Multiple sequence alignment - TraesCS4D01G361100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G361100 chr4D 100.000 5895 0 0 1 5895 507889752 507895646 0.000000e+00 10887.0
1 TraesCS4D01G361100 chr4D 99.180 122 0 1 2426 2546 507892114 507892235 9.950000e-53 219.0
2 TraesCS4D01G361100 chr4D 99.180 122 0 1 2363 2484 507892177 507892297 9.950000e-53 219.0
3 TraesCS4D01G361100 chr4D 98.305 59 0 1 2489 2546 507892114 507892172 1.050000e-17 102.0
4 TraesCS4D01G361100 chr4D 98.305 59 0 1 2363 2421 507892240 507892297 1.050000e-17 102.0
5 TraesCS4D01G361100 chr5A 93.303 3061 144 23 2628 5662 693298678 693301703 0.000000e+00 4460.0
6 TraesCS4D01G361100 chr5A 90.205 1317 55 22 1205 2486 693297290 693298567 0.000000e+00 1650.0
7 TraesCS4D01G361100 chr5A 83.410 1091 65 47 157 1209 693296228 693297240 0.000000e+00 905.0
8 TraesCS4D01G361100 chr5A 88.929 280 15 9 2426 2701 693298446 693298713 1.220000e-86 331.0
9 TraesCS4D01G361100 chr5A 98.276 58 1 0 2489 2546 693298446 693298503 1.050000e-17 102.0
10 TraesCS4D01G361100 chr5A 96.721 61 1 1 2363 2423 693298508 693298567 3.760000e-17 100.0
11 TraesCS4D01G361100 chr4B 94.279 2185 96 6 2628 4794 655773367 655771194 0.000000e+00 3315.0
12 TraesCS4D01G361100 chr4B 86.448 1461 105 34 988 2366 655774997 655773548 0.000000e+00 1515.0
13 TraesCS4D01G361100 chr4B 85.328 961 57 32 4961 5886 655770997 655770086 0.000000e+00 917.0
14 TraesCS4D01G361100 chr4B 80.368 652 47 32 170 791 655775768 655775168 2.540000e-113 420.0
15 TraesCS4D01G361100 chr4B 94.783 115 6 0 2515 2629 655773548 655773434 4.690000e-41 180.0
16 TraesCS4D01G361100 chr4B 88.136 118 8 3 2489 2602 19042487 19042372 1.030000e-27 135.0
17 TraesCS4D01G361100 chr4B 95.294 85 4 0 4831 4915 655771190 655771106 1.030000e-27 135.0
18 TraesCS4D01G361100 chr4B 95.946 74 2 1 2628 2700 655773406 655773333 1.040000e-22 119.0
19 TraesCS4D01G361100 chr4B 84.884 86 6 3 2464 2543 22719534 22719618 4.900000e-11 80.5
20 TraesCS4D01G361100 chr4B 97.436 39 0 1 2663 2700 655773409 655773371 1.370000e-06 65.8
21 TraesCS4D01G361100 chrUn 92.784 97 5 2 2506 2602 359374242 359374336 7.970000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G361100 chr4D 507889752 507895646 5894 False 2305.80 10887 98.994000 1 5895 5 chr4D.!!$F1 5894
1 TraesCS4D01G361100 chr5A 693296228 693301703 5475 False 1258.00 4460 91.807333 157 5662 6 chr5A.!!$F1 5505
2 TraesCS4D01G361100 chr4B 655770086 655775768 5682 True 833.35 3315 91.235250 170 5886 8 chr4B.!!$R2 5716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.035534 AATGCAGCCATACGTCCACA 60.036 50.0 0.00 0.00 0.00 4.17 F
340 349 0.108041 GCATTGCAGGGGTCCAATTG 60.108 55.0 3.15 0.00 29.71 2.32 F
895 980 0.108615 TGGTTGGTTGGTTGTTTGCG 60.109 50.0 0.00 0.00 0.00 4.85 F
896 981 0.173708 GGTTGGTTGGTTGTTTGCGA 59.826 50.0 0.00 0.00 0.00 5.10 F
2014 2274 0.181114 ATGCAGAGCCGAATGCCTTA 59.819 50.0 0.00 0.00 41.85 2.69 F
2447 2737 0.599558 TGTGCCTGCAAGCTTGAATC 59.400 50.0 30.39 14.45 0.00 2.52 F
3452 3829 0.741221 GTGTGAGATTCTGTCGGGGC 60.741 60.0 0.00 0.00 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 2031 0.249120 TGGCATAGTCACTGAACCGG 59.751 55.000 0.00 0.00 0.00 5.28 R
2227 2515 1.136891 GGTTGGGCATGTATGGAAAGC 59.863 52.381 0.00 0.00 0.00 3.51 R
2457 2747 0.184692 TGGATGTTTCAGCACACCCA 59.815 50.000 0.00 0.00 0.00 4.51 R
2491 2781 0.599558 GATTCAAGCTTGCAGGCACA 59.400 50.000 23.85 2.75 34.17 4.57 R
3701 4078 0.175302 CCAATGCTCGACTCAGCTCT 59.825 55.000 0.00 0.00 40.39 4.09 R
3778 4155 0.179936 CTCTGGCCATCACTTCCCTC 59.820 60.000 5.51 0.00 0.00 4.30 R
5305 5770 0.108329 GCTGTACACCGTAGCATGGT 60.108 55.000 1.62 1.62 38.21 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.378531 TTCAATGCAGCCATACGTCC 58.621 50.000 0.00 0.00 0.00 4.79
20 21 0.251634 TCAATGCAGCCATACGTCCA 59.748 50.000 0.00 0.00 0.00 4.02
21 22 0.378257 CAATGCAGCCATACGTCCAC 59.622 55.000 0.00 0.00 0.00 4.02
22 23 0.035534 AATGCAGCCATACGTCCACA 60.036 50.000 0.00 0.00 0.00 4.17
23 24 0.462581 ATGCAGCCATACGTCCACAG 60.463 55.000 0.00 0.00 0.00 3.66
24 25 1.218047 GCAGCCATACGTCCACAGA 59.782 57.895 0.00 0.00 0.00 3.41
25 26 1.084370 GCAGCCATACGTCCACAGAC 61.084 60.000 0.00 0.00 39.83 3.51
26 27 0.246360 CAGCCATACGTCCACAGACA 59.754 55.000 0.00 0.00 43.73 3.41
27 28 0.532573 AGCCATACGTCCACAGACAG 59.467 55.000 0.00 0.00 43.73 3.51
28 29 0.530744 GCCATACGTCCACAGACAGA 59.469 55.000 0.00 0.00 43.73 3.41
29 30 1.736032 GCCATACGTCCACAGACAGAC 60.736 57.143 0.00 0.00 43.73 3.51
30 31 1.819288 CCATACGTCCACAGACAGACT 59.181 52.381 0.00 0.00 43.73 3.24
40 41 4.083862 GACAGACTGTCCCCGCCC 62.084 72.222 22.77 0.00 41.37 6.13
41 42 4.640690 ACAGACTGTCCCCGCCCT 62.641 66.667 1.07 0.00 0.00 5.19
42 43 4.087892 CAGACTGTCCCCGCCCTG 62.088 72.222 3.76 0.00 0.00 4.45
80 81 6.456795 GGCCAAGCCCAAGATATTATTATC 57.543 41.667 0.00 0.00 44.06 1.75
81 82 5.360999 GGCCAAGCCCAAGATATTATTATCC 59.639 44.000 0.00 0.00 44.06 2.59
82 83 5.360999 GCCAAGCCCAAGATATTATTATCCC 59.639 44.000 1.81 0.00 35.74 3.85
83 84 6.735556 CCAAGCCCAAGATATTATTATCCCT 58.264 40.000 1.81 0.00 35.74 4.20
84 85 7.184862 CCAAGCCCAAGATATTATTATCCCTT 58.815 38.462 1.81 0.00 35.74 3.95
85 86 7.123247 CCAAGCCCAAGATATTATTATCCCTTG 59.877 40.741 0.00 0.00 35.74 3.61
86 87 7.348680 AGCCCAAGATATTATTATCCCTTGT 57.651 36.000 0.00 0.00 35.74 3.16
87 88 7.769652 AGCCCAAGATATTATTATCCCTTGTT 58.230 34.615 0.00 0.00 35.74 2.83
88 89 7.671398 AGCCCAAGATATTATTATCCCTTGTTG 59.329 37.037 0.00 0.86 35.74 3.33
89 90 7.669722 GCCCAAGATATTATTATCCCTTGTTGA 59.330 37.037 0.00 0.00 35.74 3.18
90 91 9.759473 CCCAAGATATTATTATCCCTTGTTGAT 57.241 33.333 0.00 0.00 35.74 2.57
99 100 6.742559 TTATCCCTTGTTGATCCTAGTACC 57.257 41.667 0.00 0.00 0.00 3.34
100 101 4.069312 TCCCTTGTTGATCCTAGTACCA 57.931 45.455 0.00 0.00 0.00 3.25
101 102 4.431378 TCCCTTGTTGATCCTAGTACCAA 58.569 43.478 0.00 0.00 0.00 3.67
102 103 4.469945 TCCCTTGTTGATCCTAGTACCAAG 59.530 45.833 0.00 0.00 0.00 3.61
103 104 4.384208 CCCTTGTTGATCCTAGTACCAAGG 60.384 50.000 12.28 12.28 37.13 3.61
104 105 4.469945 CCTTGTTGATCCTAGTACCAAGGA 59.530 45.833 15.09 15.09 46.96 3.36
105 106 5.045869 CCTTGTTGATCCTAGTACCAAGGAA 60.046 44.000 16.34 1.38 46.06 3.36
106 107 6.353082 CCTTGTTGATCCTAGTACCAAGGAAT 60.353 42.308 16.34 7.33 46.06 3.01
107 108 6.636454 TGTTGATCCTAGTACCAAGGAATT 57.364 37.500 16.34 3.72 46.06 2.17
108 109 7.027874 TGTTGATCCTAGTACCAAGGAATTT 57.972 36.000 16.34 3.10 46.06 1.82
109 110 7.110155 TGTTGATCCTAGTACCAAGGAATTTC 58.890 38.462 16.34 11.14 46.06 2.17
110 111 6.884472 TGATCCTAGTACCAAGGAATTTCA 57.116 37.500 16.34 13.11 46.06 2.69
111 112 6.650120 TGATCCTAGTACCAAGGAATTTCAC 58.350 40.000 16.34 6.95 46.06 3.18
112 113 6.214615 TGATCCTAGTACCAAGGAATTTCACA 59.785 38.462 16.34 8.78 46.06 3.58
113 114 5.801380 TCCTAGTACCAAGGAATTTCACAC 58.199 41.667 11.29 0.00 40.23 3.82
114 115 4.941873 CCTAGTACCAAGGAATTTCACACC 59.058 45.833 6.06 0.00 36.08 4.16
115 116 4.447138 AGTACCAAGGAATTTCACACCA 57.553 40.909 0.00 0.00 0.00 4.17
116 117 4.798882 AGTACCAAGGAATTTCACACCAA 58.201 39.130 0.00 0.00 0.00 3.67
117 118 5.205056 AGTACCAAGGAATTTCACACCAAA 58.795 37.500 0.00 0.00 0.00 3.28
118 119 4.400529 ACCAAGGAATTTCACACCAAAC 57.599 40.909 0.00 0.00 0.00 2.93
119 120 3.133901 ACCAAGGAATTTCACACCAAACC 59.866 43.478 0.00 0.00 0.00 3.27
120 121 3.133721 CCAAGGAATTTCACACCAAACCA 59.866 43.478 0.00 0.00 0.00 3.67
121 122 4.383552 CCAAGGAATTTCACACCAAACCAA 60.384 41.667 0.00 0.00 0.00 3.67
122 123 5.181748 CAAGGAATTTCACACCAAACCAAA 58.818 37.500 0.00 0.00 0.00 3.28
123 124 5.428184 AGGAATTTCACACCAAACCAAAA 57.572 34.783 0.00 0.00 0.00 2.44
124 125 5.182487 AGGAATTTCACACCAAACCAAAAC 58.818 37.500 0.00 0.00 0.00 2.43
125 126 4.334203 GGAATTTCACACCAAACCAAAACC 59.666 41.667 0.00 0.00 0.00 3.27
126 127 4.559862 ATTTCACACCAAACCAAAACCA 57.440 36.364 0.00 0.00 0.00 3.67
127 128 3.320673 TTCACACCAAACCAAAACCAC 57.679 42.857 0.00 0.00 0.00 4.16
128 129 1.550976 TCACACCAAACCAAAACCACC 59.449 47.619 0.00 0.00 0.00 4.61
129 130 0.533032 ACACCAAACCAAAACCACCG 59.467 50.000 0.00 0.00 0.00 4.94
130 131 0.818296 CACCAAACCAAAACCACCGA 59.182 50.000 0.00 0.00 0.00 4.69
131 132 1.204941 CACCAAACCAAAACCACCGAA 59.795 47.619 0.00 0.00 0.00 4.30
132 133 2.112190 ACCAAACCAAAACCACCGAAT 58.888 42.857 0.00 0.00 0.00 3.34
133 134 2.502130 ACCAAACCAAAACCACCGAATT 59.498 40.909 0.00 0.00 0.00 2.17
134 135 3.055021 ACCAAACCAAAACCACCGAATTT 60.055 39.130 0.00 0.00 0.00 1.82
135 136 3.558006 CCAAACCAAAACCACCGAATTTC 59.442 43.478 0.00 0.00 0.00 2.17
136 137 4.438148 CAAACCAAAACCACCGAATTTCT 58.562 39.130 0.00 0.00 0.00 2.52
137 138 3.726291 ACCAAAACCACCGAATTTCTG 57.274 42.857 0.00 0.00 0.00 3.02
138 139 2.223947 ACCAAAACCACCGAATTTCTGC 60.224 45.455 0.00 0.00 0.00 4.26
139 140 2.223923 CCAAAACCACCGAATTTCTGCA 60.224 45.455 0.00 0.00 0.00 4.41
140 141 3.052036 CAAAACCACCGAATTTCTGCAG 58.948 45.455 7.63 7.63 0.00 4.41
141 142 1.247567 AACCACCGAATTTCTGCAGG 58.752 50.000 15.13 0.00 0.00 4.85
142 143 0.609131 ACCACCGAATTTCTGCAGGG 60.609 55.000 15.13 8.44 0.00 4.45
143 144 0.322456 CCACCGAATTTCTGCAGGGA 60.322 55.000 15.13 2.85 0.00 4.20
144 145 1.533625 CACCGAATTTCTGCAGGGAA 58.466 50.000 15.13 9.83 0.00 3.97
145 146 1.885887 CACCGAATTTCTGCAGGGAAA 59.114 47.619 15.13 8.79 39.16 3.13
146 147 2.295909 CACCGAATTTCTGCAGGGAAAA 59.704 45.455 15.13 7.73 38.46 2.29
147 148 2.962421 ACCGAATTTCTGCAGGGAAAAA 59.038 40.909 15.13 7.34 38.46 1.94
148 149 3.578282 ACCGAATTTCTGCAGGGAAAAAT 59.422 39.130 15.13 9.49 38.46 1.82
149 150 4.040339 ACCGAATTTCTGCAGGGAAAAATT 59.960 37.500 18.58 18.58 38.46 1.82
150 151 5.245075 ACCGAATTTCTGCAGGGAAAAATTA 59.755 36.000 18.56 0.00 38.46 1.40
151 152 5.576774 CCGAATTTCTGCAGGGAAAAATTAC 59.423 40.000 18.56 13.06 38.46 1.89
152 153 6.389906 CGAATTTCTGCAGGGAAAAATTACT 58.610 36.000 18.56 3.42 38.46 2.24
153 154 6.308766 CGAATTTCTGCAGGGAAAAATTACTG 59.691 38.462 18.56 11.05 38.46 2.74
162 163 7.967890 CAGGGAAAAATTACTGCTCAAAATT 57.032 32.000 0.00 0.00 0.00 1.82
163 164 8.382030 CAGGGAAAAATTACTGCTCAAAATTT 57.618 30.769 0.00 0.00 35.01 1.82
164 165 8.498358 CAGGGAAAAATTACTGCTCAAAATTTC 58.502 33.333 0.00 0.00 32.98 2.17
165 166 8.210265 AGGGAAAAATTACTGCTCAAAATTTCA 58.790 29.630 0.00 0.00 32.98 2.69
166 167 8.498358 GGGAAAAATTACTGCTCAAAATTTCAG 58.502 33.333 3.69 3.69 32.98 3.02
167 168 9.260002 GGAAAAATTACTGCTCAAAATTTCAGA 57.740 29.630 10.62 3.07 32.98 3.27
193 194 2.575735 TGGTGGGAGCATAATTGACAGA 59.424 45.455 0.00 0.00 0.00 3.41
200 201 4.569966 GGAGCATAATTGACAGACTCTGTG 59.430 45.833 16.69 1.64 45.44 3.66
241 242 0.977395 GGAAGTGCAGTGGTAGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
244 245 1.194781 AGTGCAGTGGTAGGAGTGGG 61.195 60.000 0.00 0.00 0.00 4.61
245 246 1.157513 TGCAGTGGTAGGAGTGGGA 59.842 57.895 0.00 0.00 0.00 4.37
246 247 0.904865 TGCAGTGGTAGGAGTGGGAG 60.905 60.000 0.00 0.00 0.00 4.30
247 248 1.617947 GCAGTGGTAGGAGTGGGAGG 61.618 65.000 0.00 0.00 0.00 4.30
248 249 0.978146 CAGTGGTAGGAGTGGGAGGG 60.978 65.000 0.00 0.00 0.00 4.30
339 348 0.544833 TGCATTGCAGGGGTCCAATT 60.545 50.000 7.38 0.00 33.32 2.32
340 349 0.108041 GCATTGCAGGGGTCCAATTG 60.108 55.000 3.15 0.00 29.71 2.32
452 484 1.010793 AGAGAGAGAGAGGGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
453 485 1.421646 GAGAGAGAGAGGGAGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
454 486 1.010793 AGAGAGAGAGGGAGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
455 487 1.421646 GAGAGAGAGGGAGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
456 488 1.010793 AGAGAGAGGGAGAGGGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
457 489 1.421646 GAGAGAGGGAGAGGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
470 502 2.297701 GGAGAGAGGAGTAGCTGACAG 58.702 57.143 0.00 0.00 0.00 3.51
512 544 3.052082 CCCAGAGCAACCACAGCG 61.052 66.667 0.00 0.00 37.01 5.18
513 545 2.031012 CCAGAGCAACCACAGCGA 59.969 61.111 0.00 0.00 37.01 4.93
514 546 2.031516 CCAGAGCAACCACAGCGAG 61.032 63.158 0.00 0.00 37.01 5.03
517 549 2.358003 AGCAACCACAGCGAGCTC 60.358 61.111 2.73 2.73 37.01 4.09
533 574 1.534235 CTCCCCTCTATCCCGTGGG 60.534 68.421 0.00 0.00 37.44 4.61
683 749 1.076044 GAGAGAGCTGCCTCCCTCT 60.076 63.158 12.53 11.26 39.22 3.69
684 750 1.381599 AGAGAGCTGCCTCCCTCTG 60.382 63.158 12.53 0.00 38.48 3.35
685 751 3.082701 AGAGCTGCCTCCCTCTGC 61.083 66.667 0.00 0.00 38.96 4.26
686 752 4.173924 GAGCTGCCTCCCTCTGCC 62.174 72.222 0.00 0.00 31.68 4.85
687 753 4.737476 AGCTGCCTCCCTCTGCCT 62.737 66.667 0.00 0.00 0.00 4.75
688 754 4.486503 GCTGCCTCCCTCTGCCTG 62.487 72.222 0.00 0.00 0.00 4.85
692 758 3.795041 CCTCCCTCTGCCTGCCTG 61.795 72.222 0.00 0.00 0.00 4.85
763 841 2.230750 AGAAAAGCATGCAGAAAGGAGC 59.769 45.455 21.98 0.00 0.00 4.70
773 851 0.415429 AGAAAGGAGCAGGAGGAGGA 59.585 55.000 0.00 0.00 0.00 3.71
812 895 2.612721 GCATCGGCCTCCAATTGTTTTT 60.613 45.455 0.00 0.00 0.00 1.94
817 900 2.028112 GGCCTCCAATTGTTTTTCCTCC 60.028 50.000 4.43 0.00 0.00 4.30
818 901 2.899900 GCCTCCAATTGTTTTTCCTCCT 59.100 45.455 4.43 0.00 0.00 3.69
821 904 2.556622 TCCAATTGTTTTTCCTCCTCGC 59.443 45.455 4.43 0.00 0.00 5.03
838 923 1.479323 TCGCGGTAAGTAATCTTGGCT 59.521 47.619 6.13 0.00 35.36 4.75
861 946 5.527951 TGATGTTTTCTTGTTTCAATCCGG 58.472 37.500 0.00 0.00 0.00 5.14
864 949 3.363341 TTTCTTGTTTCAATCCGGTGC 57.637 42.857 0.00 0.00 0.00 5.01
867 952 2.293122 TCTTGTTTCAATCCGGTGCTTG 59.707 45.455 0.00 4.57 0.00 4.01
868 953 0.958091 TGTTTCAATCCGGTGCTTGG 59.042 50.000 0.00 0.00 0.00 3.61
872 957 2.570415 TCAATCCGGTGCTTGGTTTA 57.430 45.000 0.00 0.00 0.00 2.01
876 961 4.282195 TCAATCCGGTGCTTGGTTTATTTT 59.718 37.500 0.00 0.00 0.00 1.82
877 962 3.651803 TCCGGTGCTTGGTTTATTTTG 57.348 42.857 0.00 0.00 0.00 2.44
878 963 2.297597 TCCGGTGCTTGGTTTATTTTGG 59.702 45.455 0.00 0.00 0.00 3.28
880 965 3.493524 CCGGTGCTTGGTTTATTTTGGTT 60.494 43.478 0.00 0.00 0.00 3.67
882 967 3.812609 GGTGCTTGGTTTATTTTGGTTGG 59.187 43.478 0.00 0.00 0.00 3.77
884 969 4.878971 GTGCTTGGTTTATTTTGGTTGGTT 59.121 37.500 0.00 0.00 0.00 3.67
885 970 4.878397 TGCTTGGTTTATTTTGGTTGGTTG 59.122 37.500 0.00 0.00 0.00 3.77
886 971 4.274705 GCTTGGTTTATTTTGGTTGGTTGG 59.725 41.667 0.00 0.00 0.00 3.77
889 974 5.186198 TGGTTTATTTTGGTTGGTTGGTTG 58.814 37.500 0.00 0.00 0.00 3.77
890 975 5.186942 GGTTTATTTTGGTTGGTTGGTTGT 58.813 37.500 0.00 0.00 0.00 3.32
891 976 5.648526 GGTTTATTTTGGTTGGTTGGTTGTT 59.351 36.000 0.00 0.00 0.00 2.83
895 980 0.108615 TGGTTGGTTGGTTGTTTGCG 60.109 50.000 0.00 0.00 0.00 4.85
896 981 0.173708 GGTTGGTTGGTTGTTTGCGA 59.826 50.000 0.00 0.00 0.00 5.10
897 982 1.555477 GTTGGTTGGTTGTTTGCGAG 58.445 50.000 0.00 0.00 0.00 5.03
899 984 1.178276 TGGTTGGTTGTTTGCGAGTT 58.822 45.000 0.00 0.00 0.00 3.01
900 985 1.546476 TGGTTGGTTGTTTGCGAGTTT 59.454 42.857 0.00 0.00 0.00 2.66
901 986 2.190161 GGTTGGTTGTTTGCGAGTTTC 58.810 47.619 0.00 0.00 0.00 2.78
902 987 2.159296 GGTTGGTTGTTTGCGAGTTTCT 60.159 45.455 0.00 0.00 0.00 2.52
903 988 3.507786 GTTGGTTGTTTGCGAGTTTCTT 58.492 40.909 0.00 0.00 0.00 2.52
904 989 3.859411 TGGTTGTTTGCGAGTTTCTTT 57.141 38.095 0.00 0.00 0.00 2.52
905 990 3.765026 TGGTTGTTTGCGAGTTTCTTTC 58.235 40.909 0.00 0.00 0.00 2.62
906 991 3.113322 GGTTGTTTGCGAGTTTCTTTCC 58.887 45.455 0.00 0.00 0.00 3.13
907 992 2.748461 TGTTTGCGAGTTTCTTTCCG 57.252 45.000 0.00 0.00 0.00 4.30
908 993 1.268335 TGTTTGCGAGTTTCTTTCCGC 60.268 47.619 0.00 0.00 46.82 5.54
909 994 1.002792 GTTTGCGAGTTTCTTTCCGCT 60.003 47.619 0.00 0.00 46.77 5.52
910 995 0.586319 TTGCGAGTTTCTTTCCGCTG 59.414 50.000 0.00 0.00 46.77 5.18
911 996 1.154395 GCGAGTTTCTTTCCGCTGC 60.154 57.895 0.00 0.00 43.75 5.25
966 1070 3.162666 TGTTGGTTGTTGTTGGGTACAA 58.837 40.909 0.00 0.00 44.31 2.41
976 1080 5.723672 TTGTTGGGTACAAACAGTCAAAA 57.276 34.783 11.72 0.00 43.58 2.44
978 1082 4.158764 TGTTGGGTACAAACAGTCAAAAGG 59.841 41.667 8.77 0.00 38.54 3.11
979 1083 3.292460 TGGGTACAAACAGTCAAAAGGG 58.708 45.455 0.00 0.00 0.00 3.95
982 1086 4.457466 GGTACAAACAGTCAAAAGGGAGA 58.543 43.478 0.00 0.00 0.00 3.71
983 1087 4.515567 GGTACAAACAGTCAAAAGGGAGAG 59.484 45.833 0.00 0.00 0.00 3.20
984 1088 3.555966 ACAAACAGTCAAAAGGGAGAGG 58.444 45.455 0.00 0.00 0.00 3.69
985 1089 2.887152 CAAACAGTCAAAAGGGAGAGGG 59.113 50.000 0.00 0.00 0.00 4.30
986 1090 2.118403 ACAGTCAAAAGGGAGAGGGA 57.882 50.000 0.00 0.00 0.00 4.20
1127 1247 3.260100 CCACCAGGTGCCTTCCCT 61.260 66.667 14.98 0.00 31.34 4.20
1128 1248 2.845345 CCACCAGGTGCCTTCCCTT 61.845 63.158 14.98 0.00 31.34 3.95
1253 1441 6.774717 ATTATTTTCGCAATTTCTTCGACG 57.225 33.333 0.00 0.00 31.48 5.12
1256 1444 1.346365 TCGCAATTTCTTCGACGGAG 58.654 50.000 0.00 0.00 0.00 4.63
1272 1460 6.713903 TTCGACGGAGTGGATAGATATAAAGT 59.286 38.462 0.00 0.00 46.32 2.66
1341 1530 3.989817 GGTTGCATCTGATTTGGTGTTTC 59.010 43.478 0.00 0.00 0.00 2.78
1434 1623 1.499438 TCCCACGATGTCCTCTATCCT 59.501 52.381 0.00 0.00 0.00 3.24
1435 1624 1.615883 CCCACGATGTCCTCTATCCTG 59.384 57.143 0.00 0.00 0.00 3.86
1436 1625 2.311463 CCACGATGTCCTCTATCCTGT 58.689 52.381 0.00 0.00 0.00 4.00
1437 1626 2.695666 CCACGATGTCCTCTATCCTGTT 59.304 50.000 0.00 0.00 0.00 3.16
1438 1627 3.243569 CCACGATGTCCTCTATCCTGTTC 60.244 52.174 0.00 0.00 0.00 3.18
1439 1628 2.959707 ACGATGTCCTCTATCCTGTTCC 59.040 50.000 0.00 0.00 0.00 3.62
1487 1682 1.216175 CTCCCAATCCCACATCCACAT 59.784 52.381 0.00 0.00 0.00 3.21
1565 1761 3.489738 CCCAAATTCCTGCTGCTAAATCG 60.490 47.826 0.00 0.00 0.00 3.34
1721 1944 4.035102 GGTGTGCAGGGGAGGTCC 62.035 72.222 0.00 0.00 0.00 4.46
1907 2139 2.370281 TCGGTGAGTTCAAGAGCATC 57.630 50.000 0.00 0.00 0.00 3.91
1911 2143 2.290577 GGTGAGTTCAAGAGCATCCCTT 60.291 50.000 0.00 0.00 33.66 3.95
2014 2274 0.181114 ATGCAGAGCCGAATGCCTTA 59.819 50.000 0.00 0.00 41.85 2.69
2074 2334 7.064016 GTCCTTGACATTAGAACTCAGATTGTC 59.936 40.741 0.00 0.00 32.09 3.18
2115 2375 9.469807 AATGTCTGAGTAATGAATCTCGATTAC 57.530 33.333 0.00 0.00 35.93 1.89
2134 2394 2.977914 ACTACATGTAGGCTGCAGTTG 58.022 47.619 31.20 7.99 37.49 3.16
2233 2521 7.720442 AGGCTAAATTATTCTCAATGCTTTCC 58.280 34.615 0.00 0.00 0.00 3.13
2320 2609 6.930164 ACCACTTACGTAATTGTGTGTTATGA 59.070 34.615 20.24 0.00 0.00 2.15
2396 2686 5.163774 GCAAGCTTGAATCTTCTAGTCTTGG 60.164 44.000 30.39 0.00 40.18 3.61
2397 2687 5.096443 AGCTTGAATCTTCTAGTCTTGGG 57.904 43.478 3.89 0.00 33.49 4.12
2438 2728 6.522625 TTAGCTTATTATTTGTGCCTGCAA 57.477 33.333 0.00 0.00 0.00 4.08
2439 2729 5.002464 AGCTTATTATTTGTGCCTGCAAG 57.998 39.130 0.00 0.00 0.00 4.01
2440 2730 3.553105 GCTTATTATTTGTGCCTGCAAGC 59.447 43.478 0.00 0.00 0.00 4.01
2441 2731 4.678840 GCTTATTATTTGTGCCTGCAAGCT 60.679 41.667 9.08 0.00 34.49 3.74
2442 2732 3.967332 ATTATTTGTGCCTGCAAGCTT 57.033 38.095 9.08 0.00 0.00 3.74
2443 2733 2.728690 TATTTGTGCCTGCAAGCTTG 57.271 45.000 22.44 22.44 0.00 4.01
2444 2734 1.042229 ATTTGTGCCTGCAAGCTTGA 58.958 45.000 30.39 13.73 0.00 3.02
2445 2735 0.822811 TTTGTGCCTGCAAGCTTGAA 59.177 45.000 30.39 19.63 0.00 2.69
2446 2736 1.042229 TTGTGCCTGCAAGCTTGAAT 58.958 45.000 30.39 0.00 0.00 2.57
2447 2737 0.599558 TGTGCCTGCAAGCTTGAATC 59.400 50.000 30.39 14.45 0.00 2.52
2448 2738 0.886563 GTGCCTGCAAGCTTGAATCT 59.113 50.000 30.39 0.00 0.00 2.40
2449 2739 1.271656 GTGCCTGCAAGCTTGAATCTT 59.728 47.619 30.39 0.00 0.00 2.40
2450 2740 1.542915 TGCCTGCAAGCTTGAATCTTC 59.457 47.619 30.39 11.38 0.00 2.87
2451 2741 1.817447 GCCTGCAAGCTTGAATCTTCT 59.183 47.619 30.39 0.00 0.00 2.85
2452 2742 3.012518 GCCTGCAAGCTTGAATCTTCTA 58.987 45.455 30.39 4.15 0.00 2.10
2453 2743 3.065095 GCCTGCAAGCTTGAATCTTCTAG 59.935 47.826 30.39 5.61 33.97 2.43
2454 2744 4.260170 CCTGCAAGCTTGAATCTTCTAGT 58.740 43.478 30.39 0.00 33.49 2.57
2455 2745 4.332268 CCTGCAAGCTTGAATCTTCTAGTC 59.668 45.833 30.39 7.92 33.49 2.59
2456 2746 5.157940 TGCAAGCTTGAATCTTCTAGTCT 57.842 39.130 30.39 0.00 33.49 3.24
2457 2747 5.555017 TGCAAGCTTGAATCTTCTAGTCTT 58.445 37.500 30.39 4.97 33.49 3.01
2458 2748 5.410746 TGCAAGCTTGAATCTTCTAGTCTTG 59.589 40.000 30.39 20.25 41.19 3.02
2459 2749 5.163774 GCAAGCTTGAATCTTCTAGTCTTGG 60.164 44.000 30.39 0.00 40.18 3.61
2460 2750 5.096443 AGCTTGAATCTTCTAGTCTTGGG 57.904 43.478 3.89 0.00 33.49 4.12
2461 2751 4.534103 AGCTTGAATCTTCTAGTCTTGGGT 59.466 41.667 3.89 0.00 33.49 4.51
2462 2752 4.633565 GCTTGAATCTTCTAGTCTTGGGTG 59.366 45.833 3.89 0.00 33.49 4.61
2463 2753 5.799213 CTTGAATCTTCTAGTCTTGGGTGT 58.201 41.667 0.00 0.00 0.00 4.16
2464 2754 5.152623 TGAATCTTCTAGTCTTGGGTGTG 57.847 43.478 0.00 0.00 0.00 3.82
2465 2755 3.618690 ATCTTCTAGTCTTGGGTGTGC 57.381 47.619 0.00 0.00 0.00 4.57
2466 2756 2.609747 TCTTCTAGTCTTGGGTGTGCT 58.390 47.619 0.00 0.00 0.00 4.40
2467 2757 2.300152 TCTTCTAGTCTTGGGTGTGCTG 59.700 50.000 0.00 0.00 0.00 4.41
2468 2758 2.009681 TCTAGTCTTGGGTGTGCTGA 57.990 50.000 0.00 0.00 0.00 4.26
2469 2759 2.325484 TCTAGTCTTGGGTGTGCTGAA 58.675 47.619 0.00 0.00 0.00 3.02
2470 2760 2.703536 TCTAGTCTTGGGTGTGCTGAAA 59.296 45.455 0.00 0.00 0.00 2.69
2471 2761 1.680338 AGTCTTGGGTGTGCTGAAAC 58.320 50.000 0.00 0.00 0.00 2.78
2472 2762 1.064758 AGTCTTGGGTGTGCTGAAACA 60.065 47.619 0.00 0.00 0.00 2.83
2473 2763 1.956477 GTCTTGGGTGTGCTGAAACAT 59.044 47.619 0.00 0.00 31.49 2.71
2474 2764 2.030805 GTCTTGGGTGTGCTGAAACATC 60.031 50.000 0.00 0.00 31.49 3.06
2479 2769 3.665745 GGTGTGCTGAAACATCCATTT 57.334 42.857 0.00 0.00 31.49 2.32
2480 2770 4.782019 GGTGTGCTGAAACATCCATTTA 57.218 40.909 0.00 0.00 31.49 1.40
2481 2771 4.737054 GGTGTGCTGAAACATCCATTTAG 58.263 43.478 0.00 0.00 31.49 1.85
2482 2772 4.168760 GTGTGCTGAAACATCCATTTAGC 58.831 43.478 0.00 0.00 31.49 3.09
2483 2773 4.081406 TGTGCTGAAACATCCATTTAGCT 58.919 39.130 0.00 0.00 0.00 3.32
2484 2774 4.523943 TGTGCTGAAACATCCATTTAGCTT 59.476 37.500 0.00 0.00 0.00 3.74
2485 2775 5.709631 TGTGCTGAAACATCCATTTAGCTTA 59.290 36.000 0.00 0.00 0.00 3.09
2486 2776 6.377996 TGTGCTGAAACATCCATTTAGCTTAT 59.622 34.615 0.00 0.00 0.00 1.73
2487 2777 7.093814 TGTGCTGAAACATCCATTTAGCTTATT 60.094 33.333 0.00 0.00 0.00 1.40
2488 2778 8.405531 GTGCTGAAACATCCATTTAGCTTATTA 58.594 33.333 0.00 0.00 0.00 0.98
2489 2779 9.135189 TGCTGAAACATCCATTTAGCTTATTAT 57.865 29.630 0.00 0.00 0.00 1.28
2490 2780 9.971922 GCTGAAACATCCATTTAGCTTATTATT 57.028 29.630 0.00 0.00 0.00 1.40
2495 2785 9.533253 AACATCCATTTAGCTTATTATTTGTGC 57.467 29.630 0.00 0.00 0.00 4.57
2496 2786 8.143835 ACATCCATTTAGCTTATTATTTGTGCC 58.856 33.333 0.00 0.00 0.00 5.01
2497 2787 7.896383 TCCATTTAGCTTATTATTTGTGCCT 57.104 32.000 0.00 0.00 0.00 4.75
2498 2788 7.715657 TCCATTTAGCTTATTATTTGTGCCTG 58.284 34.615 0.00 0.00 0.00 4.85
2499 2789 6.421801 CCATTTAGCTTATTATTTGTGCCTGC 59.578 38.462 0.00 0.00 0.00 4.85
2500 2790 6.522625 TTTAGCTTATTATTTGTGCCTGCA 57.477 33.333 0.00 0.00 0.00 4.41
2524 2814 5.486526 AGCTTGAATCTTCTAGTCTTGGTG 58.513 41.667 3.89 0.00 33.49 4.17
2546 2836 4.156556 TGTGCTGAAACATCCATTTAGCTC 59.843 41.667 0.00 2.45 0.00 4.09
2652 3012 1.065636 TGCAAGCCTGGATCTCTCTTG 60.066 52.381 0.00 1.30 37.70 3.02
2705 3065 9.057089 GGATCTCTCTTTCAGTTTGTTTTTCTA 57.943 33.333 0.00 0.00 0.00 2.10
2926 3288 5.841957 AATTGGCCAAGTTTATCTGCTAG 57.158 39.130 24.94 0.00 0.00 3.42
3134 3496 9.421806 CTGCATTTTGATCATTGTTTACCTAAA 57.578 29.630 0.00 0.00 0.00 1.85
3135 3497 9.770097 TGCATTTTGATCATTGTTTACCTAAAA 57.230 25.926 0.00 0.00 0.00 1.52
3144 3521 8.789881 TCATTGTTTACCTAAAATTGTGTTCG 57.210 30.769 0.00 0.00 0.00 3.95
3184 3561 4.454728 AAATGTTCCATGTTTCCCATCG 57.545 40.909 0.00 0.00 0.00 3.84
3190 3567 1.176527 CATGTTTCCCATCGGCAACT 58.823 50.000 0.00 0.00 0.00 3.16
3196 3573 5.010933 TGTTTCCCATCGGCAACTTAATTA 58.989 37.500 0.00 0.00 0.00 1.40
3319 3696 7.682787 ATCATTCTAACTAGATGTGTTCCCT 57.317 36.000 0.00 0.00 31.40 4.20
3343 3720 6.100004 TGCTTTCTGTATGACTGTAGTTAGC 58.900 40.000 0.00 0.00 0.00 3.09
3348 3725 6.343703 TCTGTATGACTGTAGTTAGCGTAGA 58.656 40.000 0.00 0.00 0.00 2.59
3393 3770 4.847198 TGTCTTGTGCATACATCTTGGAT 58.153 39.130 0.00 0.00 36.53 3.41
3400 3777 3.319689 TGCATACATCTTGGATTGCATGG 59.680 43.478 0.00 0.00 0.00 3.66
3412 3789 4.038282 TGGATTGCATGGTATTCATTGCTC 59.962 41.667 0.00 0.00 32.92 4.26
3447 3824 5.059833 ACTGGAAAAGTGTGAGATTCTGTC 58.940 41.667 0.00 0.00 37.88 3.51
3452 3829 0.741221 GTGTGAGATTCTGTCGGGGC 60.741 60.000 0.00 0.00 0.00 5.80
3526 3903 2.420642 CCAGACAGTCATTCACCAGTG 58.579 52.381 2.66 0.00 0.00 3.66
3633 4010 3.375922 TCCAAAAACGTGTTCTGTTCTCC 59.624 43.478 0.00 0.00 0.00 3.71
3701 4078 1.546923 CCAGCAAAGCATTCCACATCA 59.453 47.619 0.00 0.00 0.00 3.07
3705 4082 2.734492 GCAAAGCATTCCACATCAGAGC 60.734 50.000 0.00 0.00 0.00 4.09
3709 4086 1.941294 GCATTCCACATCAGAGCTGAG 59.059 52.381 6.34 1.73 43.61 3.35
3712 4089 0.813821 TCCACATCAGAGCTGAGTCG 59.186 55.000 6.34 0.43 43.61 4.18
3724 4101 1.202510 GCTGAGTCGAGCATTGGATCT 60.203 52.381 8.99 0.00 38.95 2.75
3994 4374 6.088883 GTCGACATTCTTCTTCTTCTTCAGAC 59.911 42.308 11.55 0.00 0.00 3.51
4024 4404 4.373156 AATAGGAGGACAAACAGCTGTT 57.627 40.909 26.36 26.36 40.50 3.16
4099 4479 4.536765 AGGGTTTTGACTTGAATGTGTCT 58.463 39.130 0.00 0.00 34.57 3.41
4232 4612 3.057526 GGTCCAGGAAAACATTTCTTCCG 60.058 47.826 0.00 0.00 44.94 4.30
4234 4614 3.818773 TCCAGGAAAACATTTCTTCCGTC 59.181 43.478 3.16 0.00 44.94 4.79
4492 4872 1.795286 GCTCAGACACTCGTTTCCTTG 59.205 52.381 0.00 0.00 0.00 3.61
4591 4971 2.487428 CAGGTCTCGCTGGACTCG 59.513 66.667 6.03 0.00 36.55 4.18
4615 4995 0.036010 AGGAAGGCGTGATGAACCTG 60.036 55.000 0.00 0.00 32.92 4.00
4648 5028 1.330655 ACGATGGGGATTCAGTCGCT 61.331 55.000 0.00 0.00 39.58 4.93
4694 5074 0.955428 TTCGTGTGGGATCAAGCTGC 60.955 55.000 0.00 0.00 0.00 5.25
4798 5178 5.551233 GACTTGCATGCTATAGGGTATGAA 58.449 41.667 20.33 0.00 32.39 2.57
4810 5190 4.779993 AGGGTATGAAATCAGGAAGACC 57.220 45.455 0.00 0.00 0.00 3.85
4819 5199 0.906756 TCAGGAAGACCAGGCAGAGG 60.907 60.000 0.00 0.00 38.94 3.69
4843 5223 2.999063 CCCGGGGACAAGTACGGT 60.999 66.667 14.71 0.00 44.57 4.83
4921 5301 2.892373 TTTTTCATACGGAAGCGCTG 57.108 45.000 12.58 0.00 36.72 5.18
4923 5303 0.036765 TTTCATACGGAAGCGCTGGT 60.037 50.000 12.58 12.68 36.72 4.00
4973 5417 0.537653 GGAGTAGGAGTTGTGAGGGC 59.462 60.000 0.00 0.00 0.00 5.19
5000 5450 0.179045 GCCAGGCCTGTGAATATCGT 60.179 55.000 30.63 0.00 0.00 3.73
5011 5461 5.173312 CCTGTGAATATCGTCGTGTATGAAC 59.827 44.000 0.00 0.00 0.00 3.18
5062 5513 4.789075 CGCCATCGTTCGGTCGGT 62.789 66.667 1.08 0.00 0.00 4.69
5329 5807 1.153628 CTACGGTGTACAGCCCTGC 60.154 63.158 18.90 0.00 0.00 4.85
5332 5810 3.646715 GGTGTACAGCCCTGCCCA 61.647 66.667 14.20 0.00 0.00 5.36
5334 5812 4.033776 TGTACAGCCCTGCCCAGC 62.034 66.667 0.00 0.00 0.00 4.85
5359 5841 1.004745 CTGGTGGTCCAAATACCTGCT 59.995 52.381 0.00 0.00 43.81 4.24
5371 5853 1.757423 TACCTGCTCTGTGCTGTGCA 61.757 55.000 3.20 5.87 43.37 4.57
5372 5854 1.895231 CCTGCTCTGTGCTGTGCAA 60.895 57.895 3.20 0.00 41.47 4.08
5410 5892 4.333913 TGGCACTTGTTTGCATACAAAT 57.666 36.364 20.78 10.75 46.93 2.32
5512 5994 8.726988 TCAGTTTGTAATGTAGCCAAGATTTAC 58.273 33.333 0.00 0.00 0.00 2.01
5548 6030 5.050159 GCCAGAAAAACTCGCAATCATTTTT 60.050 36.000 0.00 0.00 37.05 1.94
5605 6087 4.085415 CGCAACATTCAGCTTGTCTTTTTC 60.085 41.667 0.00 0.00 0.00 2.29
5646 6129 6.872670 ACTAGAAATCTGACGTCGAATTTC 57.127 37.500 29.64 29.64 0.00 2.17
5704 6187 9.738832 TTTAAAAACACCCTTTATCGAAAGAAG 57.261 29.630 0.00 0.00 44.23 2.85
5705 6188 7.576861 AAAAACACCCTTTATCGAAAGAAGA 57.423 32.000 0.00 0.00 44.23 2.87
5706 6189 6.555812 AAACACCCTTTATCGAAAGAAGAC 57.444 37.500 0.00 0.00 44.23 3.01
5707 6190 5.485209 ACACCCTTTATCGAAAGAAGACT 57.515 39.130 0.00 0.00 44.23 3.24
5758 6244 8.154203 ACCAAAAGGAGAAGTGAAAAAGAAAAA 58.846 29.630 0.00 0.00 0.00 1.94
5769 6255 1.524008 AAAGAAAAAGCGGAGGGGCG 61.524 55.000 0.00 0.00 38.18 6.13
5770 6256 2.359478 GAAAAAGCGGAGGGGCGA 60.359 61.111 0.00 0.00 38.18 5.54
5777 6263 3.051392 GCGGAGGGGCGATGTTTTG 62.051 63.158 0.00 0.00 0.00 2.44
5778 6264 1.674322 CGGAGGGGCGATGTTTTGT 60.674 57.895 0.00 0.00 0.00 2.83
5790 6276 6.292274 GGGCGATGTTTTGTATGCAAATTATG 60.292 38.462 9.89 1.60 43.26 1.90
5791 6277 6.292274 GGCGATGTTTTGTATGCAAATTATGG 60.292 38.462 9.89 9.49 43.26 2.74
5825 6311 5.661056 TGTTAATTGTCATCCTCTCGACT 57.339 39.130 0.00 0.00 33.18 4.18
5862 6348 2.857448 GCGTTCGATTTGCCACGA 59.143 55.556 9.11 0.00 34.49 4.35
5863 6349 1.423845 GCGTTCGATTTGCCACGAT 59.576 52.632 9.11 0.00 38.30 3.73
5869 6358 4.791163 CGTTCGATTTGCCACGATAAAAAT 59.209 37.500 0.00 0.00 38.30 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.251634 TGGACGTATGGCTGCATTGA 59.748 50.000 0.50 0.00 0.00 2.57
2 3 0.378257 GTGGACGTATGGCTGCATTG 59.622 55.000 0.50 0.00 0.00 2.82
5 6 1.079197 CTGTGGACGTATGGCTGCA 60.079 57.895 0.50 0.00 0.00 4.41
6 7 1.084370 GTCTGTGGACGTATGGCTGC 61.084 60.000 0.00 0.00 32.47 5.25
10 11 1.819288 AGTCTGTCTGTGGACGTATGG 59.181 52.381 0.00 0.00 44.83 2.74
11 12 2.868662 CAGTCTGTCTGTGGACGTATG 58.131 52.381 0.00 0.00 44.83 2.39
21 22 2.262915 GCGGGGACAGTCTGTCTG 59.737 66.667 27.82 19.68 46.19 3.51
22 23 2.997897 GGCGGGGACAGTCTGTCT 60.998 66.667 27.82 0.00 46.19 3.41
23 24 4.083862 GGGCGGGGACAGTCTGTC 62.084 72.222 22.61 22.61 46.23 3.51
24 25 4.640690 AGGGCGGGGACAGTCTGT 62.641 66.667 4.81 4.81 0.00 3.41
25 26 4.087892 CAGGGCGGGGACAGTCTG 62.088 72.222 0.00 0.00 0.00 3.51
54 55 8.768208 GATAATAATATCTTGGGCTTGGCCTGG 61.768 44.444 14.28 7.12 40.60 4.45
55 56 6.096001 GATAATAATATCTTGGGCTTGGCCTG 59.904 42.308 14.28 7.46 40.60 4.85
56 57 6.190587 GATAATAATATCTTGGGCTTGGCCT 58.809 40.000 14.28 0.00 40.60 5.19
57 58 5.360999 GGATAATAATATCTTGGGCTTGGCC 59.639 44.000 6.25 6.25 41.74 5.36
58 59 5.360999 GGGATAATAATATCTTGGGCTTGGC 59.639 44.000 0.00 0.00 38.39 4.52
59 60 6.735556 AGGGATAATAATATCTTGGGCTTGG 58.264 40.000 0.00 0.00 38.39 3.61
60 61 7.671398 ACAAGGGATAATAATATCTTGGGCTTG 59.329 37.037 0.00 0.00 38.39 4.01
61 62 7.769652 ACAAGGGATAATAATATCTTGGGCTT 58.230 34.615 0.00 0.00 38.39 4.35
62 63 7.348680 ACAAGGGATAATAATATCTTGGGCT 57.651 36.000 0.00 0.00 38.39 5.19
63 64 7.669722 TCAACAAGGGATAATAATATCTTGGGC 59.330 37.037 0.00 0.00 38.39 5.36
64 65 9.759473 ATCAACAAGGGATAATAATATCTTGGG 57.241 33.333 0.00 0.00 38.39 4.12
73 74 8.877195 GGTACTAGGATCAACAAGGGATAATAA 58.123 37.037 0.00 0.00 0.00 1.40
74 75 8.014263 TGGTACTAGGATCAACAAGGGATAATA 58.986 37.037 0.00 0.00 0.00 0.98
75 76 6.849697 TGGTACTAGGATCAACAAGGGATAAT 59.150 38.462 0.00 0.00 0.00 1.28
76 77 6.206787 TGGTACTAGGATCAACAAGGGATAA 58.793 40.000 0.00 0.00 0.00 1.75
77 78 5.784023 TGGTACTAGGATCAACAAGGGATA 58.216 41.667 0.00 0.00 0.00 2.59
78 79 4.631234 TGGTACTAGGATCAACAAGGGAT 58.369 43.478 0.00 0.00 0.00 3.85
79 80 4.069312 TGGTACTAGGATCAACAAGGGA 57.931 45.455 0.00 0.00 0.00 4.20
80 81 4.384208 CCTTGGTACTAGGATCAACAAGGG 60.384 50.000 15.79 7.07 45.91 3.95
81 82 4.770795 CCTTGGTACTAGGATCAACAAGG 58.229 47.826 11.27 11.27 44.92 3.61
82 83 5.677319 TCCTTGGTACTAGGATCAACAAG 57.323 43.478 11.69 2.02 36.88 3.16
83 84 6.636454 ATTCCTTGGTACTAGGATCAACAA 57.364 37.500 15.13 0.00 41.30 2.83
84 85 6.636454 AATTCCTTGGTACTAGGATCAACA 57.364 37.500 15.13 4.10 41.30 3.33
85 86 7.065923 GTGAAATTCCTTGGTACTAGGATCAAC 59.934 40.741 15.13 9.82 41.30 3.18
86 87 7.110155 GTGAAATTCCTTGGTACTAGGATCAA 58.890 38.462 15.13 0.00 41.30 2.57
87 88 6.214615 TGTGAAATTCCTTGGTACTAGGATCA 59.785 38.462 15.13 13.31 41.30 2.92
88 89 6.539103 GTGTGAAATTCCTTGGTACTAGGATC 59.461 42.308 15.13 11.50 41.30 3.36
89 90 6.415573 GTGTGAAATTCCTTGGTACTAGGAT 58.584 40.000 15.13 4.24 41.30 3.24
90 91 5.280317 GGTGTGAAATTCCTTGGTACTAGGA 60.280 44.000 11.69 11.69 40.01 2.94
91 92 4.941873 GGTGTGAAATTCCTTGGTACTAGG 59.058 45.833 7.91 7.91 0.00 3.02
92 93 5.556915 TGGTGTGAAATTCCTTGGTACTAG 58.443 41.667 0.00 0.00 0.00 2.57
93 94 5.570205 TGGTGTGAAATTCCTTGGTACTA 57.430 39.130 0.00 0.00 0.00 1.82
94 95 4.447138 TGGTGTGAAATTCCTTGGTACT 57.553 40.909 0.00 0.00 0.00 2.73
95 96 5.286438 GTTTGGTGTGAAATTCCTTGGTAC 58.714 41.667 0.00 0.00 0.00 3.34
96 97 4.342665 GGTTTGGTGTGAAATTCCTTGGTA 59.657 41.667 0.00 0.00 0.00 3.25
97 98 3.133901 GGTTTGGTGTGAAATTCCTTGGT 59.866 43.478 0.00 0.00 0.00 3.67
98 99 3.133721 TGGTTTGGTGTGAAATTCCTTGG 59.866 43.478 0.00 0.00 0.00 3.61
99 100 4.399004 TGGTTTGGTGTGAAATTCCTTG 57.601 40.909 0.00 0.00 0.00 3.61
100 101 5.428184 TTTGGTTTGGTGTGAAATTCCTT 57.572 34.783 0.00 0.00 0.00 3.36
101 102 5.182487 GTTTTGGTTTGGTGTGAAATTCCT 58.818 37.500 0.00 0.00 0.00 3.36
102 103 4.334203 GGTTTTGGTTTGGTGTGAAATTCC 59.666 41.667 0.00 0.00 0.00 3.01
103 104 4.938226 TGGTTTTGGTTTGGTGTGAAATTC 59.062 37.500 0.00 0.00 0.00 2.17
104 105 4.697828 GTGGTTTTGGTTTGGTGTGAAATT 59.302 37.500 0.00 0.00 0.00 1.82
105 106 4.257731 GTGGTTTTGGTTTGGTGTGAAAT 58.742 39.130 0.00 0.00 0.00 2.17
106 107 3.557264 GGTGGTTTTGGTTTGGTGTGAAA 60.557 43.478 0.00 0.00 0.00 2.69
107 108 2.028020 GGTGGTTTTGGTTTGGTGTGAA 60.028 45.455 0.00 0.00 0.00 3.18
108 109 1.550976 GGTGGTTTTGGTTTGGTGTGA 59.449 47.619 0.00 0.00 0.00 3.58
109 110 1.737363 CGGTGGTTTTGGTTTGGTGTG 60.737 52.381 0.00 0.00 0.00 3.82
110 111 0.533032 CGGTGGTTTTGGTTTGGTGT 59.467 50.000 0.00 0.00 0.00 4.16
111 112 0.818296 TCGGTGGTTTTGGTTTGGTG 59.182 50.000 0.00 0.00 0.00 4.17
112 113 1.558233 TTCGGTGGTTTTGGTTTGGT 58.442 45.000 0.00 0.00 0.00 3.67
113 114 2.900716 ATTCGGTGGTTTTGGTTTGG 57.099 45.000 0.00 0.00 0.00 3.28
114 115 4.269844 CAGAAATTCGGTGGTTTTGGTTTG 59.730 41.667 0.00 0.00 0.00 2.93
115 116 4.438148 CAGAAATTCGGTGGTTTTGGTTT 58.562 39.130 0.00 0.00 0.00 3.27
116 117 3.739830 GCAGAAATTCGGTGGTTTTGGTT 60.740 43.478 0.00 0.00 0.00 3.67
117 118 2.223947 GCAGAAATTCGGTGGTTTTGGT 60.224 45.455 0.00 0.00 0.00 3.67
118 119 2.223923 TGCAGAAATTCGGTGGTTTTGG 60.224 45.455 0.00 0.00 0.00 3.28
119 120 3.052036 CTGCAGAAATTCGGTGGTTTTG 58.948 45.455 8.42 0.00 0.00 2.44
120 121 2.035832 CCTGCAGAAATTCGGTGGTTTT 59.964 45.455 17.39 0.00 0.00 2.43
121 122 1.613437 CCTGCAGAAATTCGGTGGTTT 59.387 47.619 17.39 0.00 0.00 3.27
122 123 1.247567 CCTGCAGAAATTCGGTGGTT 58.752 50.000 17.39 0.00 0.00 3.67
123 124 0.609131 CCCTGCAGAAATTCGGTGGT 60.609 55.000 17.39 0.00 0.00 4.16
124 125 0.322456 TCCCTGCAGAAATTCGGTGG 60.322 55.000 17.39 4.23 0.00 4.61
125 126 1.533625 TTCCCTGCAGAAATTCGGTG 58.466 50.000 17.39 0.00 0.00 4.94
126 127 2.286365 TTTCCCTGCAGAAATTCGGT 57.714 45.000 17.39 0.00 30.87 4.69
127 128 3.658757 TTTTTCCCTGCAGAAATTCGG 57.341 42.857 17.39 6.70 35.74 4.30
128 129 6.308766 CAGTAATTTTTCCCTGCAGAAATTCG 59.691 38.462 20.81 11.35 35.74 3.34
129 130 7.586714 CAGTAATTTTTCCCTGCAGAAATTC 57.413 36.000 20.81 14.68 35.74 2.17
138 139 7.967890 AATTTTGAGCAGTAATTTTTCCCTG 57.032 32.000 0.00 0.00 0.00 4.45
139 140 8.210265 TGAAATTTTGAGCAGTAATTTTTCCCT 58.790 29.630 0.00 0.00 33.08 4.20
140 141 8.376889 TGAAATTTTGAGCAGTAATTTTTCCC 57.623 30.769 0.00 0.00 33.08 3.97
141 142 9.260002 TCTGAAATTTTGAGCAGTAATTTTTCC 57.740 29.630 0.00 0.00 33.08 3.13
145 146 9.985730 TGATTCTGAAATTTTGAGCAGTAATTT 57.014 25.926 0.00 0.00 34.98 1.82
147 148 9.582431 CATGATTCTGAAATTTTGAGCAGTAAT 57.418 29.630 0.00 0.00 0.00 1.89
148 149 8.030692 CCATGATTCTGAAATTTTGAGCAGTAA 58.969 33.333 0.00 0.00 0.00 2.24
149 150 7.177216 ACCATGATTCTGAAATTTTGAGCAGTA 59.823 33.333 0.00 0.00 0.00 2.74
150 151 6.014840 ACCATGATTCTGAAATTTTGAGCAGT 60.015 34.615 0.00 0.00 0.00 4.40
151 152 6.310467 CACCATGATTCTGAAATTTTGAGCAG 59.690 38.462 0.00 0.00 0.00 4.24
152 153 6.160684 CACCATGATTCTGAAATTTTGAGCA 58.839 36.000 0.00 0.00 0.00 4.26
153 154 5.579511 CCACCATGATTCTGAAATTTTGAGC 59.420 40.000 0.00 0.00 0.00 4.26
154 155 6.071221 TCCCACCATGATTCTGAAATTTTGAG 60.071 38.462 0.00 0.00 0.00 3.02
155 156 5.779260 TCCCACCATGATTCTGAAATTTTGA 59.221 36.000 0.00 0.00 0.00 2.69
156 157 6.040209 TCCCACCATGATTCTGAAATTTTG 57.960 37.500 0.00 0.00 0.00 2.44
157 158 5.337813 GCTCCCACCATGATTCTGAAATTTT 60.338 40.000 0.00 0.00 0.00 1.82
158 159 4.161001 GCTCCCACCATGATTCTGAAATTT 59.839 41.667 0.00 0.00 0.00 1.82
159 160 3.703052 GCTCCCACCATGATTCTGAAATT 59.297 43.478 0.00 0.00 0.00 1.82
160 161 3.294214 GCTCCCACCATGATTCTGAAAT 58.706 45.455 0.00 0.00 0.00 2.17
161 162 2.041485 TGCTCCCACCATGATTCTGAAA 59.959 45.455 0.00 0.00 0.00 2.69
162 163 1.634973 TGCTCCCACCATGATTCTGAA 59.365 47.619 0.00 0.00 0.00 3.02
163 164 1.288188 TGCTCCCACCATGATTCTGA 58.712 50.000 0.00 0.00 0.00 3.27
164 165 2.359981 ATGCTCCCACCATGATTCTG 57.640 50.000 0.00 0.00 0.00 3.02
165 166 4.736611 ATTATGCTCCCACCATGATTCT 57.263 40.909 0.00 0.00 0.00 2.40
166 167 4.828939 TCAATTATGCTCCCACCATGATTC 59.171 41.667 0.00 0.00 29.66 2.52
167 168 4.586001 GTCAATTATGCTCCCACCATGATT 59.414 41.667 0.00 0.00 31.51 2.57
168 169 4.147321 GTCAATTATGCTCCCACCATGAT 58.853 43.478 0.00 0.00 0.00 2.45
172 173 2.575735 TCTGTCAATTATGCTCCCACCA 59.424 45.455 0.00 0.00 0.00 4.17
193 194 1.475169 TACTGCTGCTGCCACAGAGT 61.475 55.000 21.33 11.35 40.25 3.24
200 201 3.130160 GGTGCTACTGCTGCTGCC 61.130 66.667 13.47 0.00 40.48 4.85
241 242 1.318380 GATCCCTTCCTCCCTCCCA 59.682 63.158 0.00 0.00 0.00 4.37
244 245 0.398664 TTCGGATCCCTTCCTCCCTC 60.399 60.000 6.06 0.00 42.99 4.30
245 246 0.269173 ATTCGGATCCCTTCCTCCCT 59.731 55.000 6.06 0.00 42.99 4.20
246 247 1.072489 GAATTCGGATCCCTTCCTCCC 59.928 57.143 6.06 0.00 42.99 4.30
247 248 1.768870 TGAATTCGGATCCCTTCCTCC 59.231 52.381 6.06 0.00 42.99 4.30
248 249 2.170607 TGTGAATTCGGATCCCTTCCTC 59.829 50.000 6.06 4.47 42.99 3.71
403 435 1.184431 CTCCTCTCTGCTTCTCTGCA 58.816 55.000 0.00 0.00 41.05 4.41
452 484 3.264706 TGTACTGTCAGCTACTCCTCTCT 59.735 47.826 0.00 0.00 0.00 3.10
453 485 3.611970 TGTACTGTCAGCTACTCCTCTC 58.388 50.000 0.00 0.00 0.00 3.20
454 486 3.616219 CTGTACTGTCAGCTACTCCTCT 58.384 50.000 0.00 0.00 0.00 3.69
470 502 0.171455 CTGTCCCGTCTCAGCTGTAC 59.829 60.000 14.67 12.29 0.00 2.90
512 544 1.154221 ACGGGATAGAGGGGAGCTC 59.846 63.158 4.71 4.71 0.00 4.09
513 545 1.152440 CACGGGATAGAGGGGAGCT 60.152 63.158 0.00 0.00 0.00 4.09
514 546 2.210711 CCACGGGATAGAGGGGAGC 61.211 68.421 0.00 0.00 0.00 4.70
517 549 1.534235 CTCCCACGGGATAGAGGGG 60.534 68.421 4.97 0.00 44.24 4.79
533 574 3.133946 GCCGATCTGGGTCTCCTC 58.866 66.667 5.87 0.00 38.63 3.71
648 714 1.550524 TCTCTTTCACCACATCTCGGG 59.449 52.381 0.00 0.00 0.00 5.14
763 841 2.026905 GCTACTGGTCTCCTCCTCCTG 61.027 61.905 0.00 0.00 0.00 3.86
773 851 2.369001 GGGGGAGGCTACTGGTCT 59.631 66.667 0.00 0.00 0.00 3.85
800 883 2.556622 GCGAGGAGGAAAAACAATTGGA 59.443 45.455 10.83 0.00 0.00 3.53
812 895 5.992340 CAAGATTACTTACCGCGAGGAGGA 61.992 50.000 13.83 0.00 44.36 3.71
817 900 1.859080 GCCAAGATTACTTACCGCGAG 59.141 52.381 8.23 0.00 34.70 5.03
818 901 1.479323 AGCCAAGATTACTTACCGCGA 59.521 47.619 8.23 0.00 34.70 5.87
821 904 4.442706 ACATCAGCCAAGATTACTTACCG 58.557 43.478 0.00 0.00 34.70 4.02
838 923 5.068460 ACCGGATTGAAACAAGAAAACATCA 59.932 36.000 9.46 0.00 0.00 3.07
861 946 4.447290 ACCAACCAAAATAAACCAAGCAC 58.553 39.130 0.00 0.00 0.00 4.40
864 949 5.432645 ACCAACCAACCAAAATAAACCAAG 58.567 37.500 0.00 0.00 0.00 3.61
867 952 5.186942 ACAACCAACCAACCAAAATAAACC 58.813 37.500 0.00 0.00 0.00 3.27
868 953 6.745159 AACAACCAACCAACCAAAATAAAC 57.255 33.333 0.00 0.00 0.00 2.01
872 957 3.441922 GCAAACAACCAACCAACCAAAAT 59.558 39.130 0.00 0.00 0.00 1.82
876 961 0.108615 CGCAAACAACCAACCAACCA 60.109 50.000 0.00 0.00 0.00 3.67
877 962 0.173708 TCGCAAACAACCAACCAACC 59.826 50.000 0.00 0.00 0.00 3.77
878 963 1.135228 ACTCGCAAACAACCAACCAAC 60.135 47.619 0.00 0.00 0.00 3.77
880 965 1.178276 AACTCGCAAACAACCAACCA 58.822 45.000 0.00 0.00 0.00 3.67
882 967 3.145212 AGAAACTCGCAAACAACCAAC 57.855 42.857 0.00 0.00 0.00 3.77
884 969 3.428316 GGAAAGAAACTCGCAAACAACCA 60.428 43.478 0.00 0.00 0.00 3.67
885 970 3.113322 GGAAAGAAACTCGCAAACAACC 58.887 45.455 0.00 0.00 0.00 3.77
886 971 2.781646 CGGAAAGAAACTCGCAAACAAC 59.218 45.455 0.00 0.00 0.00 3.32
889 974 1.395670 GCGGAAAGAAACTCGCAAAC 58.604 50.000 0.00 0.00 46.33 2.93
890 975 3.837669 GCGGAAAGAAACTCGCAAA 57.162 47.368 0.00 0.00 46.33 3.68
895 980 0.440371 CGAGCAGCGGAAAGAAACTC 59.560 55.000 0.00 0.00 36.03 3.01
896 981 0.033504 TCGAGCAGCGGAAAGAAACT 59.966 50.000 0.00 0.00 41.33 2.66
897 982 1.079503 ATCGAGCAGCGGAAAGAAAC 58.920 50.000 0.00 0.00 41.33 2.78
899 984 1.464608 CAAATCGAGCAGCGGAAAGAA 59.535 47.619 0.00 0.00 41.33 2.52
900 985 1.078709 CAAATCGAGCAGCGGAAAGA 58.921 50.000 0.00 0.00 41.33 2.52
901 986 0.798776 ACAAATCGAGCAGCGGAAAG 59.201 50.000 0.00 0.00 41.33 2.62
902 987 1.234821 AACAAATCGAGCAGCGGAAA 58.765 45.000 0.00 0.00 41.33 3.13
903 988 1.069296 CAAACAAATCGAGCAGCGGAA 60.069 47.619 0.00 0.00 41.33 4.30
904 989 0.516877 CAAACAAATCGAGCAGCGGA 59.483 50.000 0.00 0.00 41.33 5.54
905 990 0.238289 ACAAACAAATCGAGCAGCGG 59.762 50.000 0.00 0.00 41.33 5.52
906 991 2.036556 AACAAACAAATCGAGCAGCG 57.963 45.000 0.00 0.00 42.69 5.18
907 992 3.371168 TCAAACAAACAAATCGAGCAGC 58.629 40.909 0.00 0.00 0.00 5.25
908 993 5.341462 CAGATCAAACAAACAAATCGAGCAG 59.659 40.000 0.00 0.00 0.00 4.24
909 994 5.008514 TCAGATCAAACAAACAAATCGAGCA 59.991 36.000 0.00 0.00 0.00 4.26
910 995 5.451908 TCAGATCAAACAAACAAATCGAGC 58.548 37.500 0.00 0.00 0.00 5.03
911 996 8.511465 AATTCAGATCAAACAAACAAATCGAG 57.489 30.769 0.00 0.00 0.00 4.04
966 1070 2.373502 CTCCCTCTCCCTTTTGACTGTT 59.626 50.000 0.00 0.00 0.00 3.16
967 1071 1.981495 CTCCCTCTCCCTTTTGACTGT 59.019 52.381 0.00 0.00 0.00 3.55
969 1073 2.545810 CTCTCCCTCTCCCTTTTGACT 58.454 52.381 0.00 0.00 0.00 3.41
970 1074 1.557371 CCTCTCCCTCTCCCTTTTGAC 59.443 57.143 0.00 0.00 0.00 3.18
971 1075 1.555765 CCCTCTCCCTCTCCCTTTTGA 60.556 57.143 0.00 0.00 0.00 2.69
972 1076 0.915364 CCCTCTCCCTCTCCCTTTTG 59.085 60.000 0.00 0.00 0.00 2.44
973 1077 0.253394 CCCCTCTCCCTCTCCCTTTT 60.253 60.000 0.00 0.00 0.00 2.27
974 1078 1.398234 CCCCTCTCCCTCTCCCTTT 59.602 63.158 0.00 0.00 0.00 3.11
976 1080 3.039526 CCCCCTCTCCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
978 1082 4.095400 TGCCCCCTCTCCCTCTCC 62.095 72.222 0.00 0.00 0.00 3.71
979 1083 2.325101 ATCTGCCCCCTCTCCCTCTC 62.325 65.000 0.00 0.00 0.00 3.20
982 1086 1.983035 ATGATCTGCCCCCTCTCCCT 61.983 60.000 0.00 0.00 0.00 4.20
983 1087 1.463018 ATGATCTGCCCCCTCTCCC 60.463 63.158 0.00 0.00 0.00 4.30
984 1088 1.759881 CATGATCTGCCCCCTCTCC 59.240 63.158 0.00 0.00 0.00 3.71
985 1089 1.759881 CCATGATCTGCCCCCTCTC 59.240 63.158 0.00 0.00 0.00 3.20
986 1090 2.459086 GCCATGATCTGCCCCCTCT 61.459 63.158 0.00 0.00 0.00 3.69
1124 1244 0.837940 GTAGGTAAGCAGGGGAAGGG 59.162 60.000 0.00 0.00 0.00 3.95
1125 1245 1.880941 AGTAGGTAAGCAGGGGAAGG 58.119 55.000 0.00 0.00 0.00 3.46
1126 1246 2.681097 GCAAGTAGGTAAGCAGGGGAAG 60.681 54.545 0.00 0.00 0.00 3.46
1127 1247 1.280998 GCAAGTAGGTAAGCAGGGGAA 59.719 52.381 0.00 0.00 0.00 3.97
1128 1248 0.909623 GCAAGTAGGTAAGCAGGGGA 59.090 55.000 0.00 0.00 0.00 4.81
1162 1282 2.679349 GCTGGCTAGTGAGGAAAGAAGG 60.679 54.545 0.00 0.00 0.00 3.46
1227 1415 7.383361 GTCGAAGAAATTGCGAAAATAATTGG 58.617 34.615 0.00 0.00 39.69 3.16
1296 1485 5.056480 CACATGAGCAAGGGAAATACGATA 58.944 41.667 0.00 0.00 0.00 2.92
1297 1486 3.879295 CACATGAGCAAGGGAAATACGAT 59.121 43.478 0.00 0.00 0.00 3.73
1298 1487 3.270027 CACATGAGCAAGGGAAATACGA 58.730 45.455 0.00 0.00 0.00 3.43
1299 1488 2.355756 CCACATGAGCAAGGGAAATACG 59.644 50.000 0.00 0.00 0.00 3.06
1300 1489 3.356290 ACCACATGAGCAAGGGAAATAC 58.644 45.455 0.00 0.00 0.00 1.89
1434 1623 3.687847 CATGGAATGGGTGGGAACA 57.312 52.632 0.00 0.00 41.79 3.18
1565 1761 2.479656 CAGCAAAGCAGAGAGACTTGTC 59.520 50.000 0.00 0.00 0.00 3.18
1802 2031 0.249120 TGGCATAGTCACTGAACCGG 59.751 55.000 0.00 0.00 0.00 5.28
2038 2298 7.395190 TCTAATGTCAAGGACCATTCAATTG 57.605 36.000 0.00 0.00 0.00 2.32
2042 2302 6.126863 AGTTCTAATGTCAAGGACCATTCA 57.873 37.500 0.00 0.00 0.00 2.57
2084 2344 8.824781 CGAGATTCATTACTCAGACATTCATTT 58.175 33.333 0.00 0.00 33.86 2.32
2085 2345 8.200120 TCGAGATTCATTACTCAGACATTCATT 58.800 33.333 0.00 0.00 33.86 2.57
2092 2352 9.601971 GTAGTAATCGAGATTCATTACTCAGAC 57.398 37.037 9.51 1.61 42.37 3.51
2109 2369 3.977427 TGCAGCCTACATGTAGTAATCG 58.023 45.455 27.07 14.89 30.92 3.34
2115 2375 2.674852 CACAACTGCAGCCTACATGTAG 59.325 50.000 23.58 23.58 36.57 2.74
2134 2394 2.929398 CAAGTTTGAACCCAAAGCACAC 59.071 45.455 0.00 0.00 42.37 3.82
2227 2515 1.136891 GGTTGGGCATGTATGGAAAGC 59.863 52.381 0.00 0.00 0.00 3.51
2233 2521 6.036577 ACTTAAAAAGGTTGGGCATGTATG 57.963 37.500 0.00 0.00 0.00 2.39
2396 2686 3.665745 AAATGGATGTTTCAGCACACC 57.334 42.857 0.00 0.00 0.00 4.16
2397 2687 4.082571 AGCTAAATGGATGTTTCAGCACAC 60.083 41.667 0.00 0.00 0.00 3.82
2438 2728 4.534103 ACCCAAGACTAGAAGATTCAAGCT 59.466 41.667 0.00 0.00 0.00 3.74
2439 2729 4.633565 CACCCAAGACTAGAAGATTCAAGC 59.366 45.833 0.00 0.00 0.00 4.01
2440 2730 5.641209 CACACCCAAGACTAGAAGATTCAAG 59.359 44.000 0.00 0.00 0.00 3.02
2441 2731 5.551233 CACACCCAAGACTAGAAGATTCAA 58.449 41.667 0.00 0.00 0.00 2.69
2442 2732 4.563580 GCACACCCAAGACTAGAAGATTCA 60.564 45.833 0.00 0.00 0.00 2.57
2443 2733 3.935828 GCACACCCAAGACTAGAAGATTC 59.064 47.826 0.00 0.00 0.00 2.52
2444 2734 3.584848 AGCACACCCAAGACTAGAAGATT 59.415 43.478 0.00 0.00 0.00 2.40
2445 2735 3.055530 CAGCACACCCAAGACTAGAAGAT 60.056 47.826 0.00 0.00 0.00 2.40
2446 2736 2.300152 CAGCACACCCAAGACTAGAAGA 59.700 50.000 0.00 0.00 0.00 2.87
2447 2737 2.300152 TCAGCACACCCAAGACTAGAAG 59.700 50.000 0.00 0.00 0.00 2.85
2448 2738 2.325484 TCAGCACACCCAAGACTAGAA 58.675 47.619 0.00 0.00 0.00 2.10
2449 2739 2.009681 TCAGCACACCCAAGACTAGA 57.990 50.000 0.00 0.00 0.00 2.43
2450 2740 2.808543 GTTTCAGCACACCCAAGACTAG 59.191 50.000 0.00 0.00 0.00 2.57
2451 2741 2.171659 TGTTTCAGCACACCCAAGACTA 59.828 45.455 0.00 0.00 0.00 2.59
2452 2742 1.064758 TGTTTCAGCACACCCAAGACT 60.065 47.619 0.00 0.00 0.00 3.24
2453 2743 1.388547 TGTTTCAGCACACCCAAGAC 58.611 50.000 0.00 0.00 0.00 3.01
2454 2744 2.229792 GATGTTTCAGCACACCCAAGA 58.770 47.619 0.00 0.00 0.00 3.02
2455 2745 1.270550 GGATGTTTCAGCACACCCAAG 59.729 52.381 0.00 0.00 0.00 3.61
2456 2746 1.327303 GGATGTTTCAGCACACCCAA 58.673 50.000 0.00 0.00 0.00 4.12
2457 2747 0.184692 TGGATGTTTCAGCACACCCA 59.815 50.000 0.00 0.00 0.00 4.51
2458 2748 1.549203 ATGGATGTTTCAGCACACCC 58.451 50.000 0.00 0.00 0.00 4.61
2459 2749 3.665745 AAATGGATGTTTCAGCACACC 57.334 42.857 0.00 0.00 0.00 4.16
2460 2750 4.082571 AGCTAAATGGATGTTTCAGCACAC 60.083 41.667 0.00 0.00 0.00 3.82
2461 2751 4.081406 AGCTAAATGGATGTTTCAGCACA 58.919 39.130 0.00 0.00 0.00 4.57
2462 2752 4.708726 AGCTAAATGGATGTTTCAGCAC 57.291 40.909 0.00 0.00 0.00 4.40
2463 2753 7.408756 AATAAGCTAAATGGATGTTTCAGCA 57.591 32.000 0.00 0.00 0.00 4.41
2464 2754 9.971922 AATAATAAGCTAAATGGATGTTTCAGC 57.028 29.630 0.00 0.00 0.00 4.26
2469 2759 9.533253 GCACAAATAATAAGCTAAATGGATGTT 57.467 29.630 0.00 0.00 0.00 2.71
2470 2760 8.143835 GGCACAAATAATAAGCTAAATGGATGT 58.856 33.333 0.00 0.00 0.00 3.06
2471 2761 8.362639 AGGCACAAATAATAAGCTAAATGGATG 58.637 33.333 0.00 0.00 0.00 3.51
2472 2762 8.362639 CAGGCACAAATAATAAGCTAAATGGAT 58.637 33.333 0.00 0.00 0.00 3.41
2473 2763 7.684187 GCAGGCACAAATAATAAGCTAAATGGA 60.684 37.037 0.00 0.00 0.00 3.41
2474 2764 6.421801 GCAGGCACAAATAATAAGCTAAATGG 59.578 38.462 0.00 0.00 0.00 3.16
2475 2765 6.979817 TGCAGGCACAAATAATAAGCTAAATG 59.020 34.615 0.00 0.00 0.00 2.32
2476 2766 7.111247 TGCAGGCACAAATAATAAGCTAAAT 57.889 32.000 0.00 0.00 0.00 1.40
2477 2767 6.522625 TGCAGGCACAAATAATAAGCTAAA 57.477 33.333 0.00 0.00 0.00 1.85
2478 2768 6.522625 TTGCAGGCACAAATAATAAGCTAA 57.477 33.333 0.00 0.00 0.00 3.09
2479 2769 5.450412 GCTTGCAGGCACAAATAATAAGCTA 60.450 40.000 16.98 0.00 36.15 3.32
2480 2770 4.678840 GCTTGCAGGCACAAATAATAAGCT 60.679 41.667 16.98 0.00 36.15 3.74
2481 2771 3.553105 GCTTGCAGGCACAAATAATAAGC 59.447 43.478 16.98 0.00 0.00 3.09
2482 2772 5.002464 AGCTTGCAGGCACAAATAATAAG 57.998 39.130 23.85 0.00 34.17 1.73
2483 2773 5.047448 TCAAGCTTGCAGGCACAAATAATAA 60.047 36.000 23.85 0.00 34.17 1.40
2484 2774 4.462132 TCAAGCTTGCAGGCACAAATAATA 59.538 37.500 23.85 0.00 34.17 0.98
2485 2775 3.258872 TCAAGCTTGCAGGCACAAATAAT 59.741 39.130 23.85 0.00 34.17 1.28
2486 2776 2.627221 TCAAGCTTGCAGGCACAAATAA 59.373 40.909 23.85 0.00 34.17 1.40
2487 2777 2.237643 TCAAGCTTGCAGGCACAAATA 58.762 42.857 23.85 0.00 34.17 1.40
2488 2778 1.042229 TCAAGCTTGCAGGCACAAAT 58.958 45.000 23.85 0.00 34.17 2.32
2489 2779 0.822811 TTCAAGCTTGCAGGCACAAA 59.177 45.000 23.85 10.34 34.17 2.83
2490 2780 1.000060 GATTCAAGCTTGCAGGCACAA 60.000 47.619 23.85 12.11 34.17 3.33
2491 2781 0.599558 GATTCAAGCTTGCAGGCACA 59.400 50.000 23.85 2.75 34.17 4.57
2492 2782 0.886563 AGATTCAAGCTTGCAGGCAC 59.113 50.000 23.85 9.19 34.17 5.01
2493 2783 1.542915 GAAGATTCAAGCTTGCAGGCA 59.457 47.619 23.85 1.78 34.17 4.75
2494 2784 1.817447 AGAAGATTCAAGCTTGCAGGC 59.183 47.619 21.99 13.82 0.00 4.85
2495 2785 4.260170 ACTAGAAGATTCAAGCTTGCAGG 58.740 43.478 21.99 0.00 0.00 4.85
2496 2786 5.177326 AGACTAGAAGATTCAAGCTTGCAG 58.823 41.667 21.99 9.77 0.00 4.41
2497 2787 5.157940 AGACTAGAAGATTCAAGCTTGCA 57.842 39.130 21.99 11.97 0.00 4.08
2498 2788 5.163774 CCAAGACTAGAAGATTCAAGCTTGC 60.164 44.000 21.99 8.01 31.46 4.01
2499 2789 5.936956 ACCAAGACTAGAAGATTCAAGCTTG 59.063 40.000 20.81 20.81 0.00 4.01
2500 2790 5.936956 CACCAAGACTAGAAGATTCAAGCTT 59.063 40.000 0.00 0.00 0.00 3.74
2524 2814 4.156556 TGAGCTAAATGGATGTTTCAGCAC 59.843 41.667 0.00 0.00 0.00 4.40
2546 2836 6.524586 GCTAAATGGATGTTTTCTTCGAACTG 59.475 38.462 0.00 0.00 0.00 3.16
2587 2877 2.682856 TCCGTTGAAGCTAAATGGATGC 59.317 45.455 15.73 0.00 37.71 3.91
2652 3012 4.027572 TGCAACTGACTAAACAAACTGC 57.972 40.909 0.00 0.00 0.00 4.40
2705 3065 6.655078 AGATAAACAAATGAACTGTTGCCT 57.345 33.333 0.00 0.00 37.10 4.75
2738 3098 5.591099 TCAAAGAAGCCTTTTCATGTTCAC 58.409 37.500 0.00 0.00 40.42 3.18
2779 3141 6.980051 ATGGATAAAGGAACTCACGTAAAC 57.020 37.500 0.00 0.00 38.49 2.01
2875 3237 9.539825 CAATCTCTTAGTACTGTCAAGCATTAT 57.460 33.333 5.39 0.00 0.00 1.28
2984 3346 4.026475 GCGCATATAGACTCGAATAATGCC 60.026 45.833 0.30 0.00 0.00 4.40
2986 3348 6.632171 TTGCGCATATAGACTCGAATAATG 57.368 37.500 12.75 0.00 0.00 1.90
2991 3353 4.177783 TGTTTTGCGCATATAGACTCGAA 58.822 39.130 12.75 0.00 0.00 3.71
3177 3554 3.547746 GGTAATTAAGTTGCCGATGGGA 58.452 45.455 0.00 0.00 32.72 4.37
3178 3555 2.621526 GGGTAATTAAGTTGCCGATGGG 59.378 50.000 0.00 0.00 42.93 4.00
3184 3561 2.735151 AGCCAGGGTAATTAAGTTGCC 58.265 47.619 0.00 0.00 41.43 4.52
3235 3612 5.238868 GGGTTAGTTTTCTTCCAGTCTGAAC 59.761 44.000 0.00 0.00 0.00 3.18
3319 3696 6.100004 GCTAACTACAGTCATACAGAAAGCA 58.900 40.000 0.00 0.00 0.00 3.91
3343 3720 8.581057 ACATTCACTAAATGATAAGCTCTACG 57.419 34.615 4.86 0.00 46.54 3.51
3348 3725 8.798859 ACAAGACATTCACTAAATGATAAGCT 57.201 30.769 4.86 0.00 46.54 3.74
3393 3770 4.337274 CAGAGAGCAATGAATACCATGCAA 59.663 41.667 0.00 0.00 35.24 4.08
3400 3777 6.256757 GTGGAGTTACAGAGAGCAATGAATAC 59.743 42.308 0.00 0.00 0.00 1.89
3412 3789 4.962155 ACTTTTCCAGTGGAGTTACAGAG 58.038 43.478 12.67 4.45 32.83 3.35
3447 3824 0.962356 AGAGTCAAGCAAATGCCCCG 60.962 55.000 0.94 0.00 43.38 5.73
3452 3829 6.072286 AGGTGATAAACAGAGTCAAGCAAATG 60.072 38.462 0.00 0.00 0.00 2.32
3633 4010 4.919754 GCATTGTTCTTGAACTAGCCAAAG 59.080 41.667 13.65 0.00 0.00 2.77
3701 4078 0.175302 CCAATGCTCGACTCAGCTCT 59.825 55.000 0.00 0.00 40.39 4.09
3705 4082 2.886862 AGATCCAATGCTCGACTCAG 57.113 50.000 0.00 0.00 0.00 3.35
3709 4086 4.437930 CCTTTTGAAGATCCAATGCTCGAC 60.438 45.833 0.00 0.00 0.00 4.20
3712 4089 3.766051 ACCCTTTTGAAGATCCAATGCTC 59.234 43.478 0.00 0.00 0.00 4.26
3724 4101 4.065088 CTGTGATCGAAGACCCTTTTGAA 58.935 43.478 0.00 0.00 42.51 2.69
3777 4154 0.547471 TCTGGCCATCACTTCCCTCA 60.547 55.000 5.51 0.00 0.00 3.86
3778 4155 0.179936 CTCTGGCCATCACTTCCCTC 59.820 60.000 5.51 0.00 0.00 4.30
4024 4404 3.052109 TCTCCTCTTGGCACTCCCTATAA 60.052 47.826 0.00 0.00 0.00 0.98
4232 4612 5.921408 GGTCTATGATAGTTGGACATTCGAC 59.079 44.000 0.00 0.00 0.00 4.20
4234 4614 5.842907 TGGTCTATGATAGTTGGACATTCG 58.157 41.667 0.00 0.00 0.00 3.34
4492 4872 2.860628 CGCAGCGCTATCCGTGAAC 61.861 63.158 10.99 0.00 39.71 3.18
4591 4971 0.108804 TCATCACGCCTTCCTCGAAC 60.109 55.000 0.00 0.00 0.00 3.95
4615 4995 0.667993 CATCGTCTCTCAGAGCCTCC 59.332 60.000 0.00 0.00 0.00 4.30
4648 5028 3.573772 CTTGTCCGGCGCTCTCACA 62.574 63.158 7.64 2.38 0.00 3.58
4694 5074 2.525381 CATCCCCCTCCCTCTCCG 60.525 72.222 0.00 0.00 0.00 4.63
4798 5178 1.558756 CTCTGCCTGGTCTTCCTGATT 59.441 52.381 0.00 0.00 35.11 2.57
4918 5298 2.505557 GCATTGCGCTTCACCAGC 60.506 61.111 9.73 0.00 46.31 4.85
4920 5300 3.736100 CGGCATTGCGCTTCACCA 61.736 61.111 9.73 0.00 41.91 4.17
4921 5301 3.430862 TCGGCATTGCGCTTCACC 61.431 61.111 9.73 4.35 41.91 4.02
4923 5303 3.787676 CGTCGGCATTGCGCTTCA 61.788 61.111 9.73 0.00 41.91 3.02
4986 5430 1.922570 ACACGACGATATTCACAGGC 58.077 50.000 0.00 0.00 0.00 4.85
4987 5431 4.855531 TCATACACGACGATATTCACAGG 58.144 43.478 0.00 0.00 0.00 4.00
5000 5450 5.507482 GCTAGGCTTCATAGTTCATACACGA 60.507 44.000 0.00 0.00 0.00 4.35
5011 5461 3.126831 CGGTTTCAGCTAGGCTTCATAG 58.873 50.000 0.00 0.00 36.40 2.23
5302 5767 3.740141 GCTGTACACCGTAGCATGGTAAT 60.740 47.826 6.12 0.00 34.66 1.89
5303 5768 2.417651 GCTGTACACCGTAGCATGGTAA 60.418 50.000 6.12 0.00 34.66 2.85
5304 5769 1.135527 GCTGTACACCGTAGCATGGTA 59.864 52.381 0.00 0.00 34.66 3.25
5305 5770 0.108329 GCTGTACACCGTAGCATGGT 60.108 55.000 1.62 1.62 38.21 3.55
5306 5771 0.810031 GGCTGTACACCGTAGCATGG 60.810 60.000 6.40 0.00 39.15 3.66
5307 5772 0.810031 GGGCTGTACACCGTAGCATG 60.810 60.000 6.40 0.00 39.15 4.06
5308 5773 0.976073 AGGGCTGTACACCGTAGCAT 60.976 55.000 6.40 0.00 39.15 3.79
5332 5810 3.259314 TGGACCACCAGCCATGCT 61.259 61.111 0.00 0.00 41.77 3.79
5410 5892 0.392336 GGATGCAAACAACTGCCCAA 59.608 50.000 0.00 0.00 41.90 4.12
5512 5994 0.865111 TTTCTGGCGTTGTGTGATCG 59.135 50.000 0.00 0.00 0.00 3.69
5551 6033 8.572151 CGTTACGCCAATATTTTGTTTTAGAAG 58.428 33.333 0.00 0.00 0.00 2.85
5572 6054 3.117346 GCTGAATGTTGCGTTTTCGTTAC 59.883 43.478 0.00 0.00 46.03 2.50
5683 6166 6.296803 AGTCTTCTTTCGATAAAGGGTGTTT 58.703 36.000 0.00 0.00 42.09 2.83
5686 6169 8.494016 AAATAGTCTTCTTTCGATAAAGGGTG 57.506 34.615 0.00 0.00 42.09 4.61
5758 6244 3.268103 AAAACATCGCCCCTCCGCT 62.268 57.895 0.00 0.00 0.00 5.52
5777 6263 7.052565 GCACATATTGCCATAATTTGCATAC 57.947 36.000 0.00 0.00 46.63 2.39
5812 6298 7.504574 TGGTAAATTATGTAGTCGAGAGGATGA 59.495 37.037 0.00 0.00 0.00 2.92
5825 6311 3.557475 CGCCCGGGATGGTAAATTATGTA 60.557 47.826 29.31 0.00 35.15 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.