr4B 91.346 104 1 2 768 863 657255903 657255800 5.990000e-28 135.0
5 TraesCS4D01G365300 chr4B 98.667 75 1 0 447 521 657256255 657256181 2.150000e-27 134.0
6 TraesCS4D01G365300 chr4B 95.918 49 2 0 548 596 657256032 657255984 2.850000e-11 80.5
7 TraesCS4D01G365300 chr5A 88.332 1517 175 2 1165 2680 698456846 698455331 0.000000e+00 1820.0
8 TraesCS4D01G365300 chr5A 84.743 1573 216 15 1114 2680 698451575 698450021 0.000000e+00 1554.0
9 TraesCS4D01G365300 chr5A 80.732 519 80 15 6 520 698358500 698359002 1.500000e-103 387.0
10 TraesCS4D01G365300 chr5A 81.120 482 65 17 1111 1577 698490473 698490003 2.520000e-96 363.0
11 TraesCS4D01G365300 chr1D 84.868 1520 215 11 1167 2680 203268386 203269896 0.000000e+00 1519.0
12 TraesCS4D01G365300 chr1D 96.047 759 28 1 2680 3438 315029888 315029132 0.000000e+00 1234.0
13 TraesCS4D01G365300 chr1D 94.452 757 25 3 2679 3435 291495253 291495992 0.000000e+00 1149.0
14 TraesCS4D01G365300 chr1D 94.675 338 15 3 2681 3017 224483090 224482755 3.930000e-144 521.0
15 TraesCS4D01G365300 chr1D 94.611 334 16 2 2681 3014 315024652 315024321 1.830000e-142 516.0
16 TraesCS4D01G365300 chr1D 92.582 337 19 5 2681 3014 291503236 291503569 2.400000e-131 479.0
17 TraesCS4D01G365300 chr1B 84.878 1521 213 13 1167 2680 297056982 297058492 0.000000e+00 1519.0
18 TraesCS4D01G365300 chr1A 84.539 1520 220 11 1167 2680 257415481 257416991 0.000000e+00 1491.0
19 TraesCS4D01G365300 chr5D 82.051 1521 247 22 1167 2680 33679461 33677960 0.000000e+00 1273.0
20 TraesCS4D01G365300 chr2D 96.311 759 26 1 2680 3438 33225411 33224655 0.000000e+00 1245.0
21 TraesCS4D01G365300 chr7D 96.053 760 25 2 2681 3440 4999884 5000638 0.000000e+00 1232.0
22 TraesCS4D01G365300 chr7D 96.026 755 27 2 2681 3435 218115760 218116511 0.000000e+00 1225.0
23 TraesCS4D01G365300 chr7D 95.767 756 30 1 2680 3435 26393303 26394056 0.000000e+00 1218.0
24 TraesCS4D01G365300 chr7D 94.737 760 32 5 2676 3435 503001282 503002033 0.000000e+00 1175.0
25 TraesCS4D01G365300 chr7D 99.265 136 1 0 864 999 382108578 382108713 2.650000e-61 246.0
26 TraesCS4D01G365300 chr7D 99.265 136 1 0 864 999 606875702 606875567 2.650000e-61 246.0
27 TraesCS4D01G365300 chr7D 99.265 136 1 0 864 999 626735462 626735597 2.650000e-61 246.0
28 TraesCS4D01G365300 chr6D 96.032 756 25 2 2680 3435 181719289 181720039 0.000000e+00 1225.0
29 TraesCS4D01G365300 chr6D 95.899 756 26 3 2680 3435 468542871 468543621 0.000000e+00 1219.0
30 TraesCS4D01G365300 chr6D 94.970 338 15 2 2681 3018 468548085 468548420 2.350000e-146 529.0
31 TraesCS4D01G365300 chr6D 99.265 136 1 0 864 999 458957767 458957632 2.650000e-61 246.0
32 TraesCS4D01G365300 chr3D 95.767 756 28 3 2681 3435 333229337 333230089 0.000000e+00 1216.0
33 TraesCS4D01G365300 chr3D 94.172 755 28 2 2681 3435 590757806 590758544 0.000000e+00 1136.0
34 TraesCS4D01G365300 chr3D 93.769 337 13 6 2681 3014 548603620 548603951 1.840000e-137 499.0
35 TraesCS4D01G365300 chr3D 99.265 136 1 0 864 999 154776559 154776694 2.650000e-61 246.0
36 TraesCS4D01G365300 chr6B 81.366 1508 264 12 1167 2670 19233005 19234499 0.000000e+00 1212.0
37 TraesCS4D01G365300 chrUn 99.265 136 1 0 864 999 264059324 264059459 2.650000e-61 246.0
38 TraesCS4D01G365300 chrUn 99.265 136 1 0 864 999 361509998 361509863 2.650000e-61 246.0
39 TraesCS4D01G365300 chr6A 99.265 136 1 0 864 999 597237268 597237403 2.650000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G365300 chr4D 509509624 509513063 3439 False 6353.000 6353 100.0000 1 3440 1 chr4D.!!$F1 3439
1 TraesCS4D01G365300 chr4D 509536528 509538081 1553 True 1720.000 1720 86.7390 1118 2680 1 chr4D.!!$R2 1562
2 TraesCS4D01G365300 chr4B 657254071 657256255 2184 True 625.375 2152 93.8920 447 2679 4 chr4B.!!$R1 2232
3 TraesCS4D01G365300 chr5A 698450021 698456846 6825 True 1687.000 1820 86.5375 1114 2680 2 chr5A.!!$R2 1566
4 TraesCS4D01G365300 chr5A 698358500 698359002 502 False 387.000 387 80.7320 6 520 1 chr5A.!!$F1 514
5 TraesCS4D01G365300 chr1D 203268386 203269896 1510 False 1519.000 1519 84.8680 1167 2680 1 chr1D.!!$F1 1513
6 TraesCS4D01G365300 chr1D 315029132 315029888 756 True 1234.000 1234 96.0470 2680 3438 1 chr1D.!!$R3 758
7 TraesCS4D01G365300 chr1D 291495253 291495992 739 False 1149.000 1149 94.4520 2679 3435 1 chr1D.!!$F2 756
8 TraesCS4D01G365300 chr1B 297056982 297058492 1510 False 1519.000 1519 84.8780 1167 2680 1 chr1B.!!$F1 1513
9 TraesCS4D01G365300 chr1A 257415481 257416991 1510 False 1491.000 1491 84.5390 1167 2680 1 chr1A.!!$F1 1513
10 TraesCS4D01G365300 chr5D 33677960 33679461 1501 True 1273.000 1273 82.0510 1167 2680 1 chr5D.!!$R1 1513
11 TraesCS4D01G365300 chr2D 33224655 33225411 756 True 1245.000 1245 96.3110 2680 3438 1 chr2D.!!$R1 758
12 TraesCS4D01G365300 chr7D 4999884 5000638 754 False 1232.000 1232 96.0530 2681 3440 1 chr7D.!!$F1 759
13 TraesCS4D01G365300 chr7D 218115760 218116511 751 False 1225.000 1225 96.0260 2681 3435 1 chr7D.!!$F3 754
14 TraesCS4D01G365300 chr7D 26393303 26394056 753 False 1218.000 1218 95.7670 2680 3435 1 chr7D.!!$F2 755
15 TraesCS4D01G365300 chr7D 503001282 503002033 751 False 1175.000 1175 94.7370 2676 3435 1 chr7D.!!$F5 759
16 TraesCS4D01G365300 chr6D 181719289 181720039 750 False 1225.000 1225 96.0320 2680 3435 1 chr6D.!!$F1 755
17 TraesCS4D01G365300 chr6D 468542871 468543621 750 False 1219.000 1219 95.8990 2680 3435 1 chr6D.!!$F2 755
18 TraesCS4D01G365300 chr3D 333229337 333230089 752 False 1216.000 1216 95.7670 2681 3435 1 chr3D.!!$F2 754
19 TraesCS4D01G365300 chr3D 590757806 590758544 738 False 1136.000 1136 94.1720 2681 3435 1 chr3D.!!$F4 754
20 TraesCS4D01G365300 chr6B 19233005 19234499 1494 False 1212.000 1212 81.3660 1167 2670 1 chr6B.!!$F1 1503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 858 0.035458 GAGGTGGTGACAGGGTGAAG 59.965 60.0 0.0 0.0 44.46 3.02 F
703 863 0.036875 GGTGACAGGGTGAAGGAAGG 59.963 60.0 0.0 0.0 0.00 3.46 F
912 1080 0.109723 TTTGTAGAAACCTGCGGCCT 59.890 50.0 0.0 0.0 0.00 5.19 F
1674 1908 0.393077 CCACCGTCACCTTCTTGTCT 59.607 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 1858 0.389948 GTGAACCTGCGGTAGTCCTG 60.390 60.000 0.62 0.0 33.12 3.86 R
1810 2044 0.663153 GTGGACAGGTTGAAGCACAC 59.337 55.000 0.00 0.0 0.00 3.82 R
2438 2672 0.886490 CTGCTTGAGGTTGCCGAACT 60.886 55.000 0.00 0.0 32.15 3.01 R
2987 5483 1.075450 CTAGGGTTCCTACCGGGCT 60.075 63.158 6.32 0.0 46.04 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.691976 TCGCCATACATTACTGGAGGG 59.308 52.381 0.00 0.00 40.34 4.30
58 59 8.726988 GTTTAGTGATTTGTCTGGCATAACTTA 58.273 33.333 0.00 0.00 0.00 2.24
60 61 5.351465 AGTGATTTGTCTGGCATAACTTACG 59.649 40.000 0.00 0.00 0.00 3.18
72 74 6.596106 TGGCATAACTTACGCTTCATTAAGAA 59.404 34.615 0.00 0.00 34.37 2.52
73 75 6.905609 GGCATAACTTACGCTTCATTAAGAAC 59.094 38.462 0.00 0.00 34.37 3.01
74 76 6.623743 GCATAACTTACGCTTCATTAAGAACG 59.376 38.462 0.00 0.00 37.04 3.95
75 77 7.463648 GCATAACTTACGCTTCATTAAGAACGA 60.464 37.037 0.00 0.00 35.86 3.85
79 81 6.423001 ACTTACGCTTCATTAAGAACGAAACT 59.577 34.615 0.00 0.00 35.86 2.66
80 82 5.668558 ACGCTTCATTAAGAACGAAACTT 57.331 34.783 0.00 0.00 35.86 2.66
81 83 6.056428 ACGCTTCATTAAGAACGAAACTTT 57.944 33.333 0.00 0.00 35.86 2.66
82 84 5.907391 ACGCTTCATTAAGAACGAAACTTTG 59.093 36.000 0.00 0.00 35.86 2.77
119 121 0.698238 TCAACATTGAGGGACTGGGG 59.302 55.000 0.00 0.00 41.55 4.96
142 144 5.388111 GGGACAGTTTGTAATTTCGCTAAC 58.612 41.667 0.00 0.00 0.00 2.34
144 146 6.349033 GGGACAGTTTGTAATTTCGCTAACAT 60.349 38.462 0.00 0.00 0.00 2.71
155 157 1.996898 TCGCTAACATTACCTTGTGCG 59.003 47.619 0.00 0.00 41.00 5.34
167 169 1.732259 CCTTGTGCGTACTGGTGAATC 59.268 52.381 4.97 0.00 0.00 2.52
179 181 7.201350 GCGTACTGGTGAATCATTTTTCATTTC 60.201 37.037 0.00 0.00 37.88 2.17
186 188 8.246180 GGTGAATCATTTTTCATTTCTGCTCTA 58.754 33.333 0.00 0.00 37.88 2.43
195 197 7.421530 TTTCATTTCTGCTCTACTTGTGTAC 57.578 36.000 0.00 0.00 0.00 2.90
196 198 5.479306 TCATTTCTGCTCTACTTGTGTACC 58.521 41.667 0.00 0.00 0.00 3.34
197 199 4.948341 TTTCTGCTCTACTTGTGTACCA 57.052 40.909 0.00 0.00 0.00 3.25
199 201 5.483685 TTCTGCTCTACTTGTGTACCATT 57.516 39.130 0.00 0.00 0.00 3.16
201 203 5.237815 TCTGCTCTACTTGTGTACCATTTG 58.762 41.667 0.00 0.00 0.00 2.32
205 207 6.320164 TGCTCTACTTGTGTACCATTTGTTTT 59.680 34.615 0.00 0.00 0.00 2.43
206 208 7.147983 TGCTCTACTTGTGTACCATTTGTTTTT 60.148 33.333 0.00 0.00 0.00 1.94
207 209 7.167468 GCTCTACTTGTGTACCATTTGTTTTTG 59.833 37.037 0.00 0.00 0.00 2.44
208 210 8.057536 TCTACTTGTGTACCATTTGTTTTTGT 57.942 30.769 0.00 0.00 0.00 2.83
209 211 8.185505 TCTACTTGTGTACCATTTGTTTTTGTC 58.814 33.333 0.00 0.00 0.00 3.18
210 212 6.103330 ACTTGTGTACCATTTGTTTTTGTCC 58.897 36.000 0.00 0.00 0.00 4.02
211 213 5.923733 TGTGTACCATTTGTTTTTGTCCT 57.076 34.783 0.00 0.00 0.00 3.85
217 219 6.751514 ACCATTTGTTTTTGTCCTTTTTCC 57.248 33.333 0.00 0.00 0.00 3.13
222 224 9.636879 CATTTGTTTTTGTCCTTTTTCCAAAAT 57.363 25.926 0.00 0.00 37.75 1.82
224 226 7.384439 TGTTTTTGTCCTTTTTCCAAAATCC 57.616 32.000 0.00 0.00 37.75 3.01
225 227 6.092807 TGTTTTTGTCCTTTTTCCAAAATCCG 59.907 34.615 0.00 0.00 37.75 4.18
228 230 5.799827 TGTCCTTTTTCCAAAATCCGAAT 57.200 34.783 0.00 0.00 0.00 3.34
232 234 7.177568 TGTCCTTTTTCCAAAATCCGAATATGA 59.822 33.333 0.00 0.00 0.00 2.15
247 249 5.522824 CCGAATATGAGTGGATGCTGATATG 59.477 44.000 0.00 0.00 28.39 1.78
249 251 6.815142 CGAATATGAGTGGATGCTGATATGAA 59.185 38.462 0.00 0.00 28.39 2.57
250 252 7.332678 CGAATATGAGTGGATGCTGATATGAAA 59.667 37.037 0.00 0.00 28.39 2.69
255 257 8.070034 TGAGTGGATGCTGATATGAAATTTTT 57.930 30.769 0.00 0.00 0.00 1.94
256 258 7.977293 TGAGTGGATGCTGATATGAAATTTTTG 59.023 33.333 0.00 0.00 0.00 2.44
260 262 9.504708 TGGATGCTGATATGAAATTTTTGTTTT 57.495 25.926 0.00 0.00 0.00 2.43
261 263 9.977762 GGATGCTGATATGAAATTTTTGTTTTC 57.022 29.630 0.00 0.00 34.40 2.29
262 264 9.977762 GATGCTGATATGAAATTTTTGTTTTCC 57.022 29.630 0.00 0.00 33.15 3.13
264 266 8.991026 TGCTGATATGAAATTTTTGTTTTCCTG 58.009 29.630 0.00 0.00 33.15 3.86
270 272 7.306205 TGAAATTTTTGTTTTCCTGAAGCTG 57.694 32.000 0.00 0.00 33.15 4.24
281 283 1.065636 CCTGAAGCTGCTTCTGATCCA 60.066 52.381 35.89 20.15 40.32 3.41
289 291 2.399916 GCTTCTGATCCAAGCAGAGT 57.600 50.000 17.57 0.00 44.87 3.24
305 307 5.378332 AGCAGAGTTGGAGATATACTACGT 58.622 41.667 0.00 0.00 30.62 3.57
314 316 2.820787 AGATATACTACGTCTGCCAGGC 59.179 50.000 3.66 3.66 0.00 4.85
321 323 3.044305 GTCTGCCAGGCGACACAC 61.044 66.667 23.50 6.85 34.30 3.82
324 326 1.446792 CTGCCAGGCGACACACTAG 60.447 63.158 7.03 0.00 0.00 2.57
338 340 3.088532 CACACTAGAAGCTCTCCAGTCT 58.911 50.000 0.00 0.00 0.00 3.24
342 344 4.219507 CACTAGAAGCTCTCCAGTCTTTGA 59.780 45.833 0.00 0.00 0.00 2.69
344 346 4.001618 AGAAGCTCTCCAGTCTTTGAAC 57.998 45.455 0.00 0.00 0.00 3.18
358 360 7.039784 CCAGTCTTTGAACTTGATAAAATCCCA 60.040 37.037 0.00 0.00 0.00 4.37
359 361 7.809806 CAGTCTTTGAACTTGATAAAATCCCAC 59.190 37.037 0.00 0.00 0.00 4.61
369 371 8.096414 ACTTGATAAAATCCCACATGAAAAAGG 58.904 33.333 0.00 0.00 0.00 3.11
386 388 2.514824 GTCTTCCAGGGCCGCATC 60.515 66.667 0.00 0.00 0.00 3.91
387 389 3.008517 TCTTCCAGGGCCGCATCA 61.009 61.111 0.00 0.00 0.00 3.07
400 402 1.080569 GCATCAAAGGCAACCACCG 60.081 57.895 0.00 0.00 33.69 4.94
410 412 2.203294 AACCACCGCCAGAACACC 60.203 61.111 0.00 0.00 0.00 4.16
414 416 1.227823 CACCGCCAGAACACCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
419 421 1.444119 GCCAGAACACCTCAACGCAA 61.444 55.000 0.00 0.00 0.00 4.85
422 424 1.261619 CAGAACACCTCAACGCAAGAC 59.738 52.381 0.00 0.00 43.62 3.01
425 427 2.902705 ACACCTCAACGCAAGACTTA 57.097 45.000 0.00 0.00 43.62 2.24
428 430 3.067106 CACCTCAACGCAAGACTTACAT 58.933 45.455 0.00 0.00 43.62 2.29
429 431 3.123621 CACCTCAACGCAAGACTTACATC 59.876 47.826 0.00 0.00 43.62 3.06
430 432 3.244078 ACCTCAACGCAAGACTTACATCA 60.244 43.478 0.00 0.00 43.62 3.07
431 433 3.935203 CCTCAACGCAAGACTTACATCAT 59.065 43.478 0.00 0.00 43.62 2.45
432 434 4.033358 CCTCAACGCAAGACTTACATCATC 59.967 45.833 0.00 0.00 43.62 2.92
433 435 4.565022 TCAACGCAAGACTTACATCATCA 58.435 39.130 0.00 0.00 43.62 3.07
442 444 7.431376 GCAAGACTTACATCATCAATCAACATG 59.569 37.037 0.00 0.00 0.00 3.21
444 446 5.813717 ACTTACATCATCAATCAACATGCG 58.186 37.500 0.00 0.00 0.00 4.73
528 550 4.764823 GGTCACATTCAAAGGTCCATGTTA 59.235 41.667 0.00 0.00 0.00 2.41
558 682 5.183904 GGAGACCAAAGTGCATATCAAGTTT 59.816 40.000 0.00 0.00 0.00 2.66
610 770 0.620556 GATGGCAGGGTGAAGGAAGA 59.379 55.000 0.00 0.00 0.00 2.87
617 777 1.739067 GGGTGAAGGAAGATCAACCG 58.261 55.000 0.00 0.00 44.25 4.44
644 804 2.514205 TTTTGCTTGGAAGAAGCTGC 57.486 45.000 7.84 0.00 43.38 5.25
645 805 1.696063 TTTGCTTGGAAGAAGCTGCT 58.304 45.000 0.00 0.00 43.38 4.24
646 806 0.956633 TTGCTTGGAAGAAGCTGCTG 59.043 50.000 1.35 0.00 43.38 4.41
647 807 0.892358 TGCTTGGAAGAAGCTGCTGG 60.892 55.000 1.35 0.00 43.38 4.85
648 808 0.892814 GCTTGGAAGAAGCTGCTGGT 60.893 55.000 1.35 0.00 40.01 4.00
649 809 0.879765 CTTGGAAGAAGCTGCTGGTG 59.120 55.000 1.35 0.00 0.00 4.17
650 810 0.538057 TTGGAAGAAGCTGCTGGTGG 60.538 55.000 1.35 0.00 0.00 4.61
651 811 1.676967 GGAAGAAGCTGCTGGTGGG 60.677 63.158 1.35 0.00 0.00 4.61
652 812 2.282745 AAGAAGCTGCTGGTGGGC 60.283 61.111 1.35 0.00 0.00 5.36
653 813 2.761304 GAAGAAGCTGCTGGTGGGCT 62.761 60.000 1.35 0.00 37.99 5.19
654 814 2.282745 GAAGCTGCTGGTGGGCTT 60.283 61.111 1.35 0.00 46.99 4.35
655 815 2.282745 AAGCTGCTGGTGGGCTTC 60.283 61.111 1.35 0.00 41.68 3.86
656 816 4.711949 AGCTGCTGGTGGGCTTCG 62.712 66.667 0.00 0.00 31.81 3.79
667 827 4.980805 GGCTTCGCGGTGGTGACA 62.981 66.667 6.13 0.00 38.70 3.58
668 828 3.414700 GCTTCGCGGTGGTGACAG 61.415 66.667 6.13 0.00 44.46 3.51
669 829 2.738521 CTTCGCGGTGGTGACAGG 60.739 66.667 6.13 0.00 44.46 4.00
670 830 4.308458 TTCGCGGTGGTGACAGGG 62.308 66.667 6.13 0.00 44.46 4.45
675 835 4.394712 GGTGGTGACAGGGGCGAG 62.395 72.222 0.00 0.00 44.46 5.03
676 836 4.394712 GTGGTGACAGGGGCGAGG 62.395 72.222 0.00 0.00 44.46 4.63
689 849 4.436998 CGAGGGCGAGGTGGTGAC 62.437 72.222 0.00 0.00 40.82 3.67
690 850 3.311110 GAGGGCGAGGTGGTGACA 61.311 66.667 0.00 0.00 38.70 3.58
691 851 3.302347 GAGGGCGAGGTGGTGACAG 62.302 68.421 0.00 0.00 44.46 3.51
692 852 4.394712 GGGCGAGGTGGTGACAGG 62.395 72.222 0.00 0.00 44.46 4.00
693 853 4.394712 GGCGAGGTGGTGACAGGG 62.395 72.222 0.00 0.00 44.46 4.45
694 854 3.626924 GCGAGGTGGTGACAGGGT 61.627 66.667 0.00 0.00 44.46 4.34
695 855 2.343758 CGAGGTGGTGACAGGGTG 59.656 66.667 0.00 0.00 44.46 4.61
696 856 2.207229 CGAGGTGGTGACAGGGTGA 61.207 63.158 0.00 0.00 44.46 4.02
697 857 1.754380 CGAGGTGGTGACAGGGTGAA 61.754 60.000 0.00 0.00 44.46 3.18
698 858 0.035458 GAGGTGGTGACAGGGTGAAG 59.965 60.000 0.00 0.00 44.46 3.02
699 859 1.073199 GGTGGTGACAGGGTGAAGG 59.927 63.158 0.00 0.00 44.46 3.46
700 860 1.415672 GGTGGTGACAGGGTGAAGGA 61.416 60.000 0.00 0.00 44.46 3.36
701 861 0.472471 GTGGTGACAGGGTGAAGGAA 59.528 55.000 0.00 0.00 44.46 3.36
702 862 0.764890 TGGTGACAGGGTGAAGGAAG 59.235 55.000 0.00 0.00 35.01 3.46
703 863 0.036875 GGTGACAGGGTGAAGGAAGG 59.963 60.000 0.00 0.00 0.00 3.46
704 864 1.056660 GTGACAGGGTGAAGGAAGGA 58.943 55.000 0.00 0.00 0.00 3.36
705 865 1.420138 GTGACAGGGTGAAGGAAGGAA 59.580 52.381 0.00 0.00 0.00 3.36
706 866 1.699634 TGACAGGGTGAAGGAAGGAAG 59.300 52.381 0.00 0.00 0.00 3.46
707 867 1.003696 GACAGGGTGAAGGAAGGAAGG 59.996 57.143 0.00 0.00 0.00 3.46
708 868 1.362224 CAGGGTGAAGGAAGGAAGGA 58.638 55.000 0.00 0.00 0.00 3.36
709 869 1.705186 CAGGGTGAAGGAAGGAAGGAA 59.295 52.381 0.00 0.00 0.00 3.36
710 870 1.988846 AGGGTGAAGGAAGGAAGGAAG 59.011 52.381 0.00 0.00 0.00 3.46
711 871 1.004862 GGGTGAAGGAAGGAAGGAAGG 59.995 57.143 0.00 0.00 0.00 3.46
712 872 1.985895 GGTGAAGGAAGGAAGGAAGGA 59.014 52.381 0.00 0.00 0.00 3.36
713 873 2.375509 GGTGAAGGAAGGAAGGAAGGAA 59.624 50.000 0.00 0.00 0.00 3.36
714 874 3.560239 GGTGAAGGAAGGAAGGAAGGAAG 60.560 52.174 0.00 0.00 0.00 3.46
715 875 3.328050 GTGAAGGAAGGAAGGAAGGAAGA 59.672 47.826 0.00 0.00 0.00 2.87
716 876 3.584848 TGAAGGAAGGAAGGAAGGAAGAG 59.415 47.826 0.00 0.00 0.00 2.85
717 877 3.569135 AGGAAGGAAGGAAGGAAGAGA 57.431 47.619 0.00 0.00 0.00 3.10
718 878 4.087243 AGGAAGGAAGGAAGGAAGAGAT 57.913 45.455 0.00 0.00 0.00 2.75
719 879 4.443658 AGGAAGGAAGGAAGGAAGAGATT 58.556 43.478 0.00 0.00 0.00 2.40
720 880 4.227073 AGGAAGGAAGGAAGGAAGAGATTG 59.773 45.833 0.00 0.00 0.00 2.67
721 881 4.522114 GAAGGAAGGAAGGAAGAGATTGG 58.478 47.826 0.00 0.00 0.00 3.16
722 882 3.808189 AGGAAGGAAGGAAGAGATTGGA 58.192 45.455 0.00 0.00 0.00 3.53
723 883 4.378961 AGGAAGGAAGGAAGAGATTGGAT 58.621 43.478 0.00 0.00 0.00 3.41
724 884 4.792972 AGGAAGGAAGGAAGAGATTGGATT 59.207 41.667 0.00 0.00 0.00 3.01
725 885 5.254972 AGGAAGGAAGGAAGAGATTGGATTT 59.745 40.000 0.00 0.00 0.00 2.17
726 886 5.359292 GGAAGGAAGGAAGAGATTGGATTTG 59.641 44.000 0.00 0.00 0.00 2.32
727 887 4.276642 AGGAAGGAAGAGATTGGATTTGC 58.723 43.478 0.00 0.00 0.00 3.68
728 888 4.019174 GGAAGGAAGAGATTGGATTTGCA 58.981 43.478 0.00 0.00 0.00 4.08
729 889 4.463891 GGAAGGAAGAGATTGGATTTGCAA 59.536 41.667 0.00 0.00 0.00 4.08
730 890 5.128335 GGAAGGAAGAGATTGGATTTGCAAT 59.872 40.000 0.00 0.00 0.00 3.56
731 891 6.322201 GGAAGGAAGAGATTGGATTTGCAATA 59.678 38.462 0.00 0.00 0.00 1.90
732 892 6.705863 AGGAAGAGATTGGATTTGCAATAC 57.294 37.500 0.00 0.00 0.00 1.89
733 893 6.189859 AGGAAGAGATTGGATTTGCAATACA 58.810 36.000 0.00 0.00 0.00 2.29
734 894 6.664816 AGGAAGAGATTGGATTTGCAATACAA 59.335 34.615 0.00 6.70 36.13 2.41
745 905 5.596836 TTTGCAATACAAAGGGATGGATC 57.403 39.130 0.00 0.00 43.35 3.36
746 906 4.524802 TGCAATACAAAGGGATGGATCT 57.475 40.909 0.00 0.00 0.00 2.75
747 907 4.209538 TGCAATACAAAGGGATGGATCTG 58.790 43.478 0.00 0.00 0.00 2.90
748 908 4.210331 GCAATACAAAGGGATGGATCTGT 58.790 43.478 0.00 0.00 0.00 3.41
749 909 4.646492 GCAATACAAAGGGATGGATCTGTT 59.354 41.667 0.00 0.00 0.00 3.16
750 910 5.127682 GCAATACAAAGGGATGGATCTGTTT 59.872 40.000 0.00 0.00 0.00 2.83
751 911 6.567050 CAATACAAAGGGATGGATCTGTTTG 58.433 40.000 0.00 10.33 36.45 2.93
752 912 3.434309 ACAAAGGGATGGATCTGTTTGG 58.566 45.455 13.88 0.00 35.58 3.28
753 913 3.181418 ACAAAGGGATGGATCTGTTTGGT 60.181 43.478 13.88 0.00 35.58 3.67
754 914 2.814805 AGGGATGGATCTGTTTGGTG 57.185 50.000 0.00 0.00 0.00 4.17
755 915 1.106285 GGGATGGATCTGTTTGGTGC 58.894 55.000 0.00 0.00 0.00 5.01
756 916 1.616725 GGGATGGATCTGTTTGGTGCA 60.617 52.381 0.00 0.00 0.00 4.57
757 917 1.474077 GGATGGATCTGTTTGGTGCAC 59.526 52.381 8.80 8.80 0.00 4.57
758 918 2.161855 GATGGATCTGTTTGGTGCACA 58.838 47.619 20.43 1.62 0.00 4.57
759 919 1.608055 TGGATCTGTTTGGTGCACAG 58.392 50.000 20.43 7.08 42.74 3.66
760 920 0.242017 GGATCTGTTTGGTGCACAGC 59.758 55.000 20.43 2.20 41.37 4.40
761 921 0.953727 GATCTGTTTGGTGCACAGCA 59.046 50.000 20.43 5.31 41.37 4.41
851 1019 3.195610 TGCTTGTCCAGGATACACACTAG 59.804 47.826 0.00 0.00 41.41 2.57
863 1031 6.773685 AGGATACACACTAGGACTATGACTTC 59.226 42.308 0.00 0.00 41.41 3.01
864 1032 6.546403 GGATACACACTAGGACTATGACTTCA 59.454 42.308 0.00 0.00 0.00 3.02
865 1033 5.646577 ACACACTAGGACTATGACTTCAC 57.353 43.478 0.00 0.00 0.00 3.18
866 1034 5.077564 ACACACTAGGACTATGACTTCACA 58.922 41.667 0.00 0.00 0.00 3.58
867 1035 5.538813 ACACACTAGGACTATGACTTCACAA 59.461 40.000 0.00 0.00 0.00 3.33
868 1036 6.096036 CACACTAGGACTATGACTTCACAAG 58.904 44.000 0.00 0.00 0.00 3.16
869 1037 5.775701 ACACTAGGACTATGACTTCACAAGT 59.224 40.000 0.00 0.00 46.38 3.16
870 1038 6.267928 ACACTAGGACTATGACTTCACAAGTT 59.732 38.462 0.00 0.00 43.03 2.66
871 1039 6.809196 CACTAGGACTATGACTTCACAAGTTC 59.191 42.308 0.00 0.00 43.03 3.01
872 1040 5.808366 AGGACTATGACTTCACAAGTTCA 57.192 39.130 5.18 0.00 43.03 3.18
873 1041 6.174720 AGGACTATGACTTCACAAGTTCAA 57.825 37.500 5.18 0.00 43.03 2.69
874 1042 6.591935 AGGACTATGACTTCACAAGTTCAAA 58.408 36.000 5.18 0.00 43.03 2.69
875 1043 7.227156 AGGACTATGACTTCACAAGTTCAAAT 58.773 34.615 5.18 0.00 43.03 2.32
876 1044 8.375506 AGGACTATGACTTCACAAGTTCAAATA 58.624 33.333 5.18 0.00 43.03 1.40
877 1045 9.167311 GGACTATGACTTCACAAGTTCAAATAT 57.833 33.333 0.00 0.00 43.03 1.28
879 1047 9.950496 ACTATGACTTCACAAGTTCAAATATCT 57.050 29.630 0.00 0.00 43.03 1.98
882 1050 7.874940 TGACTTCACAAGTTCAAATATCTTGG 58.125 34.615 8.59 0.00 43.03 3.61
883 1051 6.681777 ACTTCACAAGTTCAAATATCTTGGC 58.318 36.000 8.59 0.00 39.04 4.52
884 1052 5.643379 TCACAAGTTCAAATATCTTGGCC 57.357 39.130 0.00 0.00 41.64 5.36
885 1053 5.324409 TCACAAGTTCAAATATCTTGGCCT 58.676 37.500 3.32 0.00 41.64 5.19
886 1054 6.480763 TCACAAGTTCAAATATCTTGGCCTA 58.519 36.000 3.32 0.00 41.64 3.93
887 1055 6.945435 TCACAAGTTCAAATATCTTGGCCTAA 59.055 34.615 3.32 0.00 41.64 2.69
888 1056 7.029563 CACAAGTTCAAATATCTTGGCCTAAC 58.970 38.462 3.32 0.00 41.64 2.34
889 1057 6.152831 ACAAGTTCAAATATCTTGGCCTAACC 59.847 38.462 3.32 0.00 41.64 2.85
890 1058 6.079712 AGTTCAAATATCTTGGCCTAACCT 57.920 37.500 3.32 0.00 40.22 3.50
891 1059 7.208064 AGTTCAAATATCTTGGCCTAACCTA 57.792 36.000 3.32 0.00 40.22 3.08
892 1060 7.639378 AGTTCAAATATCTTGGCCTAACCTAA 58.361 34.615 3.32 0.00 40.22 2.69
893 1061 8.282256 AGTTCAAATATCTTGGCCTAACCTAAT 58.718 33.333 3.32 0.00 40.22 1.73
894 1062 8.914011 GTTCAAATATCTTGGCCTAACCTAATT 58.086 33.333 3.32 0.00 40.22 1.40
895 1063 9.487442 TTCAAATATCTTGGCCTAACCTAATTT 57.513 29.630 3.32 0.00 40.22 1.82
896 1064 8.912988 TCAAATATCTTGGCCTAACCTAATTTG 58.087 33.333 3.32 11.36 40.22 2.32
897 1065 8.695456 CAAATATCTTGGCCTAACCTAATTTGT 58.305 33.333 3.32 0.00 40.22 2.83
898 1066 9.930158 AAATATCTTGGCCTAACCTAATTTGTA 57.070 29.630 3.32 0.00 40.22 2.41
899 1067 9.574516 AATATCTTGGCCTAACCTAATTTGTAG 57.425 33.333 3.32 0.00 40.22 2.74
900 1068 6.630203 TCTTGGCCTAACCTAATTTGTAGA 57.370 37.500 3.32 0.00 40.22 2.59
901 1069 7.023171 TCTTGGCCTAACCTAATTTGTAGAA 57.977 36.000 3.32 0.00 40.22 2.10
902 1070 7.463431 TCTTGGCCTAACCTAATTTGTAGAAA 58.537 34.615 3.32 0.00 40.22 2.52
903 1071 7.392393 TCTTGGCCTAACCTAATTTGTAGAAAC 59.608 37.037 3.32 0.00 40.22 2.78
904 1072 5.947566 TGGCCTAACCTAATTTGTAGAAACC 59.052 40.000 3.32 0.00 40.22 3.27
905 1073 6.185511 GGCCTAACCTAATTTGTAGAAACCT 58.814 40.000 0.00 0.00 34.51 3.50
906 1074 6.095021 GGCCTAACCTAATTTGTAGAAACCTG 59.905 42.308 0.00 0.00 34.51 4.00
907 1075 6.404403 GCCTAACCTAATTTGTAGAAACCTGC 60.404 42.308 0.00 0.00 0.00 4.85
908 1076 5.622770 AACCTAATTTGTAGAAACCTGCG 57.377 39.130 0.00 0.00 0.00 5.18
909 1077 4.007659 ACCTAATTTGTAGAAACCTGCGG 58.992 43.478 0.00 0.00 0.00 5.69
910 1078 3.181500 CCTAATTTGTAGAAACCTGCGGC 60.181 47.826 0.00 0.00 0.00 6.53
911 1079 1.173913 ATTTGTAGAAACCTGCGGCC 58.826 50.000 0.00 0.00 0.00 6.13
912 1080 0.109723 TTTGTAGAAACCTGCGGCCT 59.890 50.000 0.00 0.00 0.00 5.19
913 1081 0.978151 TTGTAGAAACCTGCGGCCTA 59.022 50.000 0.00 0.00 0.00 3.93
914 1082 0.978151 TGTAGAAACCTGCGGCCTAA 59.022 50.000 0.00 0.00 0.00 2.69
915 1083 1.348366 TGTAGAAACCTGCGGCCTAAA 59.652 47.619 0.00 0.00 0.00 1.85
916 1084 2.026636 TGTAGAAACCTGCGGCCTAAAT 60.027 45.455 0.00 0.00 0.00 1.40
917 1085 2.215942 AGAAACCTGCGGCCTAAATT 57.784 45.000 0.00 0.00 0.00 1.82
918 1086 3.359695 AGAAACCTGCGGCCTAAATTA 57.640 42.857 0.00 0.00 0.00 1.40
919 1087 3.692690 AGAAACCTGCGGCCTAAATTAA 58.307 40.909 0.00 0.00 0.00 1.40
920 1088 4.083565 AGAAACCTGCGGCCTAAATTAAA 58.916 39.130 0.00 0.00 0.00 1.52
921 1089 4.157840 AGAAACCTGCGGCCTAAATTAAAG 59.842 41.667 0.00 0.00 0.00 1.85
922 1090 3.359695 ACCTGCGGCCTAAATTAAAGA 57.640 42.857 0.00 0.00 0.00 2.52
923 1091 3.014623 ACCTGCGGCCTAAATTAAAGAC 58.985 45.455 0.00 0.00 0.00 3.01
924 1092 3.279434 CCTGCGGCCTAAATTAAAGACT 58.721 45.455 0.00 0.00 0.00 3.24
925 1093 4.080751 ACCTGCGGCCTAAATTAAAGACTA 60.081 41.667 0.00 0.00 0.00 2.59
926 1094 4.879545 CCTGCGGCCTAAATTAAAGACTAA 59.120 41.667 0.00 0.00 0.00 2.24
927 1095 5.531287 CCTGCGGCCTAAATTAAAGACTAAT 59.469 40.000 0.00 0.00 0.00 1.73
928 1096 6.039382 CCTGCGGCCTAAATTAAAGACTAATT 59.961 38.462 0.00 0.00 0.00 1.40
929 1097 7.023197 TGCGGCCTAAATTAAAGACTAATTC 57.977 36.000 0.00 0.00 0.00 2.17
930 1098 6.826741 TGCGGCCTAAATTAAAGACTAATTCT 59.173 34.615 0.00 0.00 35.32 2.40
931 1099 7.988599 TGCGGCCTAAATTAAAGACTAATTCTA 59.011 33.333 0.00 0.00 32.51 2.10
932 1100 8.833493 GCGGCCTAAATTAAAGACTAATTCTAA 58.167 33.333 0.00 0.00 32.51 2.10
959 1127 9.110502 ACTAAAGAAAATAGAAATCGCCTAAGG 57.889 33.333 0.00 0.00 0.00 2.69
960 1128 6.378710 AAGAAAATAGAAATCGCCTAAGGC 57.621 37.500 0.00 0.00 46.75 4.35
979 1147 3.423154 CGTGCGGCCAAGGTCTTC 61.423 66.667 2.24 0.00 0.00 2.87
980 1148 3.056328 GTGCGGCCAAGGTCTTCC 61.056 66.667 2.24 0.00 0.00 3.46
981 1149 4.697756 TGCGGCCAAGGTCTTCCG 62.698 66.667 2.24 6.51 44.29 4.30
982 1150 4.699522 GCGGCCAAGGTCTTCCGT 62.700 66.667 2.24 0.00 43.45 4.69
983 1151 2.975536 CGGCCAAGGTCTTCCGTA 59.024 61.111 2.24 0.00 39.05 4.02
984 1152 1.153628 CGGCCAAGGTCTTCCGTAG 60.154 63.158 2.24 0.00 39.05 3.51
1017 1185 1.285962 AGGATGGATGGGTCAAACCAG 59.714 52.381 0.00 0.00 45.20 4.00
1075 1248 3.561213 CAGAGCATGCAGTCCGCG 61.561 66.667 21.98 0.00 46.97 6.46
1091 1268 1.966451 GCGGTTTCCCACTCACAGG 60.966 63.158 0.00 0.00 0.00 4.00
1101 1278 0.738762 CACTCACAGGCATGACGAGG 60.739 60.000 20.68 10.24 35.28 4.63
1126 1330 2.897641 CTTTGCGCTCCTCCTCCTCG 62.898 65.000 9.73 0.00 0.00 4.63
1399 1630 3.571571 CTCGACCTCAACGATAACAACA 58.428 45.455 0.00 0.00 39.02 3.33
1409 1640 1.006832 GATAACAACATCAGCGGCGT 58.993 50.000 9.37 0.00 0.00 5.68
1416 1647 4.241555 ATCAGCGGCGTCATCCCC 62.242 66.667 9.37 0.00 0.00 4.81
1627 1858 1.523758 CAACTACCTCACCAACCAGC 58.476 55.000 0.00 0.00 0.00 4.85
1669 1903 2.185310 GATGCCCACCGTCACCTTCT 62.185 60.000 0.00 0.00 0.00 2.85
1674 1908 0.393077 CCACCGTCACCTTCTTGTCT 59.607 55.000 0.00 0.00 0.00 3.41
1677 1911 1.341531 ACCGTCACCTTCTTGTCTCTG 59.658 52.381 0.00 0.00 0.00 3.35
1773 2007 3.003763 AACACTCTCTCCGGCCCC 61.004 66.667 0.00 0.00 0.00 5.80
1810 2044 1.597461 GAGAACCTCCCCAACCTCG 59.403 63.158 0.00 0.00 0.00 4.63
1814 2048 2.052047 AACCTCCCCAACCTCGTGTG 62.052 60.000 0.00 0.00 0.00 3.82
1816 2050 2.847234 TCCCCAACCTCGTGTGCT 60.847 61.111 0.00 0.00 0.00 4.40
1829 2063 0.663153 GTGTGCTTCAACCTGTCCAC 59.337 55.000 0.00 0.00 0.00 4.02
1878 2112 0.737367 CGCTGTCGATGCTGGAGAAA 60.737 55.000 10.75 0.00 38.10 2.52
2208 2442 1.069513 TCGAACAAACTCACCGGTCAT 59.930 47.619 2.59 0.00 0.00 3.06
2718 4357 5.088026 GGTCTATACTAGAAAGAGGCCCAT 58.912 45.833 0.00 0.00 36.40 4.00
2839 5103 3.068873 ACCGTTTGAGGCAAGCAATAAAA 59.931 39.130 0.00 0.00 33.69 1.52
2867 5131 0.179000 ATCTTCTGTTGCCCTAGCCG 59.821 55.000 0.00 0.00 38.69 5.52
2868 5132 2.046314 TTCTGTTGCCCTAGCCGC 60.046 61.111 0.00 0.00 38.69 6.53
2875 5139 4.394712 GCCCTAGCCGCCGCATAT 62.395 66.667 0.00 0.00 37.52 1.78
2876 5140 3.014085 GCCCTAGCCGCCGCATATA 62.014 63.158 0.00 0.00 37.52 0.86
2878 5142 0.178068 CCCTAGCCGCCGCATATATT 59.822 55.000 0.00 0.00 37.52 1.28
2879 5143 1.411246 CCCTAGCCGCCGCATATATTA 59.589 52.381 0.00 0.00 37.52 0.98
2987 5483 2.033372 TCCATACAATCTACGCCGGAA 58.967 47.619 5.05 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.034305 AGTAATGTATGGCGACTCCGAC 59.966 50.000 0.00 0.00 46.00 4.79
3 4 2.034179 CAGTAATGTATGGCGACTCCGA 59.966 50.000 0.00 0.00 38.22 4.55
4 5 2.394708 CAGTAATGTATGGCGACTCCG 58.605 52.381 0.00 0.00 37.80 4.63
10 11 1.416401 ACCCTCCAGTAATGTATGGCG 59.584 52.381 0.00 0.00 36.47 5.69
14 15 7.842743 TCACTAAACTACCCTCCAGTAATGTAT 59.157 37.037 0.00 0.00 0.00 2.29
17 18 6.540438 TCACTAAACTACCCTCCAGTAATG 57.460 41.667 0.00 0.00 0.00 1.90
29 30 6.743575 ATGCCAGACAAATCACTAAACTAC 57.256 37.500 0.00 0.00 0.00 2.73
58 59 5.668558 AAGTTTCGTTCTTAATGAAGCGT 57.331 34.783 3.74 0.00 40.98 5.07
60 61 7.679659 AACAAAGTTTCGTTCTTAATGAAGC 57.320 32.000 1.54 1.54 37.67 3.86
87 89 9.308000 TCCCTCAATGTTGAAACAAAATATAGT 57.692 29.630 0.00 0.00 43.03 2.12
99 101 1.075374 CCCCAGTCCCTCAATGTTGAA 59.925 52.381 0.00 0.00 36.64 2.69
119 121 5.049267 TGTTAGCGAAATTACAAACTGTCCC 60.049 40.000 0.00 0.00 0.00 4.46
121 123 9.047871 GTAATGTTAGCGAAATTACAAACTGTC 57.952 33.333 13.97 0.00 36.96 3.51
125 127 8.846607 CAAGGTAATGTTAGCGAAATTACAAAC 58.153 33.333 17.45 7.96 38.13 2.93
142 144 2.415168 CACCAGTACGCACAAGGTAATG 59.585 50.000 2.99 0.00 34.63 1.90
144 146 1.687660 TCACCAGTACGCACAAGGTAA 59.312 47.619 2.99 0.00 34.63 2.85
155 157 9.132521 CAGAAATGAAAAATGATTCACCAGTAC 57.867 33.333 0.00 0.00 41.78 2.73
167 169 7.864379 ACACAAGTAGAGCAGAAATGAAAAATG 59.136 33.333 0.00 0.00 0.00 2.32
195 197 6.749923 TGGAAAAAGGACAAAAACAAATGG 57.250 33.333 0.00 0.00 0.00 3.16
196 198 9.636879 ATTTTGGAAAAAGGACAAAAACAAATG 57.363 25.926 5.99 0.00 44.29 2.32
197 199 9.853555 GATTTTGGAAAAAGGACAAAAACAAAT 57.146 25.926 5.99 0.00 44.29 2.32
199 201 7.361286 CGGATTTTGGAAAAAGGACAAAAACAA 60.361 33.333 5.99 0.00 44.29 2.83
201 203 6.314152 TCGGATTTTGGAAAAAGGACAAAAAC 59.686 34.615 5.99 3.96 44.29 2.43
205 207 5.599999 TTCGGATTTTGGAAAAAGGACAA 57.400 34.783 0.00 0.00 0.00 3.18
206 208 5.799827 ATTCGGATTTTGGAAAAAGGACA 57.200 34.783 0.00 0.00 0.00 4.02
207 209 7.543756 TCATATTCGGATTTTGGAAAAAGGAC 58.456 34.615 0.00 0.00 0.00 3.85
208 210 7.396055 ACTCATATTCGGATTTTGGAAAAAGGA 59.604 33.333 0.00 0.00 0.00 3.36
209 211 7.489113 CACTCATATTCGGATTTTGGAAAAAGG 59.511 37.037 0.00 0.00 0.00 3.11
210 212 7.489113 CCACTCATATTCGGATTTTGGAAAAAG 59.511 37.037 0.00 0.00 0.00 2.27
211 213 7.177568 TCCACTCATATTCGGATTTTGGAAAAA 59.822 33.333 0.00 0.00 0.00 1.94
217 219 5.240183 AGCATCCACTCATATTCGGATTTTG 59.760 40.000 0.00 0.00 36.07 2.44
222 224 2.965147 TCAGCATCCACTCATATTCGGA 59.035 45.455 0.00 0.00 0.00 4.55
224 226 6.335777 TCATATCAGCATCCACTCATATTCG 58.664 40.000 0.00 0.00 0.00 3.34
225 227 8.557592 TTTCATATCAGCATCCACTCATATTC 57.442 34.615 0.00 0.00 0.00 1.75
228 230 8.929260 AAATTTCATATCAGCATCCACTCATA 57.071 30.769 0.00 0.00 0.00 2.15
232 234 7.844009 ACAAAAATTTCATATCAGCATCCACT 58.156 30.769 0.00 0.00 0.00 4.00
247 249 6.037500 AGCAGCTTCAGGAAAACAAAAATTTC 59.962 34.615 0.00 0.00 36.32 2.17
249 251 5.430886 AGCAGCTTCAGGAAAACAAAAATT 58.569 33.333 0.00 0.00 0.00 1.82
250 252 5.027293 AGCAGCTTCAGGAAAACAAAAAT 57.973 34.783 0.00 0.00 0.00 1.82
255 257 2.620115 CAGAAGCAGCTTCAGGAAAACA 59.380 45.455 32.20 0.00 42.37 2.83
256 258 2.880890 TCAGAAGCAGCTTCAGGAAAAC 59.119 45.455 32.20 7.90 42.37 2.43
260 262 1.209019 GGATCAGAAGCAGCTTCAGGA 59.791 52.381 32.20 27.64 42.37 3.86
261 263 1.065636 TGGATCAGAAGCAGCTTCAGG 60.066 52.381 32.20 24.07 42.37 3.86
262 264 2.398252 TGGATCAGAAGCAGCTTCAG 57.602 50.000 32.20 25.80 42.37 3.02
264 266 1.401199 GCTTGGATCAGAAGCAGCTTC 59.599 52.381 25.46 25.46 44.43 3.86
270 272 2.399916 ACTCTGCTTGGATCAGAAGC 57.600 50.000 17.65 17.65 45.12 3.86
281 283 5.828859 ACGTAGTATATCTCCAACTCTGCTT 59.171 40.000 0.00 0.00 41.94 3.91
300 302 2.202623 GTCGCCTGGCAGACGTAG 60.203 66.667 22.28 3.16 0.00 3.51
301 303 2.986979 TGTCGCCTGGCAGACGTA 60.987 61.111 22.28 10.55 35.86 3.57
305 307 1.877576 CTAGTGTGTCGCCTGGCAGA 61.878 60.000 20.29 13.86 0.00 4.26
314 316 1.813178 TGGAGAGCTTCTAGTGTGTCG 59.187 52.381 0.00 0.00 0.00 4.35
321 323 5.047377 AGTTCAAAGACTGGAGAGCTTCTAG 60.047 44.000 7.42 7.42 40.07 2.43
324 326 4.001618 AGTTCAAAGACTGGAGAGCTTC 57.998 45.455 0.00 0.00 0.00 3.86
338 340 8.187913 TCATGTGGGATTTTATCAAGTTCAAA 57.812 30.769 0.00 0.00 0.00 2.69
342 344 9.492973 CTTTTTCATGTGGGATTTTATCAAGTT 57.507 29.630 0.00 0.00 0.00 2.66
344 346 8.096414 ACCTTTTTCATGTGGGATTTTATCAAG 58.904 33.333 0.00 0.00 0.00 3.02
358 360 3.500343 CCCTGGAAGACCTTTTTCATGT 58.500 45.455 0.00 0.00 34.07 3.21
359 361 2.232208 GCCCTGGAAGACCTTTTTCATG 59.768 50.000 0.00 0.00 34.07 3.07
369 371 2.514824 GATGCGGCCCTGGAAGAC 60.515 66.667 0.00 0.00 34.07 3.01
394 396 3.168528 AGGTGTTCTGGCGGTGGT 61.169 61.111 0.00 0.00 0.00 4.16
400 402 1.444119 TTGCGTTGAGGTGTTCTGGC 61.444 55.000 0.00 0.00 0.00 4.85
407 409 2.479837 TGTAAGTCTTGCGTTGAGGTG 58.520 47.619 0.00 0.00 0.00 4.00
410 412 4.627035 TGATGATGTAAGTCTTGCGTTGAG 59.373 41.667 0.00 0.00 0.00 3.02
414 416 5.178061 TGATTGATGATGTAAGTCTTGCGT 58.822 37.500 0.00 0.00 0.00 5.24
419 421 6.238293 CGCATGTTGATTGATGATGTAAGTCT 60.238 38.462 0.00 0.00 0.00 3.24
422 424 5.209977 CCGCATGTTGATTGATGATGTAAG 58.790 41.667 0.00 0.00 0.00 2.34
425 427 2.359848 CCCGCATGTTGATTGATGATGT 59.640 45.455 0.00 0.00 0.00 3.06
428 430 1.744522 CACCCGCATGTTGATTGATGA 59.255 47.619 0.00 0.00 0.00 2.92
429 431 1.202325 CCACCCGCATGTTGATTGATG 60.202 52.381 0.00 0.00 0.00 3.07
430 432 1.105457 CCACCCGCATGTTGATTGAT 58.895 50.000 0.00 0.00 0.00 2.57
431 433 0.251121 ACCACCCGCATGTTGATTGA 60.251 50.000 0.00 0.00 0.00 2.57
432 434 0.109179 CACCACCCGCATGTTGATTG 60.109 55.000 0.00 0.00 0.00 2.67
433 435 1.250154 CCACCACCCGCATGTTGATT 61.250 55.000 0.00 0.00 0.00 2.57
442 444 0.396811 AATATCTAGCCACCACCCGC 59.603 55.000 0.00 0.00 0.00 6.13
444 446 4.386711 GTGTAAATATCTAGCCACCACCC 58.613 47.826 0.00 0.00 0.00 4.61
528 550 3.228188 TGCACTTTGGTCTCCAAGATT 57.772 42.857 1.53 0.00 44.84 2.40
558 682 1.285950 CGTCAGCTCGTTCCAGTCA 59.714 57.895 0.00 0.00 0.00 3.41
590 714 0.622665 CTTCCTTCACCCTGCCATCT 59.377 55.000 0.00 0.00 0.00 2.90
628 788 0.892358 CCAGCAGCTTCTTCCAAGCA 60.892 55.000 8.94 0.00 45.30 3.91
652 812 2.738521 CCTGTCACCACCGCGAAG 60.739 66.667 8.23 0.00 0.00 3.79
653 813 4.308458 CCCTGTCACCACCGCGAA 62.308 66.667 8.23 0.00 0.00 4.70
658 818 4.394712 CTCGCCCCTGTCACCACC 62.395 72.222 0.00 0.00 0.00 4.61
659 819 4.394712 CCTCGCCCCTGTCACCAC 62.395 72.222 0.00 0.00 0.00 4.16
672 832 4.436998 GTCACCACCTCGCCCTCG 62.437 72.222 0.00 0.00 0.00 4.63
673 833 3.302347 CTGTCACCACCTCGCCCTC 62.302 68.421 0.00 0.00 0.00 4.30
674 834 3.314331 CTGTCACCACCTCGCCCT 61.314 66.667 0.00 0.00 0.00 5.19
675 835 4.394712 CCTGTCACCACCTCGCCC 62.395 72.222 0.00 0.00 0.00 6.13
676 836 4.394712 CCCTGTCACCACCTCGCC 62.395 72.222 0.00 0.00 0.00 5.54
677 837 3.626924 ACCCTGTCACCACCTCGC 61.627 66.667 0.00 0.00 0.00 5.03
678 838 1.754380 TTCACCCTGTCACCACCTCG 61.754 60.000 0.00 0.00 0.00 4.63
679 839 0.035458 CTTCACCCTGTCACCACCTC 59.965 60.000 0.00 0.00 0.00 3.85
680 840 1.418908 CCTTCACCCTGTCACCACCT 61.419 60.000 0.00 0.00 0.00 4.00
681 841 1.073199 CCTTCACCCTGTCACCACC 59.927 63.158 0.00 0.00 0.00 4.61
682 842 0.472471 TTCCTTCACCCTGTCACCAC 59.528 55.000 0.00 0.00 0.00 4.16
683 843 0.764890 CTTCCTTCACCCTGTCACCA 59.235 55.000 0.00 0.00 0.00 4.17
684 844 0.036875 CCTTCCTTCACCCTGTCACC 59.963 60.000 0.00 0.00 0.00 4.02
685 845 1.056660 TCCTTCCTTCACCCTGTCAC 58.943 55.000 0.00 0.00 0.00 3.67
686 846 1.699634 CTTCCTTCCTTCACCCTGTCA 59.300 52.381 0.00 0.00 0.00 3.58
687 847 1.003696 CCTTCCTTCCTTCACCCTGTC 59.996 57.143 0.00 0.00 0.00 3.51
688 848 1.068121 CCTTCCTTCCTTCACCCTGT 58.932 55.000 0.00 0.00 0.00 4.00
689 849 1.362224 TCCTTCCTTCCTTCACCCTG 58.638 55.000 0.00 0.00 0.00 4.45
690 850 1.988846 CTTCCTTCCTTCCTTCACCCT 59.011 52.381 0.00 0.00 0.00 4.34
691 851 1.004862 CCTTCCTTCCTTCCTTCACCC 59.995 57.143 0.00 0.00 0.00 4.61
692 852 1.985895 TCCTTCCTTCCTTCCTTCACC 59.014 52.381 0.00 0.00 0.00 4.02
693 853 3.328050 TCTTCCTTCCTTCCTTCCTTCAC 59.672 47.826 0.00 0.00 0.00 3.18
694 854 3.584848 CTCTTCCTTCCTTCCTTCCTTCA 59.415 47.826 0.00 0.00 0.00 3.02
695 855 3.841255 TCTCTTCCTTCCTTCCTTCCTTC 59.159 47.826 0.00 0.00 0.00 3.46
696 856 3.875571 TCTCTTCCTTCCTTCCTTCCTT 58.124 45.455 0.00 0.00 0.00 3.36
697 857 3.569135 TCTCTTCCTTCCTTCCTTCCT 57.431 47.619 0.00 0.00 0.00 3.36
698 858 4.522114 CAATCTCTTCCTTCCTTCCTTCC 58.478 47.826 0.00 0.00 0.00 3.46
699 859 4.226168 TCCAATCTCTTCCTTCCTTCCTTC 59.774 45.833 0.00 0.00 0.00 3.46
700 860 4.179133 TCCAATCTCTTCCTTCCTTCCTT 58.821 43.478 0.00 0.00 0.00 3.36
701 861 3.808189 TCCAATCTCTTCCTTCCTTCCT 58.192 45.455 0.00 0.00 0.00 3.36
702 862 4.787135 ATCCAATCTCTTCCTTCCTTCC 57.213 45.455 0.00 0.00 0.00 3.46
703 863 5.163571 GCAAATCCAATCTCTTCCTTCCTTC 60.164 44.000 0.00 0.00 0.00 3.46
704 864 4.708909 GCAAATCCAATCTCTTCCTTCCTT 59.291 41.667 0.00 0.00 0.00 3.36
705 865 4.264083 TGCAAATCCAATCTCTTCCTTCCT 60.264 41.667 0.00 0.00 0.00 3.36
706 866 4.019174 TGCAAATCCAATCTCTTCCTTCC 58.981 43.478 0.00 0.00 0.00 3.46
707 867 5.649782 TTGCAAATCCAATCTCTTCCTTC 57.350 39.130 0.00 0.00 0.00 3.46
708 868 6.664816 TGTATTGCAAATCCAATCTCTTCCTT 59.335 34.615 1.71 0.00 36.80 3.36
709 869 6.189859 TGTATTGCAAATCCAATCTCTTCCT 58.810 36.000 1.71 0.00 36.80 3.36
710 870 6.455360 TGTATTGCAAATCCAATCTCTTCC 57.545 37.500 1.71 0.00 36.80 3.46
711 871 7.490402 CCTTTGTATTGCAAATCCAATCTCTTC 59.510 37.037 1.71 0.00 45.00 2.87
712 872 7.325694 CCTTTGTATTGCAAATCCAATCTCTT 58.674 34.615 1.71 0.00 45.00 2.85
713 873 6.127253 CCCTTTGTATTGCAAATCCAATCTCT 60.127 38.462 1.71 0.00 45.00 3.10
714 874 6.044682 CCCTTTGTATTGCAAATCCAATCTC 58.955 40.000 1.71 0.00 45.00 2.75
715 875 5.721000 TCCCTTTGTATTGCAAATCCAATCT 59.279 36.000 1.71 0.00 45.00 2.40
716 876 5.976458 TCCCTTTGTATTGCAAATCCAATC 58.024 37.500 1.71 0.00 45.00 2.67
717 877 6.350906 CATCCCTTTGTATTGCAAATCCAAT 58.649 36.000 1.71 0.00 45.00 3.16
718 878 5.338219 CCATCCCTTTGTATTGCAAATCCAA 60.338 40.000 1.71 3.90 45.00 3.53
719 879 4.161942 CCATCCCTTTGTATTGCAAATCCA 59.838 41.667 1.71 0.00 45.00 3.41
720 880 4.405358 TCCATCCCTTTGTATTGCAAATCC 59.595 41.667 1.71 0.00 45.00 3.01
721 881 5.596836 TCCATCCCTTTGTATTGCAAATC 57.403 39.130 1.71 0.00 45.00 2.17
722 882 5.901276 AGATCCATCCCTTTGTATTGCAAAT 59.099 36.000 1.71 0.00 45.00 2.32
723 883 5.127519 CAGATCCATCCCTTTGTATTGCAAA 59.872 40.000 1.71 0.00 44.05 3.68
724 884 4.646040 CAGATCCATCCCTTTGTATTGCAA 59.354 41.667 0.00 0.00 34.87 4.08
725 885 4.209538 CAGATCCATCCCTTTGTATTGCA 58.790 43.478 0.00 0.00 0.00 4.08
726 886 4.210331 ACAGATCCATCCCTTTGTATTGC 58.790 43.478 0.00 0.00 0.00 3.56
727 887 6.406177 CCAAACAGATCCATCCCTTTGTATTG 60.406 42.308 0.00 0.00 0.00 1.90
728 888 5.658190 CCAAACAGATCCATCCCTTTGTATT 59.342 40.000 0.00 0.00 0.00 1.89
729 889 5.203528 CCAAACAGATCCATCCCTTTGTAT 58.796 41.667 0.00 0.00 0.00 2.29
730 890 4.044065 ACCAAACAGATCCATCCCTTTGTA 59.956 41.667 0.00 0.00 0.00 2.41
731 891 3.181418 ACCAAACAGATCCATCCCTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
732 892 3.194116 CACCAAACAGATCCATCCCTTTG 59.806 47.826 0.00 0.00 0.00 2.77
733 893 3.434309 CACCAAACAGATCCATCCCTTT 58.566 45.455 0.00 0.00 0.00 3.11
734 894 2.885554 GCACCAAACAGATCCATCCCTT 60.886 50.000 0.00 0.00 0.00 3.95
735 895 1.341383 GCACCAAACAGATCCATCCCT 60.341 52.381 0.00 0.00 0.00 4.20
736 896 1.106285 GCACCAAACAGATCCATCCC 58.894 55.000 0.00 0.00 0.00 3.85
737 897 1.474077 GTGCACCAAACAGATCCATCC 59.526 52.381 5.22 0.00 0.00 3.51
738 898 2.161855 TGTGCACCAAACAGATCCATC 58.838 47.619 15.69 0.00 0.00 3.51
739 899 2.165167 CTGTGCACCAAACAGATCCAT 58.835 47.619 15.69 0.00 46.55 3.41
740 900 1.608055 CTGTGCACCAAACAGATCCA 58.392 50.000 15.69 0.00 46.55 3.41
741 901 0.242017 GCTGTGCACCAAACAGATCC 59.758 55.000 15.69 0.00 46.55 3.36
742 902 0.953727 TGCTGTGCACCAAACAGATC 59.046 50.000 15.69 0.00 46.55 2.75
743 903 3.114527 TGCTGTGCACCAAACAGAT 57.885 47.368 15.69 0.00 46.55 2.90
744 904 4.653893 TGCTGTGCACCAAACAGA 57.346 50.000 15.69 0.00 46.55 3.41
753 913 3.112842 CAAGTGCTGTGCTGTGCA 58.887 55.556 0.00 0.00 36.79 4.57
754 914 2.354305 GCAAGTGCTGTGCTGTGC 60.354 61.111 0.00 0.00 39.00 4.57
764 924 1.308783 GGCCTCTTGGTAGCAAGTGC 61.309 60.000 28.63 28.27 37.16 4.40
765 925 1.021390 CGGCCTCTTGGTAGCAAGTG 61.021 60.000 28.63 25.87 35.27 3.16
766 926 1.192146 TCGGCCTCTTGGTAGCAAGT 61.192 55.000 28.63 0.00 35.27 3.16
851 1019 6.861065 TTTGAACTTGTGAAGTCATAGTCC 57.139 37.500 0.00 0.00 41.91 3.85
863 1031 5.649782 AGGCCAAGATATTTGAACTTGTG 57.350 39.130 5.01 0.00 39.19 3.33
864 1032 6.152831 GGTTAGGCCAAGATATTTGAACTTGT 59.847 38.462 5.01 0.00 39.19 3.16
865 1033 6.378280 AGGTTAGGCCAAGATATTTGAACTTG 59.622 38.462 5.01 0.00 40.61 3.16
866 1034 6.494059 AGGTTAGGCCAAGATATTTGAACTT 58.506 36.000 5.01 0.00 40.61 2.66
867 1035 6.079712 AGGTTAGGCCAAGATATTTGAACT 57.920 37.500 5.01 0.00 40.61 3.01
868 1036 7.875327 TTAGGTTAGGCCAAGATATTTGAAC 57.125 36.000 5.01 0.00 40.61 3.18
869 1037 9.487442 AAATTAGGTTAGGCCAAGATATTTGAA 57.513 29.630 5.01 0.00 40.61 2.69
870 1038 8.912988 CAAATTAGGTTAGGCCAAGATATTTGA 58.087 33.333 5.01 0.00 40.61 2.69
871 1039 8.695456 ACAAATTAGGTTAGGCCAAGATATTTG 58.305 33.333 5.01 13.55 40.61 2.32
872 1040 8.838649 ACAAATTAGGTTAGGCCAAGATATTT 57.161 30.769 5.01 0.00 40.61 1.40
873 1041 9.574516 CTACAAATTAGGTTAGGCCAAGATATT 57.425 33.333 5.01 0.00 40.61 1.28
874 1042 8.945193 TCTACAAATTAGGTTAGGCCAAGATAT 58.055 33.333 5.01 0.00 40.61 1.63
875 1043 8.326765 TCTACAAATTAGGTTAGGCCAAGATA 57.673 34.615 5.01 0.00 40.61 1.98
876 1044 7.208064 TCTACAAATTAGGTTAGGCCAAGAT 57.792 36.000 5.01 0.00 40.61 2.40
877 1045 6.630203 TCTACAAATTAGGTTAGGCCAAGA 57.370 37.500 5.01 0.00 40.61 3.02
878 1046 7.362660 GGTTTCTACAAATTAGGTTAGGCCAAG 60.363 40.741 5.01 0.00 40.61 3.61
879 1047 6.434965 GGTTTCTACAAATTAGGTTAGGCCAA 59.565 38.462 5.01 0.00 40.61 4.52
880 1048 5.947566 GGTTTCTACAAATTAGGTTAGGCCA 59.052 40.000 5.01 0.00 40.61 5.36
881 1049 6.095021 CAGGTTTCTACAAATTAGGTTAGGCC 59.905 42.308 0.00 0.00 37.58 5.19
882 1050 6.404403 GCAGGTTTCTACAAATTAGGTTAGGC 60.404 42.308 0.00 0.00 0.00 3.93
883 1051 6.183360 CGCAGGTTTCTACAAATTAGGTTAGG 60.183 42.308 0.00 0.00 0.00 2.69
884 1052 6.772078 CGCAGGTTTCTACAAATTAGGTTAG 58.228 40.000 0.00 0.00 0.00 2.34
885 1053 6.730960 CGCAGGTTTCTACAAATTAGGTTA 57.269 37.500 0.00 0.00 0.00 2.85
886 1054 5.622770 CGCAGGTTTCTACAAATTAGGTT 57.377 39.130 0.00 0.00 0.00 3.50
904 1072 6.619801 ATTAGTCTTTAATTTAGGCCGCAG 57.380 37.500 0.00 0.00 0.00 5.18
905 1073 6.826741 AGAATTAGTCTTTAATTTAGGCCGCA 59.173 34.615 0.00 0.00 29.66 5.69
906 1074 7.260558 AGAATTAGTCTTTAATTTAGGCCGC 57.739 36.000 0.00 0.00 29.66 6.53
933 1101 9.110502 CCTTAGGCGATTTCTATTTTCTTTAGT 57.889 33.333 0.00 0.00 0.00 2.24
934 1102 8.070769 GCCTTAGGCGATTTCTATTTTCTTTAG 58.929 37.037 7.77 0.00 39.62 1.85
935 1103 7.927048 GCCTTAGGCGATTTCTATTTTCTTTA 58.073 34.615 7.77 0.00 39.62 1.85
936 1104 6.796426 GCCTTAGGCGATTTCTATTTTCTTT 58.204 36.000 7.77 0.00 39.62 2.52
937 1105 6.378710 GCCTTAGGCGATTTCTATTTTCTT 57.621 37.500 7.77 0.00 39.62 2.52
962 1130 3.423154 GAAGACCTTGGCCGCACG 61.423 66.667 0.00 0.00 0.00 5.34
963 1131 3.056328 GGAAGACCTTGGCCGCAC 61.056 66.667 0.00 0.00 0.00 5.34
964 1132 4.697756 CGGAAGACCTTGGCCGCA 62.698 66.667 0.00 0.00 37.08 5.69
967 1135 1.221021 CCTACGGAAGACCTTGGCC 59.779 63.158 0.00 0.00 0.00 5.36
968 1136 0.175989 CTCCTACGGAAGACCTTGGC 59.824 60.000 0.00 0.00 0.00 4.52
969 1137 0.175989 GCTCCTACGGAAGACCTTGG 59.824 60.000 0.00 0.00 0.00 3.61
970 1138 1.135333 GAGCTCCTACGGAAGACCTTG 59.865 57.143 0.87 0.00 0.00 3.61
971 1139 1.476477 GAGCTCCTACGGAAGACCTT 58.524 55.000 0.87 0.00 0.00 3.50
972 1140 0.748729 CGAGCTCCTACGGAAGACCT 60.749 60.000 8.47 0.00 0.00 3.85
973 1141 0.747283 TCGAGCTCCTACGGAAGACC 60.747 60.000 8.47 0.00 0.00 3.85
974 1142 1.064357 CTTCGAGCTCCTACGGAAGAC 59.936 57.143 18.26 0.00 0.00 3.01
975 1143 1.380524 CTTCGAGCTCCTACGGAAGA 58.619 55.000 18.26 1.69 0.00 2.87
976 1144 0.382515 CCTTCGAGCTCCTACGGAAG 59.617 60.000 16.87 16.87 0.00 3.46
977 1145 0.034767 TCCTTCGAGCTCCTACGGAA 60.035 55.000 8.47 4.50 0.00 4.30
978 1146 0.034767 TTCCTTCGAGCTCCTACGGA 60.035 55.000 8.47 6.50 0.00 4.69
979 1147 0.382515 CTTCCTTCGAGCTCCTACGG 59.617 60.000 8.47 4.04 0.00 4.02
980 1148 0.382515 CCTTCCTTCGAGCTCCTACG 59.617 60.000 8.47 0.00 0.00 3.51
981 1149 1.765230 TCCTTCCTTCGAGCTCCTAC 58.235 55.000 8.47 0.00 0.00 3.18
982 1150 2.311463 CATCCTTCCTTCGAGCTCCTA 58.689 52.381 8.47 0.00 0.00 2.94
983 1151 1.118838 CATCCTTCCTTCGAGCTCCT 58.881 55.000 8.47 0.00 0.00 3.69
984 1152 0.105778 CCATCCTTCCTTCGAGCTCC 59.894 60.000 8.47 0.00 0.00 4.70
985 1153 1.115467 TCCATCCTTCCTTCGAGCTC 58.885 55.000 2.73 2.73 0.00 4.09
986 1154 1.415659 CATCCATCCTTCCTTCGAGCT 59.584 52.381 0.00 0.00 0.00 4.09
987 1155 1.542108 CCATCCATCCTTCCTTCGAGC 60.542 57.143 0.00 0.00 0.00 5.03
988 1156 1.071385 CCCATCCATCCTTCCTTCGAG 59.929 57.143 0.00 0.00 0.00 4.04
989 1157 1.131638 CCCATCCATCCTTCCTTCGA 58.868 55.000 0.00 0.00 0.00 3.71
990 1158 0.839946 ACCCATCCATCCTTCCTTCG 59.160 55.000 0.00 0.00 0.00 3.79
991 1159 1.846439 TGACCCATCCATCCTTCCTTC 59.154 52.381 0.00 0.00 0.00 3.46
992 1160 1.985622 TGACCCATCCATCCTTCCTT 58.014 50.000 0.00 0.00 0.00 3.36
993 1161 1.985622 TTGACCCATCCATCCTTCCT 58.014 50.000 0.00 0.00 0.00 3.36
994 1162 2.379005 GTTTGACCCATCCATCCTTCC 58.621 52.381 0.00 0.00 0.00 3.46
995 1163 2.291540 TGGTTTGACCCATCCATCCTTC 60.292 50.000 0.00 0.00 37.50 3.46
996 1164 1.715931 TGGTTTGACCCATCCATCCTT 59.284 47.619 0.00 0.00 37.50 3.36
997 1165 1.285962 CTGGTTTGACCCATCCATCCT 59.714 52.381 0.00 0.00 37.50 3.24
1017 1185 3.265791 CTGGAGCATAATATTCGCCCTC 58.734 50.000 6.24 2.66 0.00 4.30
1077 1250 0.770499 TCATGCCTGTGAGTGGGAAA 59.230 50.000 0.00 0.00 0.00 3.13
1105 1282 2.821810 GAGGAGGAGCGCAAAGGC 60.822 66.667 11.47 0.00 0.00 4.35
1109 1286 3.452786 CGAGGAGGAGGAGCGCAA 61.453 66.667 11.47 0.00 0.00 4.85
1110 1287 4.742649 ACGAGGAGGAGGAGCGCA 62.743 66.667 11.47 0.00 0.00 6.09
1163 1370 4.742201 GAAGAGCGTCGGCCTGCA 62.742 66.667 13.09 0.00 41.24 4.41
1399 1630 4.241555 GGGGATGACGCCGCTGAT 62.242 66.667 0.00 0.00 39.24 2.90
1409 1640 4.841617 AGAGGCTCGCGGGGATGA 62.842 66.667 8.71 0.00 0.00 2.92
1627 1858 0.389948 GTGAACCTGCGGTAGTCCTG 60.390 60.000 0.62 0.00 33.12 3.86
1669 1903 4.737578 AGGTAGTTGAGGTACAGAGACAA 58.262 43.478 0.00 0.00 0.00 3.18
1674 1908 3.504906 CGTTGAGGTAGTTGAGGTACAGA 59.495 47.826 0.00 0.00 0.00 3.41
1677 1911 2.673326 GCCGTTGAGGTAGTTGAGGTAC 60.673 54.545 0.00 0.00 43.70 3.34
1773 2007 2.310233 CGGCAGCGATTCCGGTATG 61.310 63.158 3.12 0.00 45.57 2.39
1810 2044 0.663153 GTGGACAGGTTGAAGCACAC 59.337 55.000 0.00 0.00 0.00 3.82
1814 2048 1.270550 CATTGGTGGACAGGTTGAAGC 59.729 52.381 0.00 0.00 0.00 3.86
1816 2050 1.327303 GCATTGGTGGACAGGTTGAA 58.673 50.000 0.00 0.00 0.00 2.69
2208 2442 5.021033 TCGTAAATAAAGCCGGTGGAATA 57.979 39.130 1.90 0.00 0.00 1.75
2317 2551 5.645067 TGTTGCTGAAGAGATACAGGATTTG 59.355 40.000 0.00 0.00 34.77 2.32
2438 2672 0.886490 CTGCTTGAGGTTGCCGAACT 60.886 55.000 0.00 0.00 32.15 3.01
2704 4343 2.528134 CCCGATGGGCCTCTTTCTA 58.472 57.895 4.53 0.00 35.35 2.10
2718 4357 1.626825 GCCCCTAATACTAATGCCCGA 59.373 52.381 0.00 0.00 0.00 5.14
2807 5071 2.812011 GCCTCAAACGGTGTCTTACAAT 59.188 45.455 0.00 0.00 0.00 2.71
2839 5103 9.454859 GCTAGGGCAACAGAAGATTATAATATT 57.545 33.333 5.03 5.03 38.54 1.28
2862 5126 2.380941 TCCTAATATATGCGGCGGCTA 58.619 47.619 17.76 7.71 40.82 3.93
2863 5127 1.191535 TCCTAATATATGCGGCGGCT 58.808 50.000 17.76 5.71 40.82 5.52
2864 5128 1.664151 GTTCCTAATATATGCGGCGGC 59.336 52.381 9.78 9.68 40.52 6.53
2867 5131 3.629142 AGGGTTCCTAATATATGCGGC 57.371 47.619 0.00 0.00 28.47 6.53
2868 5132 4.443034 GGCTAGGGTTCCTAATATATGCGG 60.443 50.000 0.00 0.00 35.49 5.69
2870 5134 4.694339 CGGCTAGGGTTCCTAATATATGC 58.306 47.826 0.00 0.00 35.49 3.14
2871 5135 4.443034 GGCGGCTAGGGTTCCTAATATATG 60.443 50.000 0.00 0.00 35.49 1.78
2874 5138 1.907255 GGCGGCTAGGGTTCCTAATAT 59.093 52.381 0.00 0.00 35.49 1.28
2875 5139 1.345063 GGCGGCTAGGGTTCCTAATA 58.655 55.000 0.00 0.00 35.49 0.98
2876 5140 1.755393 CGGCGGCTAGGGTTCCTAAT 61.755 60.000 7.61 0.00 35.49 1.73
2878 5142 2.836360 CGGCGGCTAGGGTTCCTA 60.836 66.667 7.61 0.00 34.61 2.94
2987 5483 1.075450 CTAGGGTTCCTACCGGGCT 60.075 63.158 6.32 0.00 46.04 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.