Multiple sequence alignment - TraesCS4D01G360900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G360900 chr4D 100.000 4808 0 0 1 4808 507690164 507685357 0.000000e+00 8879.0
1 TraesCS4D01G360900 chr4D 85.688 552 53 13 1115 1656 507716949 507716414 4.200000e-155 558.0
2 TraesCS4D01G360900 chr4D 90.062 322 26 3 1095 1410 507675570 507675249 3.460000e-111 412.0
3 TraesCS4D01G360900 chr4D 82.578 419 65 5 1096 1507 507724453 507724036 3.540000e-96 363.0
4 TraesCS4D01G360900 chr4D 87.234 94 12 0 2873 2966 507673608 507673515 1.830000e-19 108.0
5 TraesCS4D01G360900 chr4D 90.244 41 4 0 2028 2068 272888497 272888537 2.000000e-03 54.7
6 TraesCS4D01G360900 chr4B 92.982 1838 85 19 2730 4562 656264462 656266260 0.000000e+00 2639.0
7 TraesCS4D01G360900 chr4B 88.982 1434 84 28 1002 2368 656262461 656263887 0.000000e+00 1705.0
8 TraesCS4D01G360900 chr4B 88.000 825 62 24 1005 1818 654089472 654090270 0.000000e+00 941.0
9 TraesCS4D01G360900 chr4B 86.455 849 77 14 97 924 656242550 656243381 0.000000e+00 896.0
10 TraesCS4D01G360900 chr4B 85.069 576 59 14 1096 1656 656159583 656160146 3.250000e-156 562.0
11 TraesCS4D01G360900 chr4B 94.332 247 14 0 2399 2645 656263881 656264127 3.510000e-101 379.0
12 TraesCS4D01G360900 chr4B 93.443 61 2 2 952 1010 656243384 656243444 6.630000e-14 89.8
13 TraesCS4D01G360900 chr4B 95.000 40 2 0 2034 2073 618426379 618426340 4.020000e-06 63.9
14 TraesCS4D01G360900 chr4B 94.286 35 2 0 2034 2068 418420011 418419977 2.000000e-03 54.7
15 TraesCS4D01G360900 chr5A 86.851 1232 89 31 668 1857 692848021 692846821 0.000000e+00 1310.0
16 TraesCS4D01G360900 chr5A 86.772 945 82 20 3567 4488 692845125 692844201 0.000000e+00 1013.0
17 TraesCS4D01G360900 chr5A 86.765 816 85 21 1005 1813 691792917 691793716 0.000000e+00 887.0
18 TraesCS4D01G360900 chr5A 85.876 793 66 19 2803 3571 692845859 692845089 0.000000e+00 802.0
19 TraesCS4D01G360900 chr5A 83.648 899 82 35 1007 1857 692783241 692782360 0.000000e+00 785.0
20 TraesCS4D01G360900 chr5A 83.010 824 81 23 1007 1818 692832829 692832053 0.000000e+00 691.0
21 TraesCS4D01G360900 chr5A 92.925 212 15 0 97 308 692853090 692852879 4.670000e-80 309.0
22 TraesCS4D01G360900 chr5A 85.551 263 33 3 2399 2661 692846146 692845889 2.210000e-68 270.0
23 TraesCS4D01G360900 chr5A 91.453 117 10 0 4567 4683 692834750 692834634 1.380000e-35 161.0
24 TraesCS4D01G360900 chr5A 97.059 34 1 0 2034 2067 558969581 558969548 1.870000e-04 58.4
25 TraesCS4D01G360900 chr6A 78.533 559 65 35 1118 1656 133807536 133807013 2.790000e-82 316.0
26 TraesCS4D01G360900 chr6A 100.000 40 0 0 4395 4434 609974295 609974334 1.860000e-09 75.0
27 TraesCS4D01G360900 chr6A 94.872 39 2 0 2034 2072 36403561 36403523 1.440000e-05 62.1
28 TraesCS4D01G360900 chr1B 83.133 166 23 3 3623 3784 666064917 666065081 3.880000e-31 147.0
29 TraesCS4D01G360900 chr7D 95.349 43 1 1 2735 2777 570645314 570645273 3.110000e-07 67.6
30 TraesCS4D01G360900 chr7D 97.436 39 1 0 2739 2777 629902187 629902225 3.110000e-07 67.6
31 TraesCS4D01G360900 chr2B 95.238 42 2 0 2739 2780 201368859 201368818 3.110000e-07 67.6
32 TraesCS4D01G360900 chr2B 94.595 37 2 0 2034 2070 509282666 509282702 1.870000e-04 58.4
33 TraesCS4D01G360900 chr7B 97.368 38 1 0 2740 2777 648164180 648164217 1.120000e-06 65.8
34 TraesCS4D01G360900 chr7A 95.122 41 2 0 2740 2780 700822169 700822209 1.120000e-06 65.8
35 TraesCS4D01G360900 chr6B 91.111 45 4 0 2739 2783 577456838 577456794 1.440000e-05 62.1
36 TraesCS4D01G360900 chr6B 97.143 35 1 0 2739 2773 137378938 137378904 5.200000e-05 60.2
37 TraesCS4D01G360900 chr4A 92.857 42 3 0 2028 2069 738719803 738719844 1.440000e-05 62.1
38 TraesCS4D01G360900 chr4A 94.737 38 2 0 2740 2777 353108803 353108840 5.200000e-05 60.2
39 TraesCS4D01G360900 chr1A 90.244 41 4 0 2028 2068 161032788 161032828 2.000000e-03 54.7
40 TraesCS4D01G360900 chr1D 100.000 28 0 0 4406 4433 474052436 474052463 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G360900 chr4D 507685357 507690164 4807 True 8879.000000 8879 100.000000 1 4808 1 chr4D.!!$R1 4807
1 TraesCS4D01G360900 chr4D 507716414 507716949 535 True 558.000000 558 85.688000 1115 1656 1 chr4D.!!$R2 541
2 TraesCS4D01G360900 chr4D 507673515 507675570 2055 True 260.000000 412 88.648000 1095 2966 2 chr4D.!!$R4 1871
3 TraesCS4D01G360900 chr4B 656262461 656266260 3799 False 1574.333333 2639 92.098667 1002 4562 3 chr4B.!!$F4 3560
4 TraesCS4D01G360900 chr4B 654089472 654090270 798 False 941.000000 941 88.000000 1005 1818 1 chr4B.!!$F1 813
5 TraesCS4D01G360900 chr4B 656159583 656160146 563 False 562.000000 562 85.069000 1096 1656 1 chr4B.!!$F2 560
6 TraesCS4D01G360900 chr4B 656242550 656243444 894 False 492.900000 896 89.949000 97 1010 2 chr4B.!!$F3 913
7 TraesCS4D01G360900 chr5A 691792917 691793716 799 False 887.000000 887 86.765000 1005 1813 1 chr5A.!!$F1 808
8 TraesCS4D01G360900 chr5A 692844201 692848021 3820 True 848.750000 1310 86.262500 668 4488 4 chr5A.!!$R5 3820
9 TraesCS4D01G360900 chr5A 692782360 692783241 881 True 785.000000 785 83.648000 1007 1857 1 chr5A.!!$R2 850
10 TraesCS4D01G360900 chr5A 692832053 692834750 2697 True 426.000000 691 87.231500 1007 4683 2 chr5A.!!$R4 3676
11 TraesCS4D01G360900 chr6A 133807013 133807536 523 True 316.000000 316 78.533000 1118 1656 1 chr6A.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.035630 AGGTGCTCCTGCTCAACATC 60.036 55.0 6.51 0.0 43.33 3.06 F
948 975 0.106469 ATAGAGAGAGGCGGCTGTGA 60.106 55.0 19.63 0.0 0.00 3.58 F
2672 4635 0.103390 TGTGTGACACGTACACCCTG 59.897 55.0 15.55 0.0 45.95 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 3336 0.885879 CCACTGAGCAGTACCACGTA 59.114 55.0 2.36 0.0 40.20 3.57 R
2708 4671 0.618458 TTCGGAAATGGTCAGGGGAG 59.382 55.0 0.00 0.0 0.00 4.30 R
4653 6911 0.733150 GCTGGACCGTAAGATTTGGC 59.267 55.0 0.00 0.0 43.02 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.670606 GCAGGCTTTGCGTATTCG 57.329 55.556 0.00 0.00 44.09 3.34
60 61 8.692110 AAAACTAATCACACATGCATACAATG 57.308 30.769 0.00 0.00 0.00 2.82
61 62 7.395190 AACTAATCACACATGCATACAATGT 57.605 32.000 0.00 0.00 31.25 2.71
62 63 7.395190 ACTAATCACACATGCATACAATGTT 57.605 32.000 0.00 0.00 29.25 2.71
63 64 7.829725 ACTAATCACACATGCATACAATGTTT 58.170 30.769 0.00 0.54 29.25 2.83
88 89 7.579761 TTTTGTGGCTGAATATATGCATACA 57.420 32.000 8.99 0.00 0.00 2.29
89 90 7.579761 TTTGTGGCTGAATATATGCATACAA 57.420 32.000 8.99 4.42 35.33 2.41
90 91 7.764141 TTGTGGCTGAATATATGCATACAAT 57.236 32.000 8.99 3.02 33.66 2.71
94 95 8.729756 GTGGCTGAATATATGCATACAATGTTA 58.270 33.333 8.99 0.00 0.00 2.41
95 96 8.729756 TGGCTGAATATATGCATACAATGTTAC 58.270 33.333 8.99 0.00 0.00 2.50
114 115 6.998338 TGTTACAATGTTGAATGTGCAAAAC 58.002 32.000 0.00 0.00 0.00 2.43
145 146 1.753073 GAAGAATGGGCTCATGTTGGG 59.247 52.381 0.00 0.00 33.18 4.12
163 164 5.070981 TGTTGGGAATTCATTTAGGTTGCAA 59.929 36.000 7.93 0.00 0.00 4.08
203 204 3.609853 TGATAGCCAGTTGGTGATTGAC 58.390 45.455 0.00 0.00 37.57 3.18
205 206 1.210155 GCCAGTTGGTGATTGACGC 59.790 57.895 0.00 0.00 37.57 5.19
213 214 0.041839 GGTGATTGACGCGATGATGC 60.042 55.000 15.93 0.00 0.00 3.91
243 244 5.804771 GGATCACTTTTTAGAAGGTGCTCCT 60.805 44.000 18.33 0.18 46.39 3.69
247 248 2.770164 TTTAGAAGGTGCTCCTGCTC 57.230 50.000 18.94 8.43 46.42 4.26
253 254 0.035630 AGGTGCTCCTGCTCAACATC 60.036 55.000 6.51 0.00 43.33 3.06
346 348 2.359900 GTTGCCTGACATCTAGTTGGG 58.640 52.381 5.80 0.00 0.00 4.12
355 357 5.462240 TGACATCTAGTTGGGATCATCTCT 58.538 41.667 5.80 0.00 0.00 3.10
366 368 3.165071 GGATCATCTCTTCCTCCTCCTC 58.835 54.545 0.00 0.00 0.00 3.71
372 374 0.992695 TCTTCCTCCTCCTCGTCTGA 59.007 55.000 0.00 0.00 0.00 3.27
391 393 0.390860 ATAGTGGCATGCCGAGAGAC 59.609 55.000 30.87 22.36 39.42 3.36
414 416 2.190578 CAATGACTCCCCTCCGGC 59.809 66.667 0.00 0.00 0.00 6.13
442 444 0.392998 CCTACGCCAAGGAGCACAAT 60.393 55.000 0.00 0.00 39.15 2.71
446 448 1.675641 GCCAAGGAGCACAATCGGT 60.676 57.895 0.00 0.00 0.00 4.69
465 467 1.550976 GTACTCCAGTGACCCCAAGAG 59.449 57.143 0.00 0.00 0.00 2.85
548 563 5.059404 GGTGATGAACCTGTACATTTTGG 57.941 43.478 0.00 0.00 46.55 3.28
550 565 3.509575 TGATGAACCTGTACATTTTGGGC 59.490 43.478 0.00 0.00 0.00 5.36
558 573 2.163412 TGTACATTTTGGGCTCGATTGC 59.837 45.455 0.00 0.00 0.00 3.56
560 575 1.617850 ACATTTTGGGCTCGATTGCAA 59.382 42.857 0.00 0.00 34.04 4.08
566 581 1.686052 TGGGCTCGATTGCAAAACTTT 59.314 42.857 1.71 0.00 34.04 2.66
567 582 2.887783 TGGGCTCGATTGCAAAACTTTA 59.112 40.909 1.71 0.00 34.04 1.85
568 583 3.509575 TGGGCTCGATTGCAAAACTTTAT 59.490 39.130 1.71 0.00 34.04 1.40
569 584 4.105486 GGGCTCGATTGCAAAACTTTATC 58.895 43.478 1.71 0.00 34.04 1.75
570 585 4.105486 GGCTCGATTGCAAAACTTTATCC 58.895 43.478 1.71 0.00 34.04 2.59
572 587 5.065988 GGCTCGATTGCAAAACTTTATCCTA 59.934 40.000 1.71 0.00 34.04 2.94
594 609 9.533831 TCCTAGATCTATGCTATGTTGTTATGA 57.466 33.333 2.11 0.00 0.00 2.15
623 650 7.855784 ATGTGATCTATGTAGATGGGTTGTA 57.144 36.000 7.25 0.00 42.79 2.41
637 664 2.031870 GGTTGTATGGATTTGGGAGGC 58.968 52.381 0.00 0.00 0.00 4.70
640 667 0.472471 GTATGGATTTGGGAGGCGGA 59.528 55.000 0.00 0.00 0.00 5.54
641 668 1.073923 GTATGGATTTGGGAGGCGGAT 59.926 52.381 0.00 0.00 0.00 4.18
642 669 1.444933 ATGGATTTGGGAGGCGGATA 58.555 50.000 0.00 0.00 0.00 2.59
646 673 2.154462 GATTTGGGAGGCGGATATGTG 58.846 52.381 0.00 0.00 0.00 3.21
647 674 1.208706 TTTGGGAGGCGGATATGTGA 58.791 50.000 0.00 0.00 0.00 3.58
648 675 0.758734 TTGGGAGGCGGATATGTGAG 59.241 55.000 0.00 0.00 0.00 3.51
649 676 1.121407 TGGGAGGCGGATATGTGAGG 61.121 60.000 0.00 0.00 0.00 3.86
650 677 1.674057 GGAGGCGGATATGTGAGGG 59.326 63.158 0.00 0.00 0.00 4.30
651 678 1.674057 GAGGCGGATATGTGAGGGG 59.326 63.158 0.00 0.00 0.00 4.79
652 679 1.831652 GAGGCGGATATGTGAGGGGG 61.832 65.000 0.00 0.00 0.00 5.40
653 680 2.147387 GGCGGATATGTGAGGGGGT 61.147 63.158 0.00 0.00 0.00 4.95
695 722 0.980423 TGGGTGATCGGTCATTGTCA 59.020 50.000 0.00 0.00 36.60 3.58
706 733 4.158209 TCGGTCATTGTCAACGGACTATAA 59.842 41.667 15.17 1.71 44.61 0.98
719 746 5.123936 ACGGACTATAAGGAGCCAAATTTC 58.876 41.667 0.00 0.00 0.00 2.17
803 830 0.177604 AGCAGCTGATGTAGTCCTGC 59.822 55.000 20.43 0.00 36.70 4.85
811 838 2.881352 GTAGTCCTGCACGCGCTC 60.881 66.667 5.73 0.00 39.64 5.03
846 873 4.782252 TTAAAAACGGTGAAGACGACTG 57.218 40.909 0.00 0.00 34.93 3.51
872 899 3.350219 AGTTTGTGGTCAGTCAACTGT 57.650 42.857 9.82 0.00 44.12 3.55
891 918 6.048732 ACTGTCCCAAATTTTGTTTTGAGT 57.951 33.333 8.26 1.55 38.58 3.41
927 954 3.458189 CGGTCTAGCTGGTCCAAAATAG 58.542 50.000 13.37 0.00 0.00 1.73
928 955 3.118738 CGGTCTAGCTGGTCCAAAATAGT 60.119 47.826 13.37 0.00 0.00 2.12
929 956 4.098960 CGGTCTAGCTGGTCCAAAATAGTA 59.901 45.833 13.37 0.00 0.00 1.82
932 959 7.379750 GGTCTAGCTGGTCCAAAATAGTATAG 58.620 42.308 8.45 0.00 0.00 1.31
933 960 7.232941 GGTCTAGCTGGTCCAAAATAGTATAGA 59.767 40.741 8.45 0.00 0.00 1.98
934 961 8.301002 GTCTAGCTGGTCCAAAATAGTATAGAG 58.699 40.741 0.00 0.00 0.00 2.43
935 962 8.225416 TCTAGCTGGTCCAAAATAGTATAGAGA 58.775 37.037 0.00 0.00 0.00 3.10
937 964 7.069986 AGCTGGTCCAAAATAGTATAGAGAGA 58.930 38.462 0.00 0.00 0.00 3.10
938 965 7.232534 AGCTGGTCCAAAATAGTATAGAGAGAG 59.767 40.741 0.00 0.00 0.00 3.20
939 966 7.524698 GCTGGTCCAAAATAGTATAGAGAGAGG 60.525 44.444 0.00 0.00 0.00 3.69
940 967 6.267928 TGGTCCAAAATAGTATAGAGAGAGGC 59.732 42.308 0.00 0.00 0.00 4.70
941 968 6.383415 GTCCAAAATAGTATAGAGAGAGGCG 58.617 44.000 0.00 0.00 0.00 5.52
943 970 5.164954 CAAAATAGTATAGAGAGAGGCGGC 58.835 45.833 0.00 0.00 0.00 6.53
944 971 4.310022 AATAGTATAGAGAGAGGCGGCT 57.690 45.455 13.09 13.09 0.00 5.52
945 972 1.904287 AGTATAGAGAGAGGCGGCTG 58.096 55.000 19.63 0.00 0.00 4.85
947 974 1.268352 GTATAGAGAGAGGCGGCTGTG 59.732 57.143 19.63 0.00 0.00 3.66
948 975 0.106469 ATAGAGAGAGGCGGCTGTGA 60.106 55.000 19.63 0.00 0.00 3.58
950 977 1.188219 AGAGAGAGGCGGCTGTGAAA 61.188 55.000 19.63 0.00 0.00 2.69
951 978 0.320771 GAGAGAGGCGGCTGTGAAAA 60.321 55.000 19.63 0.00 0.00 2.29
968 995 3.758554 TGAAAATAGGAGAAGCAACTGGC 59.241 43.478 0.00 0.00 45.30 4.85
1071 1993 2.405594 GCGACGACGAGAGAGCAT 59.594 61.111 12.29 0.00 42.66 3.79
1108 2041 1.834263 AGACTTTTCCTCCTCCGATGG 59.166 52.381 0.00 0.00 0.00 3.51
1467 2852 2.752238 CTGGTCCGGCTCGAGACT 60.752 66.667 18.75 0.00 33.39 3.24
1665 3336 1.227263 CGCCGGTAAGCTAGCATGT 60.227 57.895 18.83 4.05 0.00 3.21
1828 3615 3.243569 GCCAAGTGCGTATCATCTACTCT 60.244 47.826 0.00 0.00 0.00 3.24
1952 3798 5.740290 ATAAGTGGGGATATACTCAACGG 57.260 43.478 0.00 0.00 0.00 4.44
2015 3872 8.912988 TGTTTTTCTATGAAGTTGGACAAAGAT 58.087 29.630 0.00 0.00 0.00 2.40
2047 3904 5.775195 GGGGTTAAGGCAAATCTAATATGCT 59.225 40.000 0.00 0.00 39.94 3.79
2100 3984 4.508461 TGCATCACCTGAATTTCTTGTG 57.492 40.909 10.67 10.67 0.00 3.33
2161 4045 9.502145 CTGCATGTTAATTGTATGTTATTCGTT 57.498 29.630 0.00 0.00 0.00 3.85
2177 4061 2.358957 TCGTTGCTAGCTTAGGTCGTA 58.641 47.619 17.23 0.00 0.00 3.43
2231 4115 0.904865 TCTCGAGGGACATTGCTGGT 60.905 55.000 13.56 0.00 0.00 4.00
2252 4136 1.597027 CGCCAAAGAGGTCCACGTT 60.597 57.895 0.00 0.00 40.61 3.99
2255 4139 0.535102 CCAAAGAGGTCCACGTTGCT 60.535 55.000 9.01 0.00 0.00 3.91
2258 4142 2.673368 CAAAGAGGTCCACGTTGCTATC 59.327 50.000 2.38 0.00 0.00 2.08
2271 4155 3.374402 CTATCCGATCGGCGCCCT 61.374 66.667 29.62 8.70 39.11 5.19
2272 4156 3.633094 CTATCCGATCGGCGCCCTG 62.633 68.421 29.62 8.15 39.11 4.45
2303 4187 1.039233 GCACTACTGCCCATGCCAAT 61.039 55.000 0.00 0.00 37.45 3.16
2340 4224 6.904654 TCCCATGGTAATTACTTGGTACTACT 59.095 38.462 24.23 0.00 31.75 2.57
2354 4317 8.759782 ACTTGGTACTACTCTACAATTTAGCAT 58.240 33.333 0.00 0.00 0.00 3.79
2355 4318 9.250624 CTTGGTACTACTCTACAATTTAGCATC 57.749 37.037 0.00 0.00 0.00 3.91
2356 4319 8.301252 TGGTACTACTCTACAATTTAGCATCA 57.699 34.615 0.00 0.00 0.00 3.07
2357 4320 8.414003 TGGTACTACTCTACAATTTAGCATCAG 58.586 37.037 0.00 0.00 0.00 2.90
2358 4321 7.382759 GGTACTACTCTACAATTTAGCATCAGC 59.617 40.741 0.00 0.00 42.56 4.26
2359 4322 6.878317 ACTACTCTACAATTTAGCATCAGCA 58.122 36.000 0.00 0.00 45.49 4.41
2360 4323 7.331026 ACTACTCTACAATTTAGCATCAGCAA 58.669 34.615 0.00 0.00 45.49 3.91
2361 4324 6.428385 ACTCTACAATTTAGCATCAGCAAC 57.572 37.500 0.00 0.00 45.49 4.17
2362 4325 6.176183 ACTCTACAATTTAGCATCAGCAACT 58.824 36.000 0.00 0.00 45.49 3.16
2363 4326 6.656693 ACTCTACAATTTAGCATCAGCAACTT 59.343 34.615 0.00 0.00 45.49 2.66
2364 4327 7.076842 TCTACAATTTAGCATCAGCAACTTC 57.923 36.000 0.00 0.00 45.49 3.01
2365 4328 5.710513 ACAATTTAGCATCAGCAACTTCA 57.289 34.783 0.00 0.00 45.49 3.02
2366 4329 6.276832 ACAATTTAGCATCAGCAACTTCAT 57.723 33.333 0.00 0.00 45.49 2.57
2367 4330 6.694447 ACAATTTAGCATCAGCAACTTCATT 58.306 32.000 0.00 0.00 45.49 2.57
2368 4331 7.156673 ACAATTTAGCATCAGCAACTTCATTT 58.843 30.769 0.00 0.00 45.49 2.32
2369 4332 7.658575 ACAATTTAGCATCAGCAACTTCATTTT 59.341 29.630 0.00 0.00 45.49 1.82
2370 4333 8.500773 CAATTTAGCATCAGCAACTTCATTTTT 58.499 29.630 0.00 0.00 45.49 1.94
2389 4352 3.642938 TTGCGGGTAATCAGCAACT 57.357 47.368 0.00 0.00 44.66 3.16
2390 4353 1.904287 TTGCGGGTAATCAGCAACTT 58.096 45.000 0.00 0.00 44.66 2.66
2391 4354 1.448985 TGCGGGTAATCAGCAACTTC 58.551 50.000 0.00 0.00 38.01 3.01
2392 4355 1.271108 TGCGGGTAATCAGCAACTTCA 60.271 47.619 0.00 0.00 38.01 3.02
2393 4356 2.017049 GCGGGTAATCAGCAACTTCAT 58.983 47.619 0.00 0.00 0.00 2.57
2394 4357 2.423538 GCGGGTAATCAGCAACTTCATT 59.576 45.455 0.00 0.00 0.00 2.57
2395 4358 3.625764 GCGGGTAATCAGCAACTTCATTA 59.374 43.478 0.00 0.00 0.00 1.90
2396 4359 4.275936 GCGGGTAATCAGCAACTTCATTAT 59.724 41.667 0.00 0.00 0.00 1.28
2397 4360 5.221048 GCGGGTAATCAGCAACTTCATTATT 60.221 40.000 0.00 0.00 0.00 1.40
2446 4409 7.280876 GCTAAATATCCTGTCAGACACAATCAA 59.719 37.037 0.00 0.00 33.31 2.57
2553 4516 8.298854 CACAAACCAAAATCAGAGACATTATCA 58.701 33.333 0.00 0.00 0.00 2.15
2584 4547 4.914983 ACTCAATGATCACTGGTCACATT 58.085 39.130 4.03 0.00 0.00 2.71
2594 4557 8.420222 TGATCACTGGTCACATTGTTTTAAAAT 58.580 29.630 3.52 0.00 0.00 1.82
2663 4626 2.002899 TCACGCTTTGTGTGACACG 58.997 52.632 11.51 0.84 46.14 4.49
2664 4627 0.738063 TCACGCTTTGTGTGACACGT 60.738 50.000 11.51 1.53 46.14 4.49
2665 4628 0.924777 CACGCTTTGTGTGACACGTA 59.075 50.000 11.51 0.00 45.59 3.57
2667 4630 0.924777 CGCTTTGTGTGACACGTACA 59.075 50.000 11.51 0.00 37.14 2.90
2669 4632 1.004292 GCTTTGTGTGACACGTACACC 60.004 52.381 15.55 10.45 45.95 4.16
2670 4633 1.595794 CTTTGTGTGACACGTACACCC 59.404 52.381 15.55 8.60 45.95 4.61
2671 4634 0.825410 TTGTGTGACACGTACACCCT 59.175 50.000 15.55 0.00 45.95 4.34
2672 4635 0.103390 TGTGTGACACGTACACCCTG 59.897 55.000 15.55 0.00 45.95 4.45
2673 4636 0.103572 GTGTGACACGTACACCCTGT 59.896 55.000 17.98 0.00 41.90 4.00
2674 4637 1.337703 GTGTGACACGTACACCCTGTA 59.662 52.381 17.98 1.75 41.90 2.74
2675 4638 2.030371 TGTGACACGTACACCCTGTAA 58.970 47.619 17.98 1.18 34.21 2.41
2676 4639 2.429971 TGTGACACGTACACCCTGTAAA 59.570 45.455 17.98 0.61 34.21 2.01
2677 4640 2.796593 GTGACACGTACACCCTGTAAAC 59.203 50.000 12.18 0.00 34.21 2.01
2678 4641 2.694628 TGACACGTACACCCTGTAAACT 59.305 45.455 0.00 0.00 34.21 2.66
2679 4642 3.132646 TGACACGTACACCCTGTAAACTT 59.867 43.478 0.00 0.00 34.21 2.66
2680 4643 4.340666 TGACACGTACACCCTGTAAACTTA 59.659 41.667 0.00 0.00 34.21 2.24
2681 4644 5.163468 TGACACGTACACCCTGTAAACTTAA 60.163 40.000 0.00 0.00 34.21 1.85
2682 4645 5.049828 ACACGTACACCCTGTAAACTTAAC 58.950 41.667 0.00 0.00 34.21 2.01
2683 4646 5.049167 CACGTACACCCTGTAAACTTAACA 58.951 41.667 0.00 0.00 34.21 2.41
2684 4647 5.049828 ACGTACACCCTGTAAACTTAACAC 58.950 41.667 0.00 0.00 34.21 3.32
2685 4648 5.049167 CGTACACCCTGTAAACTTAACACA 58.951 41.667 0.00 0.00 34.21 3.72
2686 4649 5.176223 CGTACACCCTGTAAACTTAACACAG 59.824 44.000 0.00 0.00 39.50 3.66
2687 4650 5.106876 ACACCCTGTAAACTTAACACAGT 57.893 39.130 0.00 0.00 38.39 3.55
2688 4651 5.503002 ACACCCTGTAAACTTAACACAGTT 58.497 37.500 0.00 0.00 38.39 3.16
2689 4652 5.947566 ACACCCTGTAAACTTAACACAGTTT 59.052 36.000 4.37 4.37 46.54 2.66
2690 4653 6.127842 ACACCCTGTAAACTTAACACAGTTTG 60.128 38.462 8.72 0.00 44.92 2.93
2691 4654 6.094325 CACCCTGTAAACTTAACACAGTTTGA 59.906 38.462 8.72 0.00 44.92 2.69
2692 4655 6.660094 ACCCTGTAAACTTAACACAGTTTGAA 59.340 34.615 8.72 0.00 44.92 2.69
2693 4656 7.177041 ACCCTGTAAACTTAACACAGTTTGAAA 59.823 33.333 8.72 0.00 44.92 2.69
2694 4657 8.194769 CCCTGTAAACTTAACACAGTTTGAAAT 58.805 33.333 8.72 0.00 44.92 2.17
2699 4662 8.920509 AAACTTAACACAGTTTGAAATACACC 57.079 30.769 0.00 0.00 43.88 4.16
2700 4663 7.034685 ACTTAACACAGTTTGAAATACACCC 57.965 36.000 0.00 0.00 0.00 4.61
2701 4664 6.831868 ACTTAACACAGTTTGAAATACACCCT 59.168 34.615 0.00 0.00 0.00 4.34
2702 4665 5.767816 AACACAGTTTGAAATACACCCTC 57.232 39.130 0.00 0.00 0.00 4.30
2703 4666 4.142038 ACACAGTTTGAAATACACCCTCC 58.858 43.478 0.00 0.00 0.00 4.30
2704 4667 3.506067 CACAGTTTGAAATACACCCTCCC 59.494 47.826 0.00 0.00 0.00 4.30
2705 4668 3.089284 CAGTTTGAAATACACCCTCCCC 58.911 50.000 0.00 0.00 0.00 4.81
2706 4669 2.042569 AGTTTGAAATACACCCTCCCCC 59.957 50.000 0.00 0.00 0.00 5.40
2724 4687 1.615262 CCCTCCCCTGACCATTTCC 59.385 63.158 0.00 0.00 0.00 3.13
2728 4691 0.618458 TCCCCTGACCATTTCCGAAG 59.382 55.000 0.00 0.00 0.00 3.79
2759 4971 4.656112 ACCTACTCCCTCTGTTCCATAATG 59.344 45.833 0.00 0.00 0.00 1.90
2765 4977 6.127026 ACTCCCTCTGTTCCATAATGTAAGAC 60.127 42.308 0.00 0.00 0.00 3.01
2768 4980 5.749109 CCTCTGTTCCATAATGTAAGACGTC 59.251 44.000 7.70 7.70 0.00 4.34
2773 4986 7.802738 TGTTCCATAATGTAAGACGTCTTTTG 58.197 34.615 33.82 20.03 37.40 2.44
2793 5006 9.109393 TCTTTTGACATTAGTGCATTATAGGAC 57.891 33.333 0.00 0.00 0.00 3.85
2821 5034 6.665680 AGGGAGTATGTAGTATCATCATCACC 59.334 42.308 0.00 0.00 0.00 4.02
2822 5035 6.404844 GGGAGTATGTAGTATCATCATCACCG 60.405 46.154 0.00 0.00 0.00 4.94
2823 5036 6.151312 GGAGTATGTAGTATCATCATCACCGT 59.849 42.308 0.00 0.00 0.00 4.83
2839 5053 2.094752 CACCGTCAAATCCAATTCCCAC 60.095 50.000 0.00 0.00 0.00 4.61
2840 5054 2.166829 CCGTCAAATCCAATTCCCACA 58.833 47.619 0.00 0.00 0.00 4.17
2943 5157 2.266055 GGGTCAAGGCGGACTCAG 59.734 66.667 11.22 0.00 38.20 3.35
3020 5252 1.135939 CGTGCTCGTACATGGTCGA 59.864 57.895 12.42 12.42 34.88 4.20
3058 5290 3.723764 GCGGATGTGCATTTATACAAACG 59.276 43.478 0.00 0.00 34.96 3.60
3064 5296 6.986904 TGTGCATTTATACAAACGGTCATA 57.013 33.333 0.00 0.00 0.00 2.15
3065 5297 7.561021 TGTGCATTTATACAAACGGTCATAT 57.439 32.000 0.00 0.00 0.00 1.78
3066 5298 7.413644 TGTGCATTTATACAAACGGTCATATG 58.586 34.615 0.00 0.00 0.00 1.78
3113 5348 2.405618 TCCTGGAGGAGGATGGTATG 57.594 55.000 0.00 0.00 46.96 2.39
3171 5406 3.542676 ACGTGTTCCCGCCACAGA 61.543 61.111 0.00 0.00 33.00 3.41
3240 5475 3.561725 GCCGATCAGTAGCTTAATTTGCT 59.438 43.478 9.92 9.92 43.79 3.91
3251 5486 9.853177 AGTAGCTTAATTTGCTTACTATTGGAT 57.147 29.630 10.23 0.00 41.46 3.41
3298 5533 2.299993 TGCGGATCTCAATGTGTCTC 57.700 50.000 0.00 0.00 0.00 3.36
3498 5733 0.388649 GGACGGTCAGTGCAGTGTAG 60.389 60.000 20.73 14.82 41.21 2.74
3499 5734 0.388649 GACGGTCAGTGCAGTGTAGG 60.389 60.000 20.73 12.85 0.00 3.18
3500 5735 0.826256 ACGGTCAGTGCAGTGTAGGA 60.826 55.000 20.73 0.00 0.00 2.94
3501 5736 0.109086 CGGTCAGTGCAGTGTAGGAG 60.109 60.000 20.73 6.21 0.00 3.69
3502 5737 0.969894 GGTCAGTGCAGTGTAGGAGT 59.030 55.000 20.73 0.00 0.00 3.85
3503 5738 2.168496 GGTCAGTGCAGTGTAGGAGTA 58.832 52.381 20.73 0.00 0.00 2.59
3708 5943 1.226030 GGGTGATATACGTTGCGGCC 61.226 60.000 0.00 0.00 0.00 6.13
3785 6020 3.225798 GCTGGCCCAAGCACACAA 61.226 61.111 10.13 0.00 43.01 3.33
3786 6021 2.730094 CTGGCCCAAGCACACAAC 59.270 61.111 0.00 0.00 42.56 3.32
3812 6049 9.484326 CGATTTATCTAAGTATCTCTGATGTCG 57.516 37.037 0.00 0.00 0.00 4.35
3843 6084 2.334838 CGCTACGGTTTAGCTTCTGTT 58.665 47.619 0.00 0.00 38.35 3.16
3892 6134 8.948631 TGCGATAAAAGAGATTAGATGAACTT 57.051 30.769 0.00 0.00 0.00 2.66
3893 6135 8.820933 TGCGATAAAAGAGATTAGATGAACTTG 58.179 33.333 0.00 0.00 0.00 3.16
3895 6137 8.000991 CGATAAAAGAGATTAGATGAACTTGCG 58.999 37.037 0.00 0.00 0.00 4.85
3946 6188 5.240844 GGCTTTAAAAAGAGTGAACTAGCCA 59.759 40.000 6.64 0.00 42.95 4.75
3947 6189 6.143496 GCTTTAAAAAGAGTGAACTAGCCAC 58.857 40.000 6.64 7.56 38.28 5.01
3949 6191 3.746045 AAAAGAGTGAACTAGCCACGA 57.254 42.857 9.39 0.00 39.38 4.35
4134 6378 5.046663 ACAAATTGTGTTTGGTTTGAGTCCT 60.047 36.000 0.00 0.00 37.01 3.85
4237 6481 9.413048 GTCATTGTTAGTAGGATTACAGCTATC 57.587 37.037 0.00 0.00 31.96 2.08
4340 6591 1.891919 GAGCCAACAGCCAACACGA 60.892 57.895 0.00 0.00 45.47 4.35
4355 6606 9.061610 CAGCCAACACGATTTAAAAATACTTAG 57.938 33.333 0.00 0.00 0.00 2.18
4438 6689 8.556213 AGCAAATATAAGACGTTTTAGGTCAA 57.444 30.769 4.75 0.00 35.60 3.18
4551 6809 4.057432 TGTACTAACCGCTTTACAACACC 58.943 43.478 0.00 0.00 0.00 4.16
4557 6815 1.331138 CCGCTTTACAACACCGAACAA 59.669 47.619 0.00 0.00 0.00 2.83
4562 6820 6.402334 CCGCTTTACAACACCGAACAATATTA 60.402 38.462 0.00 0.00 0.00 0.98
4563 6821 7.016466 CGCTTTACAACACCGAACAATATTAA 58.984 34.615 0.00 0.00 0.00 1.40
4564 6822 7.215568 CGCTTTACAACACCGAACAATATTAAG 59.784 37.037 0.00 0.00 0.00 1.85
4565 6823 8.019094 GCTTTACAACACCGAACAATATTAAGT 58.981 33.333 0.00 0.00 0.00 2.24
4594 6852 6.817765 ACACTTACCAATATCACAAGTTGG 57.182 37.500 7.96 2.05 46.08 3.77
4595 6853 5.710099 ACACTTACCAATATCACAAGTTGGG 59.290 40.000 7.96 2.56 45.17 4.12
4596 6854 4.705023 ACTTACCAATATCACAAGTTGGGC 59.295 41.667 7.96 0.00 45.17 5.36
4597 6855 3.456380 ACCAATATCACAAGTTGGGCT 57.544 42.857 7.96 0.00 45.17 5.19
4598 6856 3.091545 ACCAATATCACAAGTTGGGCTG 58.908 45.455 7.96 0.00 45.17 4.85
4599 6857 2.159198 CCAATATCACAAGTTGGGCTGC 60.159 50.000 7.96 0.00 38.93 5.25
4600 6858 2.492881 CAATATCACAAGTTGGGCTGCA 59.507 45.455 7.96 0.00 0.00 4.41
4601 6859 2.284754 TATCACAAGTTGGGCTGCAA 57.715 45.000 7.96 0.00 0.00 4.08
4602 6860 0.675633 ATCACAAGTTGGGCTGCAAC 59.324 50.000 7.96 0.00 0.00 4.17
4603 6861 0.682532 TCACAAGTTGGGCTGCAACA 60.683 50.000 7.96 0.00 35.18 3.33
4604 6862 0.390124 CACAAGTTGGGCTGCAACAT 59.610 50.000 7.96 0.00 35.18 2.71
4605 6863 0.675633 ACAAGTTGGGCTGCAACATC 59.324 50.000 7.96 0.00 35.18 3.06
4606 6864 0.675083 CAAGTTGGGCTGCAACATCA 59.325 50.000 0.50 0.00 35.18 3.07
4607 6865 1.274167 CAAGTTGGGCTGCAACATCAT 59.726 47.619 0.50 0.00 35.18 2.45
4608 6866 0.892755 AGTTGGGCTGCAACATCATG 59.107 50.000 0.50 0.00 35.18 3.07
4609 6867 0.108520 GTTGGGCTGCAACATCATGG 60.109 55.000 0.50 0.00 33.13 3.66
4610 6868 1.259142 TTGGGCTGCAACATCATGGG 61.259 55.000 0.50 0.00 0.00 4.00
4611 6869 2.497770 GGCTGCAACATCATGGGC 59.502 61.111 0.50 0.00 0.00 5.36
4612 6870 2.103538 GCTGCAACATCATGGGCG 59.896 61.111 0.00 0.00 0.00 6.13
4613 6871 2.409055 GCTGCAACATCATGGGCGA 61.409 57.895 0.00 0.00 0.00 5.54
4614 6872 1.725665 CTGCAACATCATGGGCGAG 59.274 57.895 0.00 0.00 0.00 5.03
4615 6873 2.332362 CTGCAACATCATGGGCGAGC 62.332 60.000 0.00 0.00 0.00 5.03
4616 6874 3.113745 CAACATCATGGGCGAGCC 58.886 61.111 5.37 5.37 0.00 4.70
4617 6875 1.750018 CAACATCATGGGCGAGCCA 60.750 57.895 16.65 2.66 37.98 4.75
4618 6876 1.452651 AACATCATGGGCGAGCCAG 60.453 57.895 16.65 5.35 37.98 4.85
4619 6877 1.913951 AACATCATGGGCGAGCCAGA 61.914 55.000 16.65 10.59 37.98 3.86
4620 6878 1.153107 CATCATGGGCGAGCCAGAA 60.153 57.895 16.65 1.10 37.98 3.02
4621 6879 1.147824 ATCATGGGCGAGCCAGAAG 59.852 57.895 16.65 2.85 37.98 2.85
4622 6880 2.955022 ATCATGGGCGAGCCAGAAGC 62.955 60.000 16.65 0.00 44.25 3.86
4646 6904 4.832590 CAAAATTTGGGCATTGAAGCAA 57.167 36.364 0.00 0.00 35.83 3.91
4647 6905 5.184340 CAAAATTTGGGCATTGAAGCAAA 57.816 34.783 0.00 0.00 35.83 3.68
4648 6906 4.834357 AAATTTGGGCATTGAAGCAAAC 57.166 36.364 0.00 0.00 35.83 2.93
4649 6907 2.996249 TTTGGGCATTGAAGCAAACA 57.004 40.000 0.00 0.00 35.83 2.83
4650 6908 2.996249 TTGGGCATTGAAGCAAACAA 57.004 40.000 0.00 0.00 35.83 2.83
4651 6909 3.488778 TTGGGCATTGAAGCAAACAAT 57.511 38.095 0.00 0.00 38.30 2.71
4652 6910 3.488778 TGGGCATTGAAGCAAACAATT 57.511 38.095 0.00 0.00 36.07 2.32
4653 6911 3.139850 TGGGCATTGAAGCAAACAATTG 58.860 40.909 3.24 3.24 36.07 2.32
4666 6924 5.514059 CAAACAATTGCCAAATCTTACGG 57.486 39.130 5.05 0.00 0.00 4.02
4667 6925 4.864704 AACAATTGCCAAATCTTACGGT 57.135 36.364 5.05 0.00 0.00 4.83
4668 6926 4.434713 ACAATTGCCAAATCTTACGGTC 57.565 40.909 5.05 0.00 0.00 4.79
4669 6927 3.192633 ACAATTGCCAAATCTTACGGTCC 59.807 43.478 5.05 0.00 0.00 4.46
4670 6928 2.570415 TTGCCAAATCTTACGGTCCA 57.430 45.000 0.00 0.00 0.00 4.02
4671 6929 2.107950 TGCCAAATCTTACGGTCCAG 57.892 50.000 0.00 0.00 0.00 3.86
4672 6930 0.733150 GCCAAATCTTACGGTCCAGC 59.267 55.000 0.00 0.00 0.00 4.85
4673 6931 1.679032 GCCAAATCTTACGGTCCAGCT 60.679 52.381 0.00 0.00 0.00 4.24
4674 6932 2.419574 GCCAAATCTTACGGTCCAGCTA 60.420 50.000 0.00 0.00 0.00 3.32
4675 6933 3.869065 CCAAATCTTACGGTCCAGCTAA 58.131 45.455 0.00 0.00 0.00 3.09
4676 6934 4.258543 CCAAATCTTACGGTCCAGCTAAA 58.741 43.478 0.00 0.00 0.00 1.85
4677 6935 4.698304 CCAAATCTTACGGTCCAGCTAAAA 59.302 41.667 0.00 0.00 0.00 1.52
4678 6936 5.182380 CCAAATCTTACGGTCCAGCTAAAAA 59.818 40.000 0.00 0.00 0.00 1.94
4721 6979 2.396590 AAAATAGGCATGGTCGACGT 57.603 45.000 9.92 0.00 0.00 4.34
4722 6980 2.396590 AAATAGGCATGGTCGACGTT 57.603 45.000 9.92 0.00 0.00 3.99
4723 6981 1.651987 AATAGGCATGGTCGACGTTG 58.348 50.000 9.92 10.53 0.00 4.10
4724 6982 0.179084 ATAGGCATGGTCGACGTTGG 60.179 55.000 9.92 0.02 0.00 3.77
4725 6983 1.537814 TAGGCATGGTCGACGTTGGT 61.538 55.000 9.92 0.00 0.00 3.67
4726 6984 1.964373 GGCATGGTCGACGTTGGTT 60.964 57.895 9.92 0.00 0.00 3.67
4727 6985 1.206578 GCATGGTCGACGTTGGTTG 59.793 57.895 9.92 1.96 0.00 3.77
4728 6986 1.503818 GCATGGTCGACGTTGGTTGT 61.504 55.000 9.92 0.00 0.00 3.32
4729 6987 1.785768 CATGGTCGACGTTGGTTGTA 58.214 50.000 9.92 0.00 0.00 2.41
4730 6988 2.136728 CATGGTCGACGTTGGTTGTAA 58.863 47.619 9.92 0.00 0.00 2.41
4731 6989 2.306341 TGGTCGACGTTGGTTGTAAA 57.694 45.000 9.92 0.00 0.00 2.01
4766 7024 9.804758 ACTTAAAATTAACACATCGGTTTCAAA 57.195 25.926 0.00 0.00 32.29 2.69
4795 7053 7.896383 AATTTTAGAACCATATAGGCAAGCA 57.104 32.000 0.00 0.00 43.14 3.91
4796 7054 8.482852 AATTTTAGAACCATATAGGCAAGCAT 57.517 30.769 0.00 0.00 43.14 3.79
4797 7055 9.586732 AATTTTAGAACCATATAGGCAAGCATA 57.413 29.630 0.00 0.00 43.14 3.14
4798 7056 9.759473 ATTTTAGAACCATATAGGCAAGCATAT 57.241 29.630 4.57 4.57 43.14 1.78
4799 7057 9.586732 TTTTAGAACCATATAGGCAAGCATATT 57.413 29.630 4.47 0.00 43.14 1.28
4800 7058 8.792830 TTAGAACCATATAGGCAAGCATATTC 57.207 34.615 4.47 0.00 43.14 1.75
4801 7059 7.025520 AGAACCATATAGGCAAGCATATTCT 57.974 36.000 4.47 0.00 43.14 2.40
4802 7060 7.465116 AGAACCATATAGGCAAGCATATTCTT 58.535 34.615 4.47 0.00 43.14 2.52
4803 7061 8.605947 AGAACCATATAGGCAAGCATATTCTTA 58.394 33.333 4.47 0.00 43.14 2.10
4804 7062 8.798859 AACCATATAGGCAAGCATATTCTTAG 57.201 34.615 4.47 0.00 43.14 2.18
4805 7063 7.341805 ACCATATAGGCAAGCATATTCTTAGG 58.658 38.462 4.47 3.61 43.14 2.69
4806 7064 7.182749 ACCATATAGGCAAGCATATTCTTAGGA 59.817 37.037 4.47 0.00 43.14 2.94
4807 7065 7.714377 CCATATAGGCAAGCATATTCTTAGGAG 59.286 40.741 4.47 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.829725 ACATTGTATGCATGTGTGATTAGTTT 58.170 30.769 10.16 0.00 0.00 2.66
38 39 7.395190 AACATTGTATGCATGTGTGATTAGT 57.605 32.000 10.16 0.00 0.00 2.24
41 42 7.966246 AAAAACATTGTATGCATGTGTGATT 57.034 28.000 10.16 5.84 0.00 2.57
63 64 8.005192 TGTATGCATATATTCAGCCACAAAAA 57.995 30.769 10.16 0.00 0.00 1.94
67 68 6.716173 ACATTGTATGCATATATTCAGCCACA 59.284 34.615 10.16 0.00 0.00 4.17
69 70 7.764141 AACATTGTATGCATATATTCAGCCA 57.236 32.000 10.16 0.00 0.00 4.75
70 71 8.729756 TGTAACATTGTATGCATATATTCAGCC 58.270 33.333 10.16 0.00 0.00 4.85
81 82 8.087136 ACATTCAACATTGTAACATTGTATGCA 58.913 29.630 0.00 0.00 34.83 3.96
82 83 8.374728 CACATTCAACATTGTAACATTGTATGC 58.625 33.333 0.00 0.00 34.83 3.14
83 84 8.374728 GCACATTCAACATTGTAACATTGTATG 58.625 33.333 0.00 0.00 36.48 2.39
86 87 6.279123 TGCACATTCAACATTGTAACATTGT 58.721 32.000 0.00 0.00 30.67 2.71
87 88 6.766452 TGCACATTCAACATTGTAACATTG 57.234 33.333 0.00 0.00 0.00 2.82
88 89 7.783090 TTTGCACATTCAACATTGTAACATT 57.217 28.000 0.00 0.00 0.00 2.71
89 90 7.254727 GGTTTTGCACATTCAACATTGTAACAT 60.255 33.333 0.00 0.00 0.00 2.71
90 91 6.036517 GGTTTTGCACATTCAACATTGTAACA 59.963 34.615 0.00 0.00 0.00 2.41
94 95 3.555139 CGGTTTTGCACATTCAACATTGT 59.445 39.130 0.00 0.00 0.00 2.71
95 96 3.555139 ACGGTTTTGCACATTCAACATTG 59.445 39.130 0.00 0.00 0.00 2.82
114 115 2.159379 GCCCATTCTTCAAAGCTTACGG 60.159 50.000 0.00 0.00 0.00 4.02
145 146 9.294030 CAACTCTATTGCAACCTAAATGAATTC 57.706 33.333 0.00 0.00 0.00 2.17
203 204 3.274586 CCACCCTGCATCATCGCG 61.275 66.667 0.00 0.00 33.35 5.87
205 206 0.107268 TGATCCACCCTGCATCATCG 59.893 55.000 0.00 0.00 0.00 3.84
213 214 4.702131 CCTTCTAAAAAGTGATCCACCCTG 59.298 45.833 0.00 0.00 34.49 4.45
243 244 0.532573 GGACTCCTCGATGTTGAGCA 59.467 55.000 0.00 0.00 34.56 4.26
247 248 1.363744 GCTTGGACTCCTCGATGTTG 58.636 55.000 0.00 0.00 0.00 3.33
253 254 4.821589 GGGCGCTTGGACTCCTCG 62.822 72.222 7.64 0.00 0.00 4.63
283 284 2.643232 GGCTGCTTTTGCCCAGGAG 61.643 63.158 0.00 0.00 46.87 3.69
332 334 5.462240 AGAGATGATCCCAACTAGATGTCA 58.538 41.667 0.00 0.00 0.00 3.58
333 335 6.418057 AAGAGATGATCCCAACTAGATGTC 57.582 41.667 0.00 0.00 0.00 3.06
346 348 2.819608 CGAGGAGGAGGAAGAGATGATC 59.180 54.545 0.00 0.00 0.00 2.92
355 357 2.510382 ACTATCAGACGAGGAGGAGGAA 59.490 50.000 0.00 0.00 0.00 3.36
366 368 1.217585 CGGCATGCCACTATCAGACG 61.218 60.000 34.93 13.93 35.37 4.18
372 374 0.390860 GTCTCTCGGCATGCCACTAT 59.609 55.000 34.93 0.00 35.37 2.12
391 393 0.179134 GAGGGGAGTCATTGTCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
430 432 2.386661 AGTACCGATTGTGCTCCTTG 57.613 50.000 0.00 0.00 34.48 3.61
442 444 1.304713 GGGGTCACTGGAGTACCGA 60.305 63.158 0.00 0.00 39.42 4.69
446 448 1.552486 CCTCTTGGGGTCACTGGAGTA 60.552 57.143 0.00 0.00 0.00 2.59
465 467 1.064825 TTTCCTCACAGGTCCCTTCC 58.935 55.000 0.00 0.00 36.53 3.46
502 504 1.969208 CCTAGATAAACGGAGGGGGAC 59.031 57.143 0.00 0.00 0.00 4.46
547 562 2.438868 AAAGTTTTGCAATCGAGCCC 57.561 45.000 0.00 0.00 0.00 5.19
548 563 4.105486 GGATAAAGTTTTGCAATCGAGCC 58.895 43.478 0.00 0.00 0.00 4.70
550 565 7.539712 TCTAGGATAAAGTTTTGCAATCGAG 57.460 36.000 0.00 0.00 0.00 4.04
568 583 9.533831 TCATAACAACATAGCATAGATCTAGGA 57.466 33.333 18.28 0.00 0.00 2.94
594 609 7.982252 ACCCATCTACATAGATCACATTTGAT 58.018 34.615 0.00 0.00 45.78 2.57
597 612 7.577303 ACAACCCATCTACATAGATCACATTT 58.423 34.615 0.00 0.00 40.91 2.32
612 627 3.531397 TCCCAAATCCATACAACCCATCT 59.469 43.478 0.00 0.00 0.00 2.90
613 628 3.891366 CTCCCAAATCCATACAACCCATC 59.109 47.826 0.00 0.00 0.00 3.51
623 650 1.444933 TATCCGCCTCCCAAATCCAT 58.555 50.000 0.00 0.00 0.00 3.41
637 664 1.754745 CCACCCCCTCACATATCCG 59.245 63.158 0.00 0.00 0.00 4.18
640 667 1.999634 GCAGCCACCCCCTCACATAT 62.000 60.000 0.00 0.00 0.00 1.78
641 668 2.679342 GCAGCCACCCCCTCACATA 61.679 63.158 0.00 0.00 0.00 2.29
642 669 4.052518 GCAGCCACCCCCTCACAT 62.053 66.667 0.00 0.00 0.00 3.21
646 673 3.798511 GTAGGCAGCCACCCCCTC 61.799 72.222 15.80 0.00 0.00 4.30
695 722 4.772886 ATTTGGCTCCTTATAGTCCGTT 57.227 40.909 0.00 0.00 0.00 4.44
706 733 4.226846 TCATGAGAGAGAAATTTGGCTCCT 59.773 41.667 0.00 0.00 0.00 3.69
803 830 1.589993 ATTGAGATCCGAGCGCGTG 60.590 57.895 8.43 0.00 35.23 5.34
811 838 4.793216 CCGTTTTTAAAGCATTGAGATCCG 59.207 41.667 0.00 0.00 0.00 4.18
846 873 4.695217 TGACTGACCACAAACTTGTTTC 57.305 40.909 0.00 0.00 39.91 2.78
872 899 5.126384 AGTCGACTCAAAACAAAATTTGGGA 59.874 36.000 13.58 1.80 42.23 4.37
891 918 1.298993 ACCGCTAGAGGTCAGTCGA 59.701 57.895 13.04 0.00 41.46 4.20
927 954 1.268352 CACAGCCGCCTCTCTCTATAC 59.732 57.143 0.00 0.00 0.00 1.47
928 955 1.143073 TCACAGCCGCCTCTCTCTATA 59.857 52.381 0.00 0.00 0.00 1.31
929 956 0.106469 TCACAGCCGCCTCTCTCTAT 60.106 55.000 0.00 0.00 0.00 1.98
932 959 0.320771 TTTTCACAGCCGCCTCTCTC 60.321 55.000 0.00 0.00 0.00 3.20
933 960 0.326264 ATTTTCACAGCCGCCTCTCT 59.674 50.000 0.00 0.00 0.00 3.10
934 961 1.936547 CTATTTTCACAGCCGCCTCTC 59.063 52.381 0.00 0.00 0.00 3.20
935 962 1.407437 CCTATTTTCACAGCCGCCTCT 60.407 52.381 0.00 0.00 0.00 3.69
937 964 0.618458 TCCTATTTTCACAGCCGCCT 59.382 50.000 0.00 0.00 0.00 5.52
938 965 1.017387 CTCCTATTTTCACAGCCGCC 58.983 55.000 0.00 0.00 0.00 6.13
939 966 2.024176 TCTCCTATTTTCACAGCCGC 57.976 50.000 0.00 0.00 0.00 6.53
940 967 2.352960 GCTTCTCCTATTTTCACAGCCG 59.647 50.000 0.00 0.00 0.00 5.52
941 968 3.347216 TGCTTCTCCTATTTTCACAGCC 58.653 45.455 0.00 0.00 0.00 4.85
943 970 5.106396 CCAGTTGCTTCTCCTATTTTCACAG 60.106 44.000 0.00 0.00 0.00 3.66
944 971 4.761739 CCAGTTGCTTCTCCTATTTTCACA 59.238 41.667 0.00 0.00 0.00 3.58
945 972 4.379918 GCCAGTTGCTTCTCCTATTTTCAC 60.380 45.833 0.00 0.00 36.87 3.18
947 974 3.758554 TGCCAGTTGCTTCTCCTATTTTC 59.241 43.478 0.00 0.00 42.00 2.29
948 975 3.760684 CTGCCAGTTGCTTCTCCTATTTT 59.239 43.478 0.00 0.00 42.00 1.82
950 977 2.307098 ACTGCCAGTTGCTTCTCCTATT 59.693 45.455 0.00 0.00 42.00 1.73
951 978 1.912043 ACTGCCAGTTGCTTCTCCTAT 59.088 47.619 0.00 0.00 42.00 2.57
972 999 6.575942 GCGCGTCAATCTTTAGTTTCTTTAAA 59.424 34.615 8.43 0.00 0.00 1.52
1071 1993 2.922503 TCCAAGTCTCGGCTGGCA 60.923 61.111 1.08 0.00 0.00 4.92
1284 2241 1.525535 GAGGGACGCGTAGAGGCTA 60.526 63.158 13.97 0.00 33.93 3.93
1407 2370 2.674380 AACGCCTCGAGGTACCGT 60.674 61.111 31.43 27.52 37.57 4.83
1467 2852 3.680786 CGGACGCTGACCACCTCA 61.681 66.667 0.00 0.00 0.00 3.86
1665 3336 0.885879 CCACTGAGCAGTACCACGTA 59.114 55.000 2.36 0.00 40.20 3.57
1996 3852 7.678947 AGTCAATCTTTGTCCAACTTCATAG 57.321 36.000 0.00 0.00 0.00 2.23
2015 3872 4.456662 TTTGCCTTAACCCCTAAGTCAA 57.543 40.909 0.00 0.00 34.49 3.18
2100 3984 2.589014 CTGCCGCTCAGTCAAAAATTC 58.411 47.619 0.00 0.00 38.02 2.17
2161 4045 2.022195 CCACTACGACCTAAGCTAGCA 58.978 52.381 18.83 0.00 0.00 3.49
2231 4115 1.070786 GTGGACCTCTTTGGCGACA 59.929 57.895 0.00 0.00 40.22 4.35
2252 4136 4.357947 GGCGCCGATCGGATAGCA 62.358 66.667 37.64 0.00 38.94 3.49
2255 4139 3.680786 CAGGGCGCCGATCGGATA 61.681 66.667 37.64 0.00 38.94 2.59
2270 4154 2.005451 GTAGTGCTCTGCATTCCACAG 58.995 52.381 11.67 0.00 41.91 3.66
2271 4155 1.625315 AGTAGTGCTCTGCATTCCACA 59.375 47.619 6.64 0.00 41.91 4.17
2272 4156 2.005451 CAGTAGTGCTCTGCATTCCAC 58.995 52.381 6.64 0.00 41.91 4.02
2303 4187 0.839277 CCATGGGATGTAGCCACAGA 59.161 55.000 2.85 0.00 38.30 3.41
2340 4224 6.654582 TGAAGTTGCTGATGCTAAATTGTAGA 59.345 34.615 0.00 0.00 40.48 2.59
2368 4331 2.625790 AGTTGCTGATTACCCGCAAAAA 59.374 40.909 0.00 0.00 44.22 1.94
2369 4332 2.235016 AGTTGCTGATTACCCGCAAAA 58.765 42.857 0.00 0.00 44.22 2.44
2370 4333 1.904287 AGTTGCTGATTACCCGCAAA 58.096 45.000 0.00 0.00 44.22 3.68
2371 4334 1.810151 GAAGTTGCTGATTACCCGCAA 59.190 47.619 0.00 0.00 40.93 4.85
2372 4335 1.271108 TGAAGTTGCTGATTACCCGCA 60.271 47.619 0.00 0.00 0.00 5.69
2373 4336 1.448985 TGAAGTTGCTGATTACCCGC 58.551 50.000 0.00 0.00 0.00 6.13
2374 4337 6.260936 AGAATAATGAAGTTGCTGATTACCCG 59.739 38.462 0.00 0.00 0.00 5.28
2375 4338 7.573968 AGAATAATGAAGTTGCTGATTACCC 57.426 36.000 0.00 0.00 0.00 3.69
2376 4339 8.677300 TGAAGAATAATGAAGTTGCTGATTACC 58.323 33.333 0.00 0.00 0.00 2.85
2395 4358 7.594015 GCATCGCAATTGAGAATAATGAAGAAT 59.406 33.333 16.03 0.00 0.00 2.40
2396 4359 6.914215 GCATCGCAATTGAGAATAATGAAGAA 59.086 34.615 16.03 0.00 0.00 2.52
2397 4360 6.261603 AGCATCGCAATTGAGAATAATGAAGA 59.738 34.615 16.03 0.00 0.00 2.87
2446 4409 8.850156 ACATAGTAAGAAGCAAAATGAAGTTGT 58.150 29.630 0.00 0.00 0.00 3.32
2553 4516 7.628234 ACCAGTGATCATTGAGTAAGATCTTT 58.372 34.615 18.99 0.00 39.07 2.52
2570 4533 9.044150 CAATTTTAAAACAATGTGACCAGTGAT 57.956 29.630 1.97 0.00 38.95 3.06
2584 4547 8.830201 AGCACAAGCATATCAATTTTAAAACA 57.170 26.923 1.97 0.00 45.49 2.83
2594 4557 4.535781 ACCCATAAGCACAAGCATATCAA 58.464 39.130 0.00 0.00 45.49 2.57
2661 4624 5.049828 GTGTTAAGTTTACAGGGTGTACGT 58.950 41.667 0.00 0.00 31.69 3.57
2662 4625 5.049167 TGTGTTAAGTTTACAGGGTGTACG 58.951 41.667 0.00 0.00 31.69 3.67
2663 4626 6.051074 ACTGTGTTAAGTTTACAGGGTGTAC 58.949 40.000 14.93 0.00 44.56 2.90
2664 4627 6.237887 ACTGTGTTAAGTTTACAGGGTGTA 57.762 37.500 14.93 0.00 44.56 2.90
2665 4628 5.106876 ACTGTGTTAAGTTTACAGGGTGT 57.893 39.130 14.93 3.01 44.56 4.16
2667 4630 6.181908 TCAAACTGTGTTAAGTTTACAGGGT 58.818 36.000 14.93 6.72 46.19 4.34
2675 4638 7.340999 AGGGTGTATTTCAAACTGTGTTAAGTT 59.659 33.333 0.00 0.00 42.21 2.66
2676 4639 6.831868 AGGGTGTATTTCAAACTGTGTTAAGT 59.168 34.615 0.00 0.00 0.00 2.24
2677 4640 7.272037 AGGGTGTATTTCAAACTGTGTTAAG 57.728 36.000 0.00 0.00 0.00 1.85
2678 4641 6.263617 GGAGGGTGTATTTCAAACTGTGTTAA 59.736 38.462 0.00 0.00 0.00 2.01
2679 4642 5.766174 GGAGGGTGTATTTCAAACTGTGTTA 59.234 40.000 0.00 0.00 0.00 2.41
2680 4643 4.583073 GGAGGGTGTATTTCAAACTGTGTT 59.417 41.667 0.00 0.00 0.00 3.32
2681 4644 4.142038 GGAGGGTGTATTTCAAACTGTGT 58.858 43.478 0.00 0.00 0.00 3.72
2682 4645 3.506067 GGGAGGGTGTATTTCAAACTGTG 59.494 47.826 0.00 0.00 0.00 3.66
2683 4646 3.499745 GGGGAGGGTGTATTTCAAACTGT 60.500 47.826 0.00 0.00 0.00 3.55
2684 4647 3.089284 GGGGAGGGTGTATTTCAAACTG 58.911 50.000 0.00 0.00 0.00 3.16
2685 4648 2.042569 GGGGGAGGGTGTATTTCAAACT 59.957 50.000 0.00 0.00 0.00 2.66
2686 4649 2.453521 GGGGGAGGGTGTATTTCAAAC 58.546 52.381 0.00 0.00 0.00 2.93
2687 4650 2.911552 GGGGGAGGGTGTATTTCAAA 57.088 50.000 0.00 0.00 0.00 2.69
2704 4667 1.935931 AAATGGTCAGGGGAGGGGG 60.936 63.158 0.00 0.00 0.00 5.40
2705 4668 1.615262 GAAATGGTCAGGGGAGGGG 59.385 63.158 0.00 0.00 0.00 4.79
2706 4669 1.615262 GGAAATGGTCAGGGGAGGG 59.385 63.158 0.00 0.00 0.00 4.30
2707 4670 1.224592 CGGAAATGGTCAGGGGAGG 59.775 63.158 0.00 0.00 0.00 4.30
2708 4671 0.618458 TTCGGAAATGGTCAGGGGAG 59.382 55.000 0.00 0.00 0.00 4.30
2709 4672 0.618458 CTTCGGAAATGGTCAGGGGA 59.382 55.000 0.00 0.00 0.00 4.81
2710 4673 0.618458 TCTTCGGAAATGGTCAGGGG 59.382 55.000 0.00 0.00 0.00 4.79
2711 4674 2.489938 TTCTTCGGAAATGGTCAGGG 57.510 50.000 0.00 0.00 0.00 4.45
2712 4675 4.846779 TTTTTCTTCGGAAATGGTCAGG 57.153 40.909 0.00 0.00 42.61 3.86
2735 4947 2.715763 TGGAACAGAGGGAGTAGGTT 57.284 50.000 0.00 0.00 0.00 3.50
2744 4956 7.844993 AAGACGTCTTACATTATGGAACAGAGG 60.845 40.741 28.80 0.00 36.47 3.69
2752 4964 7.359262 TGTCAAAAGACGTCTTACATTATGG 57.641 36.000 29.91 11.93 34.61 2.74
2759 4971 6.073980 TGCACTAATGTCAAAAGACGTCTTAC 60.074 38.462 29.91 23.56 34.61 2.34
2765 4977 8.064222 CCTATAATGCACTAATGTCAAAAGACG 58.936 37.037 0.00 0.00 0.00 4.18
2768 4980 8.064222 CGTCCTATAATGCACTAATGTCAAAAG 58.936 37.037 0.00 0.00 0.00 2.27
2773 4986 5.779922 TCCGTCCTATAATGCACTAATGTC 58.220 41.667 0.00 0.00 0.00 3.06
2777 4990 3.576982 CCCTCCGTCCTATAATGCACTAA 59.423 47.826 0.00 0.00 0.00 2.24
2793 5006 5.254115 TGATGATACTACATACTCCCTCCG 58.746 45.833 0.00 0.00 0.00 4.63
2821 5034 2.556189 TGTGTGGGAATTGGATTTGACG 59.444 45.455 0.00 0.00 0.00 4.35
2822 5035 4.220382 TGATGTGTGGGAATTGGATTTGAC 59.780 41.667 0.00 0.00 0.00 3.18
2823 5036 4.220382 GTGATGTGTGGGAATTGGATTTGA 59.780 41.667 0.00 0.00 0.00 2.69
2839 5053 4.141981 ACATCTCTAGCTTGAGGTGATGTG 60.142 45.833 35.15 20.30 45.36 3.21
2840 5054 4.029520 ACATCTCTAGCTTGAGGTGATGT 58.970 43.478 35.15 26.50 45.36 3.06
3020 5252 5.181811 CACATCCGCCAACATATGTAATCAT 59.818 40.000 9.21 0.00 38.00 2.45
3064 5296 9.086758 GGAACCTGTACTTGTACCTATATACAT 57.913 37.037 8.25 0.00 35.04 2.29
3065 5297 8.469309 GGAACCTGTACTTGTACCTATATACA 57.531 38.462 8.25 0.00 33.18 2.29
3113 5348 2.028484 TTGTCGTCCACGCTCACC 59.972 61.111 0.00 0.00 39.60 4.02
3134 5369 2.159181 CTTGTAAAGCGGACCCACG 58.841 57.895 0.00 0.00 36.98 4.94
3171 5406 0.625683 AAGGAGATGTGAGGGGCCAT 60.626 55.000 4.39 0.00 0.00 4.40
3298 5533 5.105752 CACTGGAAAAAGGATCGACTAGAG 58.894 45.833 0.00 0.00 0.00 2.43
3498 5733 7.099764 TGTATATGTAGCGTAGGTAGTACTCC 58.900 42.308 0.00 0.48 42.96 3.85
3499 5734 8.602328 CATGTATATGTAGCGTAGGTAGTACTC 58.398 40.741 0.00 0.00 42.96 2.59
3500 5735 8.099537 ACATGTATATGTAGCGTAGGTAGTACT 58.900 37.037 2.87 0.00 45.45 2.73
3501 5736 8.261492 ACATGTATATGTAGCGTAGGTAGTAC 57.739 38.462 2.87 0.00 45.45 2.73
3669 5904 2.170187 CCTCCTCCACTCTTCCATCTTG 59.830 54.545 0.00 0.00 0.00 3.02
3708 5943 3.343788 GACCGACACCCTCGCTCTG 62.344 68.421 0.00 0.00 41.46 3.35
3731 5966 3.506096 CGTCGCGGTAGCTCTCCA 61.506 66.667 6.13 0.00 42.32 3.86
3786 6021 9.484326 CGACATCAGAGATACTTAGATAAATCG 57.516 37.037 0.00 0.00 0.00 3.34
3812 6049 2.353607 CGTAGCGGTCGATGAGGC 60.354 66.667 0.00 0.00 0.00 4.70
3823 6060 1.992170 ACAGAAGCTAAACCGTAGCG 58.008 50.000 0.00 0.00 44.73 4.26
3843 6084 2.970639 CGAAGGGACGAGAAGCCA 59.029 61.111 0.00 0.00 35.09 4.75
3892 6134 9.661563 TCTTTAGATTTTAGTTATTTCTCCGCA 57.338 29.630 0.00 0.00 0.00 5.69
3946 6188 9.999660 TCTAGTGATAGAATATTACTCTGTCGT 57.000 33.333 0.00 0.00 34.68 4.34
4355 6606 7.075741 GTGTGTTTTGTCATATTGTAGTGGAC 58.924 38.462 0.00 0.00 0.00 4.02
4535 6793 1.331447 GTTCGGTGTTGTAAAGCGGTT 59.669 47.619 0.00 0.00 38.96 4.44
4568 6826 8.788806 CCAACTTGTGATATTGGTAAGTGTTTA 58.211 33.333 0.00 0.00 38.47 2.01
4569 6827 7.255801 CCCAACTTGTGATATTGGTAAGTGTTT 60.256 37.037 1.85 0.00 41.18 2.83
4570 6828 6.208599 CCCAACTTGTGATATTGGTAAGTGTT 59.791 38.462 1.85 0.00 41.18 3.32
4571 6829 5.710099 CCCAACTTGTGATATTGGTAAGTGT 59.290 40.000 1.85 0.00 41.18 3.55
4572 6830 5.393027 GCCCAACTTGTGATATTGGTAAGTG 60.393 44.000 1.85 0.00 41.18 3.16
4573 6831 4.705023 GCCCAACTTGTGATATTGGTAAGT 59.295 41.667 1.85 0.00 41.18 2.24
4574 6832 4.949856 AGCCCAACTTGTGATATTGGTAAG 59.050 41.667 1.85 0.00 41.18 2.34
4575 6833 4.704540 CAGCCCAACTTGTGATATTGGTAA 59.295 41.667 1.85 0.00 41.18 2.85
4576 6834 4.269183 CAGCCCAACTTGTGATATTGGTA 58.731 43.478 1.85 0.00 41.18 3.25
4577 6835 3.091545 CAGCCCAACTTGTGATATTGGT 58.908 45.455 1.85 0.00 41.18 3.67
4578 6836 2.159198 GCAGCCCAACTTGTGATATTGG 60.159 50.000 0.00 0.00 42.21 3.16
4579 6837 2.492881 TGCAGCCCAACTTGTGATATTG 59.507 45.455 0.00 0.00 0.00 1.90
4580 6838 2.806434 TGCAGCCCAACTTGTGATATT 58.194 42.857 0.00 0.00 0.00 1.28
4581 6839 2.512692 TGCAGCCCAACTTGTGATAT 57.487 45.000 0.00 0.00 0.00 1.63
4582 6840 2.284754 TTGCAGCCCAACTTGTGATA 57.715 45.000 0.00 0.00 0.00 2.15
4583 6841 3.130264 TTGCAGCCCAACTTGTGAT 57.870 47.368 0.00 0.00 0.00 3.06
4584 6842 4.674306 TTGCAGCCCAACTTGTGA 57.326 50.000 0.00 0.00 0.00 3.58
4591 6849 1.259142 CCCATGATGTTGCAGCCCAA 61.259 55.000 0.00 0.00 0.00 4.12
4592 6850 1.683025 CCCATGATGTTGCAGCCCA 60.683 57.895 0.00 0.00 0.00 5.36
4593 6851 3.085119 GCCCATGATGTTGCAGCCC 62.085 63.158 0.00 0.00 0.00 5.19
4594 6852 2.497770 GCCCATGATGTTGCAGCC 59.502 61.111 0.00 0.00 0.00 4.85
4595 6853 2.103538 CGCCCATGATGTTGCAGC 59.896 61.111 0.00 0.00 0.00 5.25
4596 6854 1.725665 CTCGCCCATGATGTTGCAG 59.274 57.895 0.00 0.00 0.00 4.41
4597 6855 2.409055 GCTCGCCCATGATGTTGCA 61.409 57.895 0.00 0.00 0.00 4.08
4598 6856 2.410469 GCTCGCCCATGATGTTGC 59.590 61.111 0.00 0.00 0.00 4.17
4599 6857 1.721664 CTGGCTCGCCCATGATGTTG 61.722 60.000 5.33 0.00 44.33 3.33
4600 6858 1.452651 CTGGCTCGCCCATGATGTT 60.453 57.895 5.33 0.00 44.33 2.71
4601 6859 1.913951 TTCTGGCTCGCCCATGATGT 61.914 55.000 5.33 0.00 44.33 3.06
4602 6860 1.153107 TTCTGGCTCGCCCATGATG 60.153 57.895 5.33 0.00 44.33 3.07
4603 6861 1.147824 CTTCTGGCTCGCCCATGAT 59.852 57.895 5.33 0.00 44.33 2.45
4604 6862 2.586245 CTTCTGGCTCGCCCATGA 59.414 61.111 5.33 0.00 44.33 3.07
4605 6863 3.207669 GCTTCTGGCTCGCCCATG 61.208 66.667 5.33 0.00 44.33 3.66
4606 6864 3.720601 TGCTTCTGGCTCGCCCAT 61.721 61.111 5.33 0.00 44.33 4.00
4607 6865 4.704833 GTGCTTCTGGCTCGCCCA 62.705 66.667 5.33 0.00 42.79 5.36
4609 6867 4.704833 TGGTGCTTCTGGCTCGCC 62.705 66.667 0.00 0.00 42.39 5.54
4610 6868 1.795170 TTTTGGTGCTTCTGGCTCGC 61.795 55.000 0.00 0.00 42.39 5.03
4611 6869 0.883833 ATTTTGGTGCTTCTGGCTCG 59.116 50.000 0.00 0.00 42.39 5.03
4612 6870 3.062042 CAAATTTTGGTGCTTCTGGCTC 58.938 45.455 0.97 0.00 42.39 4.70
4613 6871 2.224354 CCAAATTTTGGTGCTTCTGGCT 60.224 45.455 18.34 0.00 45.93 4.75
4614 6872 2.145536 CCAAATTTTGGTGCTTCTGGC 58.854 47.619 18.34 0.00 45.93 4.85
4625 6883 4.832590 TTGCTTCAATGCCCAAATTTTG 57.167 36.364 1.99 1.99 0.00 2.44
4626 6884 4.643784 TGTTTGCTTCAATGCCCAAATTTT 59.356 33.333 0.00 0.00 30.89 1.82
4627 6885 4.205587 TGTTTGCTTCAATGCCCAAATTT 58.794 34.783 0.00 0.00 30.89 1.82
4628 6886 3.818180 TGTTTGCTTCAATGCCCAAATT 58.182 36.364 0.00 0.00 30.89 1.82
4629 6887 3.488778 TGTTTGCTTCAATGCCCAAAT 57.511 38.095 0.00 0.00 30.89 2.32
4630 6888 2.996249 TGTTTGCTTCAATGCCCAAA 57.004 40.000 0.00 0.00 0.00 3.28
4631 6889 2.996249 TTGTTTGCTTCAATGCCCAA 57.004 40.000 0.00 0.00 0.00 4.12
4632 6890 3.139850 CAATTGTTTGCTTCAATGCCCA 58.860 40.909 0.00 0.00 35.95 5.36
4633 6891 3.817148 CAATTGTTTGCTTCAATGCCC 57.183 42.857 0.00 0.00 35.95 5.36
4644 6902 4.987912 ACCGTAAGATTTGGCAATTGTTTG 59.012 37.500 7.40 4.20 43.02 2.93
4645 6903 5.208463 ACCGTAAGATTTGGCAATTGTTT 57.792 34.783 7.40 1.96 43.02 2.83
4646 6904 4.321675 GGACCGTAAGATTTGGCAATTGTT 60.322 41.667 7.40 5.22 43.02 2.83
4647 6905 3.192633 GGACCGTAAGATTTGGCAATTGT 59.807 43.478 7.40 0.00 43.02 2.71
4648 6906 3.192422 TGGACCGTAAGATTTGGCAATTG 59.808 43.478 0.00 0.00 43.02 2.32
4649 6907 3.426615 TGGACCGTAAGATTTGGCAATT 58.573 40.909 0.00 0.00 43.02 2.32
4650 6908 3.016736 CTGGACCGTAAGATTTGGCAAT 58.983 45.455 0.00 0.00 43.02 3.56
4651 6909 2.432444 CTGGACCGTAAGATTTGGCAA 58.568 47.619 0.00 0.00 43.02 4.52
4652 6910 1.948611 GCTGGACCGTAAGATTTGGCA 60.949 52.381 0.00 0.00 43.02 4.92
4653 6911 0.733150 GCTGGACCGTAAGATTTGGC 59.267 55.000 0.00 0.00 43.02 4.52
4654 6912 2.403252 AGCTGGACCGTAAGATTTGG 57.597 50.000 0.00 0.00 43.02 3.28
4655 6913 5.873179 TTTTAGCTGGACCGTAAGATTTG 57.127 39.130 0.00 0.00 43.02 2.32
4701 6959 2.706890 ACGTCGACCATGCCTATTTTT 58.293 42.857 10.58 0.00 0.00 1.94
4702 6960 2.396590 ACGTCGACCATGCCTATTTT 57.603 45.000 10.58 0.00 0.00 1.82
4703 6961 2.006888 CAACGTCGACCATGCCTATTT 58.993 47.619 10.58 0.00 0.00 1.40
4704 6962 1.651987 CAACGTCGACCATGCCTATT 58.348 50.000 10.58 0.00 0.00 1.73
4705 6963 0.179084 CCAACGTCGACCATGCCTAT 60.179 55.000 10.58 0.00 0.00 2.57
4706 6964 1.216977 CCAACGTCGACCATGCCTA 59.783 57.895 10.58 0.00 0.00 3.93
4707 6965 2.047274 CCAACGTCGACCATGCCT 60.047 61.111 10.58 0.00 0.00 4.75
4708 6966 1.964373 AACCAACGTCGACCATGCC 60.964 57.895 10.58 0.00 0.00 4.40
4709 6967 1.206578 CAACCAACGTCGACCATGC 59.793 57.895 10.58 0.00 0.00 4.06
4710 6968 1.785768 TACAACCAACGTCGACCATG 58.214 50.000 10.58 9.06 0.00 3.66
4711 6969 2.529780 TTACAACCAACGTCGACCAT 57.470 45.000 10.58 0.00 0.00 3.55
4712 6970 1.932511 GTTTACAACCAACGTCGACCA 59.067 47.619 10.58 0.00 0.00 4.02
4713 6971 2.204237 AGTTTACAACCAACGTCGACC 58.796 47.619 10.58 0.00 0.00 4.79
4714 6972 5.190342 GTTTAGTTTACAACCAACGTCGAC 58.810 41.667 5.18 5.18 0.00 4.20
4715 6973 4.867047 TGTTTAGTTTACAACCAACGTCGA 59.133 37.500 0.00 0.00 31.10 4.20
4716 6974 5.141355 TGTTTAGTTTACAACCAACGTCG 57.859 39.130 0.00 0.00 31.10 5.12
4717 6975 7.854534 AGTATGTTTAGTTTACAACCAACGTC 58.145 34.615 0.00 0.00 30.86 4.34
4718 6976 7.790823 AGTATGTTTAGTTTACAACCAACGT 57.209 32.000 0.00 0.00 32.26 3.99
4740 6998 9.804758 TTTGAAACCGATGTGTTAATTTTAAGT 57.195 25.926 0.00 0.00 0.00 2.24
4769 7027 9.586732 TGCTTGCCTATATGGTTCTAAAATTAT 57.413 29.630 0.00 0.00 38.35 1.28
4770 7028 8.988546 TGCTTGCCTATATGGTTCTAAAATTA 57.011 30.769 0.00 0.00 38.35 1.40
4771 7029 7.896383 TGCTTGCCTATATGGTTCTAAAATT 57.104 32.000 0.00 0.00 38.35 1.82
4772 7030 9.759473 ATATGCTTGCCTATATGGTTCTAAAAT 57.241 29.630 0.00 0.00 38.35 1.82
4773 7031 9.586732 AATATGCTTGCCTATATGGTTCTAAAA 57.413 29.630 0.00 0.00 38.35 1.52
4774 7032 9.231297 GAATATGCTTGCCTATATGGTTCTAAA 57.769 33.333 0.00 0.00 38.35 1.85
4775 7033 8.605947 AGAATATGCTTGCCTATATGGTTCTAA 58.394 33.333 0.00 0.00 38.35 2.10
4776 7034 8.150827 AGAATATGCTTGCCTATATGGTTCTA 57.849 34.615 0.00 0.00 38.35 2.10
4777 7035 7.025520 AGAATATGCTTGCCTATATGGTTCT 57.974 36.000 0.00 0.00 38.35 3.01
4778 7036 7.693969 AAGAATATGCTTGCCTATATGGTTC 57.306 36.000 0.00 0.00 38.35 3.62
4779 7037 7.831193 CCTAAGAATATGCTTGCCTATATGGTT 59.169 37.037 6.17 0.00 38.35 3.67
4780 7038 7.182749 TCCTAAGAATATGCTTGCCTATATGGT 59.817 37.037 6.17 0.00 38.35 3.55
4781 7039 7.568349 TCCTAAGAATATGCTTGCCTATATGG 58.432 38.462 6.17 0.00 39.35 2.74
4782 7040 8.659925 CTCCTAAGAATATGCTTGCCTATATG 57.340 38.462 6.17 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.