Multiple sequence alignment - TraesCS4D01G365100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G365100 chr4D 100.000 4584 0 0 1432 6015 509477599 509482182 0.000000e+00 8466.0
1 TraesCS4D01G365100 chr4D 100.000 1144 0 0 1 1144 509476168 509477311 0.000000e+00 2113.0
2 TraesCS4D01G365100 chr4D 80.575 1148 170 35 3532 4642 509509012 509510143 0.000000e+00 835.0
3 TraesCS4D01G365100 chr4D 85.011 447 47 8 5576 6012 509534386 509534822 2.570000e-118 436.0
4 TraesCS4D01G365100 chr4D 87.188 320 30 8 4288 4603 509534075 509534387 2.670000e-93 353.0
5 TraesCS4D01G365100 chr4D 81.570 293 51 1 5726 6015 509518873 509518581 7.790000e-59 239.0
6 TraesCS4D01G365100 chr4D 86.928 153 17 1 465 617 67340784 67340933 1.040000e-37 169.0
7 TraesCS4D01G365100 chr5A 94.688 3972 150 21 1432 5375 698355793 698359731 0.000000e+00 6109.0
8 TraesCS4D01G365100 chr5A 96.320 462 16 1 5554 6015 698359941 698360401 0.000000e+00 758.0
9 TraesCS4D01G365100 chr5A 85.649 439 52 5 5576 6012 698448174 698448603 9.190000e-123 451.0
10 TraesCS4D01G365100 chr5A 84.719 445 51 6 5576 6015 698370775 698371207 4.310000e-116 429.0
11 TraesCS4D01G365100 chr5A 84.282 439 58 5 5576 6012 698482059 698482488 9.320000e-113 418.0
12 TraesCS4D01G365100 chr5A 83.784 444 54 7 5576 6015 698453367 698453796 7.260000e-109 405.0
13 TraesCS4D01G365100 chr5A 92.565 269 16 4 4257 4523 698452287 698452553 3.400000e-102 383.0
14 TraesCS4D01G365100 chr5A 79.773 529 75 18 3537 4053 698465615 698466123 7.410000e-94 355.0
15 TraesCS4D01G365100 chr5A 80.828 459 64 13 4160 4603 698481611 698482060 7.470000e-89 339.0
16 TraesCS4D01G365100 chr5A 89.952 209 13 4 276 477 698355226 698355433 4.620000e-66 263.0
17 TraesCS4D01G365100 chr5A 97.030 101 3 0 5454 5554 698359736 698359836 2.880000e-38 171.0
18 TraesCS4D01G365100 chr5A 97.222 36 0 1 7 42 368104808 368104774 6.510000e-05 60.2
19 TraesCS4D01G365100 chr4B 95.650 2046 64 8 1432 3453 657277746 657275702 0.000000e+00 3262.0
20 TraesCS4D01G365100 chr4B 95.367 2029 68 9 3300 5313 657275685 657273668 0.000000e+00 3203.0
21 TraesCS4D01G365100 chr4B 94.667 675 21 7 5355 6015 657273673 657273000 0.000000e+00 1033.0
22 TraesCS4D01G365100 chr4B 86.788 439 47 6 5579 6015 657245947 657245518 4.220000e-131 479.0
23 TraesCS4D01G365100 chr4B 79.487 390 58 13 5640 6012 657252214 657252598 2.150000e-64 257.0
24 TraesCS4D01G365100 chr4B 76.792 293 37 9 4575 4846 657256250 657255968 1.050000e-27 135.0
25 TraesCS4D01G365100 chr4B 98.462 65 1 0 1080 1144 657277892 657277828 1.370000e-21 115.0
26 TraesCS4D01G365100 chr4B 97.222 36 0 1 7 42 516968564 516968598 6.510000e-05 60.2
27 TraesCS4D01G365100 chr2D 96.763 278 7 1 1 276 587104265 587104542 4.250000e-126 462.0
28 TraesCS4D01G365100 chr3A 78.745 701 65 38 1568 2262 13250637 13251259 5.650000e-105 392.0
29 TraesCS4D01G365100 chr3A 95.238 231 6 1 53 278 472571065 472570835 1.590000e-95 361.0
30 TraesCS4D01G365100 chr3A 76.423 492 56 33 1778 2265 457921990 457921555 1.700000e-50 211.0
31 TraesCS4D01G365100 chr3A 95.146 103 4 1 1 103 472571164 472571063 1.730000e-35 161.0
32 TraesCS4D01G365100 chr3D 78.125 704 69 35 1568 2265 41605681 41605057 9.520000e-98 368.0
33 TraesCS4D01G365100 chr6D 80.894 492 57 15 1587 2075 413807581 413807124 2.670000e-93 353.0
34 TraesCS4D01G365100 chr6D 86.928 153 17 1 465 617 346415373 346415522 1.040000e-37 169.0
35 TraesCS4D01G365100 chr7A 94.323 229 8 1 53 276 28305846 28305618 4.460000e-91 346.0
36 TraesCS4D01G365100 chr7A 76.705 704 63 42 1568 2265 14201172 14200564 1.270000e-76 298.0
37 TraesCS4D01G365100 chr7A 96.117 103 4 0 1 103 28305946 28305844 1.040000e-37 169.0
38 TraesCS4D01G365100 chr7A 86.585 82 7 3 1496 1575 156529957 156529878 2.990000e-13 87.9
39 TraesCS4D01G365100 chr5B 77.318 701 69 40 1568 2262 571828183 571828799 1.250000e-86 331.0
40 TraesCS4D01G365100 chr5B 87.075 294 26 5 438 728 43912672 43912956 7.520000e-84 322.0
41 TraesCS4D01G365100 chr5B 81.855 248 41 3 370 617 677128154 677127911 7.900000e-49 206.0
42 TraesCS4D01G365100 chr5B 87.879 165 14 1 284 442 43911985 43912149 7.960000e-44 189.0
43 TraesCS4D01G365100 chr5B 90.000 150 10 2 438 585 43913545 43913691 7.960000e-44 189.0
44 TraesCS4D01G365100 chr5B 81.988 161 18 5 465 617 74157199 74157356 6.330000e-25 126.0
45 TraesCS4D01G365100 chr5D 78.125 544 57 28 1568 2108 499290491 499290007 7.630000e-74 289.0
46 TraesCS4D01G365100 chr5D 83.700 227 34 2 391 617 536423590 536423367 1.700000e-50 211.0
47 TraesCS4D01G365100 chr5D 86.928 153 17 1 465 617 87465784 87465635 1.040000e-37 169.0
48 TraesCS4D01G365100 chr5D 85.430 151 19 1 467 617 269245405 269245258 2.900000e-33 154.0
49 TraesCS4D01G365100 chr6A 76.391 665 76 42 1604 2266 73447343 73447928 3.550000e-72 283.0
50 TraesCS4D01G365100 chr1B 86.275 153 18 1 465 617 612191300 612191449 4.820000e-36 163.0
51 TraesCS4D01G365100 chr4A 94.444 90 4 1 49 137 117275440 117275529 2.920000e-28 137.0
52 TraesCS4D01G365100 chr4A 100.000 50 0 0 231 280 583190377 583190426 6.420000e-15 93.5
53 TraesCS4D01G365100 chr4A 96.000 50 2 0 1 50 117275328 117275377 1.390000e-11 82.4
54 TraesCS4D01G365100 chr6B 78.774 212 35 9 407 617 29062789 29062587 3.780000e-27 134.0
55 TraesCS4D01G365100 chr7D 100.000 49 0 0 231 279 82724722 82724770 2.310000e-14 91.6
56 TraesCS4D01G365100 chr3B 100.000 49 0 0 231 279 745175054 745175006 2.310000e-14 91.6
57 TraesCS4D01G365100 chr1D 93.333 60 4 0 221 280 406819149 406819208 8.300000e-14 89.8
58 TraesCS4D01G365100 chr7B 96.296 54 0 2 230 282 602571754 602571702 2.990000e-13 87.9
59 TraesCS4D01G365100 chr1A 97.917 48 1 0 231 278 33754451 33754404 3.860000e-12 84.2
60 TraesCS4D01G365100 chr2B 97.222 36 0 1 7 42 460483284 460483318 6.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G365100 chr4D 509476168 509482182 6014 False 5289.500000 8466 100.000000 1 6015 2 chr4D.!!$F3 6014
1 TraesCS4D01G365100 chr4D 509509012 509510143 1131 False 835.000000 835 80.575000 3532 4642 1 chr4D.!!$F2 1110
2 TraesCS4D01G365100 chr4D 509534075 509534822 747 False 394.500000 436 86.099500 4288 6012 2 chr4D.!!$F4 1724
3 TraesCS4D01G365100 chr5A 698355226 698360401 5175 False 1825.250000 6109 94.497500 276 6015 4 chr5A.!!$F3 5739
4 TraesCS4D01G365100 chr5A 698448174 698453796 5622 False 413.000000 451 87.332667 4257 6015 3 chr5A.!!$F4 1758
5 TraesCS4D01G365100 chr5A 698481611 698482488 877 False 378.500000 418 82.555000 4160 6012 2 chr5A.!!$F5 1852
6 TraesCS4D01G365100 chr5A 698465615 698466123 508 False 355.000000 355 79.773000 3537 4053 1 chr5A.!!$F2 516
7 TraesCS4D01G365100 chr4B 657273000 657277892 4892 True 1903.250000 3262 96.036500 1080 6015 4 chr4B.!!$R3 4935
8 TraesCS4D01G365100 chr3A 13250637 13251259 622 False 392.000000 392 78.745000 1568 2262 1 chr3A.!!$F1 694
9 TraesCS4D01G365100 chr3D 41605057 41605681 624 True 368.000000 368 78.125000 1568 2265 1 chr3D.!!$R1 697
10 TraesCS4D01G365100 chr7A 14200564 14201172 608 True 298.000000 298 76.705000 1568 2265 1 chr7A.!!$R1 697
11 TraesCS4D01G365100 chr5B 571828183 571828799 616 False 331.000000 331 77.318000 1568 2262 1 chr5B.!!$F2 694
12 TraesCS4D01G365100 chr5B 43911985 43913691 1706 False 233.333333 322 88.318000 284 728 3 chr5B.!!$F3 444
13 TraesCS4D01G365100 chr6A 73447343 73447928 585 False 283.000000 283 76.391000 1604 2266 1 chr6A.!!$F1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 1299 0.034896 CCAACCCAGACGTGCTACTT 59.965 55.0 0.00 0.0 0.00 2.24 F
766 1302 0.034896 ACCCAGACGTGCTACTTTGG 59.965 55.0 0.00 0.0 0.00 3.28 F
768 1304 0.034896 CCAGACGTGCTACTTTGGGT 59.965 55.0 0.00 0.0 0.00 4.51 F
2150 2741 0.457851 AGCTGCTCGTCATGTACCTC 59.542 55.0 0.00 0.0 0.00 3.85 F
2932 3543 0.934496 TTGCTGTTCTTGTTCGGTCG 59.066 50.0 0.00 0.0 0.00 4.79 F
4411 6332 0.107993 TGAAGCTGCTTCTGATCCGG 60.108 55.0 34.44 0.0 40.73 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2186 2781 0.173481 TCCTCGCTGTCATTCCTTCG 59.827 55.000 0.00 0.00 0.00 3.79 R
2546 3141 2.099592 GAGCACTGAGGAGACATCAGAG 59.900 54.545 17.85 12.04 45.80 3.35 R
2772 3367 8.237267 GCAAAACATGTACTGAGCTAGTAAAAT 58.763 33.333 0.00 0.00 43.24 1.82 R
3585 4370 2.777832 AGAAGATCCACCAGTTCTGC 57.222 50.000 0.00 0.00 0.00 4.26 R
4507 6752 1.226773 GTGGATGCCTTCAATGCGC 60.227 57.895 0.00 0.00 0.00 6.09 R
5981 8517 1.372501 AACAATCACCTACAGGGCCT 58.627 50.000 0.00 0.00 40.27 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.125912 CAGTCGTGGGAGGAAGCG 60.126 66.667 0.00 0.00 0.00 4.68
18 19 3.382832 AGTCGTGGGAGGAAGCGG 61.383 66.667 0.00 0.00 0.00 5.52
19 20 4.452733 GTCGTGGGAGGAAGCGGG 62.453 72.222 0.00 0.00 0.00 6.13
37 38 4.436998 CGCGTGGTGGAGGAGGAC 62.437 72.222 0.00 0.00 0.00 3.85
38 39 4.083862 GCGTGGTGGAGGAGGACC 62.084 72.222 0.00 0.00 0.00 4.46
39 40 3.760035 CGTGGTGGAGGAGGACCG 61.760 72.222 0.00 0.00 41.83 4.79
41 42 2.037367 TGGTGGAGGAGGACCGAG 59.963 66.667 0.00 0.00 41.83 4.63
42 43 2.359404 GGTGGAGGAGGACCGAGA 59.641 66.667 0.00 0.00 41.83 4.04
44 45 1.110518 GGTGGAGGAGGACCGAGATC 61.111 65.000 0.00 0.00 41.83 2.75
45 46 1.152943 TGGAGGAGGACCGAGATCG 60.153 63.158 0.00 0.00 41.83 3.69
47 48 0.887387 GGAGGAGGACCGAGATCGAG 60.887 65.000 3.31 0.00 43.02 4.04
48 49 1.512156 GAGGAGGACCGAGATCGAGC 61.512 65.000 3.31 0.00 43.02 5.03
49 50 1.527380 GGAGGACCGAGATCGAGCT 60.527 63.158 1.00 1.00 43.02 4.09
50 51 1.512156 GGAGGACCGAGATCGAGCTC 61.512 65.000 20.60 20.60 43.02 4.09
52 53 0.817634 AGGACCGAGATCGAGCTCTG 60.818 60.000 26.56 22.68 43.02 3.35
53 54 1.652012 GACCGAGATCGAGCTCTGG 59.348 63.158 27.96 27.96 43.02 3.86
55 56 0.817634 ACCGAGATCGAGCTCTGGAG 60.818 60.000 32.87 20.53 43.02 3.86
56 57 0.533978 CCGAGATCGAGCTCTGGAGA 60.534 60.000 26.65 1.42 43.02 3.71
59 60 2.783135 GAGATCGAGCTCTGGAGAGAT 58.217 52.381 22.99 5.69 44.40 2.75
60 61 3.616317 CGAGATCGAGCTCTGGAGAGATA 60.616 52.174 26.56 0.00 41.40 1.98
61 62 4.517285 GAGATCGAGCTCTGGAGAGATAT 58.483 47.826 22.99 3.01 41.40 1.63
62 63 4.264253 AGATCGAGCTCTGGAGAGATATG 58.736 47.826 12.85 0.00 41.40 1.78
63 64 2.789213 TCGAGCTCTGGAGAGATATGG 58.211 52.381 12.85 0.00 41.40 2.74
64 65 1.818060 CGAGCTCTGGAGAGATATGGG 59.182 57.143 12.85 0.00 41.40 4.00
66 67 3.711863 GAGCTCTGGAGAGATATGGGAT 58.288 50.000 6.43 0.00 41.40 3.85
68 69 3.839490 AGCTCTGGAGAGATATGGGATTG 59.161 47.826 7.89 0.00 44.74 2.67
69 70 3.055240 GCTCTGGAGAGATATGGGATTGG 60.055 52.174 7.89 0.00 44.74 3.16
70 71 3.518705 CTCTGGAGAGATATGGGATTGGG 59.481 52.174 0.00 0.00 44.74 4.12
71 72 3.144701 TCTGGAGAGATATGGGATTGGGA 59.855 47.826 0.00 0.00 0.00 4.37
72 73 3.518705 CTGGAGAGATATGGGATTGGGAG 59.481 52.174 0.00 0.00 0.00 4.30
73 74 2.843113 GGAGAGATATGGGATTGGGAGG 59.157 54.545 0.00 0.00 0.00 4.30
74 75 3.504903 GGAGAGATATGGGATTGGGAGGA 60.505 52.174 0.00 0.00 0.00 3.71
75 76 3.774216 GAGAGATATGGGATTGGGAGGAG 59.226 52.174 0.00 0.00 0.00 3.69
76 77 2.238395 GAGATATGGGATTGGGAGGAGC 59.762 54.545 0.00 0.00 0.00 4.70
77 78 0.987294 ATATGGGATTGGGAGGAGCG 59.013 55.000 0.00 0.00 0.00 5.03
78 79 0.105194 TATGGGATTGGGAGGAGCGA 60.105 55.000 0.00 0.00 0.00 4.93
80 81 2.812619 GGGATTGGGAGGAGCGAGG 61.813 68.421 0.00 0.00 0.00 4.63
81 82 2.812619 GGATTGGGAGGAGCGAGGG 61.813 68.421 0.00 0.00 0.00 4.30
82 83 2.770048 ATTGGGAGGAGCGAGGGG 60.770 66.667 0.00 0.00 0.00 4.79
86 87 3.787001 GGAGGAGCGAGGGGGTTG 61.787 72.222 0.00 0.00 0.00 3.77
87 88 3.787001 GAGGAGCGAGGGGGTTGG 61.787 72.222 0.00 0.00 0.00 3.77
92 93 4.759205 GCGAGGGGGTTGGGCATT 62.759 66.667 0.00 0.00 0.00 3.56
93 94 2.755469 CGAGGGGGTTGGGCATTG 60.755 66.667 0.00 0.00 0.00 2.82
94 95 2.364186 GAGGGGGTTGGGCATTGG 60.364 66.667 0.00 0.00 0.00 3.16
99 100 4.067913 GGTTGGGCATTGGGCGTG 62.068 66.667 0.00 0.00 46.16 5.34
100 101 4.067913 GTTGGGCATTGGGCGTGG 62.068 66.667 0.00 0.00 46.16 4.94
106 107 3.430862 CATTGGGCGTGGGACGTG 61.431 66.667 0.00 0.00 44.73 4.49
113 114 3.622826 CGTGGGACGTGGGTTCCT 61.623 66.667 0.00 0.00 42.94 3.36
114 115 2.032071 GTGGGACGTGGGTTCCTG 59.968 66.667 0.00 0.00 42.94 3.86
115 116 2.122769 TGGGACGTGGGTTCCTGA 60.123 61.111 0.00 0.00 42.94 3.86
117 118 1.221021 GGGACGTGGGTTCCTGATC 59.779 63.158 0.00 0.00 38.95 2.92
118 119 1.153628 GGACGTGGGTTCCTGATCG 60.154 63.158 0.00 0.00 0.00 3.69
119 120 1.590147 GACGTGGGTTCCTGATCGT 59.410 57.895 0.00 0.00 0.00 3.73
120 121 0.736325 GACGTGGGTTCCTGATCGTG 60.736 60.000 0.00 0.00 0.00 4.35
121 122 1.447838 CGTGGGTTCCTGATCGTGG 60.448 63.158 0.00 0.00 0.00 4.94
123 124 1.918293 TGGGTTCCTGATCGTGGCT 60.918 57.895 0.14 0.00 0.00 4.75
125 126 0.322546 GGGTTCCTGATCGTGGCTTT 60.323 55.000 0.14 0.00 0.00 3.51
126 127 1.534729 GGTTCCTGATCGTGGCTTTT 58.465 50.000 0.14 0.00 0.00 2.27
127 128 1.886542 GGTTCCTGATCGTGGCTTTTT 59.113 47.619 0.14 0.00 0.00 1.94
147 148 4.657436 TTTTCTTTTATTGTGCGTGGGT 57.343 36.364 0.00 0.00 0.00 4.51
148 149 5.769484 TTTTCTTTTATTGTGCGTGGGTA 57.231 34.783 0.00 0.00 0.00 3.69
150 151 4.274602 TCTTTTATTGTGCGTGGGTAGA 57.725 40.909 0.00 0.00 0.00 2.59
151 152 4.250464 TCTTTTATTGTGCGTGGGTAGAG 58.750 43.478 0.00 0.00 0.00 2.43
152 153 2.684001 TTATTGTGCGTGGGTAGAGG 57.316 50.000 0.00 0.00 0.00 3.69
154 155 0.537188 ATTGTGCGTGGGTAGAGGAG 59.463 55.000 0.00 0.00 0.00 3.69
155 156 1.541310 TTGTGCGTGGGTAGAGGAGG 61.541 60.000 0.00 0.00 0.00 4.30
156 157 1.681327 GTGCGTGGGTAGAGGAGGA 60.681 63.158 0.00 0.00 0.00 3.71
157 158 1.043673 GTGCGTGGGTAGAGGAGGAT 61.044 60.000 0.00 0.00 0.00 3.24
158 159 0.325296 TGCGTGGGTAGAGGAGGATT 60.325 55.000 0.00 0.00 0.00 3.01
160 161 2.030045 GCGTGGGTAGAGGAGGATTCT 61.030 57.143 0.00 0.00 0.00 2.40
164 165 2.091055 TGGGTAGAGGAGGATTCTGAGG 60.091 54.545 0.00 0.00 0.00 3.86
166 167 3.496331 GGTAGAGGAGGATTCTGAGGAG 58.504 54.545 0.00 0.00 0.00 3.69
167 168 2.773525 AGAGGAGGATTCTGAGGAGG 57.226 55.000 0.00 0.00 0.00 4.30
168 169 2.222271 AGAGGAGGATTCTGAGGAGGA 58.778 52.381 0.00 0.00 0.00 3.71
169 170 2.091333 AGAGGAGGATTCTGAGGAGGAC 60.091 54.545 0.00 0.00 0.00 3.85
170 171 1.036707 GGAGGATTCTGAGGAGGACG 58.963 60.000 0.00 0.00 0.00 4.79
171 172 1.036707 GAGGATTCTGAGGAGGACGG 58.963 60.000 0.00 0.00 0.00 4.79
172 173 0.397816 AGGATTCTGAGGAGGACGGG 60.398 60.000 0.00 0.00 0.00 5.28
173 174 1.403687 GGATTCTGAGGAGGACGGGG 61.404 65.000 0.00 0.00 0.00 5.73
175 176 0.978146 ATTCTGAGGAGGACGGGGTG 60.978 60.000 0.00 0.00 0.00 4.61
176 177 3.077556 CTGAGGAGGACGGGGTGG 61.078 72.222 0.00 0.00 0.00 4.61
177 178 3.596799 TGAGGAGGACGGGGTGGA 61.597 66.667 0.00 0.00 0.00 4.02
178 179 2.760385 GAGGAGGACGGGGTGGAG 60.760 72.222 0.00 0.00 0.00 3.86
179 180 4.400251 AGGAGGACGGGGTGGAGG 62.400 72.222 0.00 0.00 0.00 4.30
181 182 4.393778 GAGGACGGGGTGGAGGGA 62.394 72.222 0.00 0.00 0.00 4.20
182 183 3.918328 GAGGACGGGGTGGAGGGAA 62.918 68.421 0.00 0.00 0.00 3.97
183 184 3.714001 GGACGGGGTGGAGGGAAC 61.714 72.222 0.00 0.00 0.00 3.62
184 185 4.078516 GACGGGGTGGAGGGAACG 62.079 72.222 0.00 0.00 0.00 3.95
185 186 4.626402 ACGGGGTGGAGGGAACGA 62.626 66.667 0.00 0.00 0.00 3.85
186 187 3.771160 CGGGGTGGAGGGAACGAG 61.771 72.222 0.00 0.00 0.00 4.18
188 189 4.097361 GGGTGGAGGGAACGAGGC 62.097 72.222 0.00 0.00 0.00 4.70
189 190 4.452733 GGTGGAGGGAACGAGGCG 62.453 72.222 0.00 0.00 0.00 5.52
191 192 2.363795 TGGAGGGAACGAGGCGAT 60.364 61.111 0.00 0.00 0.00 4.58
192 193 2.417936 GGAGGGAACGAGGCGATC 59.582 66.667 0.00 0.00 0.00 3.69
205 206 4.363990 CGATCGCGGGATGGAGGG 62.364 72.222 20.80 0.08 31.51 4.30
206 207 2.917751 GATCGCGGGATGGAGGGA 60.918 66.667 20.80 0.00 31.51 4.20
207 208 2.445845 ATCGCGGGATGGAGGGAA 60.446 61.111 14.93 0.00 33.12 3.97
208 209 2.717139 GATCGCGGGATGGAGGGAAC 62.717 65.000 20.80 0.00 31.51 3.62
209 210 4.891727 CGCGGGATGGAGGGAACG 62.892 72.222 0.00 0.00 0.00 3.95
212 213 2.797278 CGGGATGGAGGGAACGAGG 61.797 68.421 0.00 0.00 0.00 4.63
213 214 2.444256 GGGATGGAGGGAACGAGGG 61.444 68.421 0.00 0.00 0.00 4.30
214 215 2.506472 GATGGAGGGAACGAGGGC 59.494 66.667 0.00 0.00 0.00 5.19
215 216 2.285368 ATGGAGGGAACGAGGGCA 60.285 61.111 0.00 0.00 0.00 5.36
216 217 1.694169 ATGGAGGGAACGAGGGCAT 60.694 57.895 0.00 0.00 0.00 4.40
217 218 1.700042 ATGGAGGGAACGAGGGCATC 61.700 60.000 0.00 0.00 0.00 3.91
231 232 4.217035 CATCGCGGGATGGTTTGA 57.783 55.556 29.34 0.00 45.15 2.69
232 233 2.016961 CATCGCGGGATGGTTTGAG 58.983 57.895 29.34 6.91 45.15 3.02
233 234 1.153168 ATCGCGGGATGGTTTGAGG 60.153 57.895 14.93 0.00 0.00 3.86
234 235 1.910580 ATCGCGGGATGGTTTGAGGT 61.911 55.000 14.93 0.00 0.00 3.85
235 236 2.106683 CGCGGGATGGTTTGAGGTC 61.107 63.158 0.00 0.00 0.00 3.85
236 237 2.106683 GCGGGATGGTTTGAGGTCG 61.107 63.158 0.00 0.00 0.00 4.79
238 239 0.036765 CGGGATGGTTTGAGGTCGAA 60.037 55.000 0.00 0.00 0.00 3.71
246 247 1.459592 GTTTGAGGTCGAACCATCACG 59.540 52.381 0.00 0.00 41.95 4.35
250 251 4.546637 GTCGAACCATCACGACGT 57.453 55.556 0.00 0.00 46.39 4.34
251 252 2.805277 GTCGAACCATCACGACGTT 58.195 52.632 0.00 0.00 46.39 3.99
252 253 0.706729 GTCGAACCATCACGACGTTC 59.293 55.000 0.00 0.00 46.39 3.95
255 256 1.625616 GAACCATCACGACGTTCGAT 58.374 50.000 13.06 0.00 43.74 3.59
257 258 0.179145 ACCATCACGACGTTCGATCC 60.179 55.000 13.06 0.00 43.74 3.36
258 259 0.100682 CCATCACGACGTTCGATCCT 59.899 55.000 13.06 0.00 43.74 3.24
259 260 1.467875 CATCACGACGTTCGATCCTC 58.532 55.000 13.06 0.00 43.74 3.71
260 261 0.381089 ATCACGACGTTCGATCCTCC 59.619 55.000 13.06 0.00 43.74 4.30
262 263 0.170561 CACGACGTTCGATCCTCCTT 59.829 55.000 13.06 0.00 43.74 3.36
264 265 2.086869 ACGACGTTCGATCCTCCTTTA 58.913 47.619 13.06 0.00 43.74 1.85
265 266 2.489329 ACGACGTTCGATCCTCCTTTAA 59.511 45.455 13.06 0.00 43.74 1.52
266 267 3.129988 ACGACGTTCGATCCTCCTTTAAT 59.870 43.478 13.06 0.00 43.74 1.40
269 270 5.505324 CGACGTTCGATCCTCCTTTAATAGT 60.505 44.000 0.00 0.00 43.74 2.12
270 271 6.293081 CGACGTTCGATCCTCCTTTAATAGTA 60.293 42.308 0.00 0.00 43.74 1.82
271 272 6.968250 ACGTTCGATCCTCCTTTAATAGTAG 58.032 40.000 0.00 0.00 0.00 2.57
272 273 6.769822 ACGTTCGATCCTCCTTTAATAGTAGA 59.230 38.462 0.00 0.00 0.00 2.59
274 275 7.172875 CGTTCGATCCTCCTTTAATAGTAGAGA 59.827 40.741 0.00 0.00 0.00 3.10
291 292 7.842887 AGTAGAGATATACCCAACCTTCTTC 57.157 40.000 0.00 0.00 0.00 2.87
298 299 7.628101 AGATATACCCAACCTTCTTCTACCTTT 59.372 37.037 0.00 0.00 0.00 3.11
365 373 2.157895 TGAGATCTCCATCCCCATCCAT 60.158 50.000 20.03 0.00 0.00 3.41
384 392 3.375299 CCATCCAAACACTCCGATTCTTC 59.625 47.826 0.00 0.00 0.00 2.87
385 393 3.762407 TCCAAACACTCCGATTCTTCA 57.238 42.857 0.00 0.00 0.00 3.02
431 439 5.692613 TTTACATTCCTACCAAACCGTTG 57.307 39.130 0.00 0.00 34.25 4.10
459 994 1.134280 CCCCAACTCGCTCATCTTCAT 60.134 52.381 0.00 0.00 0.00 2.57
588 1123 4.035675 GTCACCTTCAAAACCAACTCAGAG 59.964 45.833 0.00 0.00 0.00 3.35
594 1130 6.377327 TTCAAAACCAACTCAGAGTGATTC 57.623 37.500 3.05 0.00 0.00 2.52
605 1141 3.629855 TCAGAGTGATTCGAGACTCATCC 59.370 47.826 18.24 6.30 41.01 3.51
610 1146 2.159240 TGATTCGAGACTCATCCGTTGG 60.159 50.000 2.82 0.00 0.00 3.77
623 1159 0.605589 CCGTTGGGGGTGAAGTTCTC 60.606 60.000 4.17 0.00 0.00 2.87
633 1169 4.630505 GGGGTGAAGTTCTCGAATTTACTC 59.369 45.833 4.17 0.00 0.00 2.59
646 1182 8.569641 TCTCGAATTTACTCTTTATCTAGGAGC 58.430 37.037 0.00 0.00 0.00 4.70
690 1226 4.643387 AGGGCGAGTTGTGGTGGC 62.643 66.667 0.00 0.00 0.00 5.01
718 1254 2.878406 CAACACCAACCTCGAGTGATTT 59.122 45.455 12.31 0.00 35.47 2.17
728 1264 4.142271 ACCTCGAGTGATTTGAGACTCATC 60.142 45.833 12.31 2.45 39.36 2.92
730 1266 4.991472 TCGAGTGATTTGAGACTCATCTG 58.009 43.478 5.87 0.00 38.87 2.90
736 1272 8.715191 AGTGATTTGAGACTCATCTGTTTATC 57.285 34.615 5.87 2.66 34.34 1.75
737 1273 8.538701 AGTGATTTGAGACTCATCTGTTTATCT 58.461 33.333 5.87 0.00 34.34 1.98
738 1274 8.816144 GTGATTTGAGACTCATCTGTTTATCTC 58.184 37.037 5.87 0.00 34.34 2.75
740 1276 5.506686 TGAGACTCATCTGTTTATCTCGG 57.493 43.478 0.00 0.00 36.25 4.63
741 1277 4.202060 TGAGACTCATCTGTTTATCTCGGC 60.202 45.833 0.00 0.00 36.25 5.54
745 1281 2.128035 CATCTGTTTATCTCGGCGTCC 58.872 52.381 6.85 0.00 0.00 4.79
747 1283 1.546923 TCTGTTTATCTCGGCGTCCAA 59.453 47.619 6.85 0.00 0.00 3.53
748 1284 1.659098 CTGTTTATCTCGGCGTCCAAC 59.341 52.381 6.85 5.13 0.00 3.77
750 1286 0.108041 TTTATCTCGGCGTCCAACCC 60.108 55.000 6.85 0.00 0.00 4.11
751 1287 1.259142 TTATCTCGGCGTCCAACCCA 61.259 55.000 6.85 0.00 0.00 4.51
753 1289 3.691342 CTCGGCGTCCAACCCAGA 61.691 66.667 6.85 0.00 0.00 3.86
760 1296 1.669440 GTCCAACCCAGACGTGCTA 59.331 57.895 0.00 0.00 0.00 3.49
761 1297 0.669625 GTCCAACCCAGACGTGCTAC 60.670 60.000 0.00 0.00 0.00 3.58
762 1298 0.830444 TCCAACCCAGACGTGCTACT 60.830 55.000 0.00 0.00 0.00 2.57
763 1299 0.034896 CCAACCCAGACGTGCTACTT 59.965 55.000 0.00 0.00 0.00 2.24
764 1300 1.542547 CCAACCCAGACGTGCTACTTT 60.543 52.381 0.00 0.00 0.00 2.66
765 1301 1.531149 CAACCCAGACGTGCTACTTTG 59.469 52.381 0.00 0.00 0.00 2.77
766 1302 0.034896 ACCCAGACGTGCTACTTTGG 59.965 55.000 0.00 0.00 0.00 3.28
768 1304 0.034896 CCAGACGTGCTACTTTGGGT 59.965 55.000 0.00 0.00 0.00 4.51
769 1305 1.542547 CCAGACGTGCTACTTTGGGTT 60.543 52.381 0.00 0.00 0.00 4.11
771 1307 3.596214 CAGACGTGCTACTTTGGGTTAT 58.404 45.455 0.00 0.00 0.00 1.89
774 1310 5.815740 CAGACGTGCTACTTTGGGTTATAAT 59.184 40.000 0.00 0.00 0.00 1.28
775 1311 5.815740 AGACGTGCTACTTTGGGTTATAATG 59.184 40.000 0.00 0.00 0.00 1.90
776 1312 5.736813 ACGTGCTACTTTGGGTTATAATGA 58.263 37.500 0.00 0.00 0.00 2.57
777 1313 5.815740 ACGTGCTACTTTGGGTTATAATGAG 59.184 40.000 0.00 0.00 0.00 2.90
778 1314 5.236478 CGTGCTACTTTGGGTTATAATGAGG 59.764 44.000 0.00 0.00 0.00 3.86
780 1316 6.260271 GTGCTACTTTGGGTTATAATGAGGAC 59.740 42.308 0.00 0.00 0.00 3.85
784 1320 9.238368 CTACTTTGGGTTATAATGAGGACAAAA 57.762 33.333 0.00 0.00 0.00 2.44
785 1321 8.664669 ACTTTGGGTTATAATGAGGACAAAAT 57.335 30.769 0.00 0.00 0.00 1.82
786 1322 8.749354 ACTTTGGGTTATAATGAGGACAAAATC 58.251 33.333 0.00 0.00 0.00 2.17
787 1323 8.893563 TTTGGGTTATAATGAGGACAAAATCT 57.106 30.769 0.00 0.00 0.00 2.40
789 1325 8.292444 TGGGTTATAATGAGGACAAAATCTTG 57.708 34.615 0.00 0.00 38.61 3.02
790 1326 8.112822 TGGGTTATAATGAGGACAAAATCTTGA 58.887 33.333 0.00 0.00 36.33 3.02
791 1327 8.966868 GGGTTATAATGAGGACAAAATCTTGAA 58.033 33.333 0.00 0.00 36.33 2.69
797 1333 7.627298 ATGAGGACAAAATCTTGAAGATGAG 57.373 36.000 8.68 4.55 34.65 2.90
798 1334 6.772605 TGAGGACAAAATCTTGAAGATGAGA 58.227 36.000 8.68 0.00 34.65 3.27
799 1335 6.877855 TGAGGACAAAATCTTGAAGATGAGAG 59.122 38.462 8.68 2.48 34.65 3.20
800 1336 5.647225 AGGACAAAATCTTGAAGATGAGAGC 59.353 40.000 8.68 0.00 34.65 4.09
801 1337 5.647225 GGACAAAATCTTGAAGATGAGAGCT 59.353 40.000 8.68 0.00 34.65 4.09
803 1339 7.201600 GGACAAAATCTTGAAGATGAGAGCTAC 60.202 40.741 8.68 0.00 34.65 3.58
804 1340 7.393216 ACAAAATCTTGAAGATGAGAGCTACT 58.607 34.615 8.68 0.00 34.65 2.57
805 1341 7.333921 ACAAAATCTTGAAGATGAGAGCTACTG 59.666 37.037 8.68 0.00 34.65 2.74
808 1344 5.019470 TCTTGAAGATGAGAGCTACTGGAA 58.981 41.667 0.00 0.00 0.00 3.53
812 1348 4.669206 AGATGAGAGCTACTGGAATGTG 57.331 45.455 0.00 0.00 0.00 3.21
839 1375 6.709018 AAAAAGGTCGGAAAATCTTGAAGA 57.291 33.333 0.00 0.00 0.00 2.87
840 1376 6.901081 AAAAGGTCGGAAAATCTTGAAGAT 57.099 33.333 0.97 0.97 36.28 2.40
841 1377 5.886960 AAGGTCGGAAAATCTTGAAGATG 57.113 39.130 8.68 0.00 34.65 2.90
845 1381 5.293079 GGTCGGAAAATCTTGAAGATGAGAG 59.707 44.000 8.68 0.65 34.65 3.20
865 1419 2.499289 AGCCACCAGACACTCTTCATAG 59.501 50.000 0.00 0.00 0.00 2.23
868 1422 3.428180 CCACCAGACACTCTTCATAGTCG 60.428 52.174 0.00 0.00 36.18 4.18
870 1424 3.017442 CCAGACACTCTTCATAGTCGGA 58.983 50.000 0.00 0.00 36.18 4.55
871 1425 3.181495 CCAGACACTCTTCATAGTCGGAC 60.181 52.174 0.00 0.00 36.18 4.79
873 1427 3.942748 AGACACTCTTCATAGTCGGACTC 59.057 47.826 15.05 0.00 36.18 3.36
874 1428 3.942748 GACACTCTTCATAGTCGGACTCT 59.057 47.826 15.05 1.41 0.00 3.24
876 1430 4.396790 ACACTCTTCATAGTCGGACTCTTC 59.603 45.833 15.05 0.00 0.00 2.87
878 1432 4.879545 ACTCTTCATAGTCGGACTCTTCTC 59.120 45.833 15.05 0.00 0.00 2.87
879 1433 3.872182 TCTTCATAGTCGGACTCTTCTCG 59.128 47.826 15.05 0.82 0.00 4.04
880 1434 3.263489 TCATAGTCGGACTCTTCTCGT 57.737 47.619 15.05 0.00 0.00 4.18
881 1435 4.397481 TCATAGTCGGACTCTTCTCGTA 57.603 45.455 15.05 0.00 0.00 3.43
882 1436 4.118410 TCATAGTCGGACTCTTCTCGTAC 58.882 47.826 15.05 0.00 0.00 3.67
885 1439 0.742281 TCGGACTCTTCTCGTACCCG 60.742 60.000 0.00 0.00 37.08 5.28
886 1440 0.742281 CGGACTCTTCTCGTACCCGA 60.742 60.000 0.00 0.00 41.73 5.14
905 1459 2.278401 GGATACGCCACGTCGTCC 60.278 66.667 5.49 2.42 43.15 4.79
907 1461 1.298190 GATACGCCACGTCGTCCTC 60.298 63.158 5.49 1.74 43.15 3.71
908 1462 2.659017 GATACGCCACGTCGTCCTCC 62.659 65.000 5.49 0.00 43.15 4.30
910 1464 4.778415 CGCCACGTCGTCCTCCAG 62.778 72.222 0.00 0.00 0.00 3.86
911 1465 4.436998 GCCACGTCGTCCTCCAGG 62.437 72.222 0.00 0.00 0.00 4.45
912 1466 4.436998 CCACGTCGTCCTCCAGGC 62.437 72.222 0.00 0.00 34.44 4.85
913 1467 4.436998 CACGTCGTCCTCCAGGCC 62.437 72.222 0.00 0.00 34.44 5.19
965 1519 3.212682 TTGCGCTGCCGTTCCAAA 61.213 55.556 9.73 0.00 36.67 3.28
966 1520 2.775856 TTGCGCTGCCGTTCCAAAA 61.776 52.632 9.73 0.00 36.67 2.44
967 1521 2.729491 GCGCTGCCGTTCCAAAAC 60.729 61.111 0.00 0.00 36.67 2.43
968 1522 2.050442 CGCTGCCGTTCCAAAACC 60.050 61.111 0.00 0.00 31.27 3.27
969 1523 2.338620 GCTGCCGTTCCAAAACCC 59.661 61.111 0.00 0.00 31.27 4.11
970 1524 2.200337 GCTGCCGTTCCAAAACCCT 61.200 57.895 0.00 0.00 31.27 4.34
971 1525 0.891904 GCTGCCGTTCCAAAACCCTA 60.892 55.000 0.00 0.00 31.27 3.53
972 1526 1.165270 CTGCCGTTCCAAAACCCTAG 58.835 55.000 0.00 0.00 31.27 3.02
973 1527 0.891904 TGCCGTTCCAAAACCCTAGC 60.892 55.000 0.00 0.00 31.27 3.42
976 1530 0.963856 CGTTCCAAAACCCTAGCCCC 60.964 60.000 0.00 0.00 31.27 5.80
977 1531 0.613853 GTTCCAAAACCCTAGCCCCC 60.614 60.000 0.00 0.00 0.00 5.40
979 1533 1.304962 CCAAAACCCTAGCCCCCAC 60.305 63.158 0.00 0.00 0.00 4.61
980 1534 1.304962 CAAAACCCTAGCCCCCACC 60.305 63.158 0.00 0.00 0.00 4.61
981 1535 2.554291 AAAACCCTAGCCCCCACCC 61.554 63.158 0.00 0.00 0.00 4.61
984 1538 4.779486 CCCTAGCCCCCACCCCTT 62.779 72.222 0.00 0.00 0.00 3.95
985 1539 3.097162 CCTAGCCCCCACCCCTTC 61.097 72.222 0.00 0.00 0.00 3.46
986 1540 3.097162 CTAGCCCCCACCCCTTCC 61.097 72.222 0.00 0.00 0.00 3.46
987 1541 4.771745 TAGCCCCCACCCCTTCCC 62.772 72.222 0.00 0.00 0.00 3.97
998 1552 3.661648 CCTTCCCCCACCCACCAG 61.662 72.222 0.00 0.00 0.00 4.00
999 1553 2.531685 CTTCCCCCACCCACCAGA 60.532 66.667 0.00 0.00 0.00 3.86
1000 1554 2.038221 TTCCCCCACCCACCAGAA 60.038 61.111 0.00 0.00 0.00 3.02
1001 1555 1.467190 TTCCCCCACCCACCAGAAT 60.467 57.895 0.00 0.00 0.00 2.40
1002 1556 1.799157 TTCCCCCACCCACCAGAATG 61.799 60.000 0.00 0.00 0.00 2.67
1045 1599 4.147449 CTGTCCTCGGCGCATCCA 62.147 66.667 10.83 0.00 34.01 3.41
2150 2741 0.457851 AGCTGCTCGTCATGTACCTC 59.542 55.000 0.00 0.00 0.00 3.85
2375 2970 2.359900 GAGCCATGGAAGGTTACACAG 58.640 52.381 18.40 0.00 0.00 3.66
2396 2991 2.298729 GGAGGAGCTGGATGAGTATGAC 59.701 54.545 0.00 0.00 0.00 3.06
2546 3141 4.506288 GGTTTTGCACACAAGTTTATCCAC 59.494 41.667 0.00 0.00 37.04 4.02
2772 3367 2.565834 GCAGGTGTCAGGGTCTTAGTTA 59.434 50.000 0.00 0.00 0.00 2.24
2843 3438 4.759693 TCATGACGGTGTTTTTAGCTTCAT 59.240 37.500 0.00 0.00 37.48 2.57
2908 3503 4.468713 CACCAGGAGATAGAGATCTGTGA 58.531 47.826 0.00 0.00 42.80 3.58
2914 3509 7.364585 CCAGGAGATAGAGATCTGTGAAAGTTT 60.365 40.741 0.00 0.00 42.80 2.66
2915 3510 7.492020 CAGGAGATAGAGATCTGTGAAAGTTTG 59.508 40.741 0.00 0.00 42.80 2.93
2916 3511 6.257630 GGAGATAGAGATCTGTGAAAGTTTGC 59.742 42.308 0.00 0.00 42.80 3.68
2932 3543 0.934496 TTGCTGTTCTTGTTCGGTCG 59.066 50.000 0.00 0.00 0.00 4.79
2957 3568 8.436200 CGCTCAAAGCTAGGATTGTAAATATAC 58.564 37.037 0.00 0.00 39.60 1.47
3049 3663 8.539770 AGCGAAATTATATAGTCTGTCAATGG 57.460 34.615 0.00 0.00 0.00 3.16
3078 3692 4.099573 CCTTGGTAGGTATGTCGATCTGTT 59.900 45.833 0.00 0.00 36.74 3.16
3145 3759 2.425143 ATGTGATAACCTGCCACCAG 57.575 50.000 0.00 0.00 38.85 4.00
3312 3927 5.297029 GTGTTTTAAGGCTCTCTGTTCAGTT 59.703 40.000 0.00 0.00 0.00 3.16
3351 4136 1.913778 AGTCATGCATTTCTGTGCCA 58.086 45.000 0.00 0.00 44.43 4.92
3581 4366 5.306937 TCAGGTATTGGAAGTCTTGTCTTCA 59.693 40.000 9.13 0.00 43.72 3.02
3585 4370 6.314896 GGTATTGGAAGTCTTGTCTTCATCAG 59.685 42.308 9.13 0.00 43.72 2.90
3662 4448 3.821421 ACTTCACCGTCAACTTCTTCT 57.179 42.857 0.00 0.00 0.00 2.85
3946 4751 7.994425 TCAGGTACACATTTTGTTACATGAT 57.006 32.000 0.00 0.00 39.91 2.45
3947 4752 8.402798 TCAGGTACACATTTTGTTACATGATT 57.597 30.769 0.00 0.00 39.91 2.57
3948 4753 8.855110 TCAGGTACACATTTTGTTACATGATTT 58.145 29.630 0.00 0.00 39.91 2.17
4053 4860 8.729756 CAGTATATGTGTCCATTTTCAGTTCAA 58.270 33.333 0.00 0.00 32.29 2.69
4057 4864 3.066203 GTGTCCATTTTCAGTTCAACCGT 59.934 43.478 0.00 0.00 0.00 4.83
4075 4882 5.227238 ACCGTATTAGTACTTGAGTCGTG 57.773 43.478 0.00 0.00 0.00 4.35
4097 4904 3.562505 CTGCTGAACAAATCAACTGAGC 58.437 45.455 0.00 0.00 37.67 4.26
4156 4971 4.207165 GGAGTTGCCTTATATTGCTGGAA 58.793 43.478 0.00 0.00 0.00 3.53
4184 4999 7.944729 AGTTTAGTGATTTGTCTGGCATAAT 57.055 32.000 0.00 0.00 0.00 1.28
4328 6245 7.047271 TCATTTGTGCTCTGCTTGTGTATATA 58.953 34.615 0.00 0.00 0.00 0.86
4411 6332 0.107993 TGAAGCTGCTTCTGATCCGG 60.108 55.000 34.44 0.00 40.73 5.14
4507 6752 3.956848 GGATGAAAAAGATCTTCCAGGGG 59.043 47.826 8.78 0.00 41.18 4.79
5067 7422 3.871006 CCGTTGCTAATGCTTCTGTGATA 59.129 43.478 0.00 0.00 40.48 2.15
5068 7423 4.260375 CCGTTGCTAATGCTTCTGTGATAC 60.260 45.833 0.00 0.00 40.48 2.24
5312 7675 7.425577 AAACTTACGTTGTAATACAGGGTTC 57.574 36.000 0.00 0.00 32.65 3.62
5504 7907 1.234615 CGGTGGTTGCGTTCTCCAAT 61.235 55.000 0.00 0.00 32.82 3.16
5661 8193 9.135843 GCATACAGTACATAATTGACGCTAATA 57.864 33.333 0.00 0.00 0.00 0.98
5716 8252 1.485066 CCTTAGCGGGTGACACCTATT 59.515 52.381 23.72 11.67 38.64 1.73
5724 8260 2.224917 GGGTGACACCTATTTTGACCCA 60.225 50.000 23.72 0.00 41.17 4.51
5806 8342 0.251077 ACCAAAGCCAGAAGCCAGAG 60.251 55.000 0.00 0.00 45.47 3.35
5882 8418 0.035439 TTCAGTTCCCTCGCCCAATC 60.035 55.000 0.00 0.00 0.00 2.67
5941 8477 7.995488 AGCCCTAGATTATTGCCATATATTGAC 59.005 37.037 0.00 0.00 0.00 3.18
5981 8517 1.128200 CTGATTCCCGGTGGGTATGA 58.872 55.000 0.00 0.00 44.74 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.436998 GTCCTCCTCCACCACGCG 62.437 72.222 3.53 3.53 0.00 6.01
21 22 4.083862 GGTCCTCCTCCACCACGC 62.084 72.222 0.00 0.00 32.33 5.34
22 23 3.760035 CGGTCCTCCTCCACCACG 61.760 72.222 0.00 0.00 32.33 4.94
25 26 1.075896 ATCTCGGTCCTCCTCCACC 60.076 63.158 0.00 0.00 0.00 4.61
26 27 1.448922 CGATCTCGGTCCTCCTCCAC 61.449 65.000 0.00 0.00 35.37 4.02
27 28 1.152943 CGATCTCGGTCCTCCTCCA 60.153 63.158 0.00 0.00 35.37 3.86
29 30 1.512156 GCTCGATCTCGGTCCTCCTC 61.512 65.000 0.00 0.00 40.29 3.71
30 31 1.527380 GCTCGATCTCGGTCCTCCT 60.527 63.158 0.00 0.00 40.29 3.69
31 32 1.512156 GAGCTCGATCTCGGTCCTCC 61.512 65.000 0.00 0.00 40.29 4.30
32 33 0.534203 AGAGCTCGATCTCGGTCCTC 60.534 60.000 8.37 3.92 40.29 3.71
33 34 0.817634 CAGAGCTCGATCTCGGTCCT 60.818 60.000 8.37 0.00 40.29 3.85
34 35 1.652012 CAGAGCTCGATCTCGGTCC 59.348 63.158 8.37 0.00 40.29 4.46
36 37 0.817634 CTCCAGAGCTCGATCTCGGT 60.818 60.000 19.37 1.23 40.29 4.69
37 38 0.533978 TCTCCAGAGCTCGATCTCGG 60.534 60.000 8.37 16.14 40.29 4.63
38 39 0.867746 CTCTCCAGAGCTCGATCTCG 59.132 60.000 8.37 6.00 38.12 4.04
39 40 2.254546 TCTCTCCAGAGCTCGATCTC 57.745 55.000 8.37 8.23 41.80 2.75
41 42 3.378112 CCATATCTCTCCAGAGCTCGATC 59.622 52.174 8.37 0.00 41.80 3.69
42 43 3.355378 CCATATCTCTCCAGAGCTCGAT 58.645 50.000 8.37 6.43 41.80 3.59
44 45 1.818060 CCCATATCTCTCCAGAGCTCG 59.182 57.143 8.37 3.24 41.80 5.03
45 46 3.168035 TCCCATATCTCTCCAGAGCTC 57.832 52.381 5.27 5.27 41.80 4.09
47 48 3.055240 CCAATCCCATATCTCTCCAGAGC 60.055 52.174 0.00 0.00 41.80 4.09
48 49 3.518705 CCCAATCCCATATCTCTCCAGAG 59.481 52.174 0.00 0.00 43.36 3.35
49 50 3.144701 TCCCAATCCCATATCTCTCCAGA 59.855 47.826 0.00 0.00 0.00 3.86
50 51 3.518705 CTCCCAATCCCATATCTCTCCAG 59.481 52.174 0.00 0.00 0.00 3.86
52 53 2.843113 CCTCCCAATCCCATATCTCTCC 59.157 54.545 0.00 0.00 0.00 3.71
53 54 3.774216 CTCCTCCCAATCCCATATCTCTC 59.226 52.174 0.00 0.00 0.00 3.20
55 56 2.238395 GCTCCTCCCAATCCCATATCTC 59.762 54.545 0.00 0.00 0.00 2.75
56 57 2.273619 GCTCCTCCCAATCCCATATCT 58.726 52.381 0.00 0.00 0.00 1.98
59 60 0.105194 TCGCTCCTCCCAATCCCATA 60.105 55.000 0.00 0.00 0.00 2.74
60 61 1.384502 TCGCTCCTCCCAATCCCAT 60.385 57.895 0.00 0.00 0.00 4.00
61 62 2.040442 TCGCTCCTCCCAATCCCA 59.960 61.111 0.00 0.00 0.00 4.37
62 63 2.812619 CCTCGCTCCTCCCAATCCC 61.813 68.421 0.00 0.00 0.00 3.85
63 64 2.812619 CCCTCGCTCCTCCCAATCC 61.813 68.421 0.00 0.00 0.00 3.01
64 65 2.812619 CCCCTCGCTCCTCCCAATC 61.813 68.421 0.00 0.00 0.00 2.67
69 70 3.787001 CAACCCCCTCGCTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
70 71 3.787001 CCAACCCCCTCGCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
75 76 4.759205 AATGCCCAACCCCCTCGC 62.759 66.667 0.00 0.00 0.00 5.03
76 77 2.755469 CAATGCCCAACCCCCTCG 60.755 66.667 0.00 0.00 0.00 4.63
77 78 2.364186 CCAATGCCCAACCCCCTC 60.364 66.667 0.00 0.00 0.00 4.30
78 79 4.010018 CCCAATGCCCAACCCCCT 62.010 66.667 0.00 0.00 0.00 4.79
82 83 4.067913 CACGCCCAATGCCCAACC 62.068 66.667 0.00 0.00 36.24 3.77
83 84 4.067913 CCACGCCCAATGCCCAAC 62.068 66.667 0.00 0.00 36.24 3.77
97 98 1.838073 ATCAGGAACCCACGTCCCAC 61.838 60.000 0.00 0.00 0.00 4.61
98 99 1.537889 ATCAGGAACCCACGTCCCA 60.538 57.895 0.00 0.00 0.00 4.37
99 100 1.221021 GATCAGGAACCCACGTCCC 59.779 63.158 0.00 0.00 0.00 4.46
100 101 1.153628 CGATCAGGAACCCACGTCC 60.154 63.158 0.00 0.00 0.00 4.79
101 102 0.736325 CACGATCAGGAACCCACGTC 60.736 60.000 0.00 0.00 31.82 4.34
102 103 1.292223 CACGATCAGGAACCCACGT 59.708 57.895 0.00 0.00 34.40 4.49
103 104 1.447838 CCACGATCAGGAACCCACG 60.448 63.158 0.00 0.00 0.00 4.94
104 105 1.745489 GCCACGATCAGGAACCCAC 60.745 63.158 5.41 0.00 0.00 4.61
105 106 1.488705 AAGCCACGATCAGGAACCCA 61.489 55.000 5.41 0.00 0.00 4.51
106 107 0.322546 AAAGCCACGATCAGGAACCC 60.323 55.000 5.41 0.00 0.00 4.11
125 126 5.012328 ACCCACGCACAATAAAAGAAAAA 57.988 34.783 0.00 0.00 0.00 1.94
126 127 4.657436 ACCCACGCACAATAAAAGAAAA 57.343 36.364 0.00 0.00 0.00 2.29
127 128 5.064558 TCTACCCACGCACAATAAAAGAAA 58.935 37.500 0.00 0.00 0.00 2.52
128 129 4.643463 TCTACCCACGCACAATAAAAGAA 58.357 39.130 0.00 0.00 0.00 2.52
129 130 4.250464 CTCTACCCACGCACAATAAAAGA 58.750 43.478 0.00 0.00 0.00 2.52
132 133 2.568062 TCCTCTACCCACGCACAATAAA 59.432 45.455 0.00 0.00 0.00 1.40
134 135 1.754803 CTCCTCTACCCACGCACAATA 59.245 52.381 0.00 0.00 0.00 1.90
135 136 0.537188 CTCCTCTACCCACGCACAAT 59.463 55.000 0.00 0.00 0.00 2.71
137 138 1.982395 CCTCCTCTACCCACGCACA 60.982 63.158 0.00 0.00 0.00 4.57
138 139 1.043673 ATCCTCCTCTACCCACGCAC 61.044 60.000 0.00 0.00 0.00 5.34
140 141 0.389757 GAATCCTCCTCTACCCACGC 59.610 60.000 0.00 0.00 0.00 5.34
142 143 2.962421 CTCAGAATCCTCCTCTACCCAC 59.038 54.545 0.00 0.00 0.00 4.61
144 145 2.178106 TCCTCAGAATCCTCCTCTACCC 59.822 54.545 0.00 0.00 0.00 3.69
145 146 3.496331 CTCCTCAGAATCCTCCTCTACC 58.504 54.545 0.00 0.00 0.00 3.18
147 148 3.139397 GTCCTCCTCAGAATCCTCCTCTA 59.861 52.174 0.00 0.00 0.00 2.43
148 149 2.091333 GTCCTCCTCAGAATCCTCCTCT 60.091 54.545 0.00 0.00 0.00 3.69
150 151 1.410932 CGTCCTCCTCAGAATCCTCCT 60.411 57.143 0.00 0.00 0.00 3.69
151 152 1.036707 CGTCCTCCTCAGAATCCTCC 58.963 60.000 0.00 0.00 0.00 4.30
152 153 1.036707 CCGTCCTCCTCAGAATCCTC 58.963 60.000 0.00 0.00 0.00 3.71
154 155 1.403687 CCCCGTCCTCCTCAGAATCC 61.404 65.000 0.00 0.00 0.00 3.01
155 156 0.688087 ACCCCGTCCTCCTCAGAATC 60.688 60.000 0.00 0.00 0.00 2.52
156 157 0.978146 CACCCCGTCCTCCTCAGAAT 60.978 60.000 0.00 0.00 0.00 2.40
157 158 1.609501 CACCCCGTCCTCCTCAGAA 60.610 63.158 0.00 0.00 0.00 3.02
158 159 2.037367 CACCCCGTCCTCCTCAGA 59.963 66.667 0.00 0.00 0.00 3.27
160 161 3.596799 TCCACCCCGTCCTCCTCA 61.597 66.667 0.00 0.00 0.00 3.86
164 165 3.918328 TTCCCTCCACCCCGTCCTC 62.918 68.421 0.00 0.00 0.00 3.71
166 167 3.714001 GTTCCCTCCACCCCGTCC 61.714 72.222 0.00 0.00 0.00 4.79
167 168 4.078516 CGTTCCCTCCACCCCGTC 62.079 72.222 0.00 0.00 0.00 4.79
168 169 4.626402 TCGTTCCCTCCACCCCGT 62.626 66.667 0.00 0.00 0.00 5.28
169 170 3.771160 CTCGTTCCCTCCACCCCG 61.771 72.222 0.00 0.00 0.00 5.73
170 171 3.400054 CCTCGTTCCCTCCACCCC 61.400 72.222 0.00 0.00 0.00 4.95
171 172 4.097361 GCCTCGTTCCCTCCACCC 62.097 72.222 0.00 0.00 0.00 4.61
172 173 4.452733 CGCCTCGTTCCCTCCACC 62.453 72.222 0.00 0.00 0.00 4.61
173 174 2.630592 GATCGCCTCGTTCCCTCCAC 62.631 65.000 0.00 0.00 0.00 4.02
175 176 2.417936 GATCGCCTCGTTCCCTCC 59.582 66.667 0.00 0.00 0.00 4.30
176 177 2.026301 CGATCGCCTCGTTCCCTC 59.974 66.667 0.26 0.00 42.56 4.30
188 189 4.363990 CCCTCCATCCCGCGATCG 62.364 72.222 11.69 11.69 0.00 3.69
189 190 2.507854 TTCCCTCCATCCCGCGATC 61.508 63.158 8.23 0.00 0.00 3.69
191 192 3.467226 GTTCCCTCCATCCCGCGA 61.467 66.667 8.23 0.00 0.00 5.87
192 193 4.891727 CGTTCCCTCCATCCCGCG 62.892 72.222 0.00 0.00 0.00 6.46
193 194 3.447025 CTCGTTCCCTCCATCCCGC 62.447 68.421 0.00 0.00 0.00 6.13
195 196 2.444256 CCCTCGTTCCCTCCATCCC 61.444 68.421 0.00 0.00 0.00 3.85
197 198 1.700042 ATGCCCTCGTTCCCTCCATC 61.700 60.000 0.00 0.00 0.00 3.51
198 199 1.694169 ATGCCCTCGTTCCCTCCAT 60.694 57.895 0.00 0.00 0.00 3.41
199 200 2.285368 ATGCCCTCGTTCCCTCCA 60.285 61.111 0.00 0.00 0.00 3.86
200 201 2.506472 GATGCCCTCGTTCCCTCC 59.494 66.667 0.00 0.00 0.00 4.30
201 202 2.107141 CGATGCCCTCGTTCCCTC 59.893 66.667 0.00 0.00 42.56 4.30
209 210 4.996434 CCATCCCGCGATGCCCTC 62.996 72.222 8.23 0.00 44.00 4.30
212 213 2.828549 AAACCATCCCGCGATGCC 60.829 61.111 8.23 0.00 44.00 4.40
213 214 2.051804 CTCAAACCATCCCGCGATGC 62.052 60.000 8.23 0.00 44.00 3.91
214 215 1.439353 CCTCAAACCATCCCGCGATG 61.439 60.000 8.23 3.81 44.80 3.84
215 216 1.153168 CCTCAAACCATCCCGCGAT 60.153 57.895 8.23 0.00 0.00 4.58
216 217 2.267642 CCTCAAACCATCCCGCGA 59.732 61.111 8.23 0.00 0.00 5.87
217 218 2.046314 ACCTCAAACCATCCCGCG 60.046 61.111 0.00 0.00 0.00 6.46
220 221 1.450025 GTTCGACCTCAAACCATCCC 58.550 55.000 0.00 0.00 0.00 3.85
225 226 1.804748 GTGATGGTTCGACCTCAAACC 59.195 52.381 5.77 0.69 44.29 3.27
226 227 1.459592 CGTGATGGTTCGACCTCAAAC 59.540 52.381 5.77 0.00 39.58 2.93
227 228 1.341852 TCGTGATGGTTCGACCTCAAA 59.658 47.619 5.77 0.00 39.58 2.69
228 229 0.963225 TCGTGATGGTTCGACCTCAA 59.037 50.000 5.77 0.00 39.58 3.02
234 235 3.096541 GAACGTCGTGATGGTTCGA 57.903 52.632 0.00 0.00 31.82 3.71
236 237 1.582502 GATCGAACGTCGTGATGGTTC 59.417 52.381 0.00 6.67 41.35 3.62
238 239 0.179145 GGATCGAACGTCGTGATGGT 60.179 55.000 0.00 0.00 41.35 3.55
240 241 1.467875 GAGGATCGAACGTCGTGATG 58.532 55.000 0.00 0.00 41.35 3.07
241 242 0.381089 GGAGGATCGAACGTCGTGAT 59.619 55.000 0.00 0.00 41.35 3.06
242 243 0.675837 AGGAGGATCGAACGTCGTGA 60.676 55.000 9.35 0.00 41.35 4.35
243 244 0.170561 AAGGAGGATCGAACGTCGTG 59.829 55.000 10.63 0.00 41.35 4.35
245 246 2.838386 TAAAGGAGGATCGAACGTCG 57.162 50.000 8.94 0.00 42.10 5.12
246 247 5.829829 ACTATTAAAGGAGGATCGAACGTC 58.170 41.667 6.82 6.82 34.37 4.34
248 249 7.172875 TCTCTACTATTAAAGGAGGATCGAACG 59.827 40.741 0.00 0.00 36.71 3.95
249 250 8.393671 TCTCTACTATTAAAGGAGGATCGAAC 57.606 38.462 0.00 0.00 36.71 3.95
264 265 9.900112 AAGAAGGTTGGGTATATCTCTACTATT 57.100 33.333 0.00 0.00 0.00 1.73
265 266 9.536510 GAAGAAGGTTGGGTATATCTCTACTAT 57.463 37.037 0.00 0.00 0.00 2.12
266 267 8.734763 AGAAGAAGGTTGGGTATATCTCTACTA 58.265 37.037 0.00 0.00 0.00 1.82
269 270 7.949006 GGTAGAAGAAGGTTGGGTATATCTCTA 59.051 40.741 0.00 0.00 0.00 2.43
270 271 6.783482 GGTAGAAGAAGGTTGGGTATATCTCT 59.217 42.308 0.00 0.00 0.00 3.10
271 272 6.783482 AGGTAGAAGAAGGTTGGGTATATCTC 59.217 42.308 0.00 0.00 0.00 2.75
272 273 6.694611 AGGTAGAAGAAGGTTGGGTATATCT 58.305 40.000 0.00 0.00 0.00 1.98
274 275 7.766736 AAAGGTAGAAGAAGGTTGGGTATAT 57.233 36.000 0.00 0.00 0.00 0.86
291 292 5.880887 GGAGGAAGATTGGTGTTAAAGGTAG 59.119 44.000 0.00 0.00 0.00 3.18
298 299 2.912956 AGCTGGAGGAAGATTGGTGTTA 59.087 45.455 0.00 0.00 0.00 2.41
365 373 3.557054 CCTGAAGAATCGGAGTGTTTGGA 60.557 47.826 3.51 0.00 33.44 3.53
384 392 3.244840 GGATGAATCTCCTCCAATCCCTG 60.245 52.174 0.00 0.00 32.30 4.45
385 393 2.985311 GGATGAATCTCCTCCAATCCCT 59.015 50.000 0.00 0.00 32.30 4.20
431 439 2.358737 CGAGTTGGGGAGGCACAC 60.359 66.667 0.00 0.00 0.00 3.82
459 994 5.296780 CCAAGCTTCAAGAGTAACAACTTGA 59.703 40.000 0.00 0.00 46.70 3.02
517 1052 4.262164 GGAGCACACCACAATCAAAGAATT 60.262 41.667 0.00 0.00 0.00 2.17
518 1053 3.256631 GGAGCACACCACAATCAAAGAAT 59.743 43.478 0.00 0.00 0.00 2.40
521 1056 1.069022 CGGAGCACACCACAATCAAAG 60.069 52.381 0.00 0.00 0.00 2.77
533 1068 1.977056 ATATACGTCTCCGGAGCACA 58.023 50.000 27.39 6.96 38.78 4.57
588 1123 2.853731 ACGGATGAGTCTCGAATCAC 57.146 50.000 0.00 0.00 38.29 3.06
594 1130 1.141881 CCCCAACGGATGAGTCTCG 59.858 63.158 0.00 0.00 0.00 4.04
605 1141 0.949105 CGAGAACTTCACCCCCAACG 60.949 60.000 0.00 0.00 0.00 4.10
610 1146 4.576879 AGTAAATTCGAGAACTTCACCCC 58.423 43.478 0.00 0.00 0.00 4.95
623 1159 7.140048 ACGCTCCTAGATAAAGAGTAAATTCG 58.860 38.462 0.00 0.00 0.00 3.34
633 1169 5.470047 AACCCATACGCTCCTAGATAAAG 57.530 43.478 0.00 0.00 0.00 1.85
639 1175 3.867723 CGAACCCATACGCTCCTAG 57.132 57.895 0.00 0.00 0.00 3.02
646 1182 2.279252 CTCCGGCGAACCCATACG 60.279 66.667 9.30 0.00 0.00 3.06
667 1203 4.070552 ACAACTCGCCCTCCTCGC 62.071 66.667 0.00 0.00 0.00 5.03
690 1226 1.318576 GAGGTTGGTGTTGAAGGTGG 58.681 55.000 0.00 0.00 0.00 4.61
718 1254 4.202060 GCCGAGATAAACAGATGAGTCTCA 60.202 45.833 4.68 4.68 33.48 3.27
728 1264 1.659098 GTTGGACGCCGAGATAAACAG 59.341 52.381 0.00 0.00 0.00 3.16
730 1266 1.004595 GGTTGGACGCCGAGATAAAC 58.995 55.000 0.00 0.00 0.00 2.01
736 1272 3.691342 TCTGGGTTGGACGCCGAG 61.691 66.667 0.00 0.00 33.82 4.63
737 1273 3.998672 GTCTGGGTTGGACGCCGA 61.999 66.667 0.00 0.00 0.00 5.54
745 1281 1.531149 CAAAGTAGCACGTCTGGGTTG 59.469 52.381 0.00 0.00 0.00 3.77
747 1283 0.034896 CCAAAGTAGCACGTCTGGGT 59.965 55.000 0.00 0.00 0.00 4.51
748 1284 0.673644 CCCAAAGTAGCACGTCTGGG 60.674 60.000 0.00 0.00 37.74 4.45
750 1286 1.878953 AACCCAAAGTAGCACGTCTG 58.121 50.000 0.00 0.00 0.00 3.51
751 1287 3.975168 ATAACCCAAAGTAGCACGTCT 57.025 42.857 0.00 0.00 0.00 4.18
753 1289 5.736813 TCATTATAACCCAAAGTAGCACGT 58.263 37.500 0.00 0.00 0.00 4.49
755 1291 6.260271 GTCCTCATTATAACCCAAAGTAGCAC 59.740 42.308 0.00 0.00 0.00 4.40
756 1292 6.069905 TGTCCTCATTATAACCCAAAGTAGCA 60.070 38.462 0.00 0.00 0.00 3.49
757 1293 6.354130 TGTCCTCATTATAACCCAAAGTAGC 58.646 40.000 0.00 0.00 0.00 3.58
758 1294 8.801882 TTTGTCCTCATTATAACCCAAAGTAG 57.198 34.615 0.00 0.00 0.00 2.57
760 1296 8.664669 ATTTTGTCCTCATTATAACCCAAAGT 57.335 30.769 0.00 0.00 0.00 2.66
761 1297 8.971073 AGATTTTGTCCTCATTATAACCCAAAG 58.029 33.333 0.00 0.00 0.00 2.77
762 1298 8.893563 AGATTTTGTCCTCATTATAACCCAAA 57.106 30.769 0.00 0.00 0.00 3.28
763 1299 8.748412 CAAGATTTTGTCCTCATTATAACCCAA 58.252 33.333 0.00 0.00 0.00 4.12
764 1300 8.112822 TCAAGATTTTGTCCTCATTATAACCCA 58.887 33.333 0.00 0.00 35.73 4.51
765 1301 8.519799 TCAAGATTTTGTCCTCATTATAACCC 57.480 34.615 0.00 0.00 35.73 4.11
771 1307 9.170734 CTCATCTTCAAGATTTTGTCCTCATTA 57.829 33.333 0.00 0.00 31.32 1.90
774 1310 6.772605 TCTCATCTTCAAGATTTTGTCCTCA 58.227 36.000 0.00 0.00 31.32 3.86
775 1311 6.183360 GCTCTCATCTTCAAGATTTTGTCCTC 60.183 42.308 0.00 0.00 31.32 3.71
776 1312 5.647225 GCTCTCATCTTCAAGATTTTGTCCT 59.353 40.000 0.00 0.00 31.32 3.85
777 1313 5.647225 AGCTCTCATCTTCAAGATTTTGTCC 59.353 40.000 0.00 0.00 31.32 4.02
778 1314 6.740411 AGCTCTCATCTTCAAGATTTTGTC 57.260 37.500 0.00 0.00 31.32 3.18
780 1316 7.201626 CCAGTAGCTCTCATCTTCAAGATTTTG 60.202 40.741 0.00 0.00 31.32 2.44
784 1320 5.207354 TCCAGTAGCTCTCATCTTCAAGAT 58.793 41.667 0.00 0.00 34.74 2.40
785 1321 4.604156 TCCAGTAGCTCTCATCTTCAAGA 58.396 43.478 0.00 0.00 0.00 3.02
786 1322 4.998671 TCCAGTAGCTCTCATCTTCAAG 57.001 45.455 0.00 0.00 0.00 3.02
787 1323 5.188555 ACATTCCAGTAGCTCTCATCTTCAA 59.811 40.000 0.00 0.00 0.00 2.69
789 1325 5.049167 CACATTCCAGTAGCTCTCATCTTC 58.951 45.833 0.00 0.00 0.00 2.87
790 1326 4.713814 TCACATTCCAGTAGCTCTCATCTT 59.286 41.667 0.00 0.00 0.00 2.40
791 1327 4.285020 TCACATTCCAGTAGCTCTCATCT 58.715 43.478 0.00 0.00 0.00 2.90
792 1328 4.662468 TCACATTCCAGTAGCTCTCATC 57.338 45.455 0.00 0.00 0.00 2.92
794 1330 6.544928 TTTATCACATTCCAGTAGCTCTCA 57.455 37.500 0.00 0.00 0.00 3.27
795 1331 7.849804 TTTTTATCACATTCCAGTAGCTCTC 57.150 36.000 0.00 0.00 0.00 3.20
823 1359 4.872691 GCTCTCATCTTCAAGATTTTCCGA 59.127 41.667 0.00 0.00 31.32 4.55
824 1360 4.034975 GGCTCTCATCTTCAAGATTTTCCG 59.965 45.833 0.00 0.00 31.32 4.30
830 1366 2.842496 TGGTGGCTCTCATCTTCAAGAT 59.158 45.455 0.00 0.00 34.74 2.40
832 1368 2.235650 TCTGGTGGCTCTCATCTTCAAG 59.764 50.000 0.00 0.00 0.00 3.02
833 1369 2.027745 GTCTGGTGGCTCTCATCTTCAA 60.028 50.000 0.00 0.00 0.00 2.69
834 1370 1.552337 GTCTGGTGGCTCTCATCTTCA 59.448 52.381 0.00 0.00 0.00 3.02
837 1373 0.901124 GTGTCTGGTGGCTCTCATCT 59.099 55.000 0.00 0.00 0.00 2.90
838 1374 0.901124 AGTGTCTGGTGGCTCTCATC 59.099 55.000 0.00 0.00 0.00 2.92
839 1375 0.901124 GAGTGTCTGGTGGCTCTCAT 59.099 55.000 0.00 0.00 0.00 2.90
840 1376 0.178950 AGAGTGTCTGGTGGCTCTCA 60.179 55.000 0.00 0.00 33.51 3.27
841 1377 0.972883 AAGAGTGTCTGGTGGCTCTC 59.027 55.000 0.00 0.00 37.33 3.20
845 1381 2.234908 ACTATGAAGAGTGTCTGGTGGC 59.765 50.000 0.00 0.00 0.00 5.01
865 1419 0.731994 GGGTACGAGAAGAGTCCGAC 59.268 60.000 0.00 0.00 0.00 4.79
868 1422 3.165606 TCGGGTACGAGAAGAGTCC 57.834 57.895 0.00 0.00 45.59 3.85
879 1433 2.332869 GGCGTATCCGTCGGGTAC 59.667 66.667 22.53 22.53 36.15 3.34
880 1434 2.124362 TGGCGTATCCGTCGGGTA 60.124 61.111 12.29 5.61 43.03 3.69
881 1435 3.830192 GTGGCGTATCCGTCGGGT 61.830 66.667 12.29 6.91 43.03 5.28
882 1436 4.918129 CGTGGCGTATCCGTCGGG 62.918 72.222 12.29 0.00 43.03 5.14
885 1439 2.649975 CGACGTGGCGTATCCGTC 60.650 66.667 0.00 0.00 45.49 4.79
886 1440 3.386867 GACGACGTGGCGTATCCGT 62.387 63.158 4.58 6.60 45.72 4.69
888 1442 2.278401 GGACGACGTGGCGTATCC 60.278 66.667 4.58 0.00 45.72 2.59
889 1443 1.298190 GAGGACGACGTGGCGTATC 60.298 63.158 4.58 0.00 45.72 2.24
890 1444 2.768492 GGAGGACGACGTGGCGTAT 61.768 63.158 4.58 0.00 45.72 3.06
893 1447 4.778415 CTGGAGGACGACGTGGCG 62.778 72.222 4.58 0.00 37.29 5.69
895 1449 4.436998 GCCTGGAGGACGACGTGG 62.437 72.222 4.58 0.00 37.39 4.94
896 1450 4.436998 GGCCTGGAGGACGACGTG 62.437 72.222 4.58 0.00 37.39 4.49
947 1501 2.945398 TTTTGGAACGGCAGCGCAAC 62.945 55.000 11.47 0.00 0.00 4.17
948 1502 2.775856 TTTTGGAACGGCAGCGCAA 61.776 52.632 11.47 0.00 0.00 4.85
954 1508 0.891904 GCTAGGGTTTTGGAACGGCA 60.892 55.000 0.00 0.00 36.61 5.69
956 1510 0.963856 GGGCTAGGGTTTTGGAACGG 60.964 60.000 0.00 0.00 36.61 4.44
957 1511 0.963856 GGGGCTAGGGTTTTGGAACG 60.964 60.000 0.00 0.00 36.61 3.95
959 1513 1.074895 TGGGGGCTAGGGTTTTGGAA 61.075 55.000 0.00 0.00 0.00 3.53
961 1515 1.304962 GTGGGGGCTAGGGTTTTGG 60.305 63.158 0.00 0.00 0.00 3.28
962 1516 1.304962 GGTGGGGGCTAGGGTTTTG 60.305 63.158 0.00 0.00 0.00 2.44
963 1517 2.554291 GGGTGGGGGCTAGGGTTTT 61.554 63.158 0.00 0.00 0.00 2.43
967 1521 4.779486 AAGGGGTGGGGGCTAGGG 62.779 72.222 0.00 0.00 0.00 3.53
968 1522 3.097162 GAAGGGGTGGGGGCTAGG 61.097 72.222 0.00 0.00 0.00 3.02
969 1523 3.097162 GGAAGGGGTGGGGGCTAG 61.097 72.222 0.00 0.00 0.00 3.42
970 1524 4.771745 GGGAAGGGGTGGGGGCTA 62.772 72.222 0.00 0.00 0.00 3.93
981 1535 3.661648 CTGGTGGGTGGGGGAAGG 61.662 72.222 0.00 0.00 0.00 3.46
982 1536 1.509548 ATTCTGGTGGGTGGGGGAAG 61.510 60.000 0.00 0.00 0.00 3.46
983 1537 1.467190 ATTCTGGTGGGTGGGGGAA 60.467 57.895 0.00 0.00 0.00 3.97
984 1538 2.212761 ATTCTGGTGGGTGGGGGA 59.787 61.111 0.00 0.00 0.00 4.81
985 1539 2.360191 CATTCTGGTGGGTGGGGG 59.640 66.667 0.00 0.00 0.00 5.40
986 1540 2.360191 CCATTCTGGTGGGTGGGG 59.640 66.667 0.00 0.00 35.55 4.96
987 1541 2.362889 GCCATTCTGGTGGGTGGG 60.363 66.667 0.00 0.00 40.46 4.61
988 1542 2.362889 GGCCATTCTGGTGGGTGG 60.363 66.667 0.00 0.00 40.46 4.61
989 1543 2.751436 CGGCCATTCTGGTGGGTG 60.751 66.667 2.24 0.00 40.46 4.61
990 1544 2.933287 TCGGCCATTCTGGTGGGT 60.933 61.111 2.24 0.00 40.46 4.51
992 1546 2.819595 CGTCGGCCATTCTGGTGG 60.820 66.667 2.24 0.00 40.46 4.61
993 1547 3.499737 GCGTCGGCCATTCTGGTG 61.500 66.667 2.24 0.00 40.46 4.17
1029 1583 4.451150 GTGGATGCGCCGAGGACA 62.451 66.667 4.18 0.00 40.66 4.02
1076 1630 2.490217 CCAGGTAGTCGAGCACGG 59.510 66.667 3.11 0.00 40.21 4.94
1077 1631 2.202623 GCCAGGTAGTCGAGCACG 60.203 66.667 0.00 0.00 41.26 5.34
1078 1632 2.184579 GGCCAGGTAGTCGAGCAC 59.815 66.667 0.00 0.00 0.00 4.40
1516 2070 0.173708 GAAGACGAAGCGGATGAGGT 59.826 55.000 0.00 0.00 0.00 3.85
2150 2741 0.381801 GACCACCAACACAGCAGTTG 59.618 55.000 9.04 9.04 46.44 3.16
2186 2781 0.173481 TCCTCGCTGTCATTCCTTCG 59.827 55.000 0.00 0.00 0.00 3.79
2375 2970 2.298729 GTCATACTCATCCAGCTCCTCC 59.701 54.545 0.00 0.00 0.00 4.30
2396 2991 4.838152 CCCTGCATCCGGGACACG 62.838 72.222 3.32 0.00 44.90 4.49
2416 3011 2.282391 GCATCACCTGTGTGCCCA 60.282 61.111 11.36 0.00 42.46 5.36
2546 3141 2.099592 GAGCACTGAGGAGACATCAGAG 59.900 54.545 17.85 12.04 45.80 3.35
2772 3367 8.237267 GCAAAACATGTACTGAGCTAGTAAAAT 58.763 33.333 0.00 0.00 43.24 1.82
2843 3438 3.965379 TCCTTATCGTACACCAAAGCA 57.035 42.857 0.00 0.00 0.00 3.91
2855 3450 1.978542 CCGTATCGGCTTCCTTATCG 58.021 55.000 0.00 0.00 41.17 2.92
2908 3503 3.192633 ACCGAACAAGAACAGCAAACTTT 59.807 39.130 0.00 0.00 0.00 2.66
2914 3509 1.495584 GCGACCGAACAAGAACAGCA 61.496 55.000 0.00 0.00 0.00 4.41
2915 3510 1.204312 GCGACCGAACAAGAACAGC 59.796 57.895 0.00 0.00 0.00 4.40
2916 3511 0.784778 GAGCGACCGAACAAGAACAG 59.215 55.000 0.00 0.00 0.00 3.16
2932 3543 8.436200 CGTATATTTACAATCCTAGCTTTGAGC 58.564 37.037 2.92 0.00 42.84 4.26
2957 3568 3.045601 ACAGTGGGAGTTTCTCAATCG 57.954 47.619 0.00 0.00 31.08 3.34
3012 3625 9.803315 CTATATAATTTCGCTATGTCCTGCTTA 57.197 33.333 0.00 0.00 0.00 3.09
3094 3708 6.215845 ACATAAACAGAAATGTGCAGAAACC 58.784 36.000 0.00 0.00 35.06 3.27
3145 3759 9.658799 ACATATAGATATAGGCACAACATCAAC 57.341 33.333 0.00 0.00 0.00 3.18
3585 4370 2.777832 AGAAGATCCACCAGTTCTGC 57.222 50.000 0.00 0.00 0.00 4.26
3946 4751 9.646427 AGAACAAACAGCTTAAATTACAACAAA 57.354 25.926 0.00 0.00 0.00 2.83
3948 4753 9.944663 CTAGAACAAACAGCTTAAATTACAACA 57.055 29.630 0.00 0.00 0.00 3.33
3997 4804 5.009710 GGAATCAAGCATGTGATGATGTGAT 59.990 40.000 9.70 0.00 38.28 3.06
4053 4860 4.437930 GCACGACTCAAGTACTAATACGGT 60.438 45.833 0.00 0.00 36.33 4.83
4057 4864 4.398358 AGCAGCACGACTCAAGTACTAATA 59.602 41.667 0.00 0.00 0.00 0.98
4075 4882 3.562505 CTCAGTTGATTTGTTCAGCAGC 58.437 45.455 0.00 0.00 37.98 5.25
4097 4904 6.094186 TCGCTACTAGCATGATAATCCTGTAG 59.906 42.308 8.78 3.47 42.58 2.74
4156 4971 6.711277 TGCCAGACAAATCACTAAACTATCT 58.289 36.000 0.00 0.00 0.00 1.98
4240 5055 6.737254 ATTACAAATTGTTCTCCCAGTACG 57.263 37.500 3.17 0.00 0.00 3.67
4242 5057 8.573035 GTGAAATTACAAATTGTTCTCCCAGTA 58.427 33.333 3.17 0.00 0.00 2.74
4357 6278 3.661944 CTGATATCAGCATCCACACTCC 58.338 50.000 19.47 0.00 37.15 3.85
4411 6332 2.271800 CGTTGTATCTCCAACTCTGCC 58.728 52.381 0.00 0.00 42.00 4.85
4507 6752 1.226773 GTGGATGCCTTCAATGCGC 60.227 57.895 0.00 0.00 0.00 6.09
5067 7422 1.428869 ACTTGGGAGCTTCAGTGAGT 58.571 50.000 0.00 0.00 0.00 3.41
5068 7423 2.149578 CAACTTGGGAGCTTCAGTGAG 58.850 52.381 0.00 0.00 0.00 3.51
5312 7675 3.510360 TCTTTCTTTCTCCAGGACTACGG 59.490 47.826 0.00 0.00 0.00 4.02
5661 8193 3.691118 ACATGTAAATCAGCAGCAACGAT 59.309 39.130 0.00 0.00 0.00 3.73
5716 8252 3.763360 CTGTTGATGGCTTATGGGTCAAA 59.237 43.478 0.00 0.00 31.38 2.69
5724 8260 3.197766 TCTCCGTTCTGTTGATGGCTTAT 59.802 43.478 0.00 0.00 0.00 1.73
5806 8342 3.746492 ACTCTGTAATTCTTGGCGTTGTC 59.254 43.478 0.00 0.00 0.00 3.18
5882 8418 1.888436 TTGAGCCCGTGTGAGCCTAG 61.888 60.000 0.00 0.00 0.00 3.02
5941 8477 2.084844 GCAGACACTTGCAGATCCG 58.915 57.895 0.00 0.00 43.53 4.18
5981 8517 1.372501 AACAATCACCTACAGGGCCT 58.627 50.000 0.00 0.00 40.27 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.