Multiple sequence alignment - TraesCS4D01G363700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G363700 chr4D 100.000 4603 0 0 1 4603 509178736 509174134 0.000000e+00 8501
1 TraesCS4D01G363700 chr4D 87.603 121 12 2 4168 4287 446988548 446988430 2.230000e-28 137
2 TraesCS4D01G363700 chr4B 89.893 1029 73 17 2696 3709 657990837 657991849 0.000000e+00 1295
3 TraesCS4D01G363700 chr4B 89.613 905 69 14 3709 4603 657991899 657992788 0.000000e+00 1127
4 TraesCS4D01G363700 chr4B 85.270 869 81 21 103 936 657988360 657989216 0.000000e+00 852
5 TraesCS4D01G363700 chr4B 89.608 664 54 10 1727 2387 657990108 657990759 0.000000e+00 830
6 TraesCS4D01G363700 chr4B 86.031 451 21 27 941 1361 657989272 657989710 3.270000e-121 446
7 TraesCS4D01G363700 chr5A 81.963 1253 148 46 2455 3675 697886077 697884871 0.000000e+00 990
8 TraesCS4D01G363700 chr5A 88.227 722 57 17 3709 4418 697884786 697884081 0.000000e+00 837
9 TraesCS4D01G363700 chr5A 85.569 686 57 23 1704 2387 697886880 697886235 0.000000e+00 680
10 TraesCS4D01G363700 chr5A 91.850 454 24 6 3709 4156 697880576 697880130 5.060000e-174 621
11 TraesCS4D01G363700 chr5A 87.862 552 23 24 957 1474 697887613 697887072 3.940000e-170 608
12 TraesCS4D01G363700 chr5A 89.487 409 37 5 4197 4603 697880119 697879715 3.180000e-141 512
13 TraesCS4D01G363700 chr5A 83.948 542 60 15 3076 3604 697881368 697880841 1.150000e-135 494
14 TraesCS4D01G363700 chr5A 88.259 247 24 3 135 380 697891264 697891022 1.620000e-74 291
15 TraesCS4D01G363700 chr5A 83.587 329 33 15 2698 3013 697881690 697881370 5.830000e-74 289
16 TraesCS4D01G363700 chr5A 80.050 401 54 19 462 845 697890996 697890605 1.630000e-69 274
17 TraesCS4D01G363700 chr5A 93.443 183 9 1 4420 4602 697884001 697883822 7.590000e-68 268
18 TraesCS4D01G363700 chr5A 89.815 108 10 1 4168 4274 653892752 653892859 2.230000e-28 137
19 TraesCS4D01G363700 chr7B 77.356 658 86 38 3744 4364 674784348 674783717 9.550000e-87 331
20 TraesCS4D01G363700 chr7B 92.035 113 2 3 1268 1374 746833579 746833468 7.980000e-33 152
21 TraesCS4D01G363700 chr7D 89.630 135 5 5 1268 1402 524948841 524948716 3.680000e-36 163
22 TraesCS4D01G363700 chr3D 97.872 94 1 1 1268 1361 432360230 432360138 1.330000e-35 161
23 TraesCS4D01G363700 chr6B 92.920 113 2 2 1268 1374 254998950 254998838 4.770000e-35 159
24 TraesCS4D01G363700 chr6B 88.983 118 10 2 4171 4287 18675355 18675240 4.800000e-30 143
25 TraesCS4D01G363700 chr3A 92.035 113 3 2 1268 1374 409871464 409871576 2.220000e-33 154
26 TraesCS4D01G363700 chr5B 90.265 113 5 2 1268 1374 557759748 557759636 4.800000e-30 143
27 TraesCS4D01G363700 chr3B 88.430 121 11 2 4168 4287 755565455 755565337 4.800000e-30 143
28 TraesCS4D01G363700 chr2A 90.265 113 5 2 1268 1374 250624047 250623935 4.800000e-30 143
29 TraesCS4D01G363700 chr2B 89.908 109 10 1 4167 4274 225356250 225356358 6.210000e-29 139
30 TraesCS4D01G363700 chr4A 87.603 121 12 2 4168 4287 513315221 513315103 2.230000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G363700 chr4D 509174134 509178736 4602 True 8501.000000 8501 100.000000 1 4603 1 chr4D.!!$R2 4602
1 TraesCS4D01G363700 chr4B 657988360 657992788 4428 False 910.000000 1295 88.083000 103 4603 5 chr4B.!!$F1 4500
2 TraesCS4D01G363700 chr5A 697879715 697891264 11549 True 533.090909 990 86.749545 135 4603 11 chr5A.!!$R1 4468
3 TraesCS4D01G363700 chr7B 674783717 674784348 631 True 331.000000 331 77.356000 3744 4364 1 chr7B.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 674 0.170784 TTAACTCATACGCGACGGCA 59.829 50.0 15.93 0.0 39.92 5.69 F
1483 4468 0.040058 AATTGCACATCAGCCCCTCA 59.960 50.0 0.00 0.0 0.00 3.86 F
1679 4766 0.037790 AGTGTCTCTTCCTTGCGAGC 60.038 55.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 4630 0.038892 GTACGGCTCGGAACTGAACA 60.039 55.0 0.00 0.0 0.00 3.18 R
2795 6006 0.690762 TTCCTCCTTTGAACGAGGGG 59.309 55.0 7.45 0.0 44.99 4.79 R
3608 11056 0.892755 ACCTAATGGCTCGACGTGAA 59.107 50.0 0.00 0.0 36.63 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.967332 TTTGGAAGGGTCTACGTAAGG 57.033 47.619 0.00 0.00 46.39 2.69
21 22 1.188863 TGGAAGGGTCTACGTAAGGC 58.811 55.000 0.00 0.00 46.39 4.35
22 23 1.272872 TGGAAGGGTCTACGTAAGGCT 60.273 52.381 0.00 0.00 46.39 4.58
23 24 1.829849 GGAAGGGTCTACGTAAGGCTT 59.170 52.381 4.58 4.58 46.39 4.35
24 25 3.026694 GGAAGGGTCTACGTAAGGCTTA 58.973 50.000 2.04 2.04 46.39 3.09
25 26 3.181482 GGAAGGGTCTACGTAAGGCTTAC 60.181 52.174 24.27 24.27 46.39 2.34
26 27 3.091633 AGGGTCTACGTAAGGCTTACA 57.908 47.619 30.67 15.64 46.39 2.41
27 28 2.757314 AGGGTCTACGTAAGGCTTACAC 59.243 50.000 30.67 22.13 46.39 2.90
28 29 2.159184 GGGTCTACGTAAGGCTTACACC 60.159 54.545 30.67 27.80 46.39 4.16
29 30 2.159184 GGTCTACGTAAGGCTTACACCC 60.159 54.545 30.67 19.69 46.39 4.61
30 31 2.493278 GTCTACGTAAGGCTTACACCCA 59.507 50.000 30.67 14.84 46.39 4.51
31 32 2.493278 TCTACGTAAGGCTTACACCCAC 59.507 50.000 30.67 11.21 46.39 4.61
32 33 1.050204 ACGTAAGGCTTACACCCACA 58.950 50.000 30.67 0.00 46.39 4.17
33 34 1.626825 ACGTAAGGCTTACACCCACAT 59.373 47.619 30.67 9.17 46.39 3.21
34 35 2.006888 CGTAAGGCTTACACCCACATG 58.993 52.381 30.67 12.72 35.89 3.21
35 36 2.354303 CGTAAGGCTTACACCCACATGA 60.354 50.000 30.67 0.00 35.89 3.07
36 37 2.969821 AAGGCTTACACCCACATGAA 57.030 45.000 0.00 0.00 0.00 2.57
37 38 3.456380 AAGGCTTACACCCACATGAAT 57.544 42.857 0.00 0.00 0.00 2.57
38 39 2.726821 AGGCTTACACCCACATGAATG 58.273 47.619 0.00 0.00 0.00 2.67
39 40 2.308570 AGGCTTACACCCACATGAATGA 59.691 45.455 0.00 0.00 0.00 2.57
40 41 3.053395 AGGCTTACACCCACATGAATGAT 60.053 43.478 0.00 0.00 0.00 2.45
41 42 3.701040 GGCTTACACCCACATGAATGATT 59.299 43.478 0.00 0.00 0.00 2.57
42 43 4.160252 GGCTTACACCCACATGAATGATTT 59.840 41.667 0.00 0.00 0.00 2.17
43 44 5.343249 GCTTACACCCACATGAATGATTTC 58.657 41.667 0.00 0.00 0.00 2.17
44 45 5.126061 GCTTACACCCACATGAATGATTTCT 59.874 40.000 0.00 0.00 32.78 2.52
45 46 6.513806 TTACACCCACATGAATGATTTCTG 57.486 37.500 0.00 0.00 32.78 3.02
46 47 3.194116 ACACCCACATGAATGATTTCTGC 59.806 43.478 0.00 0.00 32.78 4.26
47 48 3.446161 CACCCACATGAATGATTTCTGCT 59.554 43.478 0.00 0.00 32.78 4.24
48 49 4.641541 CACCCACATGAATGATTTCTGCTA 59.358 41.667 0.00 0.00 32.78 3.49
49 50 5.301045 CACCCACATGAATGATTTCTGCTAT 59.699 40.000 0.00 0.00 32.78 2.97
50 51 5.301045 ACCCACATGAATGATTTCTGCTATG 59.699 40.000 0.00 0.00 32.78 2.23
51 52 5.220381 CCACATGAATGATTTCTGCTATGC 58.780 41.667 0.00 0.00 32.78 3.14
52 53 5.220381 CACATGAATGATTTCTGCTATGCC 58.780 41.667 0.00 0.00 32.78 4.40
53 54 4.891168 ACATGAATGATTTCTGCTATGCCA 59.109 37.500 0.00 0.00 32.78 4.92
54 55 5.361571 ACATGAATGATTTCTGCTATGCCAA 59.638 36.000 0.00 0.00 32.78 4.52
55 56 5.918426 TGAATGATTTCTGCTATGCCAAA 57.082 34.783 0.00 0.00 32.78 3.28
56 57 6.283544 TGAATGATTTCTGCTATGCCAAAA 57.716 33.333 0.00 0.00 32.78 2.44
57 58 6.699366 TGAATGATTTCTGCTATGCCAAAAA 58.301 32.000 0.00 0.00 32.78 1.94
58 59 6.814644 TGAATGATTTCTGCTATGCCAAAAAG 59.185 34.615 0.00 0.00 32.78 2.27
59 60 5.981088 TGATTTCTGCTATGCCAAAAAGA 57.019 34.783 0.00 0.00 0.00 2.52
60 61 6.534475 TGATTTCTGCTATGCCAAAAAGAT 57.466 33.333 0.00 0.00 0.00 2.40
61 62 6.334989 TGATTTCTGCTATGCCAAAAAGATG 58.665 36.000 0.00 0.00 0.00 2.90
62 63 4.724074 TTCTGCTATGCCAAAAAGATGG 57.276 40.909 0.00 0.00 43.70 3.51
63 64 3.025978 TCTGCTATGCCAAAAAGATGGG 58.974 45.455 0.00 0.00 41.01 4.00
64 65 2.101917 CTGCTATGCCAAAAAGATGGGG 59.898 50.000 0.00 0.00 41.01 4.96
65 66 1.413812 GCTATGCCAAAAAGATGGGGG 59.586 52.381 0.00 0.00 41.01 5.40
94 95 4.410400 GGGACGGGTGGGCAAGAG 62.410 72.222 0.00 0.00 0.00 2.85
95 96 3.319198 GGACGGGTGGGCAAGAGA 61.319 66.667 0.00 0.00 0.00 3.10
96 97 2.670148 GGACGGGTGGGCAAGAGAT 61.670 63.158 0.00 0.00 0.00 2.75
97 98 1.299976 GACGGGTGGGCAAGAGATT 59.700 57.895 0.00 0.00 0.00 2.40
98 99 0.539986 GACGGGTGGGCAAGAGATTA 59.460 55.000 0.00 0.00 0.00 1.75
99 100 0.252197 ACGGGTGGGCAAGAGATTAC 59.748 55.000 0.00 0.00 0.00 1.89
100 101 0.251916 CGGGTGGGCAAGAGATTACA 59.748 55.000 0.00 0.00 0.00 2.41
101 102 1.743772 CGGGTGGGCAAGAGATTACAG 60.744 57.143 0.00 0.00 0.00 2.74
102 103 1.408822 GGGTGGGCAAGAGATTACAGG 60.409 57.143 0.00 0.00 0.00 4.00
103 104 1.408822 GGTGGGCAAGAGATTACAGGG 60.409 57.143 0.00 0.00 0.00 4.45
104 105 0.918983 TGGGCAAGAGATTACAGGGG 59.081 55.000 0.00 0.00 0.00 4.79
105 106 0.183731 GGGCAAGAGATTACAGGGGG 59.816 60.000 0.00 0.00 0.00 5.40
158 159 3.243737 CCTTGCCCACAGAAAAACTAACC 60.244 47.826 0.00 0.00 0.00 2.85
160 161 1.335597 GCCCACAGAAAAACTAACCGC 60.336 52.381 0.00 0.00 0.00 5.68
169 170 3.898517 AAAACTAACCGCAGAGAAAGC 57.101 42.857 0.00 0.00 0.00 3.51
193 194 3.059597 GGAGAAACAATGACGCCGATATG 60.060 47.826 0.00 0.00 0.00 1.78
206 207 4.019867 CGCCGATATGAAAGAACGAAAAC 58.980 43.478 0.00 0.00 0.00 2.43
219 220 4.273724 AGAACGAAAACAAAGAGGAAGCTC 59.726 41.667 0.00 0.00 0.00 4.09
227 228 2.021355 AAGAGGAAGCTCGATGCAAG 57.979 50.000 9.09 0.00 45.94 4.01
228 229 0.177604 AGAGGAAGCTCGATGCAAGG 59.822 55.000 9.09 0.00 45.94 3.61
267 268 8.246180 GGAAAGAGATCACTGCAATTTATTTCA 58.754 33.333 8.75 0.00 0.00 2.69
303 305 4.581868 TCCGGTAAATCGAAGATGGTTTT 58.418 39.130 0.00 0.00 45.12 2.43
304 306 5.005094 TCCGGTAAATCGAAGATGGTTTTT 58.995 37.500 0.00 0.00 45.12 1.94
345 347 6.295236 CCCTTTGAAGCTCATTTAAACATCCA 60.295 38.462 0.00 0.00 0.00 3.41
416 436 2.703007 AGAGAGAGAGAGAGAGAGCTCC 59.297 54.545 10.93 1.70 42.30 4.70
417 437 1.414181 AGAGAGAGAGAGAGAGCTCCG 59.586 57.143 10.93 0.00 42.30 4.63
450 475 5.130477 AGTGGTTATTCTATCCCGTGAATGT 59.870 40.000 0.00 0.00 35.01 2.71
452 477 5.104693 TGGTTATTCTATCCCGTGAATGTGT 60.105 40.000 0.00 0.00 35.01 3.72
460 485 0.740868 CCGTGAATGTGTCCATCGCT 60.741 55.000 0.00 0.00 0.00 4.93
598 628 7.798596 TGTTTCATTGTGTGCCAATAAAAAT 57.201 28.000 0.00 0.00 41.93 1.82
600 630 8.986847 TGTTTCATTGTGTGCCAATAAAAATAG 58.013 29.630 0.00 0.00 41.93 1.73
640 672 1.194495 GGTTAACTCATACGCGACGG 58.806 55.000 15.93 0.29 0.00 4.79
642 674 0.170784 TTAACTCATACGCGACGGCA 59.829 50.000 15.93 0.00 39.92 5.69
644 676 2.202557 CTCATACGCGACGGCACA 60.203 61.111 15.93 0.00 39.92 4.57
648 680 0.586256 CATACGCGACGGCACAAATG 60.586 55.000 15.93 0.00 39.92 2.32
688 734 5.472137 TCTGAAATAAGAAGAAAACACCCGG 59.528 40.000 0.00 0.00 0.00 5.73
695 741 1.187087 AGAAAACACCCGGTGCAAAA 58.813 45.000 17.99 0.00 36.98 2.44
696 742 1.760029 AGAAAACACCCGGTGCAAAAT 59.240 42.857 17.99 0.00 36.98 1.82
697 743 1.864082 GAAAACACCCGGTGCAAAATG 59.136 47.619 17.99 0.00 36.98 2.32
698 744 1.115467 AAACACCCGGTGCAAAATGA 58.885 45.000 17.99 0.00 36.98 2.57
699 745 0.673437 AACACCCGGTGCAAAATGAG 59.327 50.000 17.99 0.00 36.98 2.90
702 748 1.068333 CACCCGGTGCAAAATGAGAAG 60.068 52.381 4.16 0.00 0.00 2.85
703 749 0.527565 CCCGGTGCAAAATGAGAAGG 59.472 55.000 0.00 0.00 0.00 3.46
708 754 3.181503 CGGTGCAAAATGAGAAGGATCTG 60.182 47.826 0.00 0.00 35.54 2.90
723 769 3.138653 AGGATCTGGTACCGTCTATGAGT 59.861 47.826 7.57 0.00 0.00 3.41
733 779 3.449018 ACCGTCTATGAGTGCTTTGAGAT 59.551 43.478 0.00 0.00 0.00 2.75
786 832 4.551126 CGAATTCGTCATGTTTCAAAGCTC 59.449 41.667 19.67 0.00 34.11 4.09
787 833 5.615544 CGAATTCGTCATGTTTCAAAGCTCT 60.616 40.000 19.67 0.00 34.11 4.09
806 852 7.588497 AGCTCTACATTGTTTTTCCTTTCTT 57.412 32.000 0.00 0.00 0.00 2.52
852 898 7.408132 TTTCTCATACACTTTGAAACGAGAG 57.592 36.000 0.00 0.00 30.55 3.20
899 3779 8.660968 TTTTGAAACACGGCAAATTTAAAAAG 57.339 26.923 0.00 0.00 34.36 2.27
900 3780 5.801012 TGAAACACGGCAAATTTAAAAAGC 58.199 33.333 0.00 0.00 0.00 3.51
902 3782 5.803020 AACACGGCAAATTTAAAAAGCAA 57.197 30.435 10.67 0.00 0.00 3.91
903 3783 6.370433 AACACGGCAAATTTAAAAAGCAAT 57.630 29.167 10.67 0.00 0.00 3.56
904 3784 7.484035 AACACGGCAAATTTAAAAAGCAATA 57.516 28.000 10.67 0.00 0.00 1.90
905 3785 7.484035 ACACGGCAAATTTAAAAAGCAATAA 57.516 28.000 10.67 0.00 0.00 1.40
906 3786 7.571892 ACACGGCAAATTTAAAAAGCAATAAG 58.428 30.769 10.67 2.02 0.00 1.73
930 3810 4.335315 AGAACAACACGAATCTCAAAGCAA 59.665 37.500 0.00 0.00 0.00 3.91
931 3811 3.952535 ACAACACGAATCTCAAAGCAAC 58.047 40.909 0.00 0.00 0.00 4.17
932 3812 3.376859 ACAACACGAATCTCAAAGCAACA 59.623 39.130 0.00 0.00 0.00 3.33
933 3813 4.036734 ACAACACGAATCTCAAAGCAACAT 59.963 37.500 0.00 0.00 0.00 2.71
934 3814 4.151258 ACACGAATCTCAAAGCAACATG 57.849 40.909 0.00 0.00 0.00 3.21
955 3892 1.965930 GCTGTGGTGCGATCCAACA 60.966 57.895 0.72 0.00 39.29 3.33
977 3914 4.157120 CACCCACCGGACCCGATC 62.157 72.222 9.46 0.00 42.83 3.69
978 3915 4.393778 ACCCACCGGACCCGATCT 62.394 66.667 9.46 0.00 42.83 2.75
990 3927 0.464452 CCCGATCTACTCCACCAACC 59.536 60.000 0.00 0.00 0.00 3.77
991 3928 1.191535 CCGATCTACTCCACCAACCA 58.808 55.000 0.00 0.00 0.00 3.67
992 3929 1.137086 CCGATCTACTCCACCAACCAG 59.863 57.143 0.00 0.00 0.00 4.00
997 3934 0.250124 TACTCCACCAACCAGCAACG 60.250 55.000 0.00 0.00 0.00 4.10
1003 3944 0.745128 ACCAACCAGCAACGAACGAA 60.745 50.000 0.14 0.00 0.00 3.85
1006 3947 1.441732 AACCAGCAACGAACGAACCC 61.442 55.000 0.14 0.00 0.00 4.11
1007 3948 1.890041 CCAGCAACGAACGAACCCA 60.890 57.895 0.14 0.00 0.00 4.51
1175 4128 3.072468 CCCGTACGCCCCTTCTCA 61.072 66.667 10.49 0.00 0.00 3.27
1176 4129 2.432300 CCCGTACGCCCCTTCTCAT 61.432 63.158 10.49 0.00 0.00 2.90
1178 4131 0.107848 CCGTACGCCCCTTCTCATTT 60.108 55.000 10.49 0.00 0.00 2.32
1180 4133 2.081462 CGTACGCCCCTTCTCATTTTT 58.919 47.619 0.52 0.00 0.00 1.94
1226 4200 2.771089 GATGTGAGTGAGTTTCCTGCA 58.229 47.619 0.00 0.00 0.00 4.41
1227 4201 2.936919 TGTGAGTGAGTTTCCTGCAT 57.063 45.000 0.00 0.00 0.00 3.96
1229 4203 1.198637 GTGAGTGAGTTTCCTGCATGC 59.801 52.381 11.82 11.82 0.00 4.06
1230 4204 1.072806 TGAGTGAGTTTCCTGCATGCT 59.927 47.619 20.33 0.00 0.00 3.79
1365 4349 2.722201 CCGCAGGTACTCCCTCACC 61.722 68.421 0.00 0.00 43.86 4.02
1368 4352 2.058595 CAGGTACTCCCTCACCCCG 61.059 68.421 0.00 0.00 43.86 5.73
1422 4406 5.132816 CCTCCCATTTCTTTATCCACCTACT 59.867 44.000 0.00 0.00 0.00 2.57
1424 4408 7.133133 TCCCATTTCTTTATCCACCTACTAC 57.867 40.000 0.00 0.00 0.00 2.73
1446 4431 0.669932 CAGCCAGTCTGTCAGTCAGC 60.670 60.000 0.00 2.22 43.32 4.26
1470 4455 0.865111 CACCTGTTCGACGAATTGCA 59.135 50.000 14.27 6.39 0.00 4.08
1474 4459 2.474526 CCTGTTCGACGAATTGCACATC 60.475 50.000 14.27 0.00 0.00 3.06
1475 4460 2.139118 TGTTCGACGAATTGCACATCA 58.861 42.857 14.27 1.33 0.00 3.07
1478 4463 0.247814 CGACGAATTGCACATCAGCC 60.248 55.000 0.00 0.00 0.00 4.85
1479 4464 0.099436 GACGAATTGCACATCAGCCC 59.901 55.000 0.00 0.00 0.00 5.19
1480 4465 1.315257 ACGAATTGCACATCAGCCCC 61.315 55.000 0.00 0.00 0.00 5.80
1481 4466 1.033746 CGAATTGCACATCAGCCCCT 61.034 55.000 0.00 0.00 0.00 4.79
1482 4467 0.743097 GAATTGCACATCAGCCCCTC 59.257 55.000 0.00 0.00 0.00 4.30
1483 4468 0.040058 AATTGCACATCAGCCCCTCA 59.960 50.000 0.00 0.00 0.00 3.86
1484 4469 0.395311 ATTGCACATCAGCCCCTCAG 60.395 55.000 0.00 0.00 0.00 3.35
1486 4471 1.748122 GCACATCAGCCCCTCAGTG 60.748 63.158 0.00 0.00 0.00 3.66
1496 4481 0.911769 CCCCTCAGTGGCATTACAGA 59.088 55.000 0.00 0.00 0.00 3.41
1497 4482 1.492176 CCCCTCAGTGGCATTACAGAT 59.508 52.381 0.00 0.00 0.00 2.90
1498 4483 2.092212 CCCCTCAGTGGCATTACAGATT 60.092 50.000 0.00 0.00 0.00 2.40
1499 4484 3.136443 CCCCTCAGTGGCATTACAGATTA 59.864 47.826 0.00 0.00 0.00 1.75
1500 4485 4.202503 CCCCTCAGTGGCATTACAGATTAT 60.203 45.833 0.00 0.00 0.00 1.28
1501 4486 4.758674 CCCTCAGTGGCATTACAGATTATG 59.241 45.833 0.00 0.00 0.00 1.90
1502 4487 4.214971 CCTCAGTGGCATTACAGATTATGC 59.785 45.833 0.00 0.00 44.93 3.14
1503 4488 4.779696 TCAGTGGCATTACAGATTATGCA 58.220 39.130 9.02 0.00 46.91 3.96
1504 4489 4.818005 TCAGTGGCATTACAGATTATGCAG 59.182 41.667 9.02 0.00 46.91 4.41
1505 4490 4.577693 CAGTGGCATTACAGATTATGCAGT 59.422 41.667 9.02 0.00 46.91 4.40
1506 4491 5.759763 CAGTGGCATTACAGATTATGCAGTA 59.240 40.000 9.02 0.00 46.91 2.74
1507 4492 5.760253 AGTGGCATTACAGATTATGCAGTAC 59.240 40.000 9.02 5.25 46.91 2.73
1508 4493 4.749598 TGGCATTACAGATTATGCAGTACG 59.250 41.667 9.02 0.00 46.91 3.67
1509 4494 4.750098 GGCATTACAGATTATGCAGTACGT 59.250 41.667 9.02 0.00 46.91 3.57
1510 4495 5.924254 GGCATTACAGATTATGCAGTACGTA 59.076 40.000 9.02 0.00 46.91 3.57
1511 4496 6.089551 GGCATTACAGATTATGCAGTACGTAG 59.910 42.308 0.00 0.00 46.91 3.51
1512 4497 6.641314 GCATTACAGATTATGCAGTACGTAGT 59.359 38.462 0.00 0.00 44.99 2.73
1513 4498 7.806487 GCATTACAGATTATGCAGTACGTAGTA 59.194 37.037 1.81 0.00 44.99 1.82
1526 4511 2.916640 ACGTAGTACTCTCACCCTAGC 58.083 52.381 0.00 0.00 41.94 3.42
1528 4513 2.158784 CGTAGTACTCTCACCCTAGCCT 60.159 54.545 0.00 0.00 0.00 4.58
1536 4521 1.415659 CTCACCCTAGCCTTCTCATGG 59.584 57.143 0.00 0.00 0.00 3.66
1542 4527 3.741860 GCCTTCTCATGGCGATGG 58.258 61.111 8.98 11.17 41.03 3.51
1543 4528 2.550101 GCCTTCTCATGGCGATGGC 61.550 63.158 19.39 19.39 42.19 4.40
1544 4529 2.249535 CCTTCTCATGGCGATGGCG 61.250 63.158 8.98 1.09 41.24 5.69
1545 4530 2.203056 TTCTCATGGCGATGGCGG 60.203 61.111 8.98 0.56 41.24 6.13
1564 4586 0.744771 GCCCGGGTGAAATCACTCTC 60.745 60.000 24.63 0.00 44.96 3.20
1568 4590 3.146066 CCGGGTGAAATCACTCTCAAAA 58.854 45.455 11.40 0.00 44.96 2.44
1595 4629 5.467035 TTTTTGTTCCCATCACAATCTCC 57.533 39.130 0.00 0.00 34.13 3.71
1596 4630 4.387026 TTTGTTCCCATCACAATCTCCT 57.613 40.909 0.00 0.00 34.13 3.69
1597 4631 3.354948 TGTTCCCATCACAATCTCCTG 57.645 47.619 0.00 0.00 0.00 3.86
1598 4632 2.644299 TGTTCCCATCACAATCTCCTGT 59.356 45.455 0.00 0.00 0.00 4.00
1599 4633 3.074390 TGTTCCCATCACAATCTCCTGTT 59.926 43.478 0.00 0.00 0.00 3.16
1600 4634 3.634397 TCCCATCACAATCTCCTGTTC 57.366 47.619 0.00 0.00 0.00 3.18
1601 4635 2.912295 TCCCATCACAATCTCCTGTTCA 59.088 45.455 0.00 0.00 0.00 3.18
1602 4636 3.054875 TCCCATCACAATCTCCTGTTCAG 60.055 47.826 0.00 0.00 0.00 3.02
1604 4638 4.330250 CCATCACAATCTCCTGTTCAGTT 58.670 43.478 0.00 0.00 0.00 3.16
1605 4639 4.394300 CCATCACAATCTCCTGTTCAGTTC 59.606 45.833 0.00 0.00 0.00 3.01
1606 4640 4.008074 TCACAATCTCCTGTTCAGTTCC 57.992 45.455 0.00 0.00 0.00 3.62
1607 4641 2.738846 CACAATCTCCTGTTCAGTTCCG 59.261 50.000 0.00 0.00 0.00 4.30
1608 4642 2.632996 ACAATCTCCTGTTCAGTTCCGA 59.367 45.455 0.00 0.00 0.00 4.55
1609 4643 3.257393 CAATCTCCTGTTCAGTTCCGAG 58.743 50.000 0.00 0.00 0.00 4.63
1611 4645 0.390472 CTCCTGTTCAGTTCCGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
1612 4646 1.738099 CCTGTTCAGTTCCGAGCCG 60.738 63.158 0.00 0.00 0.00 5.52
1613 4647 1.006102 CTGTTCAGTTCCGAGCCGT 60.006 57.895 0.00 0.00 0.00 5.68
1614 4648 0.242825 CTGTTCAGTTCCGAGCCGTA 59.757 55.000 0.00 0.00 0.00 4.02
1616 4650 0.243095 GTTCAGTTCCGAGCCGTACT 59.757 55.000 0.00 0.00 0.00 2.73
1617 4651 0.524862 TTCAGTTCCGAGCCGTACTC 59.475 55.000 0.00 0.00 42.47 2.59
1620 4654 1.948145 CAGTTCCGAGCCGTACTCTAT 59.052 52.381 1.75 0.00 43.85 1.98
1622 4656 2.617774 AGTTCCGAGCCGTACTCTATTC 59.382 50.000 1.75 0.00 43.85 1.75
1623 4657 1.602311 TCCGAGCCGTACTCTATTCC 58.398 55.000 1.75 0.00 43.85 3.01
1624 4658 1.142465 TCCGAGCCGTACTCTATTCCT 59.858 52.381 1.75 0.00 43.85 3.36
1625 4659 1.267261 CCGAGCCGTACTCTATTCCTG 59.733 57.143 1.75 0.00 43.85 3.86
1626 4660 1.335142 CGAGCCGTACTCTATTCCTGC 60.335 57.143 1.75 0.00 43.85 4.85
1627 4661 0.669077 AGCCGTACTCTATTCCTGCG 59.331 55.000 0.00 0.00 0.00 5.18
1629 4663 1.202382 GCCGTACTCTATTCCTGCGTT 60.202 52.381 0.00 0.00 0.00 4.84
1630 4664 2.033801 GCCGTACTCTATTCCTGCGTTA 59.966 50.000 0.00 0.00 0.00 3.18
1631 4665 3.852572 GCCGTACTCTATTCCTGCGTTAG 60.853 52.174 0.00 0.00 0.00 2.34
1632 4666 3.314635 CCGTACTCTATTCCTGCGTTAGT 59.685 47.826 0.00 0.00 0.00 2.24
1633 4667 4.201990 CCGTACTCTATTCCTGCGTTAGTT 60.202 45.833 0.00 0.00 0.00 2.24
1634 4668 5.008019 CCGTACTCTATTCCTGCGTTAGTTA 59.992 44.000 0.00 0.00 0.00 2.24
1635 4669 6.293845 CCGTACTCTATTCCTGCGTTAGTTAT 60.294 42.308 0.00 0.00 0.00 1.89
1637 4671 7.743838 CGTACTCTATTCCTGCGTTAGTTATAC 59.256 40.741 0.00 0.00 0.00 1.47
1639 4673 8.179509 ACTCTATTCCTGCGTTAGTTATACAT 57.820 34.615 0.00 0.00 0.00 2.29
1640 4674 8.639761 ACTCTATTCCTGCGTTAGTTATACATT 58.360 33.333 0.00 0.00 0.00 2.71
1647 4681 9.217278 TCCTGCGTTAGTTATACATTACAAAAA 57.783 29.630 0.00 0.00 0.00 1.94
1648 4682 9.997482 CCTGCGTTAGTTATACATTACAAAAAT 57.003 29.630 0.00 0.00 0.00 1.82
1662 4749 8.730680 ACATTACAAAAATAAGATCAGCGAAGT 58.269 29.630 0.00 0.00 0.00 3.01
1664 4751 6.560253 ACAAAAATAAGATCAGCGAAGTGT 57.440 33.333 0.00 0.00 0.00 3.55
1675 4762 0.793250 GCGAAGTGTCTCTTCCTTGC 59.207 55.000 8.67 3.89 46.97 4.01
1679 4766 0.037790 AGTGTCTCTTCCTTGCGAGC 60.038 55.000 0.00 0.00 0.00 5.03
1681 4768 0.392706 TGTCTCTTCCTTGCGAGCAA 59.607 50.000 10.28 10.28 0.00 3.91
1690 4777 2.029838 CTTGCGAGCAAGTTATCCCT 57.970 50.000 24.91 0.00 45.91 4.20
1691 4778 3.179443 CTTGCGAGCAAGTTATCCCTA 57.821 47.619 24.91 0.00 45.91 3.53
1692 4779 2.890808 TGCGAGCAAGTTATCCCTAG 57.109 50.000 0.00 0.00 0.00 3.02
1693 4780 1.412710 TGCGAGCAAGTTATCCCTAGG 59.587 52.381 0.06 0.06 0.00 3.02
1694 4781 1.687123 GCGAGCAAGTTATCCCTAGGA 59.313 52.381 11.48 0.00 35.55 2.94
1695 4782 2.102588 GCGAGCAAGTTATCCCTAGGAA 59.897 50.000 11.48 0.00 34.34 3.36
1696 4783 3.244249 GCGAGCAAGTTATCCCTAGGAAT 60.244 47.826 11.48 0.00 34.34 3.01
1697 4784 4.021368 GCGAGCAAGTTATCCCTAGGAATA 60.021 45.833 11.48 0.00 34.34 1.75
1698 4785 5.510861 GCGAGCAAGTTATCCCTAGGAATAA 60.511 44.000 11.48 2.56 34.34 1.40
1699 4786 6.702329 CGAGCAAGTTATCCCTAGGAATAAT 58.298 40.000 11.48 0.75 34.34 1.28
1700 4787 6.591834 CGAGCAAGTTATCCCTAGGAATAATG 59.408 42.308 11.48 3.60 34.34 1.90
1706 4794 3.402628 TCCCTAGGAATAATGCGCTTC 57.597 47.619 11.48 3.40 0.00 3.86
1716 4804 1.367659 AATGCGCTTCTCTTCAGCTC 58.632 50.000 9.73 0.00 34.88 4.09
1717 4805 0.248565 ATGCGCTTCTCTTCAGCTCA 59.751 50.000 9.73 0.00 36.46 4.26
1719 4807 0.651551 GCGCTTCTCTTCAGCTCATG 59.348 55.000 0.00 0.00 34.88 3.07
1722 4810 1.397692 GCTTCTCTTCAGCTCATGTGC 59.602 52.381 11.79 11.79 34.15 4.57
1795 4883 2.154798 CTTCGCACCGACTTCCTCCA 62.155 60.000 0.00 0.00 34.89 3.86
1813 4901 1.338105 CCATCTGTCGGACTGCTTCAA 60.338 52.381 9.88 0.00 0.00 2.69
1922 5013 2.290577 ACCTCTTCCTTGCACTTCATCC 60.291 50.000 0.00 0.00 0.00 3.51
1971 5064 3.866910 GCCTTTAATGCCACATGTCAATG 59.133 43.478 0.00 0.00 39.89 2.82
1973 5066 5.394005 GCCTTTAATGCCACATGTCAATGTA 60.394 40.000 0.00 0.00 45.50 2.29
2015 5108 9.103048 GTAGTGATTTTGACAAGTATGTTTTCG 57.897 33.333 0.00 0.00 40.74 3.46
2017 5110 7.855904 AGTGATTTTGACAAGTATGTTTTCGTC 59.144 33.333 0.00 0.00 40.74 4.20
2038 5131 4.873259 GTCTTCTTCTTCTAGGACCATTGC 59.127 45.833 0.00 0.00 0.00 3.56
2107 5200 6.003326 TGACATTCATTGTGTGATAAGGTGT 58.997 36.000 0.00 0.00 39.18 4.16
2108 5201 7.164803 TGACATTCATTGTGTGATAAGGTGTA 58.835 34.615 0.00 0.00 39.18 2.90
2118 5211 8.887036 TGTGTGATAAGGTGTATGAATCATAC 57.113 34.615 22.68 22.68 44.74 2.39
2119 5212 8.704668 TGTGTGATAAGGTGTATGAATCATACT 58.295 33.333 27.42 14.17 44.76 2.12
2120 5213 9.547753 GTGTGATAAGGTGTATGAATCATACTT 57.452 33.333 27.42 18.45 44.76 2.24
2140 5233 9.665264 CATACTTTTATAATTCTTTCTTCGGGC 57.335 33.333 0.00 0.00 0.00 6.13
2141 5234 7.939784 ACTTTTATAATTCTTTCTTCGGGCT 57.060 32.000 0.00 0.00 0.00 5.19
2142 5235 8.349568 ACTTTTATAATTCTTTCTTCGGGCTT 57.650 30.769 0.00 0.00 0.00 4.35
2143 5236 8.803235 ACTTTTATAATTCTTTCTTCGGGCTTT 58.197 29.630 0.00 0.00 0.00 3.51
2144 5237 8.980143 TTTTATAATTCTTTCTTCGGGCTTTG 57.020 30.769 0.00 0.00 0.00 2.77
2145 5238 7.696992 TTATAATTCTTTCTTCGGGCTTTGT 57.303 32.000 0.00 0.00 0.00 2.83
2146 5239 4.937201 AATTCTTTCTTCGGGCTTTGTT 57.063 36.364 0.00 0.00 0.00 2.83
2147 5240 7.696992 ATAATTCTTTCTTCGGGCTTTGTTA 57.303 32.000 0.00 0.00 0.00 2.41
2148 5241 4.823790 TTCTTTCTTCGGGCTTTGTTAC 57.176 40.909 0.00 0.00 0.00 2.50
2158 5251 3.245048 CGGGCTTTGTTACTTTTTGCTTG 59.755 43.478 0.00 0.00 0.00 4.01
2164 5257 6.310224 GCTTTGTTACTTTTTGCTTGTCAGAA 59.690 34.615 0.00 0.00 0.00 3.02
2165 5258 7.010460 GCTTTGTTACTTTTTGCTTGTCAGAAT 59.990 33.333 0.00 0.00 0.00 2.40
2166 5259 9.515020 CTTTGTTACTTTTTGCTTGTCAGAATA 57.485 29.630 0.00 0.00 0.00 1.75
2169 5262 7.594758 TGTTACTTTTTGCTTGTCAGAATATGC 59.405 33.333 0.00 0.00 0.00 3.14
2170 5263 6.336842 ACTTTTTGCTTGTCAGAATATGCT 57.663 33.333 0.00 0.00 0.00 3.79
2171 5264 6.154445 ACTTTTTGCTTGTCAGAATATGCTG 58.846 36.000 4.04 4.04 37.24 4.41
2175 5268 3.691118 TGCTTGTCAGAATATGCTGTTCC 59.309 43.478 10.66 1.37 37.20 3.62
2176 5269 3.944015 GCTTGTCAGAATATGCTGTTCCT 59.056 43.478 10.66 0.00 37.20 3.36
2177 5270 4.201891 GCTTGTCAGAATATGCTGTTCCTG 60.202 45.833 10.66 0.88 37.20 3.86
2178 5271 3.877559 TGTCAGAATATGCTGTTCCTGG 58.122 45.455 10.66 0.00 37.20 4.45
2179 5272 3.519107 TGTCAGAATATGCTGTTCCTGGA 59.481 43.478 10.66 0.00 37.20 3.86
2180 5273 4.125703 GTCAGAATATGCTGTTCCTGGAG 58.874 47.826 10.66 0.00 37.20 3.86
2182 5275 4.225942 TCAGAATATGCTGTTCCTGGAGTT 59.774 41.667 10.66 0.00 37.20 3.01
2183 5276 4.946157 CAGAATATGCTGTTCCTGGAGTTT 59.054 41.667 2.05 0.00 0.00 2.66
2195 5288 6.599244 TGTTCCTGGAGTTTATATGCTCTTTG 59.401 38.462 0.00 0.00 32.67 2.77
2305 5398 5.001232 CCAACGACTTCTGGGAATAAAAGA 58.999 41.667 0.00 0.00 0.00 2.52
2309 5402 6.531021 ACGACTTCTGGGAATAAAAGAGAAA 58.469 36.000 0.00 0.00 0.00 2.52
2372 5465 3.937706 GCTGGCAAGATATATGCAGGTAG 59.062 47.826 13.30 7.78 45.60 3.18
2387 5480 3.181510 GCAGGTAGGCTTATTTTGTCACG 60.182 47.826 0.00 0.00 0.00 4.35
2390 5483 3.373130 GGTAGGCTTATTTTGTCACGGTC 59.627 47.826 0.00 0.00 0.00 4.79
2392 5485 3.335579 AGGCTTATTTTGTCACGGTCTC 58.664 45.455 0.00 0.00 0.00 3.36
2394 5487 3.125316 GGCTTATTTTGTCACGGTCTCTG 59.875 47.826 0.00 0.00 0.00 3.35
2397 5490 5.277828 GCTTATTTTGTCACGGTCTCTGTTT 60.278 40.000 0.00 0.00 0.00 2.83
2399 5492 4.609691 TTTTGTCACGGTCTCTGTTTTC 57.390 40.909 0.00 0.00 0.00 2.29
2404 5497 3.626217 GTCACGGTCTCTGTTTTCCTTTT 59.374 43.478 0.00 0.00 0.00 2.27
2405 5498 3.875134 TCACGGTCTCTGTTTTCCTTTTC 59.125 43.478 0.00 0.00 0.00 2.29
2406 5499 3.877508 CACGGTCTCTGTTTTCCTTTTCT 59.122 43.478 0.00 0.00 0.00 2.52
2408 5501 4.948004 ACGGTCTCTGTTTTCCTTTTCTTT 59.052 37.500 0.00 0.00 0.00 2.52
2410 5503 5.971792 CGGTCTCTGTTTTCCTTTTCTTTTC 59.028 40.000 0.00 0.00 0.00 2.29
2424 5526 6.369615 CCTTTTCTTTTCCCTACATTGCAATG 59.630 38.462 32.74 32.74 42.10 2.82
2429 5531 5.404466 TTTCCCTACATTGCAATGGAAAG 57.596 39.130 35.85 28.26 40.70 2.62
2430 5532 4.314522 TCCCTACATTGCAATGGAAAGA 57.685 40.909 35.85 25.68 40.70 2.52
2436 5538 4.644498 ACATTGCAATGGAAAGAAAAGGG 58.356 39.130 35.85 12.61 40.70 3.95
2438 5540 1.000731 TGCAATGGAAAGAAAAGGGCG 59.999 47.619 0.00 0.00 0.00 6.13
2439 5541 1.713597 CAATGGAAAGAAAAGGGCGC 58.286 50.000 0.00 0.00 0.00 6.53
2445 5547 1.923227 AAAGAAAAGGGCGCGCTAGC 61.923 55.000 32.29 18.59 40.74 3.42
2457 5559 2.844811 GCGCTAGCGTCTCATATTTG 57.155 50.000 35.21 6.24 42.09 2.32
2462 5646 5.571741 GCGCTAGCGTCTCATATTTGTATAA 59.428 40.000 35.21 0.00 42.09 0.98
2466 5650 8.436200 GCTAGCGTCTCATATTTGTATAAAAGG 58.564 37.037 0.00 0.00 0.00 3.11
2467 5651 9.477484 CTAGCGTCTCATATTTGTATAAAAGGT 57.523 33.333 0.00 0.00 0.00 3.50
2484 5668 6.358974 AAAAGGTTTGGACTGATATTTGGG 57.641 37.500 0.00 0.00 0.00 4.12
2485 5669 4.675063 AGGTTTGGACTGATATTTGGGT 57.325 40.909 0.00 0.00 0.00 4.51
2497 5681 8.568617 ACTGATATTTGGGTATTTCCTAGAGT 57.431 34.615 0.00 0.00 36.25 3.24
2507 5691 9.615660 TGGGTATTTCCTAGAGTTATGTATGAT 57.384 33.333 0.00 0.00 36.25 2.45
2526 5710 5.369685 TGATTTCTGCAATAAAGTTCGCA 57.630 34.783 0.00 0.00 0.00 5.10
2532 5716 6.435430 TCTGCAATAAAGTTCGCAATATGT 57.565 33.333 0.00 0.00 33.21 2.29
2550 5734 7.404985 CAATATGTGCATATTTAGGAGATCGC 58.595 38.462 13.06 0.00 40.84 4.58
2554 5741 6.701340 TGTGCATATTTAGGAGATCGCTATT 58.299 36.000 0.00 0.00 0.00 1.73
2566 5753 7.398829 AGGAGATCGCTATTCTTGTATCTCTA 58.601 38.462 0.00 0.00 39.39 2.43
2590 5777 6.204852 TGGGGCATATGAATATCTTTGTCT 57.795 37.500 6.97 0.00 0.00 3.41
2594 5781 7.373493 GGGCATATGAATATCTTTGTCTTTGG 58.627 38.462 6.97 0.00 0.00 3.28
2596 5783 6.580041 GCATATGAATATCTTTGTCTTTGGCG 59.420 38.462 6.97 0.00 0.00 5.69
2619 5830 5.451381 CGCCATCAGGTGTACAGACTTTATA 60.451 44.000 0.00 0.00 40.63 0.98
2620 5831 6.525629 GCCATCAGGTGTACAGACTTTATAT 58.474 40.000 0.00 0.00 37.19 0.86
2622 5833 8.148351 GCCATCAGGTGTACAGACTTTATATTA 58.852 37.037 0.00 0.00 37.19 0.98
2662 5873 4.201901 CGCAATACATATTTCTGCCACACA 60.202 41.667 0.00 0.00 0.00 3.72
2663 5874 5.649557 GCAATACATATTTCTGCCACACAA 58.350 37.500 0.00 0.00 0.00 3.33
2664 5875 6.098679 GCAATACATATTTCTGCCACACAAA 58.901 36.000 0.00 0.00 0.00 2.83
2665 5876 6.757947 GCAATACATATTTCTGCCACACAAAT 59.242 34.615 0.00 0.00 0.00 2.32
2666 5877 7.920151 GCAATACATATTTCTGCCACACAAATA 59.080 33.333 0.00 0.00 0.00 1.40
2667 5878 9.970395 CAATACATATTTCTGCCACACAAATAT 57.030 29.630 0.00 0.00 34.44 1.28
2669 5880 9.970395 ATACATATTTCTGCCACACAAATATTG 57.030 29.630 0.00 0.00 32.67 1.90
2670 5881 7.267128 ACATATTTCTGCCACACAAATATTGG 58.733 34.615 0.00 0.00 32.67 3.16
2671 5882 5.743636 ATTTCTGCCACACAAATATTGGT 57.256 34.783 0.00 0.00 32.50 3.67
2672 5883 4.782019 TTCTGCCACACAAATATTGGTC 57.218 40.909 0.00 0.00 32.50 4.02
2673 5884 3.760738 TCTGCCACACAAATATTGGTCA 58.239 40.909 0.00 0.00 32.50 4.02
2674 5885 3.505680 TCTGCCACACAAATATTGGTCAC 59.494 43.478 0.00 0.00 32.50 3.67
2675 5886 3.225940 TGCCACACAAATATTGGTCACA 58.774 40.909 0.00 0.00 32.50 3.58
2676 5887 3.255395 TGCCACACAAATATTGGTCACAG 59.745 43.478 0.00 0.00 32.50 3.66
2677 5888 3.505680 GCCACACAAATATTGGTCACAGA 59.494 43.478 0.00 0.00 32.50 3.41
2678 5889 4.022416 GCCACACAAATATTGGTCACAGAA 60.022 41.667 0.00 0.00 32.50 3.02
2679 5890 5.508825 GCCACACAAATATTGGTCACAGAAA 60.509 40.000 0.00 0.00 32.50 2.52
2680 5891 5.920273 CCACACAAATATTGGTCACAGAAAC 59.080 40.000 0.00 0.00 34.12 2.78
2681 5892 6.239008 CCACACAAATATTGGTCACAGAAACT 60.239 38.462 0.00 0.00 34.12 2.66
2682 5893 6.857964 CACACAAATATTGGTCACAGAAACTC 59.142 38.462 0.00 0.00 34.12 3.01
2683 5894 6.016276 ACACAAATATTGGTCACAGAAACTCC 60.016 38.462 0.00 0.00 34.12 3.85
2684 5895 6.207417 CACAAATATTGGTCACAGAAACTCCT 59.793 38.462 0.00 0.00 34.12 3.69
2685 5896 6.777580 ACAAATATTGGTCACAGAAACTCCTT 59.222 34.615 0.00 0.00 34.12 3.36
2686 5897 7.287696 ACAAATATTGGTCACAGAAACTCCTTT 59.712 33.333 0.00 0.00 34.12 3.11
2687 5898 7.839680 AATATTGGTCACAGAAACTCCTTTT 57.160 32.000 0.00 0.00 0.00 2.27
2688 5899 5.774498 ATTGGTCACAGAAACTCCTTTTC 57.226 39.130 0.00 0.00 43.67 2.29
2718 5929 8.687824 AAAAATATTGGTGACACGAATCATTC 57.312 30.769 17.78 0.00 42.67 2.67
2754 5965 9.301897 AGGTAATGTCTGAAAGCTTTCTTAAAT 57.698 29.630 33.03 20.83 38.02 1.40
2795 6006 8.635765 TTATTAATATTCACCATGGCCTTCTC 57.364 34.615 13.04 0.00 0.00 2.87
2840 6051 8.043710 AGTCCTTCTAGACAGGTATTGAAATTG 58.956 37.037 16.04 0.00 39.34 2.32
2841 6052 7.824779 GTCCTTCTAGACAGGTATTGAAATTGT 59.175 37.037 16.04 0.00 36.73 2.71
2843 6054 9.667107 CCTTCTAGACAGGTATTGAAATTGTTA 57.333 33.333 10.97 0.00 0.00 2.41
2857 6068 8.417780 TTGAAATTGTTACATTTGTGAACCTG 57.582 30.769 0.00 0.00 0.00 4.00
2864 6076 6.770303 TGTTACATTTGTGAACCTGATCTGAA 59.230 34.615 0.38 0.00 0.00 3.02
2865 6077 5.695851 ACATTTGTGAACCTGATCTGAAC 57.304 39.130 0.38 0.00 0.00 3.18
2871 6083 5.684704 TGTGAACCTGATCTGAACTTTCTT 58.315 37.500 0.38 0.00 0.00 2.52
2966 6178 4.380550 GCAACTAGCCATTTTGTTACTCCC 60.381 45.833 0.00 0.00 37.23 4.30
2987 6199 2.378038 GAACTTGATGCTGGGCCAATA 58.622 47.619 8.04 0.00 0.00 1.90
3003 6215 4.022849 GGCCAATAATTGAGCAGATGGTAC 60.023 45.833 0.00 0.00 0.00 3.34
3039 6251 6.632834 CGCATAATATTGAACTTAAGTGCCAC 59.367 38.462 9.34 2.51 0.00 5.01
3046 6258 3.625764 TGAACTTAAGTGCCACAACTGTC 59.374 43.478 9.34 0.00 0.00 3.51
3069 6281 8.035394 TGTCTATCTGTCATTTACAAACTCCTC 58.965 37.037 0.00 0.00 37.74 3.71
3073 6285 4.651778 TGTCATTTACAAACTCCTCCTGG 58.348 43.478 0.00 0.00 34.29 4.45
3074 6286 4.104102 TGTCATTTACAAACTCCTCCTGGT 59.896 41.667 0.00 0.00 34.29 4.00
3099 10424 9.220767 GTCTCAGTTTTTATGATAGTTTGGACT 57.779 33.333 0.00 0.00 39.97 3.85
3112 10437 9.246670 TGATAGTTTGGACTTGAATCAAATCAT 57.753 29.630 6.77 0.00 37.33 2.45
3117 10442 7.528996 TTGGACTTGAATCAAATCATCAGTT 57.471 32.000 6.77 0.00 0.00 3.16
3118 10443 6.916440 TGGACTTGAATCAAATCATCAGTTG 58.084 36.000 6.77 0.00 0.00 3.16
3119 10444 6.071784 TGGACTTGAATCAAATCATCAGTTGG 60.072 38.462 6.77 0.00 0.00 3.77
3120 10445 6.276832 ACTTGAATCAAATCATCAGTTGGG 57.723 37.500 0.00 0.00 0.00 4.12
3121 10446 5.776716 ACTTGAATCAAATCATCAGTTGGGT 59.223 36.000 0.00 0.00 0.00 4.51
3122 10447 5.648178 TGAATCAAATCATCAGTTGGGTG 57.352 39.130 0.00 0.00 0.00 4.61
3123 10448 5.078949 TGAATCAAATCATCAGTTGGGTGT 58.921 37.500 0.00 0.00 0.00 4.16
3124 10449 5.539574 TGAATCAAATCATCAGTTGGGTGTT 59.460 36.000 0.00 0.00 0.00 3.32
3125 10450 6.718912 TGAATCAAATCATCAGTTGGGTGTTA 59.281 34.615 0.00 0.00 0.00 2.41
3135 10460 5.596845 TCAGTTGGGTGTTAAATTGCTTTC 58.403 37.500 0.00 0.00 0.00 2.62
3151 10477 2.803133 GCTTTCTTTTCACCACTTGGGC 60.803 50.000 0.00 0.00 42.05 5.36
3154 10480 3.140325 TCTTTTCACCACTTGGGCTAG 57.860 47.619 0.00 0.00 42.05 3.42
3155 10481 2.441750 TCTTTTCACCACTTGGGCTAGT 59.558 45.455 0.00 0.00 42.05 2.57
3163 10489 3.707102 ACCACTTGGGCTAGTATCTCTTC 59.293 47.826 0.00 0.00 42.05 2.87
3167 10493 3.689872 TGGGCTAGTATCTCTTCAGGT 57.310 47.619 0.00 0.00 0.00 4.00
3175 10513 1.196012 ATCTCTTCAGGTCGTTCCCC 58.804 55.000 0.00 0.00 36.75 4.81
3196 10534 3.131046 CCTTGTGGGATTTGTTAGCATCC 59.869 47.826 0.00 0.00 38.68 3.51
3198 10536 3.088532 TGTGGGATTTGTTAGCATCCAC 58.911 45.455 11.88 11.88 40.90 4.02
3199 10537 2.427095 GTGGGATTTGTTAGCATCCACC 59.573 50.000 2.16 0.00 40.90 4.61
3201 10539 2.689983 GGGATTTGTTAGCATCCACCTG 59.310 50.000 2.16 0.00 40.90 4.00
3203 10541 3.129287 GGATTTGTTAGCATCCACCTGTG 59.871 47.826 0.00 0.00 39.16 3.66
3225 10563 5.577945 GTGTCCAAAATAATGTCATGCTTGG 59.422 40.000 0.00 8.28 34.44 3.61
3226 10564 5.245751 TGTCCAAAATAATGTCATGCTTGGT 59.754 36.000 12.01 0.00 34.69 3.67
3240 10578 4.829064 TGCTTGGTCACTTTCACATTAC 57.171 40.909 0.00 0.00 0.00 1.89
3252 10590 1.879380 TCACATTACAACTGCTGTGGC 59.121 47.619 0.00 0.00 39.20 5.01
3316 10654 7.170658 GTGCTGAAGTTTTATTAAACCAATGCA 59.829 33.333 3.79 7.41 43.77 3.96
3533 10871 4.764823 TGAAGACTGTTGTGTTTTGAACCT 59.235 37.500 0.00 0.00 29.33 3.50
3709 11157 1.761784 TGCCCAAAACATGCTTTGACT 59.238 42.857 20.52 0.00 38.35 3.41
3710 11158 2.137523 GCCCAAAACATGCTTTGACTG 58.862 47.619 20.52 10.85 38.35 3.51
3712 11160 3.383761 CCCAAAACATGCTTTGACTGTC 58.616 45.455 20.52 0.00 38.35 3.51
3713 11161 3.383761 CCAAAACATGCTTTGACTGTCC 58.616 45.455 20.52 0.00 38.35 4.02
3715 11163 3.996150 AAACATGCTTTGACTGTCCTG 57.004 42.857 5.17 0.00 0.00 3.86
3716 11164 1.242076 ACATGCTTTGACTGTCCTGC 58.758 50.000 5.17 7.47 0.00 4.85
3788 11295 0.905357 CTAGCCTGTGCCCTACTTGT 59.095 55.000 0.00 0.00 38.69 3.16
3800 11307 3.448686 CCCTACTTGTTCAGCTACATCG 58.551 50.000 0.00 0.00 0.00 3.84
3989 11498 7.307337 CCGTAAACGACACCTGTAAGTATTTTT 60.307 37.037 3.65 0.00 43.02 1.94
3995 11504 7.227116 ACGACACCTGTAAGTATTTTTAAGCAA 59.773 33.333 0.00 0.00 0.00 3.91
4026 11535 4.650754 ATTCAGATTCAGGAAGCATTGC 57.349 40.909 0.00 0.00 36.28 3.56
4035 11544 0.458669 GGAAGCATTGCCATCAGGTG 59.541 55.000 4.70 0.00 37.19 4.00
4039 11548 2.094675 AGCATTGCCATCAGGTGTTAC 58.905 47.619 4.70 0.00 37.19 2.50
4042 11551 3.428045 GCATTGCCATCAGGTGTTACTTC 60.428 47.826 0.00 0.00 37.19 3.01
4051 11560 7.331026 CCATCAGGTGTTACTTCTTGAGATAA 58.669 38.462 0.00 0.00 0.00 1.75
4054 11563 9.965902 ATCAGGTGTTACTTCTTGAGATAAAAT 57.034 29.630 0.00 0.00 0.00 1.82
4055 11564 9.793259 TCAGGTGTTACTTCTTGAGATAAAATT 57.207 29.630 0.00 0.00 0.00 1.82
4128 11656 9.508155 GCTCTTCAGCTTCAGTATGACCTGTAT 62.508 44.444 0.00 0.00 39.98 2.29
4159 11687 8.765219 CCAGACTTACTGTTAATTGATATTCGG 58.235 37.037 0.00 0.00 44.40 4.30
4162 11690 9.916397 GACTTACTGTTAATTGATATTCGGTTG 57.084 33.333 0.00 0.00 0.00 3.77
4253 11805 5.549742 ACAAATGAAGCAATGGAGGAAAA 57.450 34.783 0.00 0.00 0.00 2.29
4255 11807 6.536447 ACAAATGAAGCAATGGAGGAAAATT 58.464 32.000 0.00 0.00 0.00 1.82
4289 11841 7.602644 TGTGACCTCTTGTTAATGTAGATTGAC 59.397 37.037 0.99 0.99 0.00 3.18
4321 11873 5.250543 TCTTGTGTAAATCCCCTGATTCAGA 59.749 40.000 15.36 0.00 40.34 3.27
4329 11881 6.940430 AATCCCCTGATTCAGAAACAAAAT 57.060 33.333 15.36 0.00 36.45 1.82
4330 11882 8.434589 AAATCCCCTGATTCAGAAACAAAATA 57.565 30.769 15.36 0.00 40.34 1.40
4333 11885 8.434589 TCCCCTGATTCAGAAACAAAATATTT 57.565 30.769 15.36 0.00 32.44 1.40
4334 11886 8.313292 TCCCCTGATTCAGAAACAAAATATTTG 58.687 33.333 15.36 1.47 32.44 2.32
4335 11887 8.313292 CCCCTGATTCAGAAACAAAATATTTGA 58.687 33.333 15.36 0.00 32.44 2.69
4479 12032 1.683385 TGCACCAGATATCAGGACTCG 59.317 52.381 20.19 7.10 0.00 4.18
4511 12064 3.117888 GGGCCTTCTCATAAGGAATGACA 60.118 47.826 0.84 0.00 39.77 3.58
4512 12065 4.133078 GGCCTTCTCATAAGGAATGACAG 58.867 47.826 7.97 0.00 39.77 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.027837 GCCTTACGTAGACCCTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
1 2 1.551883 GCCTTACGTAGACCCTTCCAA 59.448 52.381 0.00 0.00 0.00 3.53
2 3 1.188863 GCCTTACGTAGACCCTTCCA 58.811 55.000 0.00 0.00 0.00 3.53
3 4 1.482954 AGCCTTACGTAGACCCTTCC 58.517 55.000 0.00 0.00 0.00 3.46
4 5 3.445096 TGTAAGCCTTACGTAGACCCTTC 59.555 47.826 9.90 0.00 38.98 3.46
5 6 3.194329 GTGTAAGCCTTACGTAGACCCTT 59.806 47.826 9.90 0.82 38.98 3.95
6 7 2.757314 GTGTAAGCCTTACGTAGACCCT 59.243 50.000 9.90 0.00 38.98 4.34
7 8 2.159184 GGTGTAAGCCTTACGTAGACCC 60.159 54.545 9.90 0.17 39.71 4.46
8 9 3.156511 GGTGTAAGCCTTACGTAGACC 57.843 52.381 9.90 7.89 38.99 3.85
17 18 9.194101 GAAATCATTCATGTGGGTGTAAGCCTT 62.194 40.741 0.00 0.00 44.63 4.35
18 19 7.804740 GAAATCATTCATGTGGGTGTAAGCCT 61.805 42.308 0.00 0.00 44.63 4.58
19 20 5.679638 GAAATCATTCATGTGGGTGTAAGCC 60.680 44.000 0.00 0.00 44.61 4.35
20 21 4.989279 AATCATTCATGTGGGTGTAAGC 57.011 40.909 0.00 0.00 0.00 3.09
21 22 6.558009 CAGAAATCATTCATGTGGGTGTAAG 58.442 40.000 0.00 0.00 38.06 2.34
22 23 5.105797 GCAGAAATCATTCATGTGGGTGTAA 60.106 40.000 0.00 0.00 38.06 2.41
23 24 4.398988 GCAGAAATCATTCATGTGGGTGTA 59.601 41.667 0.00 0.00 38.06 2.90
24 25 3.194116 GCAGAAATCATTCATGTGGGTGT 59.806 43.478 0.00 0.00 38.06 4.16
25 26 3.446161 AGCAGAAATCATTCATGTGGGTG 59.554 43.478 0.00 0.00 38.06 4.61
26 27 3.705051 AGCAGAAATCATTCATGTGGGT 58.295 40.909 0.00 0.00 38.06 4.51
27 28 5.769367 CATAGCAGAAATCATTCATGTGGG 58.231 41.667 0.00 0.00 38.06 4.61
28 29 5.220381 GCATAGCAGAAATCATTCATGTGG 58.780 41.667 0.00 0.00 38.06 4.17
29 30 5.220381 GGCATAGCAGAAATCATTCATGTG 58.780 41.667 0.00 0.00 38.06 3.21
30 31 4.891168 TGGCATAGCAGAAATCATTCATGT 59.109 37.500 0.00 0.00 38.06 3.21
31 32 5.447624 TGGCATAGCAGAAATCATTCATG 57.552 39.130 0.00 0.00 38.06 3.07
32 33 6.474140 TTTGGCATAGCAGAAATCATTCAT 57.526 33.333 0.00 0.00 38.06 2.57
33 34 5.918426 TTTGGCATAGCAGAAATCATTCA 57.082 34.783 0.00 0.00 38.06 2.57
34 35 7.037438 TCTTTTTGGCATAGCAGAAATCATTC 58.963 34.615 0.00 0.00 35.70 2.67
35 36 6.938507 TCTTTTTGGCATAGCAGAAATCATT 58.061 32.000 0.00 0.00 0.00 2.57
36 37 6.534475 TCTTTTTGGCATAGCAGAAATCAT 57.466 33.333 0.00 0.00 0.00 2.45
37 38 5.981088 TCTTTTTGGCATAGCAGAAATCA 57.019 34.783 0.00 0.00 0.00 2.57
38 39 5.751990 CCATCTTTTTGGCATAGCAGAAATC 59.248 40.000 0.00 0.00 0.00 2.17
39 40 5.395990 CCCATCTTTTTGGCATAGCAGAAAT 60.396 40.000 0.00 0.00 35.29 2.17
40 41 4.081531 CCCATCTTTTTGGCATAGCAGAAA 60.082 41.667 0.00 0.00 35.29 2.52
41 42 3.448301 CCCATCTTTTTGGCATAGCAGAA 59.552 43.478 0.00 0.00 35.29 3.02
42 43 3.025978 CCCATCTTTTTGGCATAGCAGA 58.974 45.455 0.00 0.00 35.29 4.26
43 44 2.101917 CCCCATCTTTTTGGCATAGCAG 59.898 50.000 0.00 0.00 35.29 4.24
44 45 2.109774 CCCCATCTTTTTGGCATAGCA 58.890 47.619 0.00 0.00 35.29 3.49
45 46 1.413812 CCCCCATCTTTTTGGCATAGC 59.586 52.381 0.00 0.00 35.29 2.97
77 78 4.410400 CTCTTGCCCACCCGTCCC 62.410 72.222 0.00 0.00 0.00 4.46
78 79 2.198304 AATCTCTTGCCCACCCGTCC 62.198 60.000 0.00 0.00 0.00 4.79
79 80 0.539986 TAATCTCTTGCCCACCCGTC 59.460 55.000 0.00 0.00 0.00 4.79
80 81 0.252197 GTAATCTCTTGCCCACCCGT 59.748 55.000 0.00 0.00 0.00 5.28
81 82 0.251916 TGTAATCTCTTGCCCACCCG 59.748 55.000 0.00 0.00 0.00 5.28
82 83 1.408822 CCTGTAATCTCTTGCCCACCC 60.409 57.143 0.00 0.00 0.00 4.61
83 84 1.408822 CCCTGTAATCTCTTGCCCACC 60.409 57.143 0.00 0.00 0.00 4.61
84 85 1.408822 CCCCTGTAATCTCTTGCCCAC 60.409 57.143 0.00 0.00 0.00 4.61
85 86 0.918983 CCCCTGTAATCTCTTGCCCA 59.081 55.000 0.00 0.00 0.00 5.36
86 87 0.183731 CCCCCTGTAATCTCTTGCCC 59.816 60.000 0.00 0.00 0.00 5.36
87 88 0.466372 GCCCCCTGTAATCTCTTGCC 60.466 60.000 0.00 0.00 0.00 4.52
88 89 0.255890 TGCCCCCTGTAATCTCTTGC 59.744 55.000 0.00 0.00 0.00 4.01
89 90 1.743772 CGTGCCCCCTGTAATCTCTTG 60.744 57.143 0.00 0.00 0.00 3.02
90 91 0.541863 CGTGCCCCCTGTAATCTCTT 59.458 55.000 0.00 0.00 0.00 2.85
91 92 0.617820 ACGTGCCCCCTGTAATCTCT 60.618 55.000 0.00 0.00 0.00 3.10
92 93 0.179081 GACGTGCCCCCTGTAATCTC 60.179 60.000 0.00 0.00 0.00 2.75
93 94 0.907704 TGACGTGCCCCCTGTAATCT 60.908 55.000 0.00 0.00 0.00 2.40
94 95 0.462047 CTGACGTGCCCCCTGTAATC 60.462 60.000 0.00 0.00 0.00 1.75
95 96 0.907704 TCTGACGTGCCCCCTGTAAT 60.908 55.000 0.00 0.00 0.00 1.89
96 97 1.534476 TCTGACGTGCCCCCTGTAA 60.534 57.895 0.00 0.00 0.00 2.41
97 98 1.982395 CTCTGACGTGCCCCCTGTA 60.982 63.158 0.00 0.00 0.00 2.74
98 99 3.314331 CTCTGACGTGCCCCCTGT 61.314 66.667 0.00 0.00 0.00 4.00
99 100 4.767255 GCTCTGACGTGCCCCCTG 62.767 72.222 0.00 0.00 0.00 4.45
104 105 3.782244 CTTGCGCTCTGACGTGCC 61.782 66.667 9.73 0.00 39.58 5.01
105 106 3.782244 CCTTGCGCTCTGACGTGC 61.782 66.667 9.73 0.00 40.67 5.34
132 133 0.752054 TTTTCTGTGGGCAAGGCTTG 59.248 50.000 22.75 22.75 0.00 4.01
160 161 2.169832 TGTTTCTCCCGCTTTCTCTG 57.830 50.000 0.00 0.00 0.00 3.35
169 170 1.794222 GGCGTCATTGTTTCTCCCG 59.206 57.895 0.00 0.00 0.00 5.14
193 194 5.455849 GCTTCCTCTTTGTTTTCGTTCTTTC 59.544 40.000 0.00 0.00 0.00 2.62
206 207 1.730501 TGCATCGAGCTTCCTCTTTG 58.269 50.000 8.07 0.00 45.94 2.77
219 220 2.609427 TCAGAGATTCCCTTGCATCG 57.391 50.000 0.00 0.00 0.00 3.84
227 228 3.777522 TCTCTTTCCCTTCAGAGATTCCC 59.222 47.826 0.00 0.00 40.56 3.97
250 251 8.366401 TCCATTCTTTGAAATAAATTGCAGTGA 58.634 29.630 0.00 0.00 0.00 3.41
267 268 6.017109 CGATTTACCGGATGATTCCATTCTTT 60.017 38.462 9.46 0.00 42.74 2.52
284 285 7.148355 TGGTAAAAACCATCTTCGATTTACC 57.852 36.000 19.24 19.24 46.29 2.85
287 288 8.343168 TGTATGGTAAAAACCATCTTCGATTT 57.657 30.769 13.12 0.00 46.85 2.17
292 293 7.981142 TCGAATGTATGGTAAAAACCATCTTC 58.019 34.615 13.12 12.86 46.85 2.87
303 305 6.239396 TCAAAGGGTTTCGAATGTATGGTAA 58.761 36.000 0.00 0.00 0.00 2.85
304 306 5.806818 TCAAAGGGTTTCGAATGTATGGTA 58.193 37.500 0.00 0.00 0.00 3.25
315 317 3.923017 AATGAGCTTCAAAGGGTTTCG 57.077 42.857 0.00 0.00 0.00 3.46
352 354 6.824196 GGAGATTTCTTTACCAAGGGTTCTAG 59.176 42.308 0.00 0.00 37.09 2.43
416 436 6.255887 GGATAGAATAACCACTCTTTGTCACG 59.744 42.308 0.00 0.00 33.04 4.35
417 437 6.539103 GGGATAGAATAACCACTCTTTGTCAC 59.461 42.308 0.00 0.00 34.77 3.67
450 475 1.374125 CAACCACGAGCGATGGACA 60.374 57.895 15.02 0.00 39.87 4.02
452 477 0.250124 AAACAACCACGAGCGATGGA 60.250 50.000 15.02 0.00 39.87 3.41
460 485 4.556501 GCATGAATCTCAAAACAACCACGA 60.557 41.667 0.00 0.00 0.00 4.35
491 516 7.504924 AGACGAAATTTAACAACAATCAGGA 57.495 32.000 0.00 0.00 0.00 3.86
512 537 4.191662 ACGAAACATTGTGAAACGAGAC 57.808 40.909 0.00 0.00 42.39 3.36
544 573 3.430556 ACACGTTCAAACAAGCAAAAACC 59.569 39.130 0.00 0.00 0.00 3.27
545 574 4.639189 ACACGTTCAAACAAGCAAAAAC 57.361 36.364 0.00 0.00 0.00 2.43
559 588 5.545658 ATGAAACATGGTGATACACGTTC 57.454 39.130 0.00 0.00 34.83 3.95
598 628 3.071602 AGCTCCAAAGAAAGTGCACTCTA 59.928 43.478 21.95 0.00 0.00 2.43
600 630 2.031333 CAGCTCCAAAGAAAGTGCACTC 60.031 50.000 21.95 9.10 0.00 3.51
640 672 7.972277 AGAATGTATCTTGATGTTCATTTGTGC 59.028 33.333 0.00 0.00 33.39 4.57
642 674 9.234827 TCAGAATGTATCTTGATGTTCATTTGT 57.765 29.630 0.00 0.00 35.73 2.83
672 718 1.029681 GCACCGGGTGTTTTCTTCTT 58.970 50.000 26.86 0.00 35.75 2.52
688 734 3.760684 ACCAGATCCTTCTCATTTTGCAC 59.239 43.478 0.00 0.00 0.00 4.57
695 741 2.959707 GACGGTACCAGATCCTTCTCAT 59.040 50.000 13.54 0.00 0.00 2.90
696 742 2.025226 AGACGGTACCAGATCCTTCTCA 60.025 50.000 13.54 0.00 28.30 3.27
697 743 2.657143 AGACGGTACCAGATCCTTCTC 58.343 52.381 13.54 0.00 28.30 2.87
698 744 2.830651 AGACGGTACCAGATCCTTCT 57.169 50.000 13.54 0.98 0.00 2.85
699 745 4.142790 TCATAGACGGTACCAGATCCTTC 58.857 47.826 13.54 0.00 0.00 3.46
702 748 3.253677 CACTCATAGACGGTACCAGATCC 59.746 52.174 13.54 0.00 0.00 3.36
703 749 3.304794 GCACTCATAGACGGTACCAGATC 60.305 52.174 13.54 6.21 0.00 2.75
708 754 3.119245 TCAAAGCACTCATAGACGGTACC 60.119 47.826 0.16 0.16 0.00 3.34
723 769 3.435105 AAAAACACGCATCTCAAAGCA 57.565 38.095 0.00 0.00 0.00 3.91
744 790 8.476142 CGAATTCGAAAAGCACTGAATTAAAAA 58.524 29.630 23.29 0.00 40.18 1.94
745 791 7.646130 ACGAATTCGAAAAGCACTGAATTAAAA 59.354 29.630 33.05 0.00 40.18 1.52
746 792 7.136119 ACGAATTCGAAAAGCACTGAATTAAA 58.864 30.769 33.05 0.00 40.18 1.52
749 795 5.108385 ACGAATTCGAAAAGCACTGAATT 57.892 34.783 33.05 3.39 42.12 2.17
755 801 3.810373 ACATGACGAATTCGAAAAGCAC 58.190 40.909 33.05 14.48 43.02 4.40
764 810 5.693814 AGAGCTTTGAAACATGACGAATTC 58.306 37.500 0.00 0.00 0.00 2.17
786 832 8.624776 AGTCTCAAGAAAGGAAAAACAATGTAG 58.375 33.333 0.00 0.00 0.00 2.74
787 833 8.519799 AGTCTCAAGAAAGGAAAAACAATGTA 57.480 30.769 0.00 0.00 0.00 2.29
899 3779 6.128553 TGAGATTCGTGTTGTTCTCTTATTGC 60.129 38.462 0.00 0.00 36.43 3.56
900 3780 7.351414 TGAGATTCGTGTTGTTCTCTTATTG 57.649 36.000 0.00 0.00 36.43 1.90
902 3782 7.360438 GCTTTGAGATTCGTGTTGTTCTCTTAT 60.360 37.037 0.00 0.00 36.43 1.73
903 3783 6.073765 GCTTTGAGATTCGTGTTGTTCTCTTA 60.074 38.462 0.00 0.00 36.43 2.10
904 3784 5.277538 GCTTTGAGATTCGTGTTGTTCTCTT 60.278 40.000 0.00 0.00 36.43 2.85
905 3785 4.212214 GCTTTGAGATTCGTGTTGTTCTCT 59.788 41.667 0.00 0.00 36.43 3.10
906 3786 4.024893 TGCTTTGAGATTCGTGTTGTTCTC 60.025 41.667 0.00 0.00 36.09 2.87
930 3810 2.753009 ATCGCACCACAGCACCATGT 62.753 55.000 0.00 0.00 0.00 3.21
931 3811 1.985447 GATCGCACCACAGCACCATG 61.985 60.000 0.00 0.00 0.00 3.66
932 3812 1.746615 GATCGCACCACAGCACCAT 60.747 57.895 0.00 0.00 0.00 3.55
933 3813 2.358615 GATCGCACCACAGCACCA 60.359 61.111 0.00 0.00 0.00 4.17
934 3814 3.127533 GGATCGCACCACAGCACC 61.128 66.667 0.00 0.00 0.00 5.01
972 3909 1.137086 CTGGTTGGTGGAGTAGATCGG 59.863 57.143 0.00 0.00 0.00 4.18
975 3912 1.656587 TGCTGGTTGGTGGAGTAGAT 58.343 50.000 0.00 0.00 0.00 1.98
976 3913 1.071699 GTTGCTGGTTGGTGGAGTAGA 59.928 52.381 0.00 0.00 0.00 2.59
977 3914 1.523758 GTTGCTGGTTGGTGGAGTAG 58.476 55.000 0.00 0.00 0.00 2.57
978 3915 0.250124 CGTTGCTGGTTGGTGGAGTA 60.250 55.000 0.00 0.00 0.00 2.59
990 3927 0.878523 TCTGGGTTCGTTCGTTGCTG 60.879 55.000 0.00 0.00 0.00 4.41
991 3928 0.034896 ATCTGGGTTCGTTCGTTGCT 59.965 50.000 0.00 0.00 0.00 3.91
992 3929 0.872388 AATCTGGGTTCGTTCGTTGC 59.128 50.000 0.00 0.00 0.00 4.17
997 3934 4.444720 CGCTATTCTAATCTGGGTTCGTTC 59.555 45.833 0.00 0.00 0.00 3.95
1003 3944 1.000955 CGCCGCTATTCTAATCTGGGT 59.999 52.381 0.00 0.00 0.00 4.51
1006 3947 1.071605 GGCGCCGCTATTCTAATCTG 58.928 55.000 12.58 0.00 0.00 2.90
1007 3948 0.388649 CGGCGCCGCTATTCTAATCT 60.389 55.000 38.48 0.00 0.00 2.40
1048 3990 4.887190 GTTGGTGGCGGTGGTGGT 62.887 66.667 0.00 0.00 0.00 4.16
1073 4019 3.771110 GAGGGAGAGCATGGCTGGC 62.771 68.421 0.00 0.00 39.88 4.85
1074 4020 2.509916 GAGGGAGAGCATGGCTGG 59.490 66.667 0.00 0.00 39.88 4.85
1075 4021 2.108566 CGAGGGAGAGCATGGCTG 59.891 66.667 0.00 0.00 39.88 4.85
1076 4022 3.859414 GCGAGGGAGAGCATGGCT 61.859 66.667 0.00 0.00 43.88 4.75
1178 4131 3.511934 CGAGAGGAAGAAGAGAGGGAAAA 59.488 47.826 0.00 0.00 0.00 2.29
1180 4133 2.729194 CGAGAGGAAGAAGAGAGGGAA 58.271 52.381 0.00 0.00 0.00 3.97
1226 4200 2.360350 CGTCCTGGCCAACAGCAT 60.360 61.111 7.01 0.00 46.14 3.79
1380 4364 4.794648 TGGGAAATGGAGGCGGCG 62.795 66.667 0.51 0.51 0.00 6.46
1446 4431 2.410638 TTCGTCGAACAGGTGTCGGG 62.411 60.000 2.90 0.00 0.00 5.14
1470 4455 3.408229 CCACTGAGGGGCTGATGT 58.592 61.111 0.00 0.00 0.00 3.06
1478 4463 3.287867 AATCTGTAATGCCACTGAGGG 57.712 47.619 0.00 0.00 38.09 4.30
1479 4464 4.214971 GCATAATCTGTAATGCCACTGAGG 59.785 45.833 0.00 0.00 42.13 3.86
1480 4465 4.818005 TGCATAATCTGTAATGCCACTGAG 59.182 41.667 4.96 0.00 46.34 3.35
1481 4466 4.779696 TGCATAATCTGTAATGCCACTGA 58.220 39.130 4.96 0.00 46.34 3.41
1482 4467 4.577693 ACTGCATAATCTGTAATGCCACTG 59.422 41.667 4.96 0.00 46.34 3.66
1483 4468 4.785301 ACTGCATAATCTGTAATGCCACT 58.215 39.130 4.96 0.00 46.34 4.00
1484 4469 5.333339 CGTACTGCATAATCTGTAATGCCAC 60.333 44.000 4.96 0.77 46.34 5.01
1486 4471 4.750098 ACGTACTGCATAATCTGTAATGCC 59.250 41.667 4.96 0.00 46.34 4.40
1488 4473 9.114965 GTACTACGTACTGCATAATCTGTAATG 57.885 37.037 0.00 0.00 36.25 1.90
1489 4474 9.064706 AGTACTACGTACTGCATAATCTGTAAT 57.935 33.333 5.92 0.00 46.06 1.89
1490 4475 8.442632 AGTACTACGTACTGCATAATCTGTAA 57.557 34.615 5.92 0.00 46.06 2.41
1492 4477 6.939132 AGTACTACGTACTGCATAATCTGT 57.061 37.500 5.92 0.00 46.06 3.41
1504 4489 3.807071 GCTAGGGTGAGAGTACTACGTAC 59.193 52.174 0.00 0.00 39.10 3.67
1505 4490 3.181461 GGCTAGGGTGAGAGTACTACGTA 60.181 52.174 0.00 0.00 0.00 3.57
1506 4491 2.421248 GGCTAGGGTGAGAGTACTACGT 60.421 54.545 0.00 0.00 0.00 3.57
1507 4492 2.158784 AGGCTAGGGTGAGAGTACTACG 60.159 54.545 0.00 0.00 0.00 3.51
1508 4493 3.581265 AGGCTAGGGTGAGAGTACTAC 57.419 52.381 0.00 0.00 0.00 2.73
1509 4494 3.787013 AGAAGGCTAGGGTGAGAGTACTA 59.213 47.826 0.00 0.00 0.00 1.82
1510 4495 2.583566 AGAAGGCTAGGGTGAGAGTACT 59.416 50.000 0.00 0.00 0.00 2.73
1511 4496 2.953648 GAGAAGGCTAGGGTGAGAGTAC 59.046 54.545 0.00 0.00 0.00 2.73
1512 4497 2.581246 TGAGAAGGCTAGGGTGAGAGTA 59.419 50.000 0.00 0.00 0.00 2.59
1513 4498 1.359474 TGAGAAGGCTAGGGTGAGAGT 59.641 52.381 0.00 0.00 0.00 3.24
1514 4499 2.151502 TGAGAAGGCTAGGGTGAGAG 57.848 55.000 0.00 0.00 0.00 3.20
1515 4500 2.392662 CATGAGAAGGCTAGGGTGAGA 58.607 52.381 0.00 0.00 0.00 3.27
1526 4511 2.249535 CGCCATCGCCATGAGAAGG 61.250 63.158 0.00 0.97 30.57 3.46
1528 4513 2.203056 CCGCCATCGCCATGAGAA 60.203 61.111 0.00 0.00 30.57 2.87
1543 4528 3.131478 GTGATTTCACCCGGGCCG 61.131 66.667 24.08 21.46 40.85 6.13
1578 4600 3.356529 ACAGGAGATTGTGATGGGAAC 57.643 47.619 0.00 0.00 0.00 3.62
1581 4603 3.276857 CTGAACAGGAGATTGTGATGGG 58.723 50.000 0.00 0.00 0.00 4.00
1585 4619 3.554960 CGGAACTGAACAGGAGATTGTGA 60.555 47.826 6.76 0.00 0.00 3.58
1595 4629 0.242825 TACGGCTCGGAACTGAACAG 59.757 55.000 0.00 0.00 0.00 3.16
1596 4630 0.038892 GTACGGCTCGGAACTGAACA 60.039 55.000 0.00 0.00 0.00 3.18
1597 4631 0.243095 AGTACGGCTCGGAACTGAAC 59.757 55.000 0.00 0.00 0.00 3.18
1598 4632 0.524862 GAGTACGGCTCGGAACTGAA 59.475 55.000 8.71 0.00 34.13 3.02
1599 4633 2.177950 GAGTACGGCTCGGAACTGA 58.822 57.895 8.71 0.00 34.13 3.41
1600 4634 4.787999 GAGTACGGCTCGGAACTG 57.212 61.111 8.71 0.00 34.13 3.16
1607 4641 1.335142 CGCAGGAATAGAGTACGGCTC 60.335 57.143 1.61 1.61 44.45 4.70
1608 4642 0.669077 CGCAGGAATAGAGTACGGCT 59.331 55.000 0.00 0.00 0.00 5.52
1609 4643 0.384669 ACGCAGGAATAGAGTACGGC 59.615 55.000 0.00 0.00 0.00 5.68
1611 4645 4.548991 ACTAACGCAGGAATAGAGTACG 57.451 45.455 0.00 0.00 0.00 3.67
1612 4646 8.562892 TGTATAACTAACGCAGGAATAGAGTAC 58.437 37.037 0.00 0.00 0.00 2.73
1613 4647 8.681486 TGTATAACTAACGCAGGAATAGAGTA 57.319 34.615 0.00 0.00 0.00 2.59
1614 4648 7.578310 TGTATAACTAACGCAGGAATAGAGT 57.422 36.000 0.00 0.00 0.00 3.24
1616 4650 9.903682 GTAATGTATAACTAACGCAGGAATAGA 57.096 33.333 0.00 0.00 0.00 1.98
1617 4651 9.687210 TGTAATGTATAACTAACGCAGGAATAG 57.313 33.333 0.00 0.00 0.00 1.73
1620 4654 8.774890 TTTGTAATGTATAACTAACGCAGGAA 57.225 30.769 0.00 0.00 0.00 3.36
1622 4656 9.997482 ATTTTTGTAATGTATAACTAACGCAGG 57.003 29.630 0.00 0.00 0.00 4.85
1637 4671 9.003112 CACTTCGCTGATCTTATTTTTGTAATG 57.997 33.333 0.00 0.00 0.00 1.90
1639 4673 8.094798 ACACTTCGCTGATCTTATTTTTGTAA 57.905 30.769 0.00 0.00 0.00 2.41
1640 4674 7.602644 AGACACTTCGCTGATCTTATTTTTGTA 59.397 33.333 0.00 0.00 0.00 2.41
1647 4681 5.587289 GAAGAGACACTTCGCTGATCTTAT 58.413 41.667 0.00 0.00 44.15 1.73
1648 4682 4.987832 GAAGAGACACTTCGCTGATCTTA 58.012 43.478 0.00 0.00 44.15 2.10
1650 4737 3.502191 GAAGAGACACTTCGCTGATCT 57.498 47.619 0.00 0.00 44.15 2.75
1661 4748 0.319900 TGCTCGCAAGGAAGAGACAC 60.320 55.000 0.00 0.00 36.65 3.67
1662 4749 0.392706 TTGCTCGCAAGGAAGAGACA 59.607 50.000 0.00 0.00 36.65 3.41
1675 4762 4.608948 ATTCCTAGGGATAACTTGCTCG 57.391 45.455 9.46 0.00 0.00 5.03
1679 4766 5.122396 GCGCATTATTCCTAGGGATAACTTG 59.878 44.000 22.68 18.53 0.00 3.16
1681 4768 4.532521 AGCGCATTATTCCTAGGGATAACT 59.467 41.667 22.68 13.30 0.00 2.24
1682 4769 4.833390 AGCGCATTATTCCTAGGGATAAC 58.167 43.478 22.68 11.52 0.00 1.89
1683 4770 5.248477 AGAAGCGCATTATTCCTAGGGATAA 59.752 40.000 22.50 22.50 0.00 1.75
1686 4773 2.972713 AGAAGCGCATTATTCCTAGGGA 59.027 45.455 11.47 0.00 0.00 4.20
1687 4774 3.007398 AGAGAAGCGCATTATTCCTAGGG 59.993 47.826 11.47 0.00 0.00 3.53
1688 4775 4.264460 AGAGAAGCGCATTATTCCTAGG 57.736 45.455 11.47 0.82 0.00 3.02
1689 4776 5.292765 TGAAGAGAAGCGCATTATTCCTAG 58.707 41.667 11.47 0.00 0.00 3.02
1690 4777 5.276461 TGAAGAGAAGCGCATTATTCCTA 57.724 39.130 11.47 0.00 0.00 2.94
1691 4778 4.125703 CTGAAGAGAAGCGCATTATTCCT 58.874 43.478 11.47 1.41 0.00 3.36
1692 4779 3.303659 GCTGAAGAGAAGCGCATTATTCC 60.304 47.826 11.47 0.00 0.00 3.01
1693 4780 3.559242 AGCTGAAGAGAAGCGCATTATTC 59.441 43.478 11.47 4.30 45.59 1.75
1694 4781 3.539604 AGCTGAAGAGAAGCGCATTATT 58.460 40.909 11.47 0.00 45.59 1.40
1695 4782 3.129871 GAGCTGAAGAGAAGCGCATTAT 58.870 45.455 11.47 0.00 45.59 1.28
1696 4783 2.094026 TGAGCTGAAGAGAAGCGCATTA 60.094 45.455 11.47 0.00 44.09 1.90
1697 4784 1.338484 TGAGCTGAAGAGAAGCGCATT 60.338 47.619 11.47 0.00 44.09 3.56
1698 4785 0.248565 TGAGCTGAAGAGAAGCGCAT 59.751 50.000 11.47 0.00 44.09 4.73
1699 4786 1.667722 TGAGCTGAAGAGAAGCGCA 59.332 52.632 11.47 0.00 46.27 6.09
1700 4787 0.651551 CATGAGCTGAAGAGAAGCGC 59.348 55.000 0.00 0.00 45.59 5.92
1706 4794 1.703438 GCGGCACATGAGCTGAAGAG 61.703 60.000 25.74 7.33 43.63 2.85
1716 4804 1.355796 CTGCAAATTGGCGGCACATG 61.356 55.000 12.92 12.29 36.28 3.21
1717 4805 1.079681 CTGCAAATTGGCGGCACAT 60.080 52.632 12.92 5.97 36.28 3.21
1719 4807 2.023223 CACTGCAAATTGGCGGCAC 61.023 57.895 12.92 0.00 44.09 5.01
1722 4810 0.314935 AACTCACTGCAAATTGGCGG 59.685 50.000 12.37 12.37 45.74 6.13
1795 4883 2.625737 CATTGAAGCAGTCCGACAGAT 58.374 47.619 0.40 0.00 0.00 2.90
1813 4901 0.806868 CACAGTGGATTTCTGCGCAT 59.193 50.000 12.24 0.00 36.50 4.73
1820 4908 0.094730 GTACGCGCACAGTGGATTTC 59.905 55.000 5.73 0.00 33.90 2.17
1922 5013 2.358957 TCCACAGAGAAATCATTGCCG 58.641 47.619 0.00 0.00 0.00 5.69
2015 5108 4.873259 GCAATGGTCCTAGAAGAAGAAGAC 59.127 45.833 0.00 0.00 0.00 3.01
2017 5110 5.096443 AGCAATGGTCCTAGAAGAAGAAG 57.904 43.478 0.00 0.00 0.00 2.85
2038 5131 4.754372 TCTATGCAGCAAGTCAAACAAG 57.246 40.909 0.00 0.00 0.00 3.16
2118 5211 9.076596 CAAAGCCCGAAGAAAGAATTATAAAAG 57.923 33.333 0.00 0.00 0.00 2.27
2119 5212 8.581578 ACAAAGCCCGAAGAAAGAATTATAAAA 58.418 29.630 0.00 0.00 0.00 1.52
2120 5213 8.117813 ACAAAGCCCGAAGAAAGAATTATAAA 57.882 30.769 0.00 0.00 0.00 1.40
2121 5214 7.696992 ACAAAGCCCGAAGAAAGAATTATAA 57.303 32.000 0.00 0.00 0.00 0.98
2122 5215 7.696992 AACAAAGCCCGAAGAAAGAATTATA 57.303 32.000 0.00 0.00 0.00 0.98
2123 5216 6.590234 AACAAAGCCCGAAGAAAGAATTAT 57.410 33.333 0.00 0.00 0.00 1.28
2125 5218 4.937201 AACAAAGCCCGAAGAAAGAATT 57.063 36.364 0.00 0.00 0.00 2.17
2126 5219 5.070685 AGTAACAAAGCCCGAAGAAAGAAT 58.929 37.500 0.00 0.00 0.00 2.40
2127 5220 4.457466 AGTAACAAAGCCCGAAGAAAGAA 58.543 39.130 0.00 0.00 0.00 2.52
2131 5224 5.344884 CAAAAAGTAACAAAGCCCGAAGAA 58.655 37.500 0.00 0.00 0.00 2.52
2132 5225 4.735283 GCAAAAAGTAACAAAGCCCGAAGA 60.735 41.667 0.00 0.00 0.00 2.87
2133 5226 3.489416 GCAAAAAGTAACAAAGCCCGAAG 59.511 43.478 0.00 0.00 0.00 3.79
2134 5227 3.131400 AGCAAAAAGTAACAAAGCCCGAA 59.869 39.130 0.00 0.00 0.00 4.30
2137 5230 4.188462 ACAAGCAAAAAGTAACAAAGCCC 58.812 39.130 0.00 0.00 0.00 5.19
2139 5232 5.804979 TCTGACAAGCAAAAAGTAACAAAGC 59.195 36.000 0.00 0.00 0.00 3.51
2140 5233 7.810766 TTCTGACAAGCAAAAAGTAACAAAG 57.189 32.000 0.00 0.00 0.00 2.77
2142 5235 9.462174 CATATTCTGACAAGCAAAAAGTAACAA 57.538 29.630 0.00 0.00 0.00 2.83
2143 5236 7.594758 GCATATTCTGACAAGCAAAAAGTAACA 59.405 33.333 0.00 0.00 0.00 2.41
2144 5237 7.809806 AGCATATTCTGACAAGCAAAAAGTAAC 59.190 33.333 0.00 0.00 0.00 2.50
2145 5238 7.809331 CAGCATATTCTGACAAGCAAAAAGTAA 59.191 33.333 0.00 0.00 36.19 2.24
2146 5239 7.040478 ACAGCATATTCTGACAAGCAAAAAGTA 60.040 33.333 9.48 0.00 37.51 2.24
2147 5240 6.154445 CAGCATATTCTGACAAGCAAAAAGT 58.846 36.000 0.00 0.00 36.19 2.66
2148 5241 6.154445 ACAGCATATTCTGACAAGCAAAAAG 58.846 36.000 9.48 0.00 37.51 2.27
2158 5251 4.125703 CTCCAGGAACAGCATATTCTGAC 58.874 47.826 9.48 3.13 37.51 3.51
2164 5257 6.656693 GCATATAAACTCCAGGAACAGCATAT 59.343 38.462 0.00 0.00 0.00 1.78
2165 5258 5.997746 GCATATAAACTCCAGGAACAGCATA 59.002 40.000 0.00 0.00 0.00 3.14
2166 5259 4.823989 GCATATAAACTCCAGGAACAGCAT 59.176 41.667 0.00 0.00 0.00 3.79
2167 5260 4.080356 AGCATATAAACTCCAGGAACAGCA 60.080 41.667 0.00 0.00 0.00 4.41
2169 5262 5.923204 AGAGCATATAAACTCCAGGAACAG 58.077 41.667 0.00 0.00 33.18 3.16
2170 5263 5.957771 AGAGCATATAAACTCCAGGAACA 57.042 39.130 0.00 0.00 33.18 3.18
2171 5264 6.599638 ACAAAGAGCATATAAACTCCAGGAAC 59.400 38.462 0.00 0.00 33.18 3.62
2175 5268 8.734386 AGAAAACAAAGAGCATATAAACTCCAG 58.266 33.333 2.59 0.00 33.18 3.86
2176 5269 8.635765 AGAAAACAAAGAGCATATAAACTCCA 57.364 30.769 2.59 0.00 33.18 3.86
2177 5270 9.346725 CAAGAAAACAAAGAGCATATAAACTCC 57.653 33.333 2.59 0.00 33.18 3.85
2178 5271 9.899226 ACAAGAAAACAAAGAGCATATAAACTC 57.101 29.630 0.00 0.00 0.00 3.01
2183 5276 8.450964 GCTGTACAAGAAAACAAAGAGCATATA 58.549 33.333 0.00 0.00 0.00 0.86
2195 5288 5.181690 TCATGGTTGCTGTACAAGAAAAC 57.818 39.130 0.00 0.00 39.50 2.43
2335 5428 2.129607 GCCAGCACAACAAAATCTGTG 58.870 47.619 0.00 0.00 44.70 3.66
2372 5465 3.125316 CAGAGACCGTGACAAAATAAGCC 59.875 47.826 0.00 0.00 0.00 4.35
2387 5480 6.273825 GGAAAAGAAAAGGAAAACAGAGACC 58.726 40.000 0.00 0.00 0.00 3.85
2390 5483 6.471233 AGGGAAAAGAAAAGGAAAACAGAG 57.529 37.500 0.00 0.00 0.00 3.35
2392 5485 7.107639 TGTAGGGAAAAGAAAAGGAAAACAG 57.892 36.000 0.00 0.00 0.00 3.16
2394 5487 7.042051 GCAATGTAGGGAAAAGAAAAGGAAAAC 60.042 37.037 0.00 0.00 0.00 2.43
2397 5490 5.600484 TGCAATGTAGGGAAAAGAAAAGGAA 59.400 36.000 0.00 0.00 0.00 3.36
2399 5492 5.467035 TGCAATGTAGGGAAAAGAAAAGG 57.533 39.130 0.00 0.00 0.00 3.11
2404 5497 4.671831 TCCATTGCAATGTAGGGAAAAGA 58.328 39.130 31.87 18.49 34.60 2.52
2405 5498 5.404466 TTCCATTGCAATGTAGGGAAAAG 57.596 39.130 31.87 16.75 34.60 2.27
2406 5499 5.541868 TCTTTCCATTGCAATGTAGGGAAAA 59.458 36.000 31.87 20.94 34.60 2.29
2408 5501 4.671831 TCTTTCCATTGCAATGTAGGGAA 58.328 39.130 31.87 25.52 34.60 3.97
2410 5503 5.404466 TTTCTTTCCATTGCAATGTAGGG 57.596 39.130 31.87 20.07 34.60 3.53
2424 5526 1.303091 TAGCGCGCCCTTTTCTTTCC 61.303 55.000 30.33 0.00 0.00 3.13
2438 5540 2.128035 ACAAATATGAGACGCTAGCGC 58.872 47.619 35.63 26.66 44.19 5.92
2439 5541 7.562640 TTTATACAAATATGAGACGCTAGCG 57.437 36.000 34.27 34.27 46.03 4.26
2445 5547 9.716507 CCAAACCTTTTATACAAATATGAGACG 57.283 33.333 0.00 0.00 0.00 4.18
2462 5646 5.402630 ACCCAAATATCAGTCCAAACCTTT 58.597 37.500 0.00 0.00 0.00 3.11
2466 5650 7.342026 AGGAAATACCCAAATATCAGTCCAAAC 59.658 37.037 0.00 0.00 40.05 2.93
2467 5651 7.418378 AGGAAATACCCAAATATCAGTCCAAA 58.582 34.615 0.00 0.00 40.05 3.28
2501 5685 6.966632 TGCGAACTTTATTGCAGAAATCATAC 59.033 34.615 0.00 0.00 34.79 2.39
2504 5688 5.369685 TGCGAACTTTATTGCAGAAATCA 57.630 34.783 0.00 0.00 34.79 2.57
2507 5691 7.273164 CACATATTGCGAACTTTATTGCAGAAA 59.727 33.333 0.00 0.00 40.67 2.52
2526 5710 7.334090 AGCGATCTCCTAAATATGCACATATT 58.666 34.615 9.57 9.57 43.67 1.28
2532 5716 7.175347 AGAATAGCGATCTCCTAAATATGCA 57.825 36.000 0.00 0.00 0.00 3.96
2542 5726 6.509418 AGAGATACAAGAATAGCGATCTCC 57.491 41.667 6.16 0.00 39.99 3.71
2544 5728 7.068103 CCCATAGAGATACAAGAATAGCGATCT 59.932 40.741 0.00 0.00 0.00 2.75
2546 5730 6.097554 CCCCATAGAGATACAAGAATAGCGAT 59.902 42.308 0.00 0.00 0.00 4.58
2547 5731 5.419155 CCCCATAGAGATACAAGAATAGCGA 59.581 44.000 0.00 0.00 0.00 4.93
2548 5732 5.655488 CCCCATAGAGATACAAGAATAGCG 58.345 45.833 0.00 0.00 0.00 4.26
2549 5733 5.046304 TGCCCCATAGAGATACAAGAATAGC 60.046 44.000 0.00 0.00 0.00 2.97
2550 5734 6.611613 TGCCCCATAGAGATACAAGAATAG 57.388 41.667 0.00 0.00 0.00 1.73
2554 5741 6.263754 TCATATGCCCCATAGAGATACAAGA 58.736 40.000 0.00 0.00 29.42 3.02
2566 5753 6.797707 AGACAAAGATATTCATATGCCCCAT 58.202 36.000 0.00 0.00 0.00 4.00
2590 5777 0.958382 GTACACCTGATGGCGCCAAA 60.958 55.000 36.33 23.74 36.63 3.28
2594 5781 1.084370 GTCTGTACACCTGATGGCGC 61.084 60.000 0.00 0.00 36.63 6.53
2596 5783 2.770164 AAGTCTGTACACCTGATGGC 57.230 50.000 0.00 0.00 36.63 4.40
2630 5841 8.004344 GCAGAAATATGTATTGCGTGTTAGTAG 58.996 37.037 0.00 0.00 0.00 2.57
2634 5845 5.586643 TGGCAGAAATATGTATTGCGTGTTA 59.413 36.000 0.00 0.00 0.00 2.41
2639 5850 4.201901 TGTGTGGCAGAAATATGTATTGCG 60.202 41.667 0.00 0.00 0.00 4.85
2641 5852 9.970395 ATATTTGTGTGGCAGAAATATGTATTG 57.030 29.630 17.60 0.00 43.62 1.90
2643 5854 9.970395 CAATATTTGTGTGGCAGAAATATGTAT 57.030 29.630 18.47 6.74 44.11 2.29
2648 5859 6.435591 TGACCAATATTTGTGTGGCAGAAATA 59.564 34.615 11.87 11.87 41.45 1.40
2662 5873 7.839680 AAAGGAGTTTCTGTGACCAATATTT 57.160 32.000 0.00 0.00 0.00 1.40
2663 5874 7.839680 AAAAGGAGTTTCTGTGACCAATATT 57.160 32.000 0.00 0.00 0.00 1.28
2664 5875 7.454260 GAAAAGGAGTTTCTGTGACCAATAT 57.546 36.000 0.00 0.00 42.15 1.28
2665 5876 6.877611 GAAAAGGAGTTTCTGTGACCAATA 57.122 37.500 0.00 0.00 42.15 1.90
2666 5877 5.774498 GAAAAGGAGTTTCTGTGACCAAT 57.226 39.130 0.00 0.00 42.15 3.16
2693 5904 8.522830 AGAATGATTCGTGTCACCAATATTTTT 58.477 29.630 0.00 0.00 34.02 1.94
2694 5905 8.055279 AGAATGATTCGTGTCACCAATATTTT 57.945 30.769 0.00 0.00 34.02 1.82
2718 5929 3.745975 TCAGACATTACCTGCGACAAAAG 59.254 43.478 0.00 0.00 0.00 2.27
2795 6006 0.690762 TTCCTCCTTTGAACGAGGGG 59.309 55.000 7.45 0.00 44.99 4.79
2840 6051 6.801539 TCAGATCAGGTTCACAAATGTAAC 57.198 37.500 0.00 0.00 0.00 2.50
2841 6052 6.998074 AGTTCAGATCAGGTTCACAAATGTAA 59.002 34.615 0.00 0.00 0.00 2.41
2843 6054 5.380043 AGTTCAGATCAGGTTCACAAATGT 58.620 37.500 0.00 0.00 0.00 2.71
2844 6055 5.954296 AGTTCAGATCAGGTTCACAAATG 57.046 39.130 0.00 0.00 0.00 2.32
2845 6056 6.774656 AGAAAGTTCAGATCAGGTTCACAAAT 59.225 34.615 0.00 0.00 0.00 2.32
2846 6057 6.122277 AGAAAGTTCAGATCAGGTTCACAAA 58.878 36.000 0.00 0.00 0.00 2.83
2888 6100 8.349983 GCCTGAAAGAAGTTAGACAATTGTAAA 58.650 33.333 11.95 6.41 34.07 2.01
2889 6101 7.040686 GGCCTGAAAGAAGTTAGACAATTGTAA 60.041 37.037 11.95 0.00 34.07 2.41
2890 6102 6.430000 GGCCTGAAAGAAGTTAGACAATTGTA 59.570 38.462 11.95 0.00 34.07 2.41
2891 6103 5.241728 GGCCTGAAAGAAGTTAGACAATTGT 59.758 40.000 11.78 11.78 34.07 2.71
2892 6104 5.474876 AGGCCTGAAAGAAGTTAGACAATTG 59.525 40.000 3.11 3.24 34.07 2.32
2894 6106 5.248380 AGGCCTGAAAGAAGTTAGACAAT 57.752 39.130 3.11 0.00 34.07 2.71
2895 6107 4.706842 AGGCCTGAAAGAAGTTAGACAA 57.293 40.909 3.11 0.00 34.07 3.18
2896 6108 4.102524 TGAAGGCCTGAAAGAAGTTAGACA 59.897 41.667 5.69 0.00 34.07 3.41
2897 6109 4.642429 TGAAGGCCTGAAAGAAGTTAGAC 58.358 43.478 5.69 0.00 34.07 2.59
2898 6110 4.974645 TGAAGGCCTGAAAGAAGTTAGA 57.025 40.909 5.69 0.00 34.07 2.10
2899 6111 5.620879 GCATTGAAGGCCTGAAAGAAGTTAG 60.621 44.000 5.69 0.00 34.07 2.34
2966 6178 1.243342 TTGGCCCAGCATCAAGTTCG 61.243 55.000 0.00 0.00 0.00 3.95
3022 6234 4.644685 ACAGTTGTGGCACTTAAGTTCAAT 59.355 37.500 19.83 0.00 0.00 2.57
3025 6237 3.877508 AGACAGTTGTGGCACTTAAGTTC 59.122 43.478 19.83 0.01 31.79 3.01
3039 6251 8.993121 AGTTTGTAAATGACAGATAGACAGTTG 58.007 33.333 0.00 0.00 39.88 3.16
3046 6258 7.493971 CAGGAGGAGTTTGTAAATGACAGATAG 59.506 40.741 0.00 0.00 39.88 2.08
3069 6281 8.454106 CAAACTATCATAAAAACTGAGACCAGG 58.546 37.037 0.00 0.00 44.60 4.45
3073 6285 9.220767 AGTCCAAACTATCATAAAAACTGAGAC 57.779 33.333 0.00 0.00 32.59 3.36
3074 6286 9.793259 AAGTCCAAACTATCATAAAAACTGAGA 57.207 29.630 0.00 0.00 33.48 3.27
3099 10424 5.539574 ACACCCAACTGATGATTTGATTCAA 59.460 36.000 0.00 0.00 0.00 2.69
3112 10437 5.362430 AGAAAGCAATTTAACACCCAACTGA 59.638 36.000 0.00 0.00 0.00 3.41
3117 10442 6.536941 GTGAAAAGAAAGCAATTTAACACCCA 59.463 34.615 0.00 0.00 0.00 4.51
3118 10443 6.018262 GGTGAAAAGAAAGCAATTTAACACCC 60.018 38.462 0.00 0.00 38.53 4.61
3119 10444 6.536941 TGGTGAAAAGAAAGCAATTTAACACC 59.463 34.615 0.00 0.00 41.29 4.16
3120 10445 7.277760 AGTGGTGAAAAGAAAGCAATTTAACAC 59.722 33.333 0.00 0.00 0.00 3.32
3121 10446 7.327214 AGTGGTGAAAAGAAAGCAATTTAACA 58.673 30.769 0.00 0.00 0.00 2.41
3122 10447 7.770801 AGTGGTGAAAAGAAAGCAATTTAAC 57.229 32.000 0.00 0.00 0.00 2.01
3123 10448 7.279758 CCAAGTGGTGAAAAGAAAGCAATTTAA 59.720 33.333 0.00 0.00 30.57 1.52
3124 10449 6.760770 CCAAGTGGTGAAAAGAAAGCAATTTA 59.239 34.615 0.00 0.00 30.57 1.40
3125 10450 5.585844 CCAAGTGGTGAAAAGAAAGCAATTT 59.414 36.000 0.00 0.00 30.57 1.82
3135 10460 2.863809 ACTAGCCCAAGTGGTGAAAAG 58.136 47.619 0.00 0.00 36.04 2.27
3151 10477 4.276431 GGGAACGACCTGAAGAGATACTAG 59.724 50.000 0.00 0.00 38.98 2.57
3154 10480 2.101082 GGGGAACGACCTGAAGAGATAC 59.899 54.545 0.00 0.00 38.98 2.24
3155 10481 2.024273 AGGGGAACGACCTGAAGAGATA 60.024 50.000 0.00 0.00 36.85 1.98
3163 10489 1.302511 CCACAAGGGGAACGACCTG 60.303 63.158 0.00 0.00 38.63 4.00
3175 10513 3.763360 TGGATGCTAACAAATCCCACAAG 59.237 43.478 0.00 0.00 41.53 3.16
3187 10525 1.003118 TGGACACAGGTGGATGCTAAC 59.997 52.381 4.24 0.00 34.19 2.34
3196 10534 5.703978 TGACATTATTTTGGACACAGGTG 57.296 39.130 0.00 0.00 0.00 4.00
3198 10536 5.104374 GCATGACATTATTTTGGACACAGG 58.896 41.667 0.00 0.00 0.00 4.00
3199 10537 5.957798 AGCATGACATTATTTTGGACACAG 58.042 37.500 0.00 0.00 0.00 3.66
3201 10539 5.577945 CCAAGCATGACATTATTTTGGACAC 59.422 40.000 0.00 0.00 36.56 3.67
3203 10541 5.723295 ACCAAGCATGACATTATTTTGGAC 58.277 37.500 17.42 0.00 37.58 4.02
3225 10563 5.207768 CAGCAGTTGTAATGTGAAAGTGAC 58.792 41.667 0.00 0.00 0.00 3.67
3226 10564 4.881273 ACAGCAGTTGTAATGTGAAAGTGA 59.119 37.500 0.00 0.00 38.56 3.41
3260 10598 3.488721 GCATCTTCACTAAGCAGGCAATG 60.489 47.826 0.00 0.00 32.36 2.82
3261 10599 2.686915 GCATCTTCACTAAGCAGGCAAT 59.313 45.455 0.00 0.00 32.36 3.56
3262 10600 2.086869 GCATCTTCACTAAGCAGGCAA 58.913 47.619 0.00 0.00 32.36 4.52
3263 10601 1.003464 TGCATCTTCACTAAGCAGGCA 59.997 47.619 0.00 0.00 31.71 4.75
3264 10602 1.399791 GTGCATCTTCACTAAGCAGGC 59.600 52.381 0.00 0.00 35.66 4.85
3265 10603 2.703416 TGTGCATCTTCACTAAGCAGG 58.297 47.619 0.00 0.00 37.81 4.85
3316 10654 6.324770 CCAGCTGGAATAAGTGGGATAAAAAT 59.675 38.462 29.88 0.00 37.39 1.82
3496 10834 5.121811 ACAGTCTTCATCACTTCATATGGC 58.878 41.667 2.13 0.00 0.00 4.40
3608 11056 0.892755 ACCTAATGGCTCGACGTGAA 59.107 50.000 0.00 0.00 36.63 3.18
3709 11157 2.392662 TGAACCCAAATTTGCAGGACA 58.607 42.857 17.37 13.65 0.00 4.02
3710 11158 3.244181 ACATGAACCCAAATTTGCAGGAC 60.244 43.478 17.37 11.86 0.00 3.85
3712 11160 3.405823 ACATGAACCCAAATTTGCAGG 57.594 42.857 12.92 11.74 0.00 4.85
3713 11161 5.138125 AGTACATGAACCCAAATTTGCAG 57.862 39.130 12.92 8.58 0.00 4.41
3715 11163 5.867174 GGTTAGTACATGAACCCAAATTTGC 59.133 40.000 12.92 0.00 39.43 3.68
3788 11295 1.186200 AGCAGGTCGATGTAGCTGAA 58.814 50.000 7.21 0.00 45.70 3.02
3989 11498 7.882791 TGAATCTGAATACTGACCTTTTGCTTA 59.117 33.333 0.00 0.00 0.00 3.09
3995 11504 6.627087 TCCTGAATCTGAATACTGACCTTT 57.373 37.500 0.00 0.00 0.00 3.11
4026 11535 5.152623 TCTCAAGAAGTAACACCTGATGG 57.847 43.478 0.00 0.00 39.83 3.51
4081 11609 0.823356 AACACATTGGAGGTGCGCTT 60.823 50.000 9.73 0.00 39.87 4.68
4084 11612 0.664166 GCAAACACATTGGAGGTGCG 60.664 55.000 0.00 0.00 39.87 5.34
4116 11644 9.694137 GTAAGTCTGGATAAATACAGGTCATAC 57.306 37.037 2.36 1.71 39.29 2.39
4136 11664 9.916397 CAACCGAATATCAATTAACAGTAAGTC 57.084 33.333 0.00 0.00 0.00 3.01
4164 11692 9.547753 GTTCTGGTGAATAGATGTACATTATGT 57.452 33.333 10.30 2.58 34.40 2.29
4165 11693 9.770097 AGTTCTGGTGAATAGATGTACATTATG 57.230 33.333 10.30 0.00 34.40 1.90
4223 11774 9.683069 CCTCCATTGCTTCATTTGTAATATAAC 57.317 33.333 0.00 0.00 0.00 1.89
4224 11775 9.639563 TCCTCCATTGCTTCATTTGTAATATAA 57.360 29.630 0.00 0.00 0.00 0.98
4226 11777 8.537728 TTCCTCCATTGCTTCATTTGTAATAT 57.462 30.769 0.00 0.00 0.00 1.28
4242 11793 4.294970 ACAGGTAGGGAATTTTCCTCCATT 59.705 41.667 0.00 0.00 46.72 3.16
4243 11794 3.858638 ACAGGTAGGGAATTTTCCTCCAT 59.141 43.478 0.00 0.00 46.72 3.41
4253 11805 2.840651 CAAGAGGTCACAGGTAGGGAAT 59.159 50.000 0.00 0.00 0.00 3.01
4255 11807 1.149288 ACAAGAGGTCACAGGTAGGGA 59.851 52.381 0.00 0.00 0.00 4.20
4289 11841 3.000727 GGATTTACACAAGAGACGGGTG 58.999 50.000 0.00 0.00 38.47 4.61
4321 11873 9.696917 GAGACCTGACATTCAAATATTTTGTTT 57.303 29.630 0.00 0.00 0.00 2.83
4329 11881 7.623630 TGATCAAGAGACCTGACATTCAAATA 58.376 34.615 0.00 0.00 0.00 1.40
4330 11882 6.479006 TGATCAAGAGACCTGACATTCAAAT 58.521 36.000 0.00 0.00 0.00 2.32
4333 11885 5.688814 ATGATCAAGAGACCTGACATTCA 57.311 39.130 0.00 0.00 0.00 2.57
4334 11886 6.347696 AGAATGATCAAGAGACCTGACATTC 58.652 40.000 0.00 0.00 41.07 2.67
4335 11887 6.310764 AGAATGATCAAGAGACCTGACATT 57.689 37.500 0.00 0.00 0.00 2.71
4398 11951 7.832187 TGAGAAATACTAAACCATCGGGAAAAT 59.168 33.333 0.00 0.00 38.05 1.82
4399 11952 7.120138 GTGAGAAATACTAAACCATCGGGAAAA 59.880 37.037 0.00 0.00 38.05 2.29
4400 11953 6.596497 GTGAGAAATACTAAACCATCGGGAAA 59.404 38.462 0.00 0.00 38.05 3.13
4401 11954 6.110707 GTGAGAAATACTAAACCATCGGGAA 58.889 40.000 0.00 0.00 38.05 3.97
4404 11957 5.671493 AGGTGAGAAATACTAAACCATCGG 58.329 41.667 0.00 0.00 37.69 4.18
4406 11959 9.232473 AGAAAAGGTGAGAAATACTAAACCATC 57.768 33.333 0.00 0.00 37.69 3.51
4409 11962 8.847196 ACAAGAAAAGGTGAGAAATACTAAACC 58.153 33.333 0.00 0.00 36.34 3.27
4418 11971 3.013921 ACGCACAAGAAAAGGTGAGAAA 58.986 40.909 0.00 0.00 38.07 2.52
4419 11972 2.639065 ACGCACAAGAAAAGGTGAGAA 58.361 42.857 0.00 0.00 38.07 2.87
4479 12032 0.034960 GAGAAGGCCCCTTTGTCCTC 60.035 60.000 0.00 0.00 36.26 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.