Multiple sequence alignment - TraesCS4D01G362800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G362800 chr4D 100.000 3230 0 0 1 3230 509059146 509055917 0.000000e+00 5965
1 TraesCS4D01G362800 chr4D 86.893 206 25 2 2878 3082 507402885 507402681 2.510000e-56 230
2 TraesCS4D01G362800 chr5A 88.772 2957 122 93 1 2852 696927290 696924439 0.000000e+00 3428
3 TraesCS4D01G362800 chr4B 89.601 2404 91 68 290 2569 658210673 658213041 0.000000e+00 2907
4 TraesCS4D01G362800 chr4B 88.742 302 18 9 2563 2848 658213784 658214085 3.960000e-94 355
5 TraesCS4D01G362800 chr4B 87.589 282 15 13 1 270 658210295 658210568 3.130000e-80 309
6 TraesCS4D01G362800 chr4B 83.830 235 32 5 2871 3103 69935106 69934876 5.430000e-53 219
7 TraesCS4D01G362800 chr5B 91.576 368 18 2 2871 3230 521997477 521997115 2.240000e-136 496
8 TraesCS4D01G362800 chrUn 88.889 360 28 4 2871 3230 22420488 22420141 1.780000e-117 433
9 TraesCS4D01G362800 chrUn 87.845 362 38 5 2871 3230 5425430 5425787 1.390000e-113 420
10 TraesCS4D01G362800 chr6B 84.573 363 46 6 2871 3230 672792844 672792489 5.130000e-93 351
11 TraesCS4D01G362800 chr1B 77.573 651 95 35 1530 2145 420685256 420685890 2.390000e-91 346
12 TraesCS4D01G362800 chr1B 88.517 209 24 0 1916 2124 583760667 583760875 1.490000e-63 254
13 TraesCS4D01G362800 chr1D 77.064 654 101 22 1530 2149 310815746 310815108 6.680000e-87 331
14 TraesCS4D01G362800 chr1D 88.995 209 23 0 1916 2124 432319760 432319968 3.200000e-65 259
15 TraesCS4D01G362800 chr1A 89.952 209 21 0 1916 2124 530781648 530781856 1.480000e-68 270
16 TraesCS4D01G362800 chr3D 88.889 207 22 1 1917 2123 380815056 380815261 1.490000e-63 254
17 TraesCS4D01G362800 chr3A 88.995 209 18 4 1917 2123 504024842 504025047 1.490000e-63 254
18 TraesCS4D01G362800 chr3B 84.524 252 37 2 2948 3198 690412037 690411787 6.920000e-62 248
19 TraesCS4D01G362800 chr3B 79.916 239 34 5 2891 3128 172956916 172956691 2.580000e-36 163
20 TraesCS4D01G362800 chr5D 86.408 206 26 2 2878 3082 458279835 458280039 1.170000e-54 224
21 TraesCS4D01G362800 chr6A 83.740 123 14 4 3087 3208 586368644 586368761 9.470000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G362800 chr4D 509055917 509059146 3229 True 5965.000000 5965 100.000 1 3230 1 chr4D.!!$R2 3229
1 TraesCS4D01G362800 chr5A 696924439 696927290 2851 True 3428.000000 3428 88.772 1 2852 1 chr5A.!!$R1 2851
2 TraesCS4D01G362800 chr4B 658210295 658214085 3790 False 1190.333333 2907 88.644 1 2848 3 chr4B.!!$F1 2847
3 TraesCS4D01G362800 chr1B 420685256 420685890 634 False 346.000000 346 77.573 1530 2145 1 chr1B.!!$F1 615
4 TraesCS4D01G362800 chr1D 310815108 310815746 638 True 331.000000 331 77.064 1530 2149 1 chr1D.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 1064 0.179134 CCACTACCAGCTCGCTGTAC 60.179 60.0 16.82 0.0 42.15 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2868 3950 0.040336 GCGCGATTCCGATCTAGTGA 60.04 55.0 12.1 0.0 38.22 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.830279 TTCCATCCGAGTGAGTACGT 58.170 50.000 0.00 0.00 0.00 3.57
34 35 2.696989 TCCATCCGAGTGAGTACGTA 57.303 50.000 0.00 0.00 0.00 3.57
35 36 2.283298 TCCATCCGAGTGAGTACGTAC 58.717 52.381 18.10 18.10 0.00 3.67
36 37 1.004185 CCATCCGAGTGAGTACGTACG 60.004 57.143 19.49 15.01 0.00 3.67
77 80 1.034838 TTATGGTGGTGAATGGGCGC 61.035 55.000 0.00 0.00 0.00 6.53
168 181 2.813901 GCTGCAACAAACCAGCCA 59.186 55.556 0.00 0.00 46.59 4.75
197 210 1.641123 CCCACCGTGTAAACGATGGC 61.641 60.000 14.01 0.00 45.16 4.40
206 219 3.244579 GTGTAAACGATGGCGATAAGGTC 59.755 47.826 0.00 0.00 41.64 3.85
215 228 3.588277 CGATAAGGTCGGGGTGATG 57.412 57.895 0.00 0.00 46.47 3.07
253 267 1.400494 GGCCGTGCCTAAGTAAATGTG 59.600 52.381 7.58 0.00 46.69 3.21
270 284 2.577300 GTGTCAACACATGCTACGTG 57.423 50.000 8.37 0.00 45.75 4.49
285 352 3.724751 GCTACGTGCAGAGAATTACTACG 59.275 47.826 0.00 0.00 42.31 3.51
289 356 3.717890 CGTGCAGAGAATTACTACGTACG 59.282 47.826 15.01 15.01 34.70 3.67
290 357 4.656041 GTGCAGAGAATTACTACGTACGT 58.344 43.478 25.98 25.98 0.00 3.57
291 358 5.500771 CGTGCAGAGAATTACTACGTACGTA 60.501 44.000 25.41 25.41 35.74 3.57
292 359 5.674580 GTGCAGAGAATTACTACGTACGTAC 59.325 44.000 23.60 15.90 0.00 3.67
295 362 7.043125 TGCAGAGAATTACTACGTACGTACTAG 60.043 40.741 23.60 18.27 0.00 2.57
324 428 1.598882 TGCATGCACGGTGAAAGTAA 58.401 45.000 18.46 0.00 0.00 2.24
325 429 1.265635 TGCATGCACGGTGAAAGTAAC 59.734 47.619 18.46 0.00 0.00 2.50
326 430 1.535462 GCATGCACGGTGAAAGTAACT 59.465 47.619 14.21 0.00 0.00 2.24
327 431 2.739913 GCATGCACGGTGAAAGTAACTA 59.260 45.455 14.21 0.00 0.00 2.24
328 432 3.424433 GCATGCACGGTGAAAGTAACTAC 60.424 47.826 14.21 0.00 0.00 2.73
329 433 3.738830 TGCACGGTGAAAGTAACTACT 57.261 42.857 13.29 0.00 38.39 2.57
331 435 5.199024 TGCACGGTGAAAGTAACTACTTA 57.801 39.130 13.29 0.00 45.17 2.24
332 436 4.984161 TGCACGGTGAAAGTAACTACTTAC 59.016 41.667 13.29 0.00 45.17 2.34
333 437 5.221303 TGCACGGTGAAAGTAACTACTTACT 60.221 40.000 13.29 0.00 45.17 2.24
358 462 6.586344 TGCTAATTTAACTGATCCAGAGAGG 58.414 40.000 0.45 0.00 35.18 3.69
447 584 2.027625 GTGAGTACGGGCAGTGCAC 61.028 63.158 18.61 13.50 37.96 4.57
465 602 2.991540 GGGCCCTGTTCCTTGTGC 60.992 66.667 17.04 0.00 0.00 4.57
466 603 3.365265 GGCCCTGTTCCTTGTGCG 61.365 66.667 0.00 0.00 0.00 5.34
467 604 2.594592 GCCCTGTTCCTTGTGCGT 60.595 61.111 0.00 0.00 0.00 5.24
468 605 2.908073 GCCCTGTTCCTTGTGCGTG 61.908 63.158 0.00 0.00 0.00 5.34
477 614 1.588667 CTTGTGCGTGTTGGGTTGC 60.589 57.895 0.00 0.00 0.00 4.17
478 615 2.276863 CTTGTGCGTGTTGGGTTGCA 62.277 55.000 0.00 0.00 34.44 4.08
479 616 1.877576 TTGTGCGTGTTGGGTTGCAA 61.878 50.000 0.00 0.00 39.34 4.08
504 651 1.000827 CCTAGCTCACTCTACCATGCG 60.001 57.143 0.00 0.00 0.00 4.73
557 704 0.747852 TCTACACCACGACACAAGCA 59.252 50.000 0.00 0.00 0.00 3.91
596 747 0.460987 GCTAGCTACTGCCAGTGGTG 60.461 60.000 11.74 6.89 40.80 4.17
663 814 1.133790 GCCCTTTCATGTGCTCATCAC 59.866 52.381 0.00 0.00 45.82 3.06
689 843 2.680352 TCTCACCTCACCTCGCCC 60.680 66.667 0.00 0.00 0.00 6.13
691 845 2.284625 TCACCTCACCTCGCCCAT 60.285 61.111 0.00 0.00 0.00 4.00
693 847 3.083997 ACCTCACCTCGCCCATCC 61.084 66.667 0.00 0.00 0.00 3.51
695 849 2.765807 CTCACCTCGCCCATCCCT 60.766 66.667 0.00 0.00 0.00 4.20
696 850 1.457643 CTCACCTCGCCCATCCCTA 60.458 63.158 0.00 0.00 0.00 3.53
697 851 1.457643 TCACCTCGCCCATCCCTAG 60.458 63.158 0.00 0.00 0.00 3.02
698 852 1.762460 CACCTCGCCCATCCCTAGT 60.762 63.158 0.00 0.00 0.00 2.57
699 853 1.457831 ACCTCGCCCATCCCTAGTC 60.458 63.158 0.00 0.00 0.00 2.59
700 854 1.152440 CCTCGCCCATCCCTAGTCT 60.152 63.158 0.00 0.00 0.00 3.24
790 948 3.444805 GACGCGACTGGAGCTCCT 61.445 66.667 32.28 14.69 36.82 3.69
879 1043 2.429058 CTCACTGCCACTGCCACT 59.571 61.111 0.00 0.00 36.33 4.00
880 1044 1.964891 CTCACTGCCACTGCCACTG 60.965 63.158 0.00 0.00 36.33 3.66
882 1046 4.962836 ACTGCCACTGCCACTGCC 62.963 66.667 0.00 0.00 36.33 4.85
883 1047 4.960866 CTGCCACTGCCACTGCCA 62.961 66.667 0.00 0.00 36.33 4.92
885 1049 4.962836 GCCACTGCCACTGCCACT 62.963 66.667 0.00 0.00 36.33 4.00
886 1050 2.749682 CCACTGCCACTGCCACTA 59.250 61.111 0.00 0.00 36.33 2.74
887 1051 1.672356 CCACTGCCACTGCCACTAC 60.672 63.158 0.00 0.00 36.33 2.73
889 1053 2.146724 ACTGCCACTGCCACTACCA 61.147 57.895 0.00 0.00 36.33 3.25
892 1056 3.072476 CCACTGCCACTACCAGCT 58.928 61.111 0.00 0.00 33.65 4.24
893 1057 1.078848 CCACTGCCACTACCAGCTC 60.079 63.158 0.00 0.00 33.65 4.09
894 1058 1.446792 CACTGCCACTACCAGCTCG 60.447 63.158 0.00 0.00 33.65 5.03
895 1059 2.510238 CTGCCACTACCAGCTCGC 60.510 66.667 0.00 0.00 0.00 5.03
896 1060 2.997315 TGCCACTACCAGCTCGCT 60.997 61.111 0.00 0.00 0.00 4.93
897 1061 2.510238 GCCACTACCAGCTCGCTG 60.510 66.667 11.83 11.83 43.26 5.18
898 1062 2.973899 CCACTACCAGCTCGCTGT 59.026 61.111 16.82 8.30 42.15 4.40
899 1063 1.945354 GCCACTACCAGCTCGCTGTA 61.945 60.000 16.82 8.92 42.15 2.74
900 1064 0.179134 CCACTACCAGCTCGCTGTAC 60.179 60.000 16.82 0.00 42.15 2.90
901 1065 0.179134 CACTACCAGCTCGCTGTACC 60.179 60.000 16.82 0.00 42.15 3.34
902 1066 1.064296 CTACCAGCTCGCTGTACCG 59.936 63.158 16.82 4.98 42.15 4.02
903 1067 2.938539 CTACCAGCTCGCTGTACCGC 62.939 65.000 16.82 0.00 42.15 5.68
905 1069 4.435436 CAGCTCGCTGTACCGCCA 62.435 66.667 10.65 0.00 39.10 5.69
1098 1270 2.361104 GCCTCGCCCATGAACCAA 60.361 61.111 0.00 0.00 0.00 3.67
1405 1601 5.289434 GTCCCGGTAATTACTTACTTCAACG 59.711 44.000 15.05 6.82 37.86 4.10
1428 1645 3.847621 ATCGCGTGGTCGATCTTAG 57.152 52.632 5.77 0.00 44.97 2.18
1454 1671 6.826668 TCCTGAAGAAATGTGTGAGAAACTA 58.173 36.000 0.00 0.00 0.00 2.24
1466 1683 7.861630 TGTGTGAGAAACTAAGAATTAAGCAC 58.138 34.615 0.00 0.00 0.00 4.40
1467 1684 7.010023 GTGTGAGAAACTAAGAATTAAGCACG 58.990 38.462 0.00 0.00 0.00 5.34
1469 1686 6.367969 GTGAGAAACTAAGAATTAAGCACGGA 59.632 38.462 0.00 0.00 0.00 4.69
1471 1688 7.117812 TGAGAAACTAAGAATTAAGCACGGAAG 59.882 37.037 0.00 0.00 0.00 3.46
1472 1689 7.159372 AGAAACTAAGAATTAAGCACGGAAGA 58.841 34.615 0.00 0.00 0.00 2.87
1474 1691 6.723131 ACTAAGAATTAAGCACGGAAGAAC 57.277 37.500 0.00 0.00 0.00 3.01
1475 1692 6.465084 ACTAAGAATTAAGCACGGAAGAACT 58.535 36.000 0.00 0.00 0.00 3.01
1477 1694 4.003648 AGAATTAAGCACGGAAGAACTGG 58.996 43.478 0.00 0.00 0.00 4.00
1479 1696 1.053424 TAAGCACGGAAGAACTGGGT 58.947 50.000 0.00 0.00 0.00 4.51
1480 1697 0.535102 AAGCACGGAAGAACTGGGTG 60.535 55.000 0.00 0.00 0.00 4.61
1509 1733 4.734266 TGATTGAGATCTAGCTAGCCAGA 58.266 43.478 15.39 15.39 33.28 3.86
1510 1734 4.766373 TGATTGAGATCTAGCTAGCCAGAG 59.234 45.833 17.85 10.31 33.28 3.35
1521 1755 3.131400 AGCTAGCCAGAGCACTTACTTAC 59.869 47.826 12.13 0.00 45.43 2.34
1737 1978 4.421479 CGGAGCAAGAGGTCGCGT 62.421 66.667 5.77 0.00 43.12 6.01
1809 2050 2.045242 CCGTCCTCCTCCTCGTCA 60.045 66.667 0.00 0.00 0.00 4.35
2271 2545 0.521291 CGAGCAGCCTAGCTAGCTAG 59.479 60.000 35.39 35.39 46.75 3.42
2272 2546 0.243636 GAGCAGCCTAGCTAGCTAGC 59.756 60.000 36.47 33.96 46.75 3.42
2290 2575 1.012486 GCAAGCAAGCAAGCATGGAC 61.012 55.000 7.55 0.00 34.07 4.02
2370 2668 7.595875 GCTTAATTTTGCATGCAAATTCCTTTT 59.404 29.630 38.44 26.13 44.14 2.27
2371 2669 9.465985 CTTAATTTTGCATGCAAATTCCTTTTT 57.534 25.926 38.44 24.82 44.14 1.94
2413 2716 4.735662 ACTATTTCGCGTTGCTTGTTTA 57.264 36.364 5.77 0.00 0.00 2.01
2502 2809 6.774673 ACCCGGGAATAAATTGAAAATGTTT 58.225 32.000 32.02 0.00 0.00 2.83
2503 2810 6.652900 ACCCGGGAATAAATTGAAAATGTTTG 59.347 34.615 32.02 0.00 0.00 2.93
2530 2837 6.261603 TCTTTTGCATTATCTATGTGAGCTGG 59.738 38.462 0.00 0.00 36.57 4.85
2610 3666 3.836949 CAGAGTGAAGAGAAGAGTCAGC 58.163 50.000 0.00 0.00 0.00 4.26
2651 3707 0.462759 GGTGGCCATCAGTGAGTAGC 60.463 60.000 12.38 0.98 0.00 3.58
2668 3736 3.184683 CAGGTCAAGCGAGCGAGC 61.185 66.667 0.00 0.00 44.60 5.03
2672 3740 4.482684 TCAAGCGAGCGAGCGAGG 62.483 66.667 1.41 0.00 43.00 4.63
2706 3774 2.028748 CGGAAGAAAGGTAAGGGACGAA 60.029 50.000 0.00 0.00 0.00 3.85
2707 3775 3.597255 GGAAGAAAGGTAAGGGACGAAG 58.403 50.000 0.00 0.00 0.00 3.79
2744 3821 0.028902 GTGAGTTGGTTCGTTGGTGC 59.971 55.000 0.00 0.00 0.00 5.01
2791 3868 1.308998 CCGGGAACAATGCTATGTCC 58.691 55.000 0.00 0.00 31.81 4.02
2792 3869 1.308998 CGGGAACAATGCTATGTCCC 58.691 55.000 14.23 14.23 37.33 4.46
2793 3870 1.692411 GGGAACAATGCTATGTCCCC 58.308 55.000 1.28 1.28 40.99 4.81
2827 3909 2.057830 TCACCTCACGTGATGGCTT 58.942 52.632 20.40 5.17 46.80 4.35
2831 3913 0.460987 CCTCACGTGATGGCTTCTCC 60.461 60.000 20.40 0.00 0.00 3.71
2836 3918 0.539051 CGTGATGGCTTCTCCTCCTT 59.461 55.000 1.86 0.00 35.26 3.36
2848 3930 0.321671 TCCTCCTTCACTTGCTTCCG 59.678 55.000 0.00 0.00 0.00 4.30
2852 3934 1.000955 TCCTTCACTTGCTTCCGACTC 59.999 52.381 0.00 0.00 0.00 3.36
2853 3935 1.001406 CCTTCACTTGCTTCCGACTCT 59.999 52.381 0.00 0.00 0.00 3.24
2854 3936 2.231478 CCTTCACTTGCTTCCGACTCTA 59.769 50.000 0.00 0.00 0.00 2.43
2855 3937 3.246619 CTTCACTTGCTTCCGACTCTAC 58.753 50.000 0.00 0.00 0.00 2.59
2856 3938 2.515854 TCACTTGCTTCCGACTCTACT 58.484 47.619 0.00 0.00 0.00 2.57
2857 3939 2.891580 TCACTTGCTTCCGACTCTACTT 59.108 45.455 0.00 0.00 0.00 2.24
2858 3940 2.989840 CACTTGCTTCCGACTCTACTTG 59.010 50.000 0.00 0.00 0.00 3.16
2859 3941 1.996191 CTTGCTTCCGACTCTACTTGC 59.004 52.381 0.00 0.00 0.00 4.01
2860 3942 1.257743 TGCTTCCGACTCTACTTGCT 58.742 50.000 0.00 0.00 0.00 3.91
2861 3943 1.618837 TGCTTCCGACTCTACTTGCTT 59.381 47.619 0.00 0.00 0.00 3.91
2862 3944 2.263945 GCTTCCGACTCTACTTGCTTC 58.736 52.381 0.00 0.00 0.00 3.86
2863 3945 2.094442 GCTTCCGACTCTACTTGCTTCT 60.094 50.000 0.00 0.00 0.00 2.85
2864 3946 3.128938 GCTTCCGACTCTACTTGCTTCTA 59.871 47.826 0.00 0.00 0.00 2.10
2865 3947 4.664188 CTTCCGACTCTACTTGCTTCTAC 58.336 47.826 0.00 0.00 0.00 2.59
2866 3948 3.952931 TCCGACTCTACTTGCTTCTACT 58.047 45.455 0.00 0.00 0.00 2.57
2867 3949 5.095145 TCCGACTCTACTTGCTTCTACTA 57.905 43.478 0.00 0.00 0.00 1.82
2868 3950 5.682659 TCCGACTCTACTTGCTTCTACTAT 58.317 41.667 0.00 0.00 0.00 2.12
2869 3951 5.759273 TCCGACTCTACTTGCTTCTACTATC 59.241 44.000 0.00 0.00 0.00 2.08
2870 3952 5.527951 CCGACTCTACTTGCTTCTACTATCA 59.472 44.000 0.00 0.00 0.00 2.15
2871 3953 6.423862 CGACTCTACTTGCTTCTACTATCAC 58.576 44.000 0.00 0.00 0.00 3.06
2872 3954 6.259167 CGACTCTACTTGCTTCTACTATCACT 59.741 42.308 0.00 0.00 0.00 3.41
2873 3955 7.438757 CGACTCTACTTGCTTCTACTATCACTA 59.561 40.741 0.00 0.00 0.00 2.74
2874 3956 8.671384 ACTCTACTTGCTTCTACTATCACTAG 57.329 38.462 0.00 0.00 0.00 2.57
2875 3957 8.487848 ACTCTACTTGCTTCTACTATCACTAGA 58.512 37.037 0.00 0.00 0.00 2.43
2876 3958 9.502091 CTCTACTTGCTTCTACTATCACTAGAT 57.498 37.037 0.00 0.00 38.29 1.98
2877 3959 9.496873 TCTACTTGCTTCTACTATCACTAGATC 57.503 37.037 0.00 0.00 35.67 2.75
2878 3960 7.197071 ACTTGCTTCTACTATCACTAGATCG 57.803 40.000 0.00 0.00 35.67 3.69
2879 3961 6.205853 ACTTGCTTCTACTATCACTAGATCGG 59.794 42.308 0.00 0.00 35.67 4.18
2880 3962 5.866207 TGCTTCTACTATCACTAGATCGGA 58.134 41.667 0.00 0.00 35.67 4.55
2881 3963 6.296803 TGCTTCTACTATCACTAGATCGGAA 58.703 40.000 0.00 0.00 35.67 4.30
2882 3964 6.943146 TGCTTCTACTATCACTAGATCGGAAT 59.057 38.462 0.00 0.00 35.67 3.01
2883 3965 7.119992 TGCTTCTACTATCACTAGATCGGAATC 59.880 40.741 0.00 0.00 35.67 2.52
2884 3966 7.598189 TTCTACTATCACTAGATCGGAATCG 57.402 40.000 0.00 0.00 36.97 3.34
2885 3967 4.688511 ACTATCACTAGATCGGAATCGC 57.311 45.455 0.00 0.00 36.97 4.58
2886 3968 2.620779 ATCACTAGATCGGAATCGCG 57.379 50.000 0.00 0.00 36.97 5.87
2887 3969 0.040336 TCACTAGATCGGAATCGCGC 60.040 55.000 0.00 0.00 36.97 6.86
2888 3970 1.004277 CACTAGATCGGAATCGCGCC 61.004 60.000 0.00 0.00 36.97 6.53
2889 3971 1.285950 CTAGATCGGAATCGCGCCA 59.714 57.895 0.00 0.00 36.97 5.69
2890 3972 0.318699 CTAGATCGGAATCGCGCCAA 60.319 55.000 0.00 0.00 36.97 4.52
2891 3973 0.318699 TAGATCGGAATCGCGCCAAG 60.319 55.000 0.00 0.00 36.97 3.61
2892 3974 2.588877 ATCGGAATCGCGCCAAGG 60.589 61.111 0.00 0.00 36.13 3.61
2913 3995 4.717313 GAGGGTGCCGGTCCCAAC 62.717 72.222 29.22 21.14 46.82 3.77
2915 3997 4.360405 GGGTGCCGGTCCCAACAT 62.360 66.667 25.06 0.00 44.05 2.71
2916 3998 2.282887 GGTGCCGGTCCCAACATT 60.283 61.111 1.90 0.00 0.00 2.71
2917 3999 1.906333 GGTGCCGGTCCCAACATTT 60.906 57.895 1.90 0.00 0.00 2.32
2918 4000 1.288752 GTGCCGGTCCCAACATTTG 59.711 57.895 1.90 0.00 0.00 2.32
2919 4001 1.151679 TGCCGGTCCCAACATTTGA 59.848 52.632 1.90 0.00 0.00 2.69
2920 4002 0.251564 TGCCGGTCCCAACATTTGAT 60.252 50.000 1.90 0.00 0.00 2.57
2921 4003 0.455815 GCCGGTCCCAACATTTGATC 59.544 55.000 1.90 0.00 0.00 2.92
2922 4004 1.832883 CCGGTCCCAACATTTGATCA 58.167 50.000 0.00 0.00 0.00 2.92
2923 4005 2.166829 CCGGTCCCAACATTTGATCAA 58.833 47.619 3.38 3.38 0.00 2.57
2924 4006 2.164219 CCGGTCCCAACATTTGATCAAG 59.836 50.000 8.41 0.49 0.00 3.02
2925 4007 2.415893 CGGTCCCAACATTTGATCAAGC 60.416 50.000 8.41 0.00 0.00 4.01
2926 4008 2.562298 GGTCCCAACATTTGATCAAGCA 59.438 45.455 8.41 0.00 0.00 3.91
2927 4009 3.367703 GGTCCCAACATTTGATCAAGCAG 60.368 47.826 8.41 5.40 0.00 4.24
2928 4010 2.827322 TCCCAACATTTGATCAAGCAGG 59.173 45.455 8.41 7.68 0.00 4.85
2929 4011 2.564062 CCCAACATTTGATCAAGCAGGT 59.436 45.455 8.41 0.00 0.00 4.00
2930 4012 3.763360 CCCAACATTTGATCAAGCAGGTA 59.237 43.478 8.41 0.00 0.00 3.08
2931 4013 4.220382 CCCAACATTTGATCAAGCAGGTAA 59.780 41.667 8.41 0.00 0.00 2.85
2932 4014 5.105228 CCCAACATTTGATCAAGCAGGTAAT 60.105 40.000 8.41 0.00 0.00 1.89
2933 4015 5.808540 CCAACATTTGATCAAGCAGGTAATG 59.191 40.000 8.41 9.91 0.00 1.90
2947 4029 5.854010 CAGGTAATGCTAAGTCAGTAGGA 57.146 43.478 0.00 0.00 0.00 2.94
2948 4030 6.222038 CAGGTAATGCTAAGTCAGTAGGAA 57.778 41.667 0.00 0.00 0.00 3.36
2949 4031 6.821388 CAGGTAATGCTAAGTCAGTAGGAAT 58.179 40.000 0.00 0.00 0.00 3.01
2950 4032 6.926272 CAGGTAATGCTAAGTCAGTAGGAATC 59.074 42.308 0.00 0.00 0.00 2.52
2951 4033 6.042208 AGGTAATGCTAAGTCAGTAGGAATCC 59.958 42.308 0.00 0.00 0.00 3.01
2952 4034 5.957771 AATGCTAAGTCAGTAGGAATCCA 57.042 39.130 0.61 0.00 0.00 3.41
2953 4035 5.543507 ATGCTAAGTCAGTAGGAATCCAG 57.456 43.478 0.61 0.00 0.00 3.86
2954 4036 4.610333 TGCTAAGTCAGTAGGAATCCAGA 58.390 43.478 0.61 0.00 0.00 3.86
2955 4037 5.211973 TGCTAAGTCAGTAGGAATCCAGAT 58.788 41.667 0.61 0.00 0.00 2.90
2956 4038 5.663106 TGCTAAGTCAGTAGGAATCCAGATT 59.337 40.000 0.61 0.00 0.00 2.40
2957 4039 6.156949 TGCTAAGTCAGTAGGAATCCAGATTT 59.843 38.462 0.61 0.13 0.00 2.17
2958 4040 7.344612 TGCTAAGTCAGTAGGAATCCAGATTTA 59.655 37.037 0.61 1.27 0.00 1.40
2959 4041 8.204836 GCTAAGTCAGTAGGAATCCAGATTTAA 58.795 37.037 0.61 0.00 0.00 1.52
2960 4042 9.535878 CTAAGTCAGTAGGAATCCAGATTTAAC 57.464 37.037 0.61 0.00 0.00 2.01
2961 4043 7.496346 AGTCAGTAGGAATCCAGATTTAACA 57.504 36.000 0.61 0.00 0.00 2.41
2962 4044 8.095452 AGTCAGTAGGAATCCAGATTTAACAT 57.905 34.615 0.61 0.00 0.00 2.71
2963 4045 9.213777 AGTCAGTAGGAATCCAGATTTAACATA 57.786 33.333 0.61 0.00 0.00 2.29
2966 4048 8.725148 CAGTAGGAATCCAGATTTAACATATGC 58.275 37.037 0.61 0.00 0.00 3.14
2967 4049 8.439971 AGTAGGAATCCAGATTTAACATATGCA 58.560 33.333 0.61 0.00 0.00 3.96
2968 4050 9.236006 GTAGGAATCCAGATTTAACATATGCAT 57.764 33.333 3.79 3.79 0.00 3.96
2969 4051 8.716674 AGGAATCCAGATTTAACATATGCATT 57.283 30.769 3.54 0.00 0.00 3.56
2970 4052 8.800332 AGGAATCCAGATTTAACATATGCATTC 58.200 33.333 3.54 0.00 0.00 2.67
2971 4053 8.579006 GGAATCCAGATTTAACATATGCATTCA 58.421 33.333 3.54 0.00 0.00 2.57
2975 4057 9.571816 TCCAGATTTAACATATGCATTCATACA 57.428 29.630 3.54 0.00 37.94 2.29
3020 4102 9.941664 AAGAAATATTCAAATGTGATAGAAGCG 57.058 29.630 0.00 0.00 32.48 4.68
3021 4103 9.330063 AGAAATATTCAAATGTGATAGAAGCGA 57.670 29.630 0.00 0.00 32.48 4.93
3022 4104 9.591404 GAAATATTCAAATGTGATAGAAGCGAG 57.409 33.333 0.00 0.00 32.48 5.03
3023 4105 8.893219 AATATTCAAATGTGATAGAAGCGAGA 57.107 30.769 0.00 0.00 32.48 4.04
3024 4106 6.595772 ATTCAAATGTGATAGAAGCGAGAC 57.404 37.500 0.00 0.00 32.48 3.36
3025 4107 5.072040 TCAAATGTGATAGAAGCGAGACA 57.928 39.130 0.00 0.00 0.00 3.41
3026 4108 5.664457 TCAAATGTGATAGAAGCGAGACAT 58.336 37.500 0.00 0.00 0.00 3.06
3027 4109 6.805713 TCAAATGTGATAGAAGCGAGACATA 58.194 36.000 0.00 0.00 0.00 2.29
3028 4110 6.920210 TCAAATGTGATAGAAGCGAGACATAG 59.080 38.462 0.00 0.00 0.00 2.23
3029 4111 6.398234 AATGTGATAGAAGCGAGACATAGT 57.602 37.500 0.00 0.00 0.00 2.12
3030 4112 5.175090 TGTGATAGAAGCGAGACATAGTG 57.825 43.478 0.00 0.00 0.00 2.74
3031 4113 4.036852 TGTGATAGAAGCGAGACATAGTGG 59.963 45.833 0.00 0.00 0.00 4.00
3032 4114 4.036971 GTGATAGAAGCGAGACATAGTGGT 59.963 45.833 0.00 0.00 0.00 4.16
3033 4115 2.949451 AGAAGCGAGACATAGTGGTG 57.051 50.000 0.00 0.00 0.00 4.17
3034 4116 1.134965 AGAAGCGAGACATAGTGGTGC 60.135 52.381 0.00 0.00 0.00 5.01
3035 4117 0.898320 AAGCGAGACATAGTGGTGCT 59.102 50.000 0.00 0.00 0.00 4.40
3036 4118 0.457851 AGCGAGACATAGTGGTGCTC 59.542 55.000 0.00 0.00 0.00 4.26
3037 4119 0.173481 GCGAGACATAGTGGTGCTCA 59.827 55.000 0.00 0.00 0.00 4.26
3038 4120 1.404181 GCGAGACATAGTGGTGCTCAA 60.404 52.381 0.00 0.00 0.00 3.02
3039 4121 2.739932 GCGAGACATAGTGGTGCTCAAT 60.740 50.000 0.00 0.00 0.00 2.57
3040 4122 3.490933 GCGAGACATAGTGGTGCTCAATA 60.491 47.826 0.00 0.00 0.00 1.90
3041 4123 4.797604 GCGAGACATAGTGGTGCTCAATAT 60.798 45.833 0.00 0.00 37.14 1.28
3042 4124 4.920340 CGAGACATAGTGGTGCTCAATATC 59.080 45.833 0.00 0.00 34.80 1.63
3043 4125 5.278709 CGAGACATAGTGGTGCTCAATATCT 60.279 44.000 0.00 0.00 34.80 1.98
3044 4126 5.851720 AGACATAGTGGTGCTCAATATCTG 58.148 41.667 0.00 0.00 34.80 2.90
3045 4127 4.384056 ACATAGTGGTGCTCAATATCTGC 58.616 43.478 0.00 0.00 34.80 4.26
3046 4128 4.141642 ACATAGTGGTGCTCAATATCTGCA 60.142 41.667 0.00 0.00 34.80 4.41
3047 4129 3.572632 AGTGGTGCTCAATATCTGCAT 57.427 42.857 0.00 0.00 39.00 3.96
3048 4130 3.211865 AGTGGTGCTCAATATCTGCATG 58.788 45.455 0.00 0.00 39.00 4.06
3049 4131 3.118149 AGTGGTGCTCAATATCTGCATGA 60.118 43.478 0.00 0.00 39.00 3.07
3050 4132 3.003068 GTGGTGCTCAATATCTGCATGAC 59.997 47.826 0.00 0.00 39.00 3.06
3051 4133 3.208594 GGTGCTCAATATCTGCATGACA 58.791 45.455 0.00 0.00 39.00 3.58
3052 4134 3.003068 GGTGCTCAATATCTGCATGACAC 59.997 47.826 0.00 0.00 39.00 3.67
3053 4135 3.875727 GTGCTCAATATCTGCATGACACT 59.124 43.478 0.00 0.00 39.00 3.55
3054 4136 5.052481 GTGCTCAATATCTGCATGACACTA 58.948 41.667 0.00 0.00 39.00 2.74
3055 4137 5.699915 GTGCTCAATATCTGCATGACACTAT 59.300 40.000 0.00 0.00 39.00 2.12
3056 4138 6.870439 GTGCTCAATATCTGCATGACACTATA 59.130 38.462 0.00 0.00 39.00 1.31
3057 4139 7.386025 GTGCTCAATATCTGCATGACACTATAA 59.614 37.037 0.00 0.00 39.00 0.98
3058 4140 7.601508 TGCTCAATATCTGCATGACACTATAAG 59.398 37.037 0.00 0.00 0.00 1.73
3059 4141 7.816513 GCTCAATATCTGCATGACACTATAAGA 59.183 37.037 0.00 0.00 0.00 2.10
3060 4142 9.138062 CTCAATATCTGCATGACACTATAAGAC 57.862 37.037 0.00 0.00 0.00 3.01
3061 4143 8.641541 TCAATATCTGCATGACACTATAAGACA 58.358 33.333 0.00 0.00 0.00 3.41
3062 4144 8.923683 CAATATCTGCATGACACTATAAGACAG 58.076 37.037 0.00 0.00 0.00 3.51
3063 4145 6.721704 ATCTGCATGACACTATAAGACAGA 57.278 37.500 0.00 0.00 36.21 3.41
3064 4146 6.530019 TCTGCATGACACTATAAGACAGAA 57.470 37.500 0.00 0.00 0.00 3.02
3065 4147 7.117285 TCTGCATGACACTATAAGACAGAAT 57.883 36.000 0.00 0.00 0.00 2.40
3066 4148 7.205992 TCTGCATGACACTATAAGACAGAATC 58.794 38.462 0.00 0.00 0.00 2.52
3067 4149 6.877236 TGCATGACACTATAAGACAGAATCA 58.123 36.000 0.00 0.00 0.00 2.57
3068 4150 7.330262 TGCATGACACTATAAGACAGAATCAA 58.670 34.615 0.00 0.00 0.00 2.57
3069 4151 7.989170 TGCATGACACTATAAGACAGAATCAAT 59.011 33.333 0.00 0.00 0.00 2.57
3070 4152 8.834465 GCATGACACTATAAGACAGAATCAATT 58.166 33.333 0.00 0.00 0.00 2.32
3073 4155 9.942850 TGACACTATAAGACAGAATCAATTTCA 57.057 29.630 0.00 0.00 36.75 2.69
3075 4157 9.950496 ACACTATAAGACAGAATCAATTTCAGT 57.050 29.630 0.00 0.00 36.83 3.41
3077 4159 8.887717 ACTATAAGACAGAATCAATTTCAGTGC 58.112 33.333 0.00 0.00 34.53 4.40
3078 4160 4.675190 AGACAGAATCAATTTCAGTGCG 57.325 40.909 0.00 0.00 34.53 5.34
3079 4161 4.067896 AGACAGAATCAATTTCAGTGCGT 58.932 39.130 0.00 0.00 34.53 5.24
3080 4162 4.516698 AGACAGAATCAATTTCAGTGCGTT 59.483 37.500 0.00 0.00 34.53 4.84
3081 4163 4.787598 ACAGAATCAATTTCAGTGCGTTC 58.212 39.130 0.00 0.00 36.75 3.95
3082 4164 4.275689 ACAGAATCAATTTCAGTGCGTTCA 59.724 37.500 0.00 0.00 36.75 3.18
3083 4165 5.048504 ACAGAATCAATTTCAGTGCGTTCAT 60.049 36.000 0.00 0.00 36.75 2.57
3084 4166 6.149308 ACAGAATCAATTTCAGTGCGTTCATA 59.851 34.615 0.00 0.00 36.75 2.15
3085 4167 7.022979 CAGAATCAATTTCAGTGCGTTCATAA 58.977 34.615 0.00 0.00 36.75 1.90
3086 4168 7.538334 CAGAATCAATTTCAGTGCGTTCATAAA 59.462 33.333 0.00 0.00 36.75 1.40
3087 4169 8.081633 AGAATCAATTTCAGTGCGTTCATAAAA 58.918 29.630 0.00 0.00 36.75 1.52
3088 4170 8.586570 AATCAATTTCAGTGCGTTCATAAAAA 57.413 26.923 0.00 0.00 0.00 1.94
3089 4171 7.388290 TCAATTTCAGTGCGTTCATAAAAAC 57.612 32.000 0.00 0.00 0.00 2.43
3090 4172 6.975197 TCAATTTCAGTGCGTTCATAAAAACA 59.025 30.769 0.00 0.00 0.00 2.83
3091 4173 6.747659 ATTTCAGTGCGTTCATAAAAACAC 57.252 33.333 0.00 0.00 0.00 3.32
3092 4174 4.884458 TCAGTGCGTTCATAAAAACACA 57.116 36.364 0.00 0.00 0.00 3.72
3093 4175 5.236655 TCAGTGCGTTCATAAAAACACAA 57.763 34.783 0.00 0.00 0.00 3.33
3094 4176 5.641709 TCAGTGCGTTCATAAAAACACAAA 58.358 33.333 0.00 0.00 0.00 2.83
3095 4177 6.093404 TCAGTGCGTTCATAAAAACACAAAA 58.907 32.000 0.00 0.00 0.00 2.44
3096 4178 6.252441 TCAGTGCGTTCATAAAAACACAAAAG 59.748 34.615 0.00 0.00 0.00 2.27
3097 4179 6.252441 CAGTGCGTTCATAAAAACACAAAAGA 59.748 34.615 0.00 0.00 0.00 2.52
3098 4180 6.978080 AGTGCGTTCATAAAAACACAAAAGAT 59.022 30.769 0.00 0.00 0.00 2.40
3099 4181 8.132362 AGTGCGTTCATAAAAACACAAAAGATA 58.868 29.630 0.00 0.00 0.00 1.98
3100 4182 8.417176 GTGCGTTCATAAAAACACAAAAGATAG 58.583 33.333 0.00 0.00 0.00 2.08
3101 4183 7.114247 TGCGTTCATAAAAACACAAAAGATAGC 59.886 33.333 0.00 0.00 0.00 2.97
3102 4184 7.410407 GCGTTCATAAAAACACAAAAGATAGCC 60.410 37.037 0.00 0.00 0.00 3.93
3103 4185 7.201232 CGTTCATAAAAACACAAAAGATAGCCG 60.201 37.037 0.00 0.00 0.00 5.52
3104 4186 6.090129 TCATAAAAACACAAAAGATAGCCGC 58.910 36.000 0.00 0.00 0.00 6.53
3105 4187 4.584327 AAAAACACAAAAGATAGCCGCT 57.416 36.364 0.00 0.00 0.00 5.52
3106 4188 3.559238 AAACACAAAAGATAGCCGCTG 57.441 42.857 2.16 0.00 0.00 5.18
3107 4189 1.453155 ACACAAAAGATAGCCGCTGG 58.547 50.000 2.16 0.00 0.00 4.85
3108 4190 1.003118 ACACAAAAGATAGCCGCTGGA 59.997 47.619 2.16 0.00 0.00 3.86
3109 4191 2.292267 CACAAAAGATAGCCGCTGGAT 58.708 47.619 2.16 0.00 0.00 3.41
3110 4192 3.118408 ACACAAAAGATAGCCGCTGGATA 60.118 43.478 2.16 0.00 0.00 2.59
3111 4193 4.067896 CACAAAAGATAGCCGCTGGATAT 58.932 43.478 2.16 5.27 36.96 1.63
3112 4194 4.067896 ACAAAAGATAGCCGCTGGATATG 58.932 43.478 2.16 0.00 34.15 1.78
3113 4195 4.202357 ACAAAAGATAGCCGCTGGATATGA 60.202 41.667 2.16 0.00 34.15 2.15
3114 4196 4.623932 AAAGATAGCCGCTGGATATGAA 57.376 40.909 2.16 0.00 34.15 2.57
3115 4197 3.883830 AGATAGCCGCTGGATATGAAG 57.116 47.619 2.16 0.00 34.15 3.02
3116 4198 3.169099 AGATAGCCGCTGGATATGAAGT 58.831 45.455 2.16 0.00 34.15 3.01
3117 4199 3.580458 AGATAGCCGCTGGATATGAAGTT 59.420 43.478 2.16 0.00 34.15 2.66
3118 4200 2.717639 AGCCGCTGGATATGAAGTTT 57.282 45.000 0.00 0.00 0.00 2.66
3119 4201 2.292267 AGCCGCTGGATATGAAGTTTG 58.708 47.619 0.00 0.00 0.00 2.93
3120 4202 2.092968 AGCCGCTGGATATGAAGTTTGA 60.093 45.455 0.00 0.00 0.00 2.69
3121 4203 2.682856 GCCGCTGGATATGAAGTTTGAA 59.317 45.455 0.00 0.00 0.00 2.69
3122 4204 3.128589 GCCGCTGGATATGAAGTTTGAAA 59.871 43.478 0.00 0.00 0.00 2.69
3123 4205 4.662145 CCGCTGGATATGAAGTTTGAAAC 58.338 43.478 0.00 0.00 0.00 2.78
3124 4206 4.438744 CCGCTGGATATGAAGTTTGAAACC 60.439 45.833 4.14 0.00 0.00 3.27
3125 4207 4.155826 CGCTGGATATGAAGTTTGAAACCA 59.844 41.667 4.14 0.00 0.00 3.67
3126 4208 5.335583 CGCTGGATATGAAGTTTGAAACCAA 60.336 40.000 4.14 0.00 0.00 3.67
3127 4209 6.454795 GCTGGATATGAAGTTTGAAACCAAA 58.545 36.000 4.14 0.00 0.00 3.28
3128 4210 6.928492 GCTGGATATGAAGTTTGAAACCAAAA 59.072 34.615 4.14 0.00 35.54 2.44
3129 4211 7.116805 GCTGGATATGAAGTTTGAAACCAAAAG 59.883 37.037 4.14 0.00 35.54 2.27
3130 4212 6.928492 TGGATATGAAGTTTGAAACCAAAAGC 59.072 34.615 4.14 0.00 35.54 3.51
3131 4213 6.089417 GGATATGAAGTTTGAAACCAAAAGCG 59.911 38.462 4.14 0.00 35.54 4.68
3132 4214 4.181309 TGAAGTTTGAAACCAAAAGCGT 57.819 36.364 4.14 0.00 35.54 5.07
3133 4215 5.312120 TGAAGTTTGAAACCAAAAGCGTA 57.688 34.783 4.14 0.00 35.54 4.42
3134 4216 5.336744 TGAAGTTTGAAACCAAAAGCGTAG 58.663 37.500 4.14 0.00 35.54 3.51
3148 4230 3.713936 CGTAGCCACTCGACATGAA 57.286 52.632 0.00 0.00 0.00 2.57
3149 4231 1.550065 CGTAGCCACTCGACATGAAG 58.450 55.000 0.00 0.00 0.00 3.02
3150 4232 1.135373 CGTAGCCACTCGACATGAAGT 60.135 52.381 0.00 0.00 0.00 3.01
3151 4233 2.671351 CGTAGCCACTCGACATGAAGTT 60.671 50.000 0.00 0.00 0.00 2.66
3152 4234 2.086054 AGCCACTCGACATGAAGTTC 57.914 50.000 0.00 0.00 0.00 3.01
3153 4235 0.716108 GCCACTCGACATGAAGTTCG 59.284 55.000 0.00 0.00 0.00 3.95
3154 4236 1.668919 GCCACTCGACATGAAGTTCGA 60.669 52.381 0.00 2.46 0.00 3.71
3155 4237 2.881074 CCACTCGACATGAAGTTCGAT 58.119 47.619 0.00 0.00 32.32 3.59
3156 4238 3.733988 GCCACTCGACATGAAGTTCGATA 60.734 47.826 0.00 0.00 32.32 2.92
3157 4239 3.791887 CCACTCGACATGAAGTTCGATAC 59.208 47.826 0.00 0.00 32.32 2.24
3158 4240 3.478874 CACTCGACATGAAGTTCGATACG 59.521 47.826 0.00 2.66 32.32 3.06
3159 4241 3.373130 ACTCGACATGAAGTTCGATACGA 59.627 43.478 0.00 11.99 32.32 3.43
3160 4242 4.142752 ACTCGACATGAAGTTCGATACGAA 60.143 41.667 0.00 2.48 43.75 3.85
3176 4258 9.955208 TTCGATACGAAAAGCACTATAATAGAA 57.045 29.630 4.13 0.00 43.00 2.10
3177 4259 9.608617 TCGATACGAAAAGCACTATAATAGAAG 57.391 33.333 0.00 0.00 31.06 2.85
3178 4260 9.608617 CGATACGAAAAGCACTATAATAGAAGA 57.391 33.333 0.00 0.00 0.00 2.87
3180 4262 9.915629 ATACGAAAAGCACTATAATAGAAGAGG 57.084 33.333 0.00 0.00 0.00 3.69
3181 4263 7.210873 ACGAAAAGCACTATAATAGAAGAGGG 58.789 38.462 0.00 0.00 0.00 4.30
3182 4264 7.069578 ACGAAAAGCACTATAATAGAAGAGGGA 59.930 37.037 0.00 0.00 0.00 4.20
3183 4265 7.596995 CGAAAAGCACTATAATAGAAGAGGGAG 59.403 40.741 0.00 0.00 0.00 4.30
3184 4266 7.922699 AAAGCACTATAATAGAAGAGGGAGT 57.077 36.000 0.00 0.00 0.00 3.85
3185 4267 9.435570 AAAAGCACTATAATAGAAGAGGGAGTA 57.564 33.333 0.00 0.00 0.00 2.59
3186 4268 9.435570 AAAGCACTATAATAGAAGAGGGAGTAA 57.564 33.333 0.00 0.00 0.00 2.24
3187 4269 9.608718 AAGCACTATAATAGAAGAGGGAGTAAT 57.391 33.333 0.00 0.00 0.00 1.89
3194 4276 9.830186 ATAATAGAAGAGGGAGTAATAAGAGCA 57.170 33.333 0.00 0.00 0.00 4.26
3195 4277 7.775053 ATAGAAGAGGGAGTAATAAGAGCAG 57.225 40.000 0.00 0.00 0.00 4.24
3196 4278 4.898861 AGAAGAGGGAGTAATAAGAGCAGG 59.101 45.833 0.00 0.00 0.00 4.85
3197 4279 4.544564 AGAGGGAGTAATAAGAGCAGGA 57.455 45.455 0.00 0.00 0.00 3.86
3198 4280 4.884961 AGAGGGAGTAATAAGAGCAGGAA 58.115 43.478 0.00 0.00 0.00 3.36
3199 4281 4.651962 AGAGGGAGTAATAAGAGCAGGAAC 59.348 45.833 0.00 0.00 0.00 3.62
3200 4282 4.362677 AGGGAGTAATAAGAGCAGGAACA 58.637 43.478 0.00 0.00 0.00 3.18
3201 4283 4.971924 AGGGAGTAATAAGAGCAGGAACAT 59.028 41.667 0.00 0.00 0.00 2.71
3202 4284 6.143915 AGGGAGTAATAAGAGCAGGAACATA 58.856 40.000 0.00 0.00 0.00 2.29
3203 4285 6.615726 AGGGAGTAATAAGAGCAGGAACATAA 59.384 38.462 0.00 0.00 0.00 1.90
3204 4286 7.293535 AGGGAGTAATAAGAGCAGGAACATAAT 59.706 37.037 0.00 0.00 0.00 1.28
3205 4287 8.594550 GGGAGTAATAAGAGCAGGAACATAATA 58.405 37.037 0.00 0.00 0.00 0.98
3206 4288 9.998106 GGAGTAATAAGAGCAGGAACATAATAA 57.002 33.333 0.00 0.00 0.00 1.40
3215 4297 9.920946 AGAGCAGGAACATAATAAATTAAAGGA 57.079 29.630 0.00 0.00 0.00 3.36
3217 4299 9.920946 AGCAGGAACATAATAAATTAAAGGAGA 57.079 29.630 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.940209 ACGGTCCTGTCAATTTACGTA 57.060 42.857 0.00 0.00 0.00 3.57
34 35 2.825861 ACGGTCCTGTCAATTTACGT 57.174 45.000 0.00 0.00 0.00 3.57
35 36 4.628333 ACATAACGGTCCTGTCAATTTACG 59.372 41.667 0.00 0.00 0.00 3.18
36 37 6.490566 AACATAACGGTCCTGTCAATTTAC 57.509 37.500 0.00 0.00 0.00 2.01
189 202 3.267900 CGACCTTATCGCCATCGTT 57.732 52.632 0.00 0.00 45.52 3.85
206 219 1.080501 CGATCGATCCATCACCCCG 60.081 63.158 19.51 1.36 0.00 5.73
212 225 2.748605 GGGCATATCGATCGATCCATC 58.251 52.381 32.50 19.82 36.17 3.51
213 226 1.067669 CGGGCATATCGATCGATCCAT 59.932 52.381 32.50 19.37 36.17 3.41
214 227 0.455815 CGGGCATATCGATCGATCCA 59.544 55.000 32.50 17.91 36.17 3.41
215 228 0.249073 CCGGGCATATCGATCGATCC 60.249 60.000 32.50 25.79 36.17 3.36
253 267 3.657537 GCACGTAGCATGTGTTGAC 57.342 52.632 5.30 0.00 44.79 3.18
285 352 5.883661 TGCATGGTTTAGACTAGTACGTAC 58.116 41.667 18.10 18.10 0.00 3.67
289 356 5.006746 GTGCATGCATGGTTTAGACTAGTAC 59.993 44.000 25.64 6.53 0.00 2.73
290 357 5.116180 GTGCATGCATGGTTTAGACTAGTA 58.884 41.667 25.64 0.00 0.00 1.82
291 358 3.941483 GTGCATGCATGGTTTAGACTAGT 59.059 43.478 25.64 0.00 0.00 2.57
292 359 3.001634 CGTGCATGCATGGTTTAGACTAG 59.998 47.826 28.79 0.00 0.00 2.57
295 362 1.202177 CCGTGCATGCATGGTTTAGAC 60.202 52.381 39.68 17.85 45.48 2.59
327 431 9.167311 CTGGATCAGTTAAATTAGCAAGTAAGT 57.833 33.333 0.00 0.00 0.00 2.24
328 432 9.383519 TCTGGATCAGTTAAATTAGCAAGTAAG 57.616 33.333 0.00 0.00 32.61 2.34
329 433 9.383519 CTCTGGATCAGTTAAATTAGCAAGTAA 57.616 33.333 0.00 0.00 32.61 2.24
330 434 8.758829 TCTCTGGATCAGTTAAATTAGCAAGTA 58.241 33.333 0.00 0.00 32.61 2.24
331 435 7.624549 TCTCTGGATCAGTTAAATTAGCAAGT 58.375 34.615 0.00 0.00 32.61 3.16
332 436 7.226325 CCTCTCTGGATCAGTTAAATTAGCAAG 59.774 40.741 0.00 0.00 38.35 4.01
333 437 7.050377 CCTCTCTGGATCAGTTAAATTAGCAA 58.950 38.462 0.00 0.00 38.35 3.91
334 438 6.408548 CCCTCTCTGGATCAGTTAAATTAGCA 60.409 42.308 0.00 0.00 38.35 3.49
358 462 2.100252 CCATCACACAATCATTGAGCCC 59.900 50.000 3.79 0.00 0.00 5.19
447 584 2.672996 CACAAGGAACAGGGCCCG 60.673 66.667 18.44 14.39 0.00 6.13
465 602 1.067084 TGCATTGCAACCCAACACG 59.933 52.632 9.33 0.00 34.76 4.49
466 603 0.879839 GGTGCATTGCAACCCAACAC 60.880 55.000 15.97 5.96 40.86 3.32
467 604 1.445095 GGTGCATTGCAACCCAACA 59.555 52.632 15.97 0.00 40.86 3.33
468 605 4.359475 GGTGCATTGCAACCCAAC 57.641 55.556 15.97 0.04 40.86 3.77
477 614 2.687700 AGAGTGAGCTAGGTGCATTG 57.312 50.000 0.00 0.00 45.94 2.82
478 615 2.432510 GGTAGAGTGAGCTAGGTGCATT 59.567 50.000 0.00 0.00 45.94 3.56
479 616 2.035632 GGTAGAGTGAGCTAGGTGCAT 58.964 52.381 0.00 0.00 45.94 3.96
557 704 0.252193 AGAGGAGTGAGGAAGCAGCT 60.252 55.000 0.00 0.00 0.00 4.24
663 814 0.459237 GTGAGGTGAGAGGTGATGCG 60.459 60.000 0.00 0.00 0.00 4.73
689 843 4.021544 CCAAGCTAGCTAAGACTAGGGATG 60.022 50.000 19.70 7.66 40.08 3.51
691 845 3.567397 CCAAGCTAGCTAAGACTAGGGA 58.433 50.000 19.70 0.00 40.08 4.20
693 847 2.962421 AGCCAAGCTAGCTAAGACTAGG 59.038 50.000 19.70 12.01 40.08 3.02
695 849 3.430929 GCAAGCCAAGCTAGCTAAGACTA 60.431 47.826 19.70 0.00 40.49 2.59
696 850 2.679349 GCAAGCCAAGCTAGCTAAGACT 60.679 50.000 19.70 8.91 40.49 3.24
697 851 1.668237 GCAAGCCAAGCTAGCTAAGAC 59.332 52.381 19.70 6.48 40.49 3.01
698 852 1.556911 AGCAAGCCAAGCTAGCTAAGA 59.443 47.619 19.70 0.00 40.49 2.10
699 853 1.939255 GAGCAAGCCAAGCTAGCTAAG 59.061 52.381 19.70 13.54 43.58 2.18
700 854 1.556911 AGAGCAAGCCAAGCTAGCTAA 59.443 47.619 19.70 0.00 43.58 3.09
790 948 4.468829 AGCTAGGCTTGGCTCTGA 57.531 55.556 0.00 0.00 36.20 3.27
879 1043 2.997315 AGCGAGCTGGTAGTGGCA 60.997 61.111 0.00 0.00 0.00 4.92
880 1044 2.510238 CAGCGAGCTGGTAGTGGC 60.510 66.667 16.69 0.00 40.17 5.01
889 1053 4.436998 GTGGCGGTACAGCGAGCT 62.437 66.667 11.93 0.00 38.18 4.09
897 1061 3.388703 TAATGGCGGGTGGCGGTAC 62.389 63.158 0.00 0.00 44.92 3.34
898 1062 3.082055 TAATGGCGGGTGGCGGTA 61.082 61.111 0.00 0.00 44.92 4.02
899 1063 4.789123 GTAATGGCGGGTGGCGGT 62.789 66.667 0.00 0.00 44.92 5.68
900 1064 4.483243 AGTAATGGCGGGTGGCGG 62.483 66.667 0.00 0.00 44.92 6.13
901 1065 3.202001 CAGTAATGGCGGGTGGCG 61.202 66.667 0.00 0.00 44.92 5.69
902 1066 3.518068 GCAGTAATGGCGGGTGGC 61.518 66.667 0.00 0.00 42.51 5.01
1098 1270 2.752807 GGAGTGGTGGTGGTGGTGT 61.753 63.158 0.00 0.00 0.00 4.16
1405 1601 2.202388 TCGACCACGCGATCGAAC 60.202 61.111 24.56 0.10 43.97 3.95
1428 1645 6.038714 AGTTTCTCACACATTTCTTCAGGAAC 59.961 38.462 0.00 0.00 33.13 3.62
1454 1671 4.455877 CCAGTTCTTCCGTGCTTAATTCTT 59.544 41.667 0.00 0.00 0.00 2.52
1466 1683 1.550524 TCTCATCACCCAGTTCTTCCG 59.449 52.381 0.00 0.00 0.00 4.30
1467 1684 3.198635 TCATCTCATCACCCAGTTCTTCC 59.801 47.826 0.00 0.00 0.00 3.46
1469 1686 5.045359 TCAATCATCTCATCACCCAGTTCTT 60.045 40.000 0.00 0.00 0.00 2.52
1471 1688 4.774124 TCAATCATCTCATCACCCAGTTC 58.226 43.478 0.00 0.00 0.00 3.01
1472 1689 4.472470 TCTCAATCATCTCATCACCCAGTT 59.528 41.667 0.00 0.00 0.00 3.16
1474 1691 4.684484 TCTCAATCATCTCATCACCCAG 57.316 45.455 0.00 0.00 0.00 4.45
1475 1692 4.906060 AGATCTCAATCATCTCATCACCCA 59.094 41.667 0.00 0.00 34.07 4.51
1477 1694 6.071221 AGCTAGATCTCAATCATCTCATCACC 60.071 42.308 0.00 0.00 34.07 4.02
1479 1696 7.148035 GCTAGCTAGATCTCAATCATCTCATCA 60.148 40.741 25.15 0.00 34.07 3.07
1480 1697 7.198390 GCTAGCTAGATCTCAATCATCTCATC 58.802 42.308 25.15 0.00 34.07 2.92
1510 1734 5.106555 ACACATCAAGCATGTAAGTAAGTGC 60.107 40.000 0.00 0.00 44.60 4.40
1521 1755 1.733912 AGCACGTACACATCAAGCATG 59.266 47.619 0.00 0.00 38.64 4.06
1809 2050 2.482333 CGGCTTCGAGTCGGAGGAT 61.482 63.158 22.19 0.00 40.10 3.24
1848 2116 3.181967 CTCTTCTTGACGCCGCCG 61.182 66.667 0.00 0.00 41.14 6.46
1849 2117 3.491652 GCTCTTCTTGACGCCGCC 61.492 66.667 0.00 0.00 0.00 6.13
1850 2118 3.843240 CGCTCTTCTTGACGCCGC 61.843 66.667 0.00 0.00 0.00 6.53
1851 2119 3.181967 CCGCTCTTCTTGACGCCG 61.182 66.667 0.00 0.00 0.00 6.46
2245 2519 1.007964 CTAGGCTGCTCGATCCGTG 60.008 63.158 0.00 0.00 0.00 4.94
2246 2520 2.851071 GCTAGGCTGCTCGATCCGT 61.851 63.158 0.00 0.00 0.00 4.69
2253 2527 0.243636 GCTAGCTAGCTAGGCTGCTC 59.756 60.000 39.60 24.67 45.62 4.26
2271 2545 1.012486 GTCCATGCTTGCTTGCTTGC 61.012 55.000 10.31 0.00 36.96 4.01
2272 2546 0.389426 GGTCCATGCTTGCTTGCTTG 60.389 55.000 9.28 9.28 37.70 4.01
2285 2562 2.731571 CCATGGTCGGTCGGTCCAT 61.732 63.158 2.57 12.29 41.88 3.41
2290 2575 2.108976 CCATCCATGGTCGGTCGG 59.891 66.667 12.58 0.71 43.05 4.79
2370 2668 3.020984 ACACGGAAGAAAGCAAGGAAAA 58.979 40.909 0.00 0.00 0.00 2.29
2371 2669 2.650322 ACACGGAAGAAAGCAAGGAAA 58.350 42.857 0.00 0.00 0.00 3.13
2502 2809 7.718314 AGCTCACATAGATAATGCAAAAGATCA 59.282 33.333 0.00 0.00 39.39 2.92
2503 2810 8.016229 CAGCTCACATAGATAATGCAAAAGATC 58.984 37.037 0.00 0.00 39.39 2.75
2516 2823 1.208052 ACGCAACCAGCTCACATAGAT 59.792 47.619 0.00 0.00 42.61 1.98
2517 2824 0.608130 ACGCAACCAGCTCACATAGA 59.392 50.000 0.00 0.00 42.61 1.98
2518 2825 0.723414 CACGCAACCAGCTCACATAG 59.277 55.000 0.00 0.00 42.61 2.23
2519 2826 0.320050 TCACGCAACCAGCTCACATA 59.680 50.000 0.00 0.00 42.61 2.29
2530 2837 0.111089 CAGAACGAAGCTCACGCAAC 60.111 55.000 12.08 5.43 39.10 4.17
2651 3707 3.184683 GCTCGCTCGCTTGACCTG 61.185 66.667 0.00 0.00 0.00 4.00
2690 3758 2.830321 TCTCCTTCGTCCCTTACCTTTC 59.170 50.000 0.00 0.00 0.00 2.62
2691 3759 2.832733 CTCTCCTTCGTCCCTTACCTTT 59.167 50.000 0.00 0.00 0.00 3.11
2692 3760 2.458620 CTCTCCTTCGTCCCTTACCTT 58.541 52.381 0.00 0.00 0.00 3.50
2699 3767 2.579738 GCACCTCTCCTTCGTCCC 59.420 66.667 0.00 0.00 0.00 4.46
2706 3774 2.601666 TGCTGACGCACCTCTCCT 60.602 61.111 0.00 0.00 42.25 3.69
2744 3821 0.936297 GCCTGACAAAAGTTGCAGCG 60.936 55.000 0.00 0.00 35.16 5.18
2801 3883 2.262915 CGTGAGGTGAGGTGAGGC 59.737 66.667 0.00 0.00 0.00 4.70
2827 3909 1.625818 GGAAGCAAGTGAAGGAGGAGA 59.374 52.381 0.00 0.00 0.00 3.71
2831 3913 1.001406 AGTCGGAAGCAAGTGAAGGAG 59.999 52.381 0.00 0.00 0.00 3.69
2836 3918 2.515854 AGTAGAGTCGGAAGCAAGTGA 58.484 47.619 0.00 0.00 0.00 3.41
2848 3930 7.562454 AGTGATAGTAGAAGCAAGTAGAGTC 57.438 40.000 0.00 0.00 0.00 3.36
2852 3934 8.440059 CGATCTAGTGATAGTAGAAGCAAGTAG 58.560 40.741 0.00 0.00 34.15 2.57
2853 3935 7.388224 CCGATCTAGTGATAGTAGAAGCAAGTA 59.612 40.741 0.00 0.00 34.15 2.24
2854 3936 6.205853 CCGATCTAGTGATAGTAGAAGCAAGT 59.794 42.308 0.00 0.00 34.15 3.16
2855 3937 6.428465 TCCGATCTAGTGATAGTAGAAGCAAG 59.572 42.308 0.00 0.00 34.15 4.01
2856 3938 6.296803 TCCGATCTAGTGATAGTAGAAGCAA 58.703 40.000 0.00 0.00 34.15 3.91
2857 3939 5.866207 TCCGATCTAGTGATAGTAGAAGCA 58.134 41.667 0.00 0.00 34.15 3.91
2858 3940 6.804770 TTCCGATCTAGTGATAGTAGAAGC 57.195 41.667 0.00 0.00 34.15 3.86
2859 3941 7.675403 GCGATTCCGATCTAGTGATAGTAGAAG 60.675 44.444 0.00 0.00 38.22 2.85
2860 3942 6.092396 GCGATTCCGATCTAGTGATAGTAGAA 59.908 42.308 0.00 0.00 38.22 2.10
2861 3943 5.581479 GCGATTCCGATCTAGTGATAGTAGA 59.419 44.000 0.00 0.00 38.22 2.59
2862 3944 5.501092 CGCGATTCCGATCTAGTGATAGTAG 60.501 48.000 0.00 0.00 38.22 2.57
2863 3945 4.329256 CGCGATTCCGATCTAGTGATAGTA 59.671 45.833 0.00 0.00 38.22 1.82
2864 3946 3.125487 CGCGATTCCGATCTAGTGATAGT 59.875 47.826 0.00 0.00 38.22 2.12
2865 3947 3.675481 CGCGATTCCGATCTAGTGATAG 58.325 50.000 0.00 0.00 38.22 2.08
2866 3948 2.159558 GCGCGATTCCGATCTAGTGATA 60.160 50.000 12.10 0.00 38.22 2.15
2867 3949 1.401670 GCGCGATTCCGATCTAGTGAT 60.402 52.381 12.10 0.00 38.22 3.06
2868 3950 0.040336 GCGCGATTCCGATCTAGTGA 60.040 55.000 12.10 0.00 38.22 3.41
2869 3951 1.004277 GGCGCGATTCCGATCTAGTG 61.004 60.000 12.10 0.00 38.22 2.74
2870 3952 1.286260 GGCGCGATTCCGATCTAGT 59.714 57.895 12.10 0.00 38.22 2.57
2871 3953 0.318699 TTGGCGCGATTCCGATCTAG 60.319 55.000 12.10 0.00 38.22 2.43
2872 3954 0.318699 CTTGGCGCGATTCCGATCTA 60.319 55.000 12.10 0.00 38.22 1.98
2873 3955 1.592669 CTTGGCGCGATTCCGATCT 60.593 57.895 12.10 0.00 38.22 2.75
2874 3956 2.598632 CCTTGGCGCGATTCCGATC 61.599 63.158 12.10 0.00 38.22 3.69
2875 3957 2.588877 CCTTGGCGCGATTCCGAT 60.589 61.111 12.10 0.00 38.22 4.18
2896 3978 4.717313 GTTGGGACCGGCACCCTC 62.717 72.222 29.42 20.89 46.82 4.30
2898 3980 3.879180 AATGTTGGGACCGGCACCC 62.879 63.158 25.07 25.07 46.87 4.61
2899 3981 1.906333 AAATGTTGGGACCGGCACC 60.906 57.895 0.00 4.30 0.00 5.01
2900 3982 1.175983 TCAAATGTTGGGACCGGCAC 61.176 55.000 0.00 0.00 0.00 5.01
2901 3983 0.251564 ATCAAATGTTGGGACCGGCA 60.252 50.000 0.00 0.00 0.00 5.69
2902 3984 0.455815 GATCAAATGTTGGGACCGGC 59.544 55.000 0.00 0.00 0.00 6.13
2903 3985 1.832883 TGATCAAATGTTGGGACCGG 58.167 50.000 0.00 0.00 0.00 5.28
2904 3986 2.415893 GCTTGATCAAATGTTGGGACCG 60.416 50.000 9.88 0.00 0.00 4.79
2905 3987 2.562298 TGCTTGATCAAATGTTGGGACC 59.438 45.455 9.88 0.00 0.00 4.46
2906 3988 3.367703 CCTGCTTGATCAAATGTTGGGAC 60.368 47.826 9.88 0.00 0.00 4.46
2907 3989 2.827322 CCTGCTTGATCAAATGTTGGGA 59.173 45.455 9.88 0.00 0.00 4.37
2908 3990 2.564062 ACCTGCTTGATCAAATGTTGGG 59.436 45.455 9.88 8.40 0.00 4.12
2909 3991 3.947910 ACCTGCTTGATCAAATGTTGG 57.052 42.857 9.88 9.70 0.00 3.77
2910 3992 6.880822 CATTACCTGCTTGATCAAATGTTG 57.119 37.500 9.88 0.00 0.00 3.33
2925 4007 5.854010 TCCTACTGACTTAGCATTACCTG 57.146 43.478 0.00 0.00 0.00 4.00
2926 4008 6.042208 GGATTCCTACTGACTTAGCATTACCT 59.958 42.308 0.00 0.00 0.00 3.08
2927 4009 6.183360 TGGATTCCTACTGACTTAGCATTACC 60.183 42.308 3.95 0.00 0.00 2.85
2928 4010 6.817184 TGGATTCCTACTGACTTAGCATTAC 58.183 40.000 3.95 0.00 0.00 1.89
2929 4011 6.839134 TCTGGATTCCTACTGACTTAGCATTA 59.161 38.462 3.95 0.00 0.00 1.90
2930 4012 5.663106 TCTGGATTCCTACTGACTTAGCATT 59.337 40.000 3.95 0.00 0.00 3.56
2931 4013 5.211973 TCTGGATTCCTACTGACTTAGCAT 58.788 41.667 3.95 0.00 0.00 3.79
2932 4014 4.610333 TCTGGATTCCTACTGACTTAGCA 58.390 43.478 3.95 0.00 0.00 3.49
2933 4015 5.799827 ATCTGGATTCCTACTGACTTAGC 57.200 43.478 3.95 0.00 0.00 3.09
2934 4016 9.535878 GTTAAATCTGGATTCCTACTGACTTAG 57.464 37.037 3.95 0.00 0.00 2.18
2935 4017 9.042450 TGTTAAATCTGGATTCCTACTGACTTA 57.958 33.333 3.95 0.00 0.00 2.24
2936 4018 7.918076 TGTTAAATCTGGATTCCTACTGACTT 58.082 34.615 3.95 0.00 0.00 3.01
2937 4019 7.496346 TGTTAAATCTGGATTCCTACTGACT 57.504 36.000 3.95 0.00 0.00 3.41
2940 4022 8.725148 GCATATGTTAAATCTGGATTCCTACTG 58.275 37.037 4.29 0.00 0.00 2.74
2941 4023 8.439971 TGCATATGTTAAATCTGGATTCCTACT 58.560 33.333 4.29 0.00 0.00 2.57
2942 4024 8.621532 TGCATATGTTAAATCTGGATTCCTAC 57.378 34.615 4.29 0.00 0.00 3.18
2943 4025 9.812347 AATGCATATGTTAAATCTGGATTCCTA 57.188 29.630 0.00 0.00 0.00 2.94
2944 4026 8.716674 AATGCATATGTTAAATCTGGATTCCT 57.283 30.769 0.00 0.00 0.00 3.36
2945 4027 8.579006 TGAATGCATATGTTAAATCTGGATTCC 58.421 33.333 0.00 0.00 41.29 3.01
2949 4031 9.571816 TGTATGAATGCATATGTTAAATCTGGA 57.428 29.630 0.00 0.00 39.09 3.86
2994 4076 9.941664 CGCTTCTATCACATTTGAATATTTCTT 57.058 29.630 0.00 0.00 34.61 2.52
2995 4077 9.330063 TCGCTTCTATCACATTTGAATATTTCT 57.670 29.630 0.00 0.00 34.61 2.52
2996 4078 9.591404 CTCGCTTCTATCACATTTGAATATTTC 57.409 33.333 0.00 0.00 34.61 2.17
2997 4079 9.330063 TCTCGCTTCTATCACATTTGAATATTT 57.670 29.630 0.00 0.00 34.61 1.40
2998 4080 8.768955 GTCTCGCTTCTATCACATTTGAATATT 58.231 33.333 0.00 0.00 34.61 1.28
2999 4081 7.928167 TGTCTCGCTTCTATCACATTTGAATAT 59.072 33.333 0.00 0.00 34.61 1.28
3000 4082 7.264947 TGTCTCGCTTCTATCACATTTGAATA 58.735 34.615 0.00 0.00 34.61 1.75
3001 4083 6.108687 TGTCTCGCTTCTATCACATTTGAAT 58.891 36.000 0.00 0.00 34.61 2.57
3002 4084 5.478407 TGTCTCGCTTCTATCACATTTGAA 58.522 37.500 0.00 0.00 34.61 2.69
3003 4085 5.072040 TGTCTCGCTTCTATCACATTTGA 57.928 39.130 0.00 0.00 35.73 2.69
3004 4086 5.980698 ATGTCTCGCTTCTATCACATTTG 57.019 39.130 0.00 0.00 0.00 2.32
3005 4087 6.699204 CACTATGTCTCGCTTCTATCACATTT 59.301 38.462 0.00 0.00 0.00 2.32
3006 4088 6.212235 CACTATGTCTCGCTTCTATCACATT 58.788 40.000 0.00 0.00 0.00 2.71
3007 4089 5.278709 CCACTATGTCTCGCTTCTATCACAT 60.279 44.000 0.00 0.00 0.00 3.21
3008 4090 4.036852 CCACTATGTCTCGCTTCTATCACA 59.963 45.833 0.00 0.00 0.00 3.58
3009 4091 4.036971 ACCACTATGTCTCGCTTCTATCAC 59.963 45.833 0.00 0.00 0.00 3.06
3010 4092 4.036852 CACCACTATGTCTCGCTTCTATCA 59.963 45.833 0.00 0.00 0.00 2.15
3011 4093 4.541779 CACCACTATGTCTCGCTTCTATC 58.458 47.826 0.00 0.00 0.00 2.08
3012 4094 3.243569 GCACCACTATGTCTCGCTTCTAT 60.244 47.826 0.00 0.00 0.00 1.98
3013 4095 2.099263 GCACCACTATGTCTCGCTTCTA 59.901 50.000 0.00 0.00 0.00 2.10
3014 4096 1.134965 GCACCACTATGTCTCGCTTCT 60.135 52.381 0.00 0.00 0.00 2.85
3015 4097 1.134965 AGCACCACTATGTCTCGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
3016 4098 0.898320 AGCACCACTATGTCTCGCTT 59.102 50.000 0.00 0.00 0.00 4.68
3017 4099 0.457851 GAGCACCACTATGTCTCGCT 59.542 55.000 0.00 0.00 0.00 4.93
3018 4100 0.173481 TGAGCACCACTATGTCTCGC 59.827 55.000 0.00 0.00 0.00 5.03
3019 4101 2.654749 TTGAGCACCACTATGTCTCG 57.345 50.000 0.00 0.00 0.00 4.04
3020 4102 5.925397 CAGATATTGAGCACCACTATGTCTC 59.075 44.000 0.00 0.00 0.00 3.36
3021 4103 5.741383 GCAGATATTGAGCACCACTATGTCT 60.741 44.000 0.00 0.00 0.00 3.41
3022 4104 4.450419 GCAGATATTGAGCACCACTATGTC 59.550 45.833 0.00 0.00 0.00 3.06
3023 4105 4.141642 TGCAGATATTGAGCACCACTATGT 60.142 41.667 0.00 0.00 32.55 2.29
3024 4106 4.383173 TGCAGATATTGAGCACCACTATG 58.617 43.478 0.00 0.00 32.55 2.23
3025 4107 4.694760 TGCAGATATTGAGCACCACTAT 57.305 40.909 0.00 0.00 32.55 2.12
3026 4108 4.101430 TCATGCAGATATTGAGCACCACTA 59.899 41.667 0.00 0.00 41.60 2.74
3027 4109 3.118149 TCATGCAGATATTGAGCACCACT 60.118 43.478 0.00 0.00 41.60 4.00
3028 4110 3.003068 GTCATGCAGATATTGAGCACCAC 59.997 47.826 0.00 0.00 41.60 4.16
3029 4111 3.208594 GTCATGCAGATATTGAGCACCA 58.791 45.455 0.00 0.00 41.60 4.17
3030 4112 3.003068 GTGTCATGCAGATATTGAGCACC 59.997 47.826 0.00 0.00 41.60 5.01
3031 4113 3.875727 AGTGTCATGCAGATATTGAGCAC 59.124 43.478 0.00 2.66 41.60 4.40
3032 4114 4.146745 AGTGTCATGCAGATATTGAGCA 57.853 40.909 0.00 0.00 43.14 4.26
3033 4115 7.816513 TCTTATAGTGTCATGCAGATATTGAGC 59.183 37.037 0.00 0.00 0.00 4.26
3034 4116 9.138062 GTCTTATAGTGTCATGCAGATATTGAG 57.862 37.037 0.00 0.00 0.00 3.02
3035 4117 8.641541 TGTCTTATAGTGTCATGCAGATATTGA 58.358 33.333 0.00 0.00 0.00 2.57
3036 4118 8.822652 TGTCTTATAGTGTCATGCAGATATTG 57.177 34.615 0.00 0.00 0.00 1.90
3037 4119 8.864087 TCTGTCTTATAGTGTCATGCAGATATT 58.136 33.333 0.00 0.00 0.00 1.28
3038 4120 8.414629 TCTGTCTTATAGTGTCATGCAGATAT 57.585 34.615 0.00 0.00 0.00 1.63
3039 4121 7.823745 TCTGTCTTATAGTGTCATGCAGATA 57.176 36.000 0.00 0.00 0.00 1.98
3040 4122 6.721704 TCTGTCTTATAGTGTCATGCAGAT 57.278 37.500 0.00 0.00 0.00 2.90
3041 4123 6.530019 TTCTGTCTTATAGTGTCATGCAGA 57.470 37.500 0.00 0.00 0.00 4.26
3042 4124 6.982724 TGATTCTGTCTTATAGTGTCATGCAG 59.017 38.462 0.00 0.00 0.00 4.41
3043 4125 6.877236 TGATTCTGTCTTATAGTGTCATGCA 58.123 36.000 0.00 0.00 0.00 3.96
3044 4126 7.776933 TTGATTCTGTCTTATAGTGTCATGC 57.223 36.000 0.00 0.00 0.00 4.06
3047 4129 9.942850 TGAAATTGATTCTGTCTTATAGTGTCA 57.057 29.630 0.00 0.00 38.92 3.58
3049 4131 9.950496 ACTGAAATTGATTCTGTCTTATAGTGT 57.050 29.630 0.00 0.00 44.14 3.55
3051 4133 8.887717 GCACTGAAATTGATTCTGTCTTATAGT 58.112 33.333 0.00 0.00 45.23 2.12
3052 4134 8.060679 CGCACTGAAATTGATTCTGTCTTATAG 58.939 37.037 0.00 0.00 45.23 1.31
3053 4135 7.549134 ACGCACTGAAATTGATTCTGTCTTATA 59.451 33.333 0.00 0.00 45.23 0.98
3054 4136 6.372659 ACGCACTGAAATTGATTCTGTCTTAT 59.627 34.615 0.00 0.00 45.23 1.73
3055 4137 5.700832 ACGCACTGAAATTGATTCTGTCTTA 59.299 36.000 0.00 0.00 45.23 2.10
3056 4138 4.516698 ACGCACTGAAATTGATTCTGTCTT 59.483 37.500 0.00 0.00 45.23 3.01
3057 4139 4.067896 ACGCACTGAAATTGATTCTGTCT 58.932 39.130 0.00 0.00 45.23 3.41
3058 4140 4.410492 ACGCACTGAAATTGATTCTGTC 57.590 40.909 0.00 0.00 45.23 3.51
3060 4142 4.786507 TGAACGCACTGAAATTGATTCTG 58.213 39.130 0.00 0.00 41.37 3.02
3061 4143 5.633830 ATGAACGCACTGAAATTGATTCT 57.366 34.783 0.00 0.00 38.92 2.40
3062 4144 7.795431 TTTATGAACGCACTGAAATTGATTC 57.205 32.000 0.00 0.00 38.60 2.52
3063 4145 8.487176 GTTTTTATGAACGCACTGAAATTGATT 58.513 29.630 0.00 0.00 0.00 2.57
3064 4146 7.651304 TGTTTTTATGAACGCACTGAAATTGAT 59.349 29.630 0.00 0.00 32.18 2.57
3065 4147 6.975197 TGTTTTTATGAACGCACTGAAATTGA 59.025 30.769 0.00 0.00 32.18 2.57
3066 4148 7.056800 GTGTTTTTATGAACGCACTGAAATTG 58.943 34.615 0.00 0.00 39.27 2.32
3067 4149 6.754209 TGTGTTTTTATGAACGCACTGAAATT 59.246 30.769 0.35 0.00 43.02 1.82
3068 4150 6.269315 TGTGTTTTTATGAACGCACTGAAAT 58.731 32.000 0.35 0.00 43.02 2.17
3069 4151 5.641709 TGTGTTTTTATGAACGCACTGAAA 58.358 33.333 0.35 0.00 43.02 2.69
3070 4152 5.236655 TGTGTTTTTATGAACGCACTGAA 57.763 34.783 0.35 0.00 43.02 3.02
3071 4153 4.884458 TGTGTTTTTATGAACGCACTGA 57.116 36.364 0.35 0.00 43.02 3.41
3072 4154 5.940603 TTTGTGTTTTTATGAACGCACTG 57.059 34.783 3.75 0.00 46.27 3.66
3073 4155 6.326375 TCTTTTGTGTTTTTATGAACGCACT 58.674 32.000 3.75 0.00 46.27 4.40
3074 4156 6.561945 TCTTTTGTGTTTTTATGAACGCAC 57.438 33.333 3.75 1.75 46.27 5.34
3075 4157 7.114247 GCTATCTTTTGTGTTTTTATGAACGCA 59.886 33.333 0.35 0.35 45.32 5.24
3076 4158 7.410407 GGCTATCTTTTGTGTTTTTATGAACGC 60.410 37.037 0.00 0.00 39.76 4.84
3077 4159 7.201232 CGGCTATCTTTTGTGTTTTTATGAACG 60.201 37.037 0.00 0.00 32.18 3.95
3078 4160 7.410407 GCGGCTATCTTTTGTGTTTTTATGAAC 60.410 37.037 0.00 0.00 0.00 3.18
3079 4161 6.584563 GCGGCTATCTTTTGTGTTTTTATGAA 59.415 34.615 0.00 0.00 0.00 2.57
3080 4162 6.072175 AGCGGCTATCTTTTGTGTTTTTATGA 60.072 34.615 0.00 0.00 0.00 2.15
3081 4163 6.033831 CAGCGGCTATCTTTTGTGTTTTTATG 59.966 38.462 0.26 0.00 0.00 1.90
3082 4164 6.092748 CAGCGGCTATCTTTTGTGTTTTTAT 58.907 36.000 0.26 0.00 0.00 1.40
3083 4165 5.457140 CAGCGGCTATCTTTTGTGTTTTTA 58.543 37.500 0.26 0.00 0.00 1.52
3084 4166 4.298332 CAGCGGCTATCTTTTGTGTTTTT 58.702 39.130 0.26 0.00 0.00 1.94
3085 4167 3.305335 CCAGCGGCTATCTTTTGTGTTTT 60.305 43.478 0.26 0.00 0.00 2.43
3086 4168 2.228822 CCAGCGGCTATCTTTTGTGTTT 59.771 45.455 0.26 0.00 0.00 2.83
3087 4169 1.812571 CCAGCGGCTATCTTTTGTGTT 59.187 47.619 0.26 0.00 0.00 3.32
3088 4170 1.003118 TCCAGCGGCTATCTTTTGTGT 59.997 47.619 0.26 0.00 0.00 3.72
3089 4171 1.737838 TCCAGCGGCTATCTTTTGTG 58.262 50.000 0.26 0.00 0.00 3.33
3090 4172 2.717639 ATCCAGCGGCTATCTTTTGT 57.282 45.000 0.26 0.00 0.00 2.83
3091 4173 4.318332 TCATATCCAGCGGCTATCTTTTG 58.682 43.478 0.26 0.00 0.00 2.44
3092 4174 4.623932 TCATATCCAGCGGCTATCTTTT 57.376 40.909 0.26 0.00 0.00 2.27
3093 4175 4.040952 ACTTCATATCCAGCGGCTATCTTT 59.959 41.667 0.26 0.00 0.00 2.52
3094 4176 3.580458 ACTTCATATCCAGCGGCTATCTT 59.420 43.478 0.26 0.00 0.00 2.40
3095 4177 3.169099 ACTTCATATCCAGCGGCTATCT 58.831 45.455 0.26 0.00 0.00 1.98
3096 4178 3.601443 ACTTCATATCCAGCGGCTATC 57.399 47.619 0.26 0.00 0.00 2.08
3097 4179 4.067896 CAAACTTCATATCCAGCGGCTAT 58.932 43.478 0.26 0.00 0.00 2.97
3098 4180 3.133901 TCAAACTTCATATCCAGCGGCTA 59.866 43.478 0.26 0.00 0.00 3.93
3099 4181 2.092968 TCAAACTTCATATCCAGCGGCT 60.093 45.455 0.00 0.00 0.00 5.52
3100 4182 2.288666 TCAAACTTCATATCCAGCGGC 58.711 47.619 0.00 0.00 0.00 6.53
3101 4183 4.438744 GGTTTCAAACTTCATATCCAGCGG 60.439 45.833 0.00 0.00 0.00 5.52
3102 4184 4.155826 TGGTTTCAAACTTCATATCCAGCG 59.844 41.667 0.00 0.00 0.00 5.18
3103 4185 5.643379 TGGTTTCAAACTTCATATCCAGC 57.357 39.130 0.00 0.00 0.00 4.85
3104 4186 7.116805 GCTTTTGGTTTCAAACTTCATATCCAG 59.883 37.037 0.00 0.00 41.97 3.86
3105 4187 6.928492 GCTTTTGGTTTCAAACTTCATATCCA 59.072 34.615 0.00 0.00 41.97 3.41
3106 4188 6.089417 CGCTTTTGGTTTCAAACTTCATATCC 59.911 38.462 0.00 0.00 41.97 2.59
3107 4189 6.640907 ACGCTTTTGGTTTCAAACTTCATATC 59.359 34.615 0.00 0.00 41.97 1.63
3108 4190 6.512297 ACGCTTTTGGTTTCAAACTTCATAT 58.488 32.000 0.00 0.00 41.97 1.78
3109 4191 5.897050 ACGCTTTTGGTTTCAAACTTCATA 58.103 33.333 0.00 0.00 41.97 2.15
3110 4192 4.754322 ACGCTTTTGGTTTCAAACTTCAT 58.246 34.783 0.00 0.00 41.97 2.57
3111 4193 4.181309 ACGCTTTTGGTTTCAAACTTCA 57.819 36.364 0.00 0.00 41.97 3.02
3112 4194 4.206404 GCTACGCTTTTGGTTTCAAACTTC 59.794 41.667 0.00 0.00 41.97 3.01
3113 4195 4.109766 GCTACGCTTTTGGTTTCAAACTT 58.890 39.130 0.00 0.00 41.97 2.66
3114 4196 3.490249 GGCTACGCTTTTGGTTTCAAACT 60.490 43.478 0.00 0.00 41.97 2.66
3115 4197 2.792674 GGCTACGCTTTTGGTTTCAAAC 59.207 45.455 0.00 0.00 41.97 2.93
3116 4198 2.427453 TGGCTACGCTTTTGGTTTCAAA 59.573 40.909 0.00 0.00 40.71 2.69
3117 4199 2.025155 TGGCTACGCTTTTGGTTTCAA 58.975 42.857 0.00 0.00 0.00 2.69
3118 4200 1.335496 GTGGCTACGCTTTTGGTTTCA 59.665 47.619 0.00 0.00 0.00 2.69
3119 4201 1.607148 AGTGGCTACGCTTTTGGTTTC 59.393 47.619 0.00 0.00 32.39 2.78
3120 4202 1.607148 GAGTGGCTACGCTTTTGGTTT 59.393 47.619 0.00 0.00 37.63 3.27
3121 4203 1.235724 GAGTGGCTACGCTTTTGGTT 58.764 50.000 0.00 0.00 37.63 3.67
3122 4204 0.949105 CGAGTGGCTACGCTTTTGGT 60.949 55.000 2.02 0.00 37.63 3.67
3123 4205 0.669318 TCGAGTGGCTACGCTTTTGG 60.669 55.000 2.02 0.00 37.63 3.28
3124 4206 0.438830 GTCGAGTGGCTACGCTTTTG 59.561 55.000 2.02 0.00 37.63 2.44
3125 4207 0.032952 TGTCGAGTGGCTACGCTTTT 59.967 50.000 2.02 0.00 37.63 2.27
3126 4208 0.246635 ATGTCGAGTGGCTACGCTTT 59.753 50.000 2.02 0.00 37.63 3.51
3127 4209 0.458543 CATGTCGAGTGGCTACGCTT 60.459 55.000 2.02 0.00 37.63 4.68
3128 4210 1.139734 CATGTCGAGTGGCTACGCT 59.860 57.895 2.02 0.00 40.91 5.07
3129 4211 0.457853 TTCATGTCGAGTGGCTACGC 60.458 55.000 0.00 0.00 0.00 4.42
3130 4212 1.135373 ACTTCATGTCGAGTGGCTACG 60.135 52.381 0.00 0.00 0.00 3.51
3131 4213 2.656560 ACTTCATGTCGAGTGGCTAC 57.343 50.000 0.00 0.00 0.00 3.58
3132 4214 2.415491 CGAACTTCATGTCGAGTGGCTA 60.415 50.000 0.00 0.00 0.00 3.93
3133 4215 1.670087 CGAACTTCATGTCGAGTGGCT 60.670 52.381 0.00 0.00 0.00 4.75
3134 4216 0.716108 CGAACTTCATGTCGAGTGGC 59.284 55.000 0.00 0.00 0.00 5.01
3135 4217 2.347697 TCGAACTTCATGTCGAGTGG 57.652 50.000 2.32 0.00 0.00 4.00
3136 4218 3.478874 CGTATCGAACTTCATGTCGAGTG 59.521 47.826 11.19 0.00 38.03 3.51
3137 4219 3.373130 TCGTATCGAACTTCATGTCGAGT 59.627 43.478 11.19 3.45 38.03 4.18
3138 4220 3.936661 TCGTATCGAACTTCATGTCGAG 58.063 45.455 11.19 2.90 38.03 4.04
3139 4221 4.345271 TTCGTATCGAACTTCATGTCGA 57.655 40.909 8.38 8.38 41.05 4.20
3140 4222 5.430220 TTTTCGTATCGAACTTCATGTCG 57.570 39.130 4.08 0.00 45.64 4.35
3141 4223 5.163992 TGCTTTTCGTATCGAACTTCATGTC 60.164 40.000 4.08 0.00 45.64 3.06
3142 4224 4.688879 TGCTTTTCGTATCGAACTTCATGT 59.311 37.500 4.08 0.00 45.64 3.21
3143 4225 5.015733 GTGCTTTTCGTATCGAACTTCATG 58.984 41.667 4.08 0.00 45.64 3.07
3144 4226 4.929808 AGTGCTTTTCGTATCGAACTTCAT 59.070 37.500 4.08 0.00 45.64 2.57
3145 4227 4.304110 AGTGCTTTTCGTATCGAACTTCA 58.696 39.130 4.08 0.83 45.64 3.02
3146 4228 4.905412 AGTGCTTTTCGTATCGAACTTC 57.095 40.909 4.08 0.00 45.64 3.01
3147 4229 8.644318 ATTATAGTGCTTTTCGTATCGAACTT 57.356 30.769 4.08 0.00 45.64 2.66
3148 4230 9.395707 CTATTATAGTGCTTTTCGTATCGAACT 57.604 33.333 4.08 2.10 45.64 3.01
3149 4231 9.390795 TCTATTATAGTGCTTTTCGTATCGAAC 57.609 33.333 4.08 0.00 45.64 3.95
3150 4232 9.955208 TTCTATTATAGTGCTTTTCGTATCGAA 57.045 29.630 0.40 0.40 44.28 3.71
3151 4233 9.608617 CTTCTATTATAGTGCTTTTCGTATCGA 57.391 33.333 0.00 0.00 0.00 3.59
3152 4234 9.608617 TCTTCTATTATAGTGCTTTTCGTATCG 57.391 33.333 0.00 0.00 0.00 2.92
3154 4236 9.915629 CCTCTTCTATTATAGTGCTTTTCGTAT 57.084 33.333 0.00 0.00 0.00 3.06
3155 4237 8.358148 CCCTCTTCTATTATAGTGCTTTTCGTA 58.642 37.037 0.00 0.00 0.00 3.43
3156 4238 7.069578 TCCCTCTTCTATTATAGTGCTTTTCGT 59.930 37.037 0.00 0.00 0.00 3.85
3157 4239 7.434492 TCCCTCTTCTATTATAGTGCTTTTCG 58.566 38.462 0.00 0.00 0.00 3.46
3158 4240 8.425703 ACTCCCTCTTCTATTATAGTGCTTTTC 58.574 37.037 0.00 0.00 0.00 2.29
3159 4241 8.325477 ACTCCCTCTTCTATTATAGTGCTTTT 57.675 34.615 0.00 0.00 0.00 2.27
3160 4242 7.922699 ACTCCCTCTTCTATTATAGTGCTTT 57.077 36.000 0.00 0.00 0.00 3.51
3161 4243 9.608718 ATTACTCCCTCTTCTATTATAGTGCTT 57.391 33.333 0.00 0.00 0.00 3.91
3168 4250 9.830186 TGCTCTTATTACTCCCTCTTCTATTAT 57.170 33.333 0.00 0.00 0.00 1.28
3169 4251 9.303116 CTGCTCTTATTACTCCCTCTTCTATTA 57.697 37.037 0.00 0.00 0.00 0.98
3170 4252 7.234577 CCTGCTCTTATTACTCCCTCTTCTATT 59.765 40.741 0.00 0.00 0.00 1.73
3171 4253 6.723977 CCTGCTCTTATTACTCCCTCTTCTAT 59.276 42.308 0.00 0.00 0.00 1.98
3172 4254 6.071984 CCTGCTCTTATTACTCCCTCTTCTA 58.928 44.000 0.00 0.00 0.00 2.10
3173 4255 4.898861 CCTGCTCTTATTACTCCCTCTTCT 59.101 45.833 0.00 0.00 0.00 2.85
3174 4256 4.896482 TCCTGCTCTTATTACTCCCTCTTC 59.104 45.833 0.00 0.00 0.00 2.87
3175 4257 4.884961 TCCTGCTCTTATTACTCCCTCTT 58.115 43.478 0.00 0.00 0.00 2.85
3176 4258 4.544564 TCCTGCTCTTATTACTCCCTCT 57.455 45.455 0.00 0.00 0.00 3.69
3177 4259 4.406003 TGTTCCTGCTCTTATTACTCCCTC 59.594 45.833 0.00 0.00 0.00 4.30
3178 4260 4.362677 TGTTCCTGCTCTTATTACTCCCT 58.637 43.478 0.00 0.00 0.00 4.20
3179 4261 4.755266 TGTTCCTGCTCTTATTACTCCC 57.245 45.455 0.00 0.00 0.00 4.30
3180 4262 9.998106 TTATTATGTTCCTGCTCTTATTACTCC 57.002 33.333 0.00 0.00 0.00 3.85
3189 4271 9.920946 TCCTTTAATTTATTATGTTCCTGCTCT 57.079 29.630 0.00 0.00 0.00 4.09
3191 4273 9.920946 TCTCCTTTAATTTATTATGTTCCTGCT 57.079 29.630 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.