Multiple sequence alignment - TraesCS4D01G360600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G360600 chr4D 100.000 3405 0 0 1 3405 507558405 507561809 0.000000e+00 6288.0
1 TraesCS4D01G360600 chr4D 91.125 800 67 4 2608 3405 44479154 44478357 0.000000e+00 1081.0
2 TraesCS4D01G360600 chr4D 97.619 42 1 0 2563 2604 474564877 474564836 4.710000e-09 73.1
3 TraesCS4D01G360600 chr5A 91.300 931 50 13 1542 2450 691677636 691676715 0.000000e+00 1242.0
4 TraesCS4D01G360600 chr5A 89.574 940 65 21 443 1357 691678597 691677666 0.000000e+00 1162.0
5 TraesCS4D01G360600 chr5A 84.651 430 34 15 1 410 691679012 691678595 1.900000e-107 399.0
6 TraesCS4D01G360600 chr5A 84.058 138 20 2 1001 1137 451259951 451260087 7.670000e-27 132.0
7 TraesCS4D01G360600 chr5A 93.258 89 6 0 1864 1952 451389467 451389555 7.670000e-27 132.0
8 TraesCS4D01G360600 chr4B 89.244 939 61 15 1542 2454 654043438 654042514 0.000000e+00 1138.0
9 TraesCS4D01G360600 chr4B 84.942 777 77 22 606 1358 654044225 654043465 0.000000e+00 750.0
10 TraesCS4D01G360600 chr4B 85.908 369 30 10 32 380 622314543 622314909 1.150000e-99 374.0
11 TraesCS4D01G360600 chr4B 84.511 368 35 10 32 379 613309566 613309201 9.050000e-91 344.0
12 TraesCS4D01G360600 chr4B 91.860 172 8 4 390 560 654044403 654044237 5.680000e-58 235.0
13 TraesCS4D01G360600 chr4B 95.238 42 2 0 2560 2601 432817289 432817330 2.190000e-07 67.6
14 TraesCS4D01G360600 chr2D 92.240 799 60 2 2608 3405 198776539 198775742 0.000000e+00 1131.0
15 TraesCS4D01G360600 chr2D 90.698 86 8 0 1865 1950 424015075 424014990 7.720000e-22 115.0
16 TraesCS4D01G360600 chr1D 91.625 800 62 5 2608 3405 225088185 225088981 0.000000e+00 1101.0
17 TraesCS4D01G360600 chr1D 91.058 794 68 3 2614 3405 257791868 257792660 0.000000e+00 1070.0
18 TraesCS4D01G360600 chr1D 90.625 800 71 4 2608 3405 492567503 492566706 0.000000e+00 1059.0
19 TraesCS4D01G360600 chr1D 93.333 45 3 0 2560 2604 354566048 354566004 2.190000e-07 67.6
20 TraesCS4D01G360600 chr5D 91.250 800 67 3 2608 3405 101713363 101714161 0.000000e+00 1086.0
21 TraesCS4D01G360600 chr5D 90.738 799 71 3 2608 3405 157844694 157843898 0.000000e+00 1062.0
22 TraesCS4D01G360600 chr5D 87.681 138 15 2 1001 1137 350952382 350952518 3.520000e-35 159.0
23 TraesCS4D01G360600 chr5D 91.892 111 9 0 1688 1798 350953735 350953845 4.550000e-34 156.0
24 TraesCS4D01G360600 chr5D 76.846 298 39 17 1864 2152 350953949 350954225 1.270000e-29 141.0
25 TraesCS4D01G360600 chr5D 96.774 31 1 0 1377 1407 134339168 134339138 6.000000e-03 52.8
26 TraesCS4D01G360600 chr7D 91.147 802 68 3 2606 3405 25580028 25580828 0.000000e+00 1085.0
27 TraesCS4D01G360600 chr7D 90.625 800 72 3 2608 3405 55963056 55963854 0.000000e+00 1059.0
28 TraesCS4D01G360600 chr7D 84.840 376 34 14 26 380 438692022 438691649 1.160000e-94 357.0
29 TraesCS4D01G360600 chr7D 100.000 31 0 0 1377 1407 518085864 518085834 1.320000e-04 58.4
30 TraesCS4D01G360600 chr6B 88.418 354 33 7 34 380 680158350 680157998 1.460000e-113 420.0
31 TraesCS4D01G360600 chr6B 85.870 368 30 13 33 380 347744191 347744556 4.150000e-99 372.0
32 TraesCS4D01G360600 chr6B 85.294 374 34 9 32 385 18004741 18005113 1.930000e-97 366.0
33 TraesCS4D01G360600 chr3D 87.675 357 37 5 31 380 358635119 358635475 3.160000e-110 409.0
34 TraesCS4D01G360600 chr3D 94.040 151 8 1 1649 1798 395065186 395065036 9.510000e-56 228.0
35 TraesCS4D01G360600 chr3D 74.138 638 93 42 1859 2440 395064938 395064317 7.450000e-47 198.0
36 TraesCS4D01G360600 chr3D 81.579 114 18 2 1361 1471 564808647 564808534 1.300000e-14 91.6
37 TraesCS4D01G360600 chr6D 86.158 354 41 6 33 380 454211739 454211388 3.210000e-100 375.0
38 TraesCS4D01G360600 chr6D 84.566 311 27 11 89 379 403403842 403404151 4.300000e-74 289.0
39 TraesCS4D01G360600 chr6D 95.238 42 2 0 2560 2601 399221358 399221399 2.190000e-07 67.6
40 TraesCS4D01G360600 chr6A 84.533 375 32 19 28 380 375945928 375945558 6.990000e-92 348.0
41 TraesCS4D01G360600 chr1A 83.880 366 38 10 32 377 532643800 532644164 2.530000e-86 329.0
42 TraesCS4D01G360600 chr1A 93.333 45 3 0 2557 2601 441841466 441841510 2.190000e-07 67.6
43 TraesCS4D01G360600 chr4A 83.740 369 36 12 33 380 564728137 564728502 9.110000e-86 327.0
44 TraesCS4D01G360600 chr4A 95.349 43 2 0 2562 2604 666434845 666434803 6.100000e-08 69.4
45 TraesCS4D01G360600 chr3A 92.667 150 10 1 1649 1797 514612179 514612030 7.400000e-52 215.0
46 TraesCS4D01G360600 chr3A 78.778 311 43 15 1864 2152 514611936 514611627 1.610000e-43 187.0
47 TraesCS4D01G360600 chr3A 88.489 139 14 2 1001 1138 514612758 514612621 2.100000e-37 167.0
48 TraesCS4D01G360600 chr3B 90.728 151 13 1 1649 1798 519778005 519777855 2.070000e-47 200.0
49 TraesCS4D01G360600 chr3B 78.864 317 42 15 1859 2152 519777761 519777447 1.250000e-44 191.0
50 TraesCS4D01G360600 chr3B 89.209 139 13 2 1001 1138 519778591 519778454 4.520000e-39 172.0
51 TraesCS4D01G360600 chr2B 90.698 86 8 0 1865 1950 498310555 498310470 7.720000e-22 115.0
52 TraesCS4D01G360600 chr2B 95.349 43 2 0 2563 2605 469188484 469188442 6.100000e-08 69.4
53 TraesCS4D01G360600 chr2B 93.333 45 2 1 2557 2601 453237208 453237251 7.890000e-07 65.8
54 TraesCS4D01G360600 chr2B 87.719 57 3 4 2549 2601 660312695 660312639 2.840000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G360600 chr4D 507558405 507561809 3404 False 6288.000000 6288 100.000000 1 3405 1 chr4D.!!$F1 3404
1 TraesCS4D01G360600 chr4D 44478357 44479154 797 True 1081.000000 1081 91.125000 2608 3405 1 chr4D.!!$R1 797
2 TraesCS4D01G360600 chr5A 691676715 691679012 2297 True 934.333333 1242 88.508333 1 2450 3 chr5A.!!$R1 2449
3 TraesCS4D01G360600 chr4B 654042514 654044403 1889 True 707.666667 1138 88.682000 390 2454 3 chr4B.!!$R2 2064
4 TraesCS4D01G360600 chr2D 198775742 198776539 797 True 1131.000000 1131 92.240000 2608 3405 1 chr2D.!!$R1 797
5 TraesCS4D01G360600 chr1D 225088185 225088981 796 False 1101.000000 1101 91.625000 2608 3405 1 chr1D.!!$F1 797
6 TraesCS4D01G360600 chr1D 257791868 257792660 792 False 1070.000000 1070 91.058000 2614 3405 1 chr1D.!!$F2 791
7 TraesCS4D01G360600 chr1D 492566706 492567503 797 True 1059.000000 1059 90.625000 2608 3405 1 chr1D.!!$R2 797
8 TraesCS4D01G360600 chr5D 101713363 101714161 798 False 1086.000000 1086 91.250000 2608 3405 1 chr5D.!!$F1 797
9 TraesCS4D01G360600 chr5D 157843898 157844694 796 True 1062.000000 1062 90.738000 2608 3405 1 chr5D.!!$R2 797
10 TraesCS4D01G360600 chr7D 25580028 25580828 800 False 1085.000000 1085 91.147000 2606 3405 1 chr7D.!!$F1 799
11 TraesCS4D01G360600 chr7D 55963056 55963854 798 False 1059.000000 1059 90.625000 2608 3405 1 chr7D.!!$F2 797
12 TraesCS4D01G360600 chr3D 395064317 395065186 869 True 213.000000 228 84.089000 1649 2440 2 chr3D.!!$R2 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 585 0.179073 ATGTAGCTGATGACCGGTGC 60.179 55.0 14.63 9.25 0.0 5.01 F
1313 1366 0.101040 TTAAGTATGTCCCGGCGTCG 59.899 55.0 0.29 0.29 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1478 0.107703 GCACGGATCTCCACATTGGA 60.108 55.0 0.0 0.0 45.98 3.53 R
2595 2774 0.108963 CCCCAACACCCTTCGTACAA 59.891 55.0 0.0 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.922950 GCACGTAGTCGACCCACCA 61.923 63.158 13.01 0.00 41.61 4.17
71 72 1.214589 CGTAGTCGACCCACCAAGG 59.785 63.158 13.01 0.00 39.71 3.61
84 85 2.288395 CCACCAAGGAACAAGCAATCAC 60.288 50.000 0.00 0.00 41.22 3.06
86 87 3.030291 ACCAAGGAACAAGCAATCACAA 58.970 40.909 0.00 0.00 0.00 3.33
98 99 3.503363 AGCAATCACAACACAATGACGAT 59.497 39.130 0.00 0.00 0.00 3.73
100 101 4.788100 GCAATCACAACACAATGACGATAC 59.212 41.667 0.00 0.00 0.00 2.24
107 108 3.966154 ACACAATGACGATACCGAGATC 58.034 45.455 0.00 0.00 39.50 2.75
114 115 6.576662 ATGACGATACCGAGATCTGTTAAT 57.423 37.500 0.00 0.00 39.50 1.40
141 142 3.921521 CGAACTCGCCTACTCCCT 58.078 61.111 0.00 0.00 0.00 4.20
142 143 1.433879 CGAACTCGCCTACTCCCTG 59.566 63.158 0.00 0.00 0.00 4.45
143 144 1.313812 CGAACTCGCCTACTCCCTGT 61.314 60.000 0.00 0.00 0.00 4.00
148 149 2.586792 GCCTACTCCCTGTGGCAG 59.413 66.667 0.00 0.00 40.29 4.85
157 158 1.079819 CCTGTGGCAGTGACTACGG 60.080 63.158 0.00 0.00 0.00 4.02
158 159 1.079819 CTGTGGCAGTGACTACGGG 60.080 63.158 0.00 0.00 0.00 5.28
231 245 3.938653 CGTGCCAGTCGCTATCTAA 57.061 52.632 0.00 0.00 38.78 2.10
235 249 0.940047 GCCAGTCGCTATCTAACCGC 60.940 60.000 0.00 0.00 0.00 5.68
249 263 1.456726 ACCGCCATGGGTTACAACA 59.543 52.632 15.13 0.00 44.64 3.33
263 277 1.379044 CAACATGGGGTGCCTCCTC 60.379 63.158 0.00 0.00 37.17 3.71
282 298 4.713792 CTCATATAAGAGGCCAAAGGGT 57.286 45.455 5.01 0.00 36.17 4.34
284 300 3.394606 TCATATAAGAGGCCAAAGGGTCC 59.605 47.826 5.01 0.00 40.78 4.46
285 301 1.987080 ATAAGAGGCCAAAGGGTCCT 58.013 50.000 5.01 0.00 40.78 3.85
286 302 0.991920 TAAGAGGCCAAAGGGTCCTG 59.008 55.000 5.01 0.00 40.78 3.86
301 321 2.044555 CCTGCCGACTCCGACACTA 61.045 63.158 0.00 0.00 38.22 2.74
328 348 2.966915 TCCTACCCACACTACAACACT 58.033 47.619 0.00 0.00 0.00 3.55
335 355 3.070446 CCCACACTACAACACTAAGTCCA 59.930 47.826 0.00 0.00 0.00 4.02
336 356 4.443739 CCCACACTACAACACTAAGTCCAA 60.444 45.833 0.00 0.00 0.00 3.53
337 357 5.120399 CCACACTACAACACTAAGTCCAAA 58.880 41.667 0.00 0.00 0.00 3.28
338 358 5.007332 CCACACTACAACACTAAGTCCAAAC 59.993 44.000 0.00 0.00 0.00 2.93
339 359 4.807304 ACACTACAACACTAAGTCCAAACG 59.193 41.667 0.00 0.00 0.00 3.60
340 360 4.807304 CACTACAACACTAAGTCCAAACGT 59.193 41.667 0.00 0.00 0.00 3.99
341 361 5.978919 CACTACAACACTAAGTCCAAACGTA 59.021 40.000 0.00 0.00 0.00 3.57
342 362 5.979517 ACTACAACACTAAGTCCAAACGTAC 59.020 40.000 0.00 0.00 0.00 3.67
343 363 4.122046 ACAACACTAAGTCCAAACGTACC 58.878 43.478 0.00 0.00 0.00 3.34
344 364 4.141869 ACAACACTAAGTCCAAACGTACCT 60.142 41.667 0.00 0.00 0.00 3.08
351 371 2.056577 GTCCAAACGTACCTCAACTCG 58.943 52.381 0.00 0.00 0.00 4.18
380 400 8.471457 CAAAATATTCGACACAAACTCAACAAG 58.529 33.333 0.00 0.00 0.00 3.16
408 428 8.631480 TTAGAGTATTTTGGAAAAGAAGGGTC 57.369 34.615 0.00 0.00 0.00 4.46
409 429 6.610830 AGAGTATTTTGGAAAAGAAGGGTCA 58.389 36.000 0.00 0.00 0.00 4.02
410 430 6.490381 AGAGTATTTTGGAAAAGAAGGGTCAC 59.510 38.462 0.00 0.00 0.00 3.67
411 431 4.955811 ATTTTGGAAAAGAAGGGTCACC 57.044 40.909 0.00 0.00 0.00 4.02
412 432 2.375014 TTGGAAAAGAAGGGTCACCC 57.625 50.000 3.85 3.85 45.90 4.61
428 448 0.251922 ACCCTGGCTTGTGCATCATT 60.252 50.000 0.00 0.00 41.91 2.57
429 449 1.005805 ACCCTGGCTTGTGCATCATTA 59.994 47.619 0.00 0.00 41.91 1.90
534 555 3.844211 TGCCTGTTAACTAGAGGGAATGT 59.156 43.478 7.22 0.00 0.00 2.71
560 581 2.892374 TGTTCATGTAGCTGATGACCG 58.108 47.619 9.21 0.00 29.39 4.79
561 582 2.205074 GTTCATGTAGCTGATGACCGG 58.795 52.381 0.00 0.00 29.39 5.28
562 583 1.485124 TCATGTAGCTGATGACCGGT 58.515 50.000 6.92 6.92 0.00 5.28
563 584 1.136891 TCATGTAGCTGATGACCGGTG 59.863 52.381 14.63 0.00 0.00 4.94
564 585 0.179073 ATGTAGCTGATGACCGGTGC 60.179 55.000 14.63 9.25 0.00 5.01
635 656 7.803659 GTCAAGTTCAATCTAGTTTTAAGCACC 59.196 37.037 0.00 0.00 0.00 5.01
661 682 1.875514 TCAAGTGTGAGCAAGCATGTC 59.124 47.619 0.00 0.00 0.00 3.06
752 777 4.574674 TGGATGTGAATGAAAGCCTAGT 57.425 40.909 0.00 0.00 0.00 2.57
756 781 4.503741 TGTGAATGAAAGCCTAGTTTGC 57.496 40.909 0.00 0.00 0.00 3.68
759 784 3.188460 TGAATGAAAGCCTAGTTTGCGAC 59.812 43.478 0.00 0.00 0.00 5.19
760 785 2.248280 TGAAAGCCTAGTTTGCGACA 57.752 45.000 0.00 0.00 0.00 4.35
764 789 3.831715 AAGCCTAGTTTGCGACAATTC 57.168 42.857 0.00 0.00 0.00 2.17
766 791 3.412386 AGCCTAGTTTGCGACAATTCTT 58.588 40.909 0.00 0.00 0.00 2.52
767 792 4.575885 AGCCTAGTTTGCGACAATTCTTA 58.424 39.130 0.00 0.00 0.00 2.10
768 793 5.001232 AGCCTAGTTTGCGACAATTCTTAA 58.999 37.500 0.00 0.00 0.00 1.85
780 805 8.826710 TGCGACAATTCTTAATAATTAGGTCTG 58.173 33.333 11.60 8.31 0.00 3.51
871 898 3.060940 CGTTGGTTCTCAATCGATCGATG 60.061 47.826 29.99 22.18 37.73 3.84
964 991 4.704103 TCTCACCTCAGCCGGCCT 62.704 66.667 26.15 7.86 0.00 5.19
1079 1106 3.771160 GGACGCCATCCTCACCGT 61.771 66.667 0.00 0.00 45.22 4.83
1122 1149 1.063006 CGGCAATTGGATGACGCTG 59.937 57.895 7.72 0.00 46.06 5.18
1125 1152 1.660560 GCAATTGGATGACGCTGCCT 61.661 55.000 7.72 0.00 0.00 4.75
1153 1180 2.159517 GCAGGTGGTTAATTTGCTCTCG 60.160 50.000 0.00 0.00 0.00 4.04
1159 1186 3.055385 TGGTTAATTTGCTCTCGCCTAGT 60.055 43.478 0.00 0.00 34.43 2.57
1160 1187 4.160814 TGGTTAATTTGCTCTCGCCTAGTA 59.839 41.667 0.00 0.00 34.43 1.82
1161 1188 5.163343 TGGTTAATTTGCTCTCGCCTAGTAT 60.163 40.000 0.00 0.00 34.43 2.12
1162 1189 5.758784 GGTTAATTTGCTCTCGCCTAGTATT 59.241 40.000 0.00 0.00 34.43 1.89
1163 1190 6.073711 GGTTAATTTGCTCTCGCCTAGTATTC 60.074 42.308 0.00 0.00 34.43 1.75
1184 1215 3.244345 TCATACTACTAATTTGTGCGCGC 59.756 43.478 27.26 27.26 0.00 6.86
1187 1218 0.791422 TACTAATTTGTGCGCGCGTT 59.209 45.000 32.35 18.60 0.00 4.84
1190 1221 0.317103 TAATTTGTGCGCGCGTTTGT 60.317 45.000 32.35 12.29 0.00 2.83
1191 1222 1.806251 AATTTGTGCGCGCGTTTGTG 61.806 50.000 32.35 1.79 0.00 3.33
1206 1237 4.599047 CGTTTGTGGACGGTTTTGAATTA 58.401 39.130 0.00 0.00 39.27 1.40
1208 1239 5.584442 GTTTGTGGACGGTTTTGAATTACT 58.416 37.500 0.00 0.00 0.00 2.24
1209 1240 5.427036 TTGTGGACGGTTTTGAATTACTC 57.573 39.130 0.00 0.00 0.00 2.59
1210 1241 4.452825 TGTGGACGGTTTTGAATTACTCA 58.547 39.130 0.00 0.00 0.00 3.41
1211 1242 4.882427 TGTGGACGGTTTTGAATTACTCAA 59.118 37.500 0.00 0.00 42.48 3.02
1214 1256 6.001460 TGGACGGTTTTGAATTACTCAATCT 58.999 36.000 0.00 0.00 43.64 2.40
1216 1258 6.072673 GGACGGTTTTGAATTACTCAATCTGT 60.073 38.462 0.00 0.00 43.64 3.41
1224 1266 7.770801 TGAATTACTCAATCTGTCATTACCG 57.229 36.000 0.00 0.00 0.00 4.02
1240 1293 7.174080 TGTCATTACCGAAATCACTGAAATTCA 59.826 33.333 0.00 0.00 0.00 2.57
1241 1294 8.020819 GTCATTACCGAAATCACTGAAATTCAA 58.979 33.333 0.00 0.00 0.00 2.69
1274 1327 3.173953 TCATTTCAGCCCAAGGACAAT 57.826 42.857 0.00 0.00 0.00 2.71
1292 1345 9.492973 AAGGACAATAATTTCCACTTGAATTTG 57.507 29.630 0.00 0.00 33.92 2.32
1306 1359 8.190784 CCACTTGAATTTGATTAAGTATGTCCC 58.809 37.037 0.00 0.00 32.53 4.46
1308 1361 6.935741 TGAATTTGATTAAGTATGTCCCGG 57.064 37.500 0.00 0.00 0.00 5.73
1310 1363 2.519377 TGATTAAGTATGTCCCGGCG 57.481 50.000 0.00 0.00 0.00 6.46
1313 1366 0.101040 TTAAGTATGTCCCGGCGTCG 59.899 55.000 0.29 0.29 0.00 5.12
1315 1368 1.880819 AAGTATGTCCCGGCGTCGTT 61.881 55.000 9.28 0.00 33.95 3.85
1316 1369 2.162754 GTATGTCCCGGCGTCGTTG 61.163 63.158 9.28 0.00 33.95 4.10
1333 1386 2.605338 CGTTGGAATGTTTGCTCACTGG 60.605 50.000 0.00 0.00 0.00 4.00
1341 1394 3.754965 TGTTTGCTCACTGGCTAGATTT 58.245 40.909 3.17 0.00 0.00 2.17
1347 1400 2.019249 TCACTGGCTAGATTTGCATGC 58.981 47.619 11.82 11.82 0.00 4.06
1348 1401 1.019673 ACTGGCTAGATTTGCATGCG 58.980 50.000 14.09 0.00 0.00 4.73
1351 1404 0.734889 GGCTAGATTTGCATGCGTGT 59.265 50.000 14.09 0.05 0.00 4.49
1388 1441 8.433421 GATTGTTAAATCCCAGTCGATTAAGA 57.567 34.615 0.00 0.00 36.90 2.10
1389 1442 8.980481 ATTGTTAAATCCCAGTCGATTAAGAT 57.020 30.769 0.00 0.00 32.12 2.40
1390 1443 8.801882 TTGTTAAATCCCAGTCGATTAAGATT 57.198 30.769 0.00 0.00 32.12 2.40
1391 1444 8.801882 TGTTAAATCCCAGTCGATTAAGATTT 57.198 30.769 16.38 16.38 37.60 2.17
1392 1445 9.893634 TGTTAAATCCCAGTCGATTAAGATTTA 57.106 29.630 15.00 15.00 35.94 1.40
1395 1448 7.803279 AATCCCAGTCGATTAAGATTTAACC 57.197 36.000 0.00 0.00 30.59 2.85
1396 1449 6.302535 TCCCAGTCGATTAAGATTTAACCA 57.697 37.500 0.00 0.00 0.00 3.67
1397 1450 6.713276 TCCCAGTCGATTAAGATTTAACCAA 58.287 36.000 0.00 0.00 0.00 3.67
1398 1451 6.821665 TCCCAGTCGATTAAGATTTAACCAAG 59.178 38.462 0.00 0.00 0.00 3.61
1399 1452 6.598064 CCCAGTCGATTAAGATTTAACCAAGT 59.402 38.462 0.00 0.00 0.00 3.16
1400 1453 7.201617 CCCAGTCGATTAAGATTTAACCAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
1401 1454 7.549488 CCAGTCGATTAAGATTTAACCAAGTCT 59.451 37.037 0.00 0.00 32.49 3.24
1402 1455 8.596380 CAGTCGATTAAGATTTAACCAAGTCTC 58.404 37.037 0.00 0.00 30.05 3.36
1403 1456 8.311836 AGTCGATTAAGATTTAACCAAGTCTCA 58.688 33.333 0.00 0.00 30.05 3.27
1404 1457 8.596380 GTCGATTAAGATTTAACCAAGTCTCAG 58.404 37.037 0.00 0.00 30.05 3.35
1405 1458 8.311836 TCGATTAAGATTTAACCAAGTCTCAGT 58.688 33.333 0.00 0.00 30.05 3.41
1406 1459 8.596380 CGATTAAGATTTAACCAAGTCTCAGTC 58.404 37.037 0.00 0.00 30.05 3.51
1407 1460 7.884816 TTAAGATTTAACCAAGTCTCAGTCG 57.115 36.000 0.00 0.00 30.05 4.18
1408 1461 5.723672 AGATTTAACCAAGTCTCAGTCGA 57.276 39.130 0.00 0.00 0.00 4.20
1409 1462 6.287589 AGATTTAACCAAGTCTCAGTCGAT 57.712 37.500 0.00 0.00 0.00 3.59
1410 1463 6.102663 AGATTTAACCAAGTCTCAGTCGATG 58.897 40.000 0.00 0.00 0.00 3.84
1411 1464 4.866508 TTAACCAAGTCTCAGTCGATGT 57.133 40.909 0.00 0.00 0.00 3.06
1412 1465 3.753294 AACCAAGTCTCAGTCGATGTT 57.247 42.857 0.00 0.00 0.00 2.71
1413 1466 3.032017 ACCAAGTCTCAGTCGATGTTG 57.968 47.619 0.00 0.00 0.00 3.33
1414 1467 2.365617 ACCAAGTCTCAGTCGATGTTGT 59.634 45.455 0.00 0.00 0.00 3.32
1415 1468 3.572682 ACCAAGTCTCAGTCGATGTTGTA 59.427 43.478 0.00 0.00 0.00 2.41
1416 1469 4.220821 ACCAAGTCTCAGTCGATGTTGTAT 59.779 41.667 0.00 0.00 0.00 2.29
1417 1470 5.171476 CCAAGTCTCAGTCGATGTTGTATT 58.829 41.667 0.00 0.00 0.00 1.89
1418 1471 5.639506 CCAAGTCTCAGTCGATGTTGTATTT 59.360 40.000 0.00 0.00 0.00 1.40
1419 1472 6.401474 CCAAGTCTCAGTCGATGTTGTATTTG 60.401 42.308 0.00 0.00 0.00 2.32
1420 1473 5.784177 AGTCTCAGTCGATGTTGTATTTGT 58.216 37.500 0.00 0.00 0.00 2.83
1421 1474 6.920817 AGTCTCAGTCGATGTTGTATTTGTA 58.079 36.000 0.00 0.00 0.00 2.41
1422 1475 7.375834 AGTCTCAGTCGATGTTGTATTTGTAA 58.624 34.615 0.00 0.00 0.00 2.41
1423 1476 7.542477 AGTCTCAGTCGATGTTGTATTTGTAAG 59.458 37.037 0.00 0.00 0.00 2.34
1424 1477 7.541091 GTCTCAGTCGATGTTGTATTTGTAAGA 59.459 37.037 0.00 0.00 0.00 2.10
1425 1478 8.251026 TCTCAGTCGATGTTGTATTTGTAAGAT 58.749 33.333 0.00 0.00 0.00 2.40
1426 1479 8.407457 TCAGTCGATGTTGTATTTGTAAGATC 57.593 34.615 0.00 0.00 0.00 2.75
1427 1480 7.491372 TCAGTCGATGTTGTATTTGTAAGATCC 59.509 37.037 0.00 0.00 0.00 3.36
1428 1481 7.277760 CAGTCGATGTTGTATTTGTAAGATCCA 59.722 37.037 0.00 0.00 0.00 3.41
1429 1482 7.822334 AGTCGATGTTGTATTTGTAAGATCCAA 59.178 33.333 0.00 0.00 0.00 3.53
1430 1483 8.612619 GTCGATGTTGTATTTGTAAGATCCAAT 58.387 33.333 0.00 0.00 0.00 3.16
1431 1484 8.611757 TCGATGTTGTATTTGTAAGATCCAATG 58.388 33.333 0.00 0.00 0.00 2.82
1432 1485 8.397906 CGATGTTGTATTTGTAAGATCCAATGT 58.602 33.333 0.00 0.00 0.00 2.71
1433 1486 9.507280 GATGTTGTATTTGTAAGATCCAATGTG 57.493 33.333 0.00 0.00 0.00 3.21
1434 1487 7.825681 TGTTGTATTTGTAAGATCCAATGTGG 58.174 34.615 0.00 0.00 39.43 4.17
1444 1497 0.107703 TCCAATGTGGAGATCCGTGC 60.108 55.000 0.00 0.00 42.67 5.34
1445 1498 0.392863 CCAATGTGGAGATCCGTGCA 60.393 55.000 0.00 0.00 40.96 4.57
1446 1499 1.452110 CAATGTGGAGATCCGTGCAA 58.548 50.000 0.00 0.00 39.43 4.08
1447 1500 2.019249 CAATGTGGAGATCCGTGCAAT 58.981 47.619 0.00 0.00 39.43 3.56
1448 1501 2.424601 CAATGTGGAGATCCGTGCAATT 59.575 45.455 0.00 0.00 39.43 2.32
1449 1502 2.198827 TGTGGAGATCCGTGCAATTT 57.801 45.000 0.00 0.00 39.43 1.82
1450 1503 2.513753 TGTGGAGATCCGTGCAATTTT 58.486 42.857 0.00 0.00 39.43 1.82
1451 1504 2.890311 TGTGGAGATCCGTGCAATTTTT 59.110 40.909 0.00 0.00 39.43 1.94
1490 1543 9.554395 TTCTTTTATATGTTGTCACTTGACTGA 57.446 29.630 10.63 0.00 44.99 3.41
1491 1544 9.554395 TCTTTTATATGTTGTCACTTGACTGAA 57.446 29.630 10.63 0.00 44.99 3.02
1493 1546 9.944663 TTTTATATGTTGTCACTTGACTGAAAC 57.055 29.630 10.63 7.35 44.99 2.78
1494 1547 8.902540 TTATATGTTGTCACTTGACTGAAACT 57.097 30.769 10.63 1.47 44.99 2.66
1495 1548 5.741388 ATGTTGTCACTTGACTGAAACTC 57.259 39.130 10.63 0.00 44.99 3.01
1496 1549 4.574892 TGTTGTCACTTGACTGAAACTCA 58.425 39.130 10.63 0.00 44.99 3.41
1512 1565 8.909708 CTGAAACTCAGTCAACTAAGATCTAG 57.090 38.462 0.00 0.00 39.58 2.43
1513 1566 7.316640 TGAAACTCAGTCAACTAAGATCTAGC 58.683 38.462 0.00 0.00 0.00 3.42
1514 1567 7.177568 TGAAACTCAGTCAACTAAGATCTAGCT 59.822 37.037 0.00 0.00 0.00 3.32
1515 1568 6.449635 ACTCAGTCAACTAAGATCTAGCTG 57.550 41.667 0.00 0.00 0.00 4.24
1516 1569 6.184068 ACTCAGTCAACTAAGATCTAGCTGA 58.816 40.000 0.00 0.00 0.00 4.26
1517 1570 6.094881 ACTCAGTCAACTAAGATCTAGCTGAC 59.905 42.308 18.33 18.33 39.59 3.51
1518 1571 6.184068 TCAGTCAACTAAGATCTAGCTGACT 58.816 40.000 20.69 20.69 46.09 3.41
1519 1572 7.339482 TCAGTCAACTAAGATCTAGCTGACTA 58.661 38.462 23.24 15.46 44.46 2.59
1520 1573 7.829706 TCAGTCAACTAAGATCTAGCTGACTAA 59.170 37.037 23.24 14.99 44.46 2.24
1521 1574 7.913297 CAGTCAACTAAGATCTAGCTGACTAAC 59.087 40.741 23.24 9.10 44.46 2.34
1522 1575 7.612244 AGTCAACTAAGATCTAGCTGACTAACA 59.388 37.037 22.83 0.00 44.44 2.41
1523 1576 8.410141 GTCAACTAAGATCTAGCTGACTAACAT 58.590 37.037 18.53 0.00 37.55 2.71
1524 1577 9.628500 TCAACTAAGATCTAGCTGACTAACATA 57.372 33.333 0.00 0.00 0.00 2.29
1525 1578 9.891828 CAACTAAGATCTAGCTGACTAACATAG 57.108 37.037 0.00 0.00 0.00 2.23
1526 1579 8.630054 ACTAAGATCTAGCTGACTAACATAGG 57.370 38.462 0.00 0.00 0.00 2.57
1527 1580 8.441572 ACTAAGATCTAGCTGACTAACATAGGA 58.558 37.037 0.00 0.00 0.00 2.94
1528 1581 7.519032 AAGATCTAGCTGACTAACATAGGAC 57.481 40.000 0.00 0.00 0.00 3.85
1529 1582 6.848069 AGATCTAGCTGACTAACATAGGACT 58.152 40.000 0.00 0.00 0.00 3.85
1530 1583 6.940298 AGATCTAGCTGACTAACATAGGACTC 59.060 42.308 0.00 0.00 0.00 3.36
1531 1584 6.002653 TCTAGCTGACTAACATAGGACTCA 57.997 41.667 0.00 0.00 0.00 3.41
1532 1585 6.058833 TCTAGCTGACTAACATAGGACTCAG 58.941 44.000 0.00 0.00 32.57 3.35
1533 1586 4.861196 AGCTGACTAACATAGGACTCAGA 58.139 43.478 7.35 0.00 31.62 3.27
1534 1587 4.642885 AGCTGACTAACATAGGACTCAGAC 59.357 45.833 7.35 1.58 31.62 3.51
1535 1588 4.202070 GCTGACTAACATAGGACTCAGACC 60.202 50.000 7.35 0.00 31.62 3.85
1536 1589 5.194473 TGACTAACATAGGACTCAGACCT 57.806 43.478 0.04 0.04 41.05 3.85
1537 1590 6.323210 TGACTAACATAGGACTCAGACCTA 57.677 41.667 5.29 5.29 42.99 3.08
1579 1632 5.560966 AGTACAAAACACCTCAAACACAG 57.439 39.130 0.00 0.00 0.00 3.66
1580 1633 5.007682 AGTACAAAACACCTCAAACACAGT 58.992 37.500 0.00 0.00 0.00 3.55
1581 1634 6.174760 AGTACAAAACACCTCAAACACAGTA 58.825 36.000 0.00 0.00 0.00 2.74
1593 1652 8.073768 ACCTCAAACACAGTAAAAATTACATCG 58.926 33.333 3.37 0.00 0.00 3.84
1594 1653 7.537306 CCTCAAACACAGTAAAAATTACATCGG 59.463 37.037 3.37 0.00 0.00 4.18
1595 1654 8.155821 TCAAACACAGTAAAAATTACATCGGA 57.844 30.769 3.37 0.00 0.00 4.55
1596 1655 8.622157 TCAAACACAGTAAAAATTACATCGGAA 58.378 29.630 3.37 0.00 0.00 4.30
1597 1656 9.405587 CAAACACAGTAAAAATTACATCGGAAT 57.594 29.630 3.37 0.00 0.00 3.01
1598 1657 8.964420 AACACAGTAAAAATTACATCGGAATG 57.036 30.769 3.37 0.00 38.93 2.67
1600 1659 8.573035 ACACAGTAAAAATTACATCGGAATGTT 58.427 29.630 3.37 0.00 43.74 2.71
1601 1660 9.061610 CACAGTAAAAATTACATCGGAATGTTC 57.938 33.333 3.37 0.00 43.74 3.18
1602 1661 9.010029 ACAGTAAAAATTACATCGGAATGTTCT 57.990 29.630 3.37 0.00 43.74 3.01
1603 1662 9.840427 CAGTAAAAATTACATCGGAATGTTCTT 57.160 29.630 3.37 0.00 43.74 2.52
1616 1675 5.938125 CGGAATGTTCTTCTTTCCCTTTCTA 59.062 40.000 6.84 0.00 43.32 2.10
1618 1677 7.361286 CGGAATGTTCTTCTTTCCCTTTCTAAG 60.361 40.741 6.84 0.00 43.32 2.18
1619 1678 7.448777 GGAATGTTCTTCTTTCCCTTTCTAAGT 59.551 37.037 0.00 0.00 41.60 2.24
1620 1679 9.503399 GAATGTTCTTCTTTCCCTTTCTAAGTA 57.497 33.333 0.00 0.00 0.00 2.24
1621 1680 9.862149 AATGTTCTTCTTTCCCTTTCTAAGTAA 57.138 29.630 0.00 0.00 0.00 2.24
1651 1717 3.557228 TGTATGTGTATGCCTGCATGA 57.443 42.857 14.66 0.00 37.82 3.07
1804 1871 6.039493 TCGGAAGCAAGTATATATAGCTAGCC 59.961 42.308 12.13 8.74 34.66 3.93
1815 1882 4.230603 GCTAGCCAGCTGCATGAA 57.769 55.556 8.66 0.00 44.93 2.57
1826 1902 2.961062 AGCTGCATGAACCTCTTTGTTT 59.039 40.909 1.02 0.00 0.00 2.83
1954 2073 1.063183 AGCTCAAGAAGAGGCACCTT 58.937 50.000 0.00 0.00 44.86 3.50
2059 2205 2.182030 CCACCTCTCGACGAAGCC 59.818 66.667 0.00 0.00 0.00 4.35
2140 2286 1.228228 GCTCATGGGGCTCATCCAA 59.772 57.895 0.00 0.00 37.87 3.53
2154 2312 2.370459 ATCCAACAGCAGCCCACCAA 62.370 55.000 0.00 0.00 0.00 3.67
2189 2347 1.794785 TCATCGTCGTCGTCGTTGC 60.795 57.895 15.08 0.00 38.33 4.17
2229 2387 2.665185 AAGTTCTGCCGGCGTCAC 60.665 61.111 23.90 17.44 0.00 3.67
2260 2424 0.458025 GGCCCGTAGACGACAAAGAG 60.458 60.000 3.07 0.00 43.02 2.85
2275 2439 0.321996 AAGAGTTCTTGCCGGAGTCC 59.678 55.000 5.05 0.00 34.38 3.85
2437 2616 4.223255 GGGGTTCTAAGTTCTGAAGTAGCT 59.777 45.833 0.00 0.00 0.00 3.32
2450 2629 5.637810 TCTGAAGTAGCTTGTGATAAAACCG 59.362 40.000 0.00 0.00 0.00 4.44
2454 2633 5.061179 AGTAGCTTGTGATAAAACCGTTGT 58.939 37.500 0.00 0.00 0.00 3.32
2455 2634 6.225318 AGTAGCTTGTGATAAAACCGTTGTA 58.775 36.000 0.00 0.00 0.00 2.41
2456 2635 5.352643 AGCTTGTGATAAAACCGTTGTAC 57.647 39.130 0.00 0.00 0.00 2.90
2457 2636 4.817464 AGCTTGTGATAAAACCGTTGTACA 59.183 37.500 0.00 0.00 0.00 2.90
2458 2637 5.472137 AGCTTGTGATAAAACCGTTGTACAT 59.528 36.000 0.00 0.00 0.00 2.29
2459 2638 6.651643 AGCTTGTGATAAAACCGTTGTACATA 59.348 34.615 0.00 0.00 0.00 2.29
2460 2639 7.173562 AGCTTGTGATAAAACCGTTGTACATAA 59.826 33.333 0.00 0.00 0.00 1.90
2461 2640 7.804129 GCTTGTGATAAAACCGTTGTACATAAA 59.196 33.333 0.00 0.00 0.00 1.40
2462 2641 9.834628 CTTGTGATAAAACCGTTGTACATAAAT 57.165 29.630 0.00 0.00 0.00 1.40
2472 2651 9.787435 AACCGTTGTACATAAATATATGGATGT 57.213 29.630 14.16 14.16 42.71 3.06
2473 2652 9.214957 ACCGTTGTACATAAATATATGGATGTG 57.785 33.333 17.28 6.05 42.71 3.21
2474 2653 8.664798 CCGTTGTACATAAATATATGGATGTGG 58.335 37.037 17.28 9.46 42.71 4.17
2475 2654 8.175069 CGTTGTACATAAATATATGGATGTGGC 58.825 37.037 17.28 12.38 42.71 5.01
2476 2655 9.231297 GTTGTACATAAATATATGGATGTGGCT 57.769 33.333 17.28 0.71 42.71 4.75
2477 2656 9.806448 TTGTACATAAATATATGGATGTGGCTT 57.194 29.630 17.28 0.00 42.71 4.35
2478 2657 9.230122 TGTACATAAATATATGGATGTGGCTTG 57.770 33.333 17.28 0.00 42.71 4.01
2479 2658 7.707624 ACATAAATATATGGATGTGGCTTGG 57.292 36.000 10.52 0.00 42.71 3.61
2480 2659 7.240897 ACATAAATATATGGATGTGGCTTGGT 58.759 34.615 10.52 0.00 42.71 3.67
2481 2660 7.394359 ACATAAATATATGGATGTGGCTTGGTC 59.606 37.037 10.52 0.00 42.71 4.02
2482 2661 5.589367 AATATATGGATGTGGCTTGGTCT 57.411 39.130 0.00 0.00 0.00 3.85
2483 2662 3.498774 ATATGGATGTGGCTTGGTCTC 57.501 47.619 0.00 0.00 0.00 3.36
2484 2663 0.994247 ATGGATGTGGCTTGGTCTCA 59.006 50.000 0.00 0.00 0.00 3.27
2485 2664 0.325933 TGGATGTGGCTTGGTCTCAG 59.674 55.000 0.00 0.00 0.00 3.35
2486 2665 0.326264 GGATGTGGCTTGGTCTCAGT 59.674 55.000 0.00 0.00 0.00 3.41
2487 2666 1.677217 GGATGTGGCTTGGTCTCAGTC 60.677 57.143 0.00 0.00 0.00 3.51
2488 2667 1.002430 GATGTGGCTTGGTCTCAGTCA 59.998 52.381 0.00 0.00 0.00 3.41
2489 2668 0.836606 TGTGGCTTGGTCTCAGTCAA 59.163 50.000 0.00 0.00 0.00 3.18
2490 2669 1.202687 TGTGGCTTGGTCTCAGTCAAG 60.203 52.381 6.27 6.27 42.19 3.02
2491 2670 1.131638 TGGCTTGGTCTCAGTCAAGT 58.868 50.000 10.61 0.00 41.56 3.16
2492 2671 1.202687 TGGCTTGGTCTCAGTCAAGTG 60.203 52.381 10.61 0.00 41.56 3.16
2493 2672 1.070758 GGCTTGGTCTCAGTCAAGTGA 59.929 52.381 10.61 0.00 41.56 3.41
2494 2673 2.289945 GGCTTGGTCTCAGTCAAGTGAT 60.290 50.000 10.61 0.00 41.56 3.06
2495 2674 3.055819 GGCTTGGTCTCAGTCAAGTGATA 60.056 47.826 10.61 0.00 41.56 2.15
2496 2675 4.383552 GGCTTGGTCTCAGTCAAGTGATAT 60.384 45.833 10.61 0.00 41.56 1.63
2497 2676 5.181748 GCTTGGTCTCAGTCAAGTGATATT 58.818 41.667 10.61 0.00 41.56 1.28
2498 2677 6.341316 GCTTGGTCTCAGTCAAGTGATATTA 58.659 40.000 10.61 0.00 41.56 0.98
2499 2678 6.989169 GCTTGGTCTCAGTCAAGTGATATTAT 59.011 38.462 10.61 0.00 41.56 1.28
2500 2679 8.144478 GCTTGGTCTCAGTCAAGTGATATTATA 58.856 37.037 10.61 0.00 41.56 0.98
2545 2724 7.693969 AAAAACTGAAGTATGAATCTCCCTG 57.306 36.000 0.00 0.00 0.00 4.45
2546 2725 4.414337 ACTGAAGTATGAATCTCCCTGC 57.586 45.455 0.00 0.00 0.00 4.85
2547 2726 3.776969 ACTGAAGTATGAATCTCCCTGCA 59.223 43.478 0.00 0.00 0.00 4.41
2548 2727 4.225942 ACTGAAGTATGAATCTCCCTGCAA 59.774 41.667 0.00 0.00 0.00 4.08
2549 2728 5.104193 ACTGAAGTATGAATCTCCCTGCAAT 60.104 40.000 0.00 0.00 0.00 3.56
2550 2729 6.100279 ACTGAAGTATGAATCTCCCTGCAATA 59.900 38.462 0.00 0.00 0.00 1.90
2551 2730 7.083062 TGAAGTATGAATCTCCCTGCAATAT 57.917 36.000 0.00 0.00 0.00 1.28
2552 2731 7.164122 TGAAGTATGAATCTCCCTGCAATATC 58.836 38.462 0.00 0.00 0.00 1.63
2553 2732 6.949117 AGTATGAATCTCCCTGCAATATCT 57.051 37.500 0.00 0.00 0.00 1.98
2554 2733 8.441311 AAGTATGAATCTCCCTGCAATATCTA 57.559 34.615 0.00 0.00 0.00 1.98
2555 2734 8.441311 AGTATGAATCTCCCTGCAATATCTAA 57.559 34.615 0.00 0.00 0.00 2.10
2556 2735 8.538701 AGTATGAATCTCCCTGCAATATCTAAG 58.461 37.037 0.00 0.00 0.00 2.18
2557 2736 6.119240 TGAATCTCCCTGCAATATCTAAGG 57.881 41.667 0.00 0.00 0.00 2.69
2567 2746 8.546083 CCTGCAATATCTAAGGGATATACTCT 57.454 38.462 0.00 0.00 44.30 3.24
2568 2747 8.637986 CCTGCAATATCTAAGGGATATACTCTC 58.362 40.741 0.00 0.00 44.30 3.20
2569 2748 9.420118 CTGCAATATCTAAGGGATATACTCTCT 57.580 37.037 0.00 0.00 44.30 3.10
2570 2749 9.415008 TGCAATATCTAAGGGATATACTCTCTC 57.585 37.037 0.00 0.00 44.30 3.20
2571 2750 9.640952 GCAATATCTAAGGGATATACTCTCTCT 57.359 37.037 0.00 0.00 44.30 3.10
2575 2754 7.881912 TCTAAGGGATATACTCTCTCTGTCT 57.118 40.000 0.00 0.00 31.58 3.41
2576 2755 7.913789 TCTAAGGGATATACTCTCTCTGTCTC 58.086 42.308 0.00 0.00 31.58 3.36
2577 2756 6.523035 AAGGGATATACTCTCTCTGTCTCA 57.477 41.667 0.00 0.00 31.58 3.27
2578 2757 6.523035 AGGGATATACTCTCTCTGTCTCAA 57.477 41.667 0.00 0.00 22.08 3.02
2579 2758 6.916909 AGGGATATACTCTCTCTGTCTCAAA 58.083 40.000 0.00 0.00 22.08 2.69
2580 2759 7.358263 AGGGATATACTCTCTCTGTCTCAAAA 58.642 38.462 0.00 0.00 22.08 2.44
2581 2760 8.010105 AGGGATATACTCTCTCTGTCTCAAAAT 58.990 37.037 0.00 0.00 22.08 1.82
2582 2761 9.303116 GGGATATACTCTCTCTGTCTCAAAATA 57.697 37.037 0.00 0.00 0.00 1.40
2587 2766 7.531857 ACTCTCTCTGTCTCAAAATAAGTGA 57.468 36.000 0.00 0.00 0.00 3.41
2588 2767 7.375053 ACTCTCTCTGTCTCAAAATAAGTGAC 58.625 38.462 0.00 0.00 0.00 3.67
2589 2768 7.232534 ACTCTCTCTGTCTCAAAATAAGTGACT 59.767 37.037 0.00 0.00 32.38 3.41
2590 2769 7.598278 TCTCTCTGTCTCAAAATAAGTGACTC 58.402 38.462 0.00 0.00 32.38 3.36
2591 2770 7.231519 TCTCTCTGTCTCAAAATAAGTGACTCA 59.768 37.037 0.00 0.00 32.38 3.41
2592 2771 7.726216 TCTCTGTCTCAAAATAAGTGACTCAA 58.274 34.615 0.00 0.00 32.38 3.02
2593 2772 7.653713 TCTCTGTCTCAAAATAAGTGACTCAAC 59.346 37.037 0.00 0.00 32.38 3.18
2594 2773 7.500992 TCTGTCTCAAAATAAGTGACTCAACT 58.499 34.615 0.00 0.00 32.38 3.16
2595 2774 7.987458 TCTGTCTCAAAATAAGTGACTCAACTT 59.013 33.333 0.00 0.00 42.89 2.66
2596 2775 8.506168 TGTCTCAAAATAAGTGACTCAACTTT 57.494 30.769 0.00 0.00 40.77 2.66
2597 2776 8.397906 TGTCTCAAAATAAGTGACTCAACTTTG 58.602 33.333 0.00 0.00 40.77 2.77
2598 2777 8.398665 GTCTCAAAATAAGTGACTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
2599 2778 9.607988 TCTCAAAATAAGTGACTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
2600 2779 9.651718 CTCAAAATAAGTGACTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
2601 2780 8.332464 TCAAAATAAGTGACTCAACTTTGTACG 58.668 33.333 0.00 0.00 40.77 3.67
2602 2781 8.332464 CAAAATAAGTGACTCAACTTTGTACGA 58.668 33.333 0.00 0.00 40.77 3.43
2603 2782 8.428186 AAATAAGTGACTCAACTTTGTACGAA 57.572 30.769 0.00 0.00 40.77 3.85
2604 2783 5.968387 AAGTGACTCAACTTTGTACGAAG 57.032 39.130 19.53 19.53 37.05 3.79
2644 2823 0.766131 TGAGTTAACCCGCCCAAGAA 59.234 50.000 0.88 0.00 0.00 2.52
2647 2826 0.037160 GTTAACCCGCCCAAGAAGGA 59.963 55.000 0.00 0.00 41.22 3.36
2670 2849 3.399330 CGGGTTATATTCATGGCGACTT 58.601 45.455 0.00 0.00 0.00 3.01
2712 2891 2.491693 GGAATTGAAGATGGCGGTTCAA 59.508 45.455 10.08 10.08 44.57 2.69
2729 2908 6.315393 GCGGTTCAAGAGGATAACTTATGAAA 59.685 38.462 0.00 0.00 36.48 2.69
2864 3043 1.258445 CCGGGACTCTGTAAGCCACT 61.258 60.000 0.00 0.00 0.00 4.00
2938 3117 3.055530 AGAAACAACAGATCGAGAGCCAT 60.056 43.478 0.00 0.00 0.00 4.40
2990 3170 6.574859 CGAAACCCTAGTAATACCACCTCAAA 60.575 42.308 0.00 0.00 0.00 2.69
2991 3171 6.903340 AACCCTAGTAATACCACCTCAAAT 57.097 37.500 0.00 0.00 0.00 2.32
3084 3267 8.622157 GTTTAACCCCTTTAGCTAATCTCATTC 58.378 37.037 7.08 0.00 0.00 2.67
3135 3318 1.512926 GACATCTGCCGTGACAAACT 58.487 50.000 0.00 0.00 0.00 2.66
3383 3566 1.599047 CCCTGAGCCGAACATCTGT 59.401 57.895 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.446873 TGTGTTGTGATTGCTTGTTCCTT 59.553 39.130 0.00 0.00 0.00 3.36
71 72 5.042593 TCATTGTGTTGTGATTGCTTGTTC 58.957 37.500 0.00 0.00 0.00 3.18
84 85 3.507786 TCTCGGTATCGTCATTGTGTTG 58.492 45.455 0.00 0.00 37.69 3.33
86 87 3.632604 AGATCTCGGTATCGTCATTGTGT 59.367 43.478 0.00 0.00 37.69 3.72
98 99 5.220989 CGAACCTCATTAACAGATCTCGGTA 60.221 44.000 0.00 0.00 0.00 4.02
100 101 4.045104 CGAACCTCATTAACAGATCTCGG 58.955 47.826 0.00 0.00 0.00 4.63
107 108 2.004583 TCGCCGAACCTCATTAACAG 57.995 50.000 0.00 0.00 0.00 3.16
114 115 2.257371 CGAGTTCGCCGAACCTCA 59.743 61.111 25.05 0.00 42.85 3.86
141 142 3.056458 CCCGTAGTCACTGCCACA 58.944 61.111 0.00 0.00 0.00 4.17
142 143 2.434359 GCCCGTAGTCACTGCCAC 60.434 66.667 0.00 0.00 0.00 5.01
143 144 4.063967 CGCCCGTAGTCACTGCCA 62.064 66.667 0.00 0.00 0.00 4.92
148 149 4.509737 GGGAGCGCCCGTAGTCAC 62.510 72.222 10.77 0.00 46.48 3.67
165 166 1.029947 GTGTTGCGGTATCTTGGGGG 61.030 60.000 0.00 0.00 0.00 5.40
170 171 1.743995 GCCGGTGTTGCGGTATCTT 60.744 57.895 1.90 0.00 0.00 2.40
222 236 4.753978 AACCCATGGCGGTTAGATAGCG 62.754 54.545 6.09 0.00 44.50 4.26
225 239 3.039743 TGTAACCCATGGCGGTTAGATA 58.960 45.455 6.09 0.00 46.57 1.98
231 245 0.039035 ATGTTGTAACCCATGGCGGT 59.961 50.000 6.09 0.43 37.93 5.68
249 263 2.741159 TATATGAGGAGGCACCCCAT 57.259 50.000 3.17 3.17 40.05 4.00
263 277 3.395941 AGGACCCTTTGGCCTCTTATATG 59.604 47.826 3.32 0.00 34.28 1.78
281 297 3.371063 TGTCGGAGTCGGCAGGAC 61.371 66.667 0.00 0.00 46.79 3.85
286 302 1.154073 GTGTAGTGTCGGAGTCGGC 60.154 63.158 0.00 0.00 42.06 5.54
301 321 2.226962 AGTGTGGGTAGGATACGTGT 57.773 50.000 0.00 0.00 44.28 4.49
328 348 4.557296 CGAGTTGAGGTACGTTTGGACTTA 60.557 45.833 0.00 0.00 0.00 2.24
335 355 3.988379 TGTACGAGTTGAGGTACGTTT 57.012 42.857 0.00 0.00 41.41 3.60
336 356 3.988379 TTGTACGAGTTGAGGTACGTT 57.012 42.857 0.00 0.00 41.41 3.99
337 357 3.988379 TTTGTACGAGTTGAGGTACGT 57.012 42.857 0.00 0.00 41.41 3.57
338 358 7.512579 CGAATATTTTGTACGAGTTGAGGTACG 60.513 40.741 0.00 0.00 41.41 3.67
339 359 7.485913 TCGAATATTTTGTACGAGTTGAGGTAC 59.514 37.037 0.00 0.00 39.50 3.34
340 360 7.485913 GTCGAATATTTTGTACGAGTTGAGGTA 59.514 37.037 0.00 0.00 33.82 3.08
341 361 6.309737 GTCGAATATTTTGTACGAGTTGAGGT 59.690 38.462 0.00 0.00 33.82 3.85
342 362 6.309494 TGTCGAATATTTTGTACGAGTTGAGG 59.691 38.462 0.00 0.00 33.82 3.86
343 363 7.148869 TGTGTCGAATATTTTGTACGAGTTGAG 60.149 37.037 0.00 0.00 33.82 3.02
344 364 6.641723 TGTGTCGAATATTTTGTACGAGTTGA 59.358 34.615 0.00 0.00 33.82 3.18
351 371 8.889000 GTTGAGTTTGTGTCGAATATTTTGTAC 58.111 33.333 0.00 0.00 0.00 2.90
406 426 1.589716 GATGCACAAGCCAGGGTGAC 61.590 60.000 0.00 0.00 41.13 3.67
408 428 0.968901 ATGATGCACAAGCCAGGGTG 60.969 55.000 0.00 0.00 41.13 4.61
409 429 0.251922 AATGATGCACAAGCCAGGGT 60.252 50.000 0.00 0.00 41.13 4.34
410 430 1.406539 GTAATGATGCACAAGCCAGGG 59.593 52.381 0.00 0.00 41.13 4.45
411 431 1.064505 CGTAATGATGCACAAGCCAGG 59.935 52.381 0.00 0.00 41.13 4.45
412 432 2.009051 TCGTAATGATGCACAAGCCAG 58.991 47.619 0.00 0.00 41.13 4.85
428 448 9.705290 AATAAATATATGACTGTGTGCATCGTA 57.295 29.630 0.00 0.00 0.00 3.43
429 449 8.607441 AATAAATATATGACTGTGTGCATCGT 57.393 30.769 0.00 0.00 0.00 3.73
534 555 6.707608 GGTCATCAGCTACATGAACATCATTA 59.292 38.462 15.13 0.00 37.82 1.90
564 585 7.014038 AGGCCTCTTGCATTATCTAAAAGAATG 59.986 37.037 0.00 0.00 43.89 2.67
635 656 3.047796 GCTTGCTCACACTTGACAATTG 58.952 45.455 3.24 3.24 0.00 2.32
752 777 9.997482 GACCTAATTATTAAGAATTGTCGCAAA 57.003 29.630 16.44 0.00 31.51 3.68
756 781 9.326413 ACCAGACCTAATTATTAAGAATTGTCG 57.674 33.333 16.44 11.76 31.68 4.35
759 784 8.902806 TGCACCAGACCTAATTATTAAGAATTG 58.097 33.333 16.44 5.14 31.51 2.32
760 785 9.646522 ATGCACCAGACCTAATTATTAAGAATT 57.353 29.630 12.37 12.37 33.60 2.17
764 789 7.502226 TGGAATGCACCAGACCTAATTATTAAG 59.498 37.037 0.00 0.00 34.77 1.85
766 791 6.905736 TGGAATGCACCAGACCTAATTATTA 58.094 36.000 0.00 0.00 34.77 0.98
767 792 5.765510 TGGAATGCACCAGACCTAATTATT 58.234 37.500 0.00 0.00 34.77 1.40
768 793 5.387113 TGGAATGCACCAGACCTAATTAT 57.613 39.130 0.00 0.00 34.77 1.28
780 805 2.664402 ATATGACCCTGGAATGCACC 57.336 50.000 0.00 0.00 0.00 5.01
821 848 1.845809 GCACCGAGCAAGTTGACCAG 61.846 60.000 7.16 0.00 44.79 4.00
845 872 0.953471 CGATTGAGAACCAACGGCCA 60.953 55.000 2.24 0.00 37.63 5.36
871 898 7.170998 GGCAACGGGTTATATATATAGACATGC 59.829 40.741 2.76 9.45 0.00 4.06
1079 1106 1.585006 GCGAACCTCTGGACGAAGA 59.415 57.895 0.00 0.00 0.00 2.87
1110 1137 1.375908 GTGAGGCAGCGTCATCCAA 60.376 57.895 20.29 0.00 31.03 3.53
1122 1149 1.109323 AACCACCTGCTTTGTGAGGC 61.109 55.000 2.95 0.00 35.74 4.70
1125 1152 4.739137 GCAAATTAACCACCTGCTTTGTGA 60.739 41.667 2.95 0.00 35.74 3.58
1159 1186 6.346279 GCGCGCACAAATTAGTAGTATGAATA 60.346 38.462 29.10 0.00 0.00 1.75
1160 1187 5.558273 GCGCGCACAAATTAGTAGTATGAAT 60.558 40.000 29.10 0.00 0.00 2.57
1161 1188 4.260051 GCGCGCACAAATTAGTAGTATGAA 60.260 41.667 29.10 0.00 0.00 2.57
1162 1189 3.244345 GCGCGCACAAATTAGTAGTATGA 59.756 43.478 29.10 0.00 0.00 2.15
1163 1190 3.531982 GCGCGCACAAATTAGTAGTATG 58.468 45.455 29.10 0.00 0.00 2.39
1184 1215 2.546195 TTCAAAACCGTCCACAAACG 57.454 45.000 0.00 0.00 42.24 3.60
1187 1218 4.882427 TGAGTAATTCAAAACCGTCCACAA 59.118 37.500 0.00 0.00 31.34 3.33
1206 1237 6.313905 GTGATTTCGGTAATGACAGATTGAGT 59.686 38.462 0.00 0.00 31.50 3.41
1208 1239 6.313658 CAGTGATTTCGGTAATGACAGATTGA 59.686 38.462 0.54 0.00 33.35 2.57
1209 1240 6.313658 TCAGTGATTTCGGTAATGACAGATTG 59.686 38.462 0.00 0.00 33.35 2.67
1210 1241 6.406370 TCAGTGATTTCGGTAATGACAGATT 58.594 36.000 0.00 0.00 33.35 2.40
1211 1242 5.977635 TCAGTGATTTCGGTAATGACAGAT 58.022 37.500 0.00 0.00 33.35 2.90
1214 1256 7.174080 TGAATTTCAGTGATTTCGGTAATGACA 59.826 33.333 0.00 0.00 33.35 3.58
1216 1258 7.680442 TGAATTTCAGTGATTTCGGTAATGA 57.320 32.000 0.00 0.00 0.00 2.57
1240 1293 7.723172 TGGGCTGAAATGAAAACCAAAATAATT 59.277 29.630 0.00 0.00 0.00 1.40
1241 1294 7.230027 TGGGCTGAAATGAAAACCAAAATAAT 58.770 30.769 0.00 0.00 0.00 1.28
1248 1301 2.368221 CCTTGGGCTGAAATGAAAACCA 59.632 45.455 0.00 0.00 0.00 3.67
1292 1345 2.401351 GACGCCGGGACATACTTAATC 58.599 52.381 2.18 0.00 0.00 1.75
1299 1352 2.182284 CAACGACGCCGGGACATA 59.818 61.111 2.18 0.00 40.78 2.29
1306 1359 0.724453 CAAACATTCCAACGACGCCG 60.724 55.000 0.00 0.00 42.50 6.46
1308 1361 0.040425 AGCAAACATTCCAACGACGC 60.040 50.000 0.00 0.00 0.00 5.19
1310 1363 2.290641 AGTGAGCAAACATTCCAACGAC 59.709 45.455 0.00 0.00 0.00 4.34
1313 1366 2.863704 GCCAGTGAGCAAACATTCCAAC 60.864 50.000 0.00 0.00 0.00 3.77
1315 1368 0.961019 GCCAGTGAGCAAACATTCCA 59.039 50.000 0.00 0.00 0.00 3.53
1316 1369 1.251251 AGCCAGTGAGCAAACATTCC 58.749 50.000 6.40 0.00 34.23 3.01
1333 1386 2.549633 AACACGCATGCAAATCTAGC 57.450 45.000 19.57 0.00 0.00 3.42
1364 1417 8.980481 ATCTTAATCGACTGGGATTTAACAAT 57.020 30.769 0.00 0.00 37.74 2.71
1365 1418 8.801882 AATCTTAATCGACTGGGATTTAACAA 57.198 30.769 0.00 0.00 37.74 2.83
1369 1422 9.333724 GGTTAAATCTTAATCGACTGGGATTTA 57.666 33.333 15.27 15.27 37.74 1.40
1371 1424 7.343357 TGGTTAAATCTTAATCGACTGGGATT 58.657 34.615 0.00 0.00 39.78 3.01
1372 1425 6.895782 TGGTTAAATCTTAATCGACTGGGAT 58.104 36.000 0.00 0.00 0.00 3.85
1373 1426 6.302535 TGGTTAAATCTTAATCGACTGGGA 57.697 37.500 0.00 0.00 0.00 4.37
1374 1427 6.598064 ACTTGGTTAAATCTTAATCGACTGGG 59.402 38.462 0.00 0.00 0.00 4.45
1375 1428 7.549488 AGACTTGGTTAAATCTTAATCGACTGG 59.451 37.037 0.00 0.00 0.00 4.00
1376 1429 8.480643 AGACTTGGTTAAATCTTAATCGACTG 57.519 34.615 0.00 0.00 0.00 3.51
1377 1430 8.311836 TGAGACTTGGTTAAATCTTAATCGACT 58.688 33.333 0.00 0.00 0.00 4.18
1379 1432 8.311836 ACTGAGACTTGGTTAAATCTTAATCGA 58.688 33.333 0.00 0.00 0.00 3.59
1380 1433 8.480643 ACTGAGACTTGGTTAAATCTTAATCG 57.519 34.615 0.00 0.00 0.00 3.34
1381 1434 8.596380 CGACTGAGACTTGGTTAAATCTTAATC 58.404 37.037 0.00 0.00 0.00 1.75
1382 1435 8.311836 TCGACTGAGACTTGGTTAAATCTTAAT 58.688 33.333 0.00 0.00 0.00 1.40
1384 1437 7.223260 TCGACTGAGACTTGGTTAAATCTTA 57.777 36.000 0.00 0.00 0.00 2.10
1385 1438 6.097915 TCGACTGAGACTTGGTTAAATCTT 57.902 37.500 0.00 0.00 0.00 2.40
1386 1439 5.723672 TCGACTGAGACTTGGTTAAATCT 57.276 39.130 0.00 0.00 0.00 2.40
1387 1440 5.869888 ACATCGACTGAGACTTGGTTAAATC 59.130 40.000 0.00 0.00 0.00 2.17
1388 1441 5.794894 ACATCGACTGAGACTTGGTTAAAT 58.205 37.500 0.00 0.00 0.00 1.40
1389 1442 5.209818 ACATCGACTGAGACTTGGTTAAA 57.790 39.130 0.00 0.00 0.00 1.52
1390 1443 4.866508 ACATCGACTGAGACTTGGTTAA 57.133 40.909 0.00 0.00 0.00 2.01
1391 1444 4.038763 ACAACATCGACTGAGACTTGGTTA 59.961 41.667 0.00 0.00 0.00 2.85
1392 1445 3.181465 ACAACATCGACTGAGACTTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
1393 1446 2.365617 ACAACATCGACTGAGACTTGGT 59.634 45.455 0.00 0.00 0.00 3.67
1394 1447 3.032017 ACAACATCGACTGAGACTTGG 57.968 47.619 0.00 0.00 0.00 3.61
1395 1448 6.146184 ACAAATACAACATCGACTGAGACTTG 59.854 38.462 0.00 0.00 0.00 3.16
1396 1449 6.223852 ACAAATACAACATCGACTGAGACTT 58.776 36.000 0.00 0.00 0.00 3.01
1397 1450 5.784177 ACAAATACAACATCGACTGAGACT 58.216 37.500 0.00 0.00 0.00 3.24
1398 1451 7.541091 TCTTACAAATACAACATCGACTGAGAC 59.459 37.037 0.00 0.00 0.00 3.36
1399 1452 7.599171 TCTTACAAATACAACATCGACTGAGA 58.401 34.615 0.00 0.00 0.00 3.27
1400 1453 7.812309 TCTTACAAATACAACATCGACTGAG 57.188 36.000 0.00 0.00 0.00 3.35
1401 1454 7.491372 GGATCTTACAAATACAACATCGACTGA 59.509 37.037 0.00 0.00 0.00 3.41
1402 1455 7.277760 TGGATCTTACAAATACAACATCGACTG 59.722 37.037 0.00 0.00 0.00 3.51
1403 1456 7.327975 TGGATCTTACAAATACAACATCGACT 58.672 34.615 0.00 0.00 0.00 4.18
1404 1457 7.534085 TGGATCTTACAAATACAACATCGAC 57.466 36.000 0.00 0.00 0.00 4.20
1405 1458 8.611757 CATTGGATCTTACAAATACAACATCGA 58.388 33.333 0.00 0.00 29.91 3.59
1406 1459 8.397906 ACATTGGATCTTACAAATACAACATCG 58.602 33.333 0.00 0.00 29.91 3.84
1407 1460 9.507280 CACATTGGATCTTACAAATACAACATC 57.493 33.333 0.00 0.00 29.91 3.06
1408 1461 8.469200 CCACATTGGATCTTACAAATACAACAT 58.531 33.333 0.00 0.00 40.96 2.71
1409 1462 7.667635 TCCACATTGGATCTTACAAATACAACA 59.332 33.333 0.00 0.00 42.67 3.33
1410 1463 8.050778 TCCACATTGGATCTTACAAATACAAC 57.949 34.615 0.00 0.00 42.67 3.32
1425 1478 0.107703 GCACGGATCTCCACATTGGA 60.108 55.000 0.00 0.00 45.98 3.53
1426 1479 0.392863 TGCACGGATCTCCACATTGG 60.393 55.000 0.00 0.00 39.43 3.16
1427 1480 1.452110 TTGCACGGATCTCCACATTG 58.548 50.000 0.00 0.00 35.14 2.82
1428 1481 2.425143 ATTGCACGGATCTCCACATT 57.575 45.000 0.00 0.00 35.14 2.71
1429 1482 2.425143 AATTGCACGGATCTCCACAT 57.575 45.000 0.00 0.00 35.14 3.21
1430 1483 2.198827 AAATTGCACGGATCTCCACA 57.801 45.000 0.00 0.00 35.14 4.17
1431 1484 3.575965 AAAAATTGCACGGATCTCCAC 57.424 42.857 0.00 0.00 35.14 4.02
1488 1541 7.177568 AGCTAGATCTTAGTTGACTGAGTTTCA 59.822 37.037 0.00 0.00 32.14 2.69
1489 1542 7.487829 CAGCTAGATCTTAGTTGACTGAGTTTC 59.512 40.741 0.00 2.95 32.14 2.78
1490 1543 7.177568 TCAGCTAGATCTTAGTTGACTGAGTTT 59.822 37.037 0.00 0.00 31.41 2.66
1491 1544 6.661377 TCAGCTAGATCTTAGTTGACTGAGTT 59.339 38.462 0.00 0.00 31.41 3.01
1492 1545 6.094881 GTCAGCTAGATCTTAGTTGACTGAGT 59.905 42.308 24.82 0.00 45.85 3.41
1493 1546 6.494842 GTCAGCTAGATCTTAGTTGACTGAG 58.505 44.000 24.82 8.74 45.85 3.35
1494 1547 6.443934 GTCAGCTAGATCTTAGTTGACTGA 57.556 41.667 24.82 15.57 45.85 3.41
1498 1551 7.939784 TGTTAGTCAGCTAGATCTTAGTTGA 57.060 36.000 0.00 7.50 33.43 3.18
1499 1552 9.891828 CTATGTTAGTCAGCTAGATCTTAGTTG 57.108 37.037 0.00 5.25 0.00 3.16
1500 1553 9.073475 CCTATGTTAGTCAGCTAGATCTTAGTT 57.927 37.037 0.00 0.00 0.00 2.24
1501 1554 8.441572 TCCTATGTTAGTCAGCTAGATCTTAGT 58.558 37.037 0.00 0.00 0.00 2.24
1502 1555 8.726988 GTCCTATGTTAGTCAGCTAGATCTTAG 58.273 40.741 0.00 0.00 0.00 2.18
1503 1556 8.441572 AGTCCTATGTTAGTCAGCTAGATCTTA 58.558 37.037 0.00 0.00 0.00 2.10
1504 1557 7.294584 AGTCCTATGTTAGTCAGCTAGATCTT 58.705 38.462 0.00 0.00 0.00 2.40
1505 1558 6.848069 AGTCCTATGTTAGTCAGCTAGATCT 58.152 40.000 0.00 0.00 0.00 2.75
1506 1559 6.712998 TGAGTCCTATGTTAGTCAGCTAGATC 59.287 42.308 0.00 0.00 0.00 2.75
1507 1560 6.606069 TGAGTCCTATGTTAGTCAGCTAGAT 58.394 40.000 0.00 0.00 0.00 1.98
1508 1561 6.002653 TGAGTCCTATGTTAGTCAGCTAGA 57.997 41.667 0.00 0.00 0.00 2.43
1509 1562 6.017440 GTCTGAGTCCTATGTTAGTCAGCTAG 60.017 46.154 0.00 0.00 41.15 3.42
1510 1563 5.823570 GTCTGAGTCCTATGTTAGTCAGCTA 59.176 44.000 0.00 0.00 41.15 3.32
1511 1564 4.642885 GTCTGAGTCCTATGTTAGTCAGCT 59.357 45.833 0.00 0.00 41.15 4.24
1512 1565 4.202070 GGTCTGAGTCCTATGTTAGTCAGC 60.202 50.000 0.00 0.00 41.15 4.26
1513 1566 5.197451 AGGTCTGAGTCCTATGTTAGTCAG 58.803 45.833 0.00 0.00 42.22 3.51
1514 1567 5.194473 AGGTCTGAGTCCTATGTTAGTCA 57.806 43.478 0.00 0.00 33.04 3.41
1522 1575 8.958060 TTTTATAGCATAGGTCTGAGTCCTAT 57.042 34.615 11.70 11.70 45.72 2.57
1523 1576 8.005388 ACTTTTATAGCATAGGTCTGAGTCCTA 58.995 37.037 7.89 7.89 41.08 2.94
1524 1577 6.841755 ACTTTTATAGCATAGGTCTGAGTCCT 59.158 38.462 3.32 3.32 38.91 3.85
1525 1578 7.056844 ACTTTTATAGCATAGGTCTGAGTCC 57.943 40.000 0.00 0.00 0.00 3.85
1526 1579 8.198109 TGAACTTTTATAGCATAGGTCTGAGTC 58.802 37.037 0.00 0.00 0.00 3.36
1527 1580 7.982354 GTGAACTTTTATAGCATAGGTCTGAGT 59.018 37.037 0.00 0.00 0.00 3.41
1528 1581 7.981789 TGTGAACTTTTATAGCATAGGTCTGAG 59.018 37.037 0.00 0.00 0.00 3.35
1529 1582 7.847096 TGTGAACTTTTATAGCATAGGTCTGA 58.153 34.615 0.00 0.00 0.00 3.27
1530 1583 7.981789 TCTGTGAACTTTTATAGCATAGGTCTG 59.018 37.037 0.00 0.00 0.00 3.51
1531 1584 8.079211 TCTGTGAACTTTTATAGCATAGGTCT 57.921 34.615 0.00 0.00 0.00 3.85
1532 1585 8.718102 TTCTGTGAACTTTTATAGCATAGGTC 57.282 34.615 0.00 0.00 0.00 3.85
1533 1586 8.322091 ACTTCTGTGAACTTTTATAGCATAGGT 58.678 33.333 0.00 0.00 0.00 3.08
1534 1587 8.723942 ACTTCTGTGAACTTTTATAGCATAGG 57.276 34.615 0.00 0.00 0.00 2.57
1537 1590 9.502091 TTGTACTTCTGTGAACTTTTATAGCAT 57.498 29.630 0.00 0.00 0.00 3.79
1538 1591 8.896320 TTGTACTTCTGTGAACTTTTATAGCA 57.104 30.769 0.00 0.00 0.00 3.49
1565 1618 8.057536 TGTAATTTTTACTGTGTTTGAGGTGT 57.942 30.769 0.00 0.00 0.00 4.16
1581 1634 9.981114 AAAGAAGAACATTCCGATGTAATTTTT 57.019 25.926 0.00 0.00 45.58 1.94
1593 1652 7.448777 ACTTAGAAAGGGAAAGAAGAACATTCC 59.551 37.037 0.00 0.00 43.24 3.01
1594 1653 8.397575 ACTTAGAAAGGGAAAGAAGAACATTC 57.602 34.615 0.00 0.00 0.00 2.67
1595 1654 9.862149 TTACTTAGAAAGGGAAAGAAGAACATT 57.138 29.630 0.00 0.00 0.00 2.71
1620 1679 9.970395 CAGGCATACACATACAATTTGATTATT 57.030 29.630 2.79 0.00 0.00 1.40
1621 1680 8.084073 GCAGGCATACACATACAATTTGATTAT 58.916 33.333 2.79 0.00 0.00 1.28
1634 1693 5.318630 TGATATTCATGCAGGCATACACAT 58.681 37.500 6.42 0.00 34.91 3.21
1651 1717 2.851195 CAGCGGTTAAGCCCTGATATT 58.149 47.619 12.91 0.00 37.58 1.28
1804 1871 1.884579 ACAAAGAGGTTCATGCAGCTG 59.115 47.619 10.11 10.11 0.00 4.24
1826 1902 3.849911 CTGCCAGACTAATGTTTCGAGA 58.150 45.455 0.00 0.00 0.00 4.04
2018 2152 0.471971 GGGAGGGAGGATTCATCGGA 60.472 60.000 0.00 0.00 0.00 4.55
2140 2286 4.954970 CCGTTGGTGGGCTGCTGT 62.955 66.667 0.00 0.00 0.00 4.40
2238 2396 2.438951 TTTGTCGTCTACGGGCCACC 62.439 60.000 4.39 0.00 40.29 4.61
2260 2424 4.285851 CTGGACTCCGGCAAGAAC 57.714 61.111 0.00 0.00 0.00 3.01
2275 2439 4.790962 ACCATGCTGCTCCCGCTG 62.791 66.667 0.00 0.00 38.05 5.18
2450 2629 9.231297 AGCCACATCCATATATTTATGTACAAC 57.769 33.333 0.00 2.04 34.54 3.32
2454 2633 8.390143 ACCAAGCCACATCCATATATTTATGTA 58.610 33.333 8.64 0.00 34.54 2.29
2455 2634 7.240897 ACCAAGCCACATCCATATATTTATGT 58.759 34.615 4.52 4.52 34.54 2.29
2456 2635 7.613022 AGACCAAGCCACATCCATATATTTATG 59.387 37.037 0.00 0.00 35.87 1.90
2457 2636 7.702785 AGACCAAGCCACATCCATATATTTAT 58.297 34.615 0.00 0.00 0.00 1.40
2458 2637 7.090319 AGACCAAGCCACATCCATATATTTA 57.910 36.000 0.00 0.00 0.00 1.40
2459 2638 5.957132 AGACCAAGCCACATCCATATATTT 58.043 37.500 0.00 0.00 0.00 1.40
2460 2639 5.073554 TGAGACCAAGCCACATCCATATATT 59.926 40.000 0.00 0.00 0.00 1.28
2461 2640 4.598807 TGAGACCAAGCCACATCCATATAT 59.401 41.667 0.00 0.00 0.00 0.86
2462 2641 3.973305 TGAGACCAAGCCACATCCATATA 59.027 43.478 0.00 0.00 0.00 0.86
2463 2642 2.779430 TGAGACCAAGCCACATCCATAT 59.221 45.455 0.00 0.00 0.00 1.78
2464 2643 2.171237 CTGAGACCAAGCCACATCCATA 59.829 50.000 0.00 0.00 0.00 2.74
2465 2644 0.994247 TGAGACCAAGCCACATCCAT 59.006 50.000 0.00 0.00 0.00 3.41
2466 2645 0.325933 CTGAGACCAAGCCACATCCA 59.674 55.000 0.00 0.00 0.00 3.41
2467 2646 0.326264 ACTGAGACCAAGCCACATCC 59.674 55.000 0.00 0.00 0.00 3.51
2468 2647 1.002430 TGACTGAGACCAAGCCACATC 59.998 52.381 0.00 0.00 0.00 3.06
2469 2648 1.059098 TGACTGAGACCAAGCCACAT 58.941 50.000 0.00 0.00 0.00 3.21
2470 2649 0.836606 TTGACTGAGACCAAGCCACA 59.163 50.000 0.00 0.00 0.00 4.17
2471 2650 1.202698 ACTTGACTGAGACCAAGCCAC 60.203 52.381 15.26 0.00 42.46 5.01
2472 2651 1.131638 ACTTGACTGAGACCAAGCCA 58.868 50.000 15.26 0.00 42.46 4.75
2473 2652 1.070758 TCACTTGACTGAGACCAAGCC 59.929 52.381 15.26 0.00 42.46 4.35
2474 2653 2.533266 TCACTTGACTGAGACCAAGC 57.467 50.000 15.26 0.00 42.46 4.01
2521 2700 6.151817 GCAGGGAGATTCATACTTCAGTTTTT 59.848 38.462 0.00 0.00 0.00 1.94
2522 2701 5.649831 GCAGGGAGATTCATACTTCAGTTTT 59.350 40.000 0.00 0.00 0.00 2.43
2523 2702 5.189180 GCAGGGAGATTCATACTTCAGTTT 58.811 41.667 0.00 0.00 0.00 2.66
2524 2703 4.225942 TGCAGGGAGATTCATACTTCAGTT 59.774 41.667 0.00 0.00 0.00 3.16
2525 2704 3.776969 TGCAGGGAGATTCATACTTCAGT 59.223 43.478 0.00 0.00 0.00 3.41
2526 2705 4.412796 TGCAGGGAGATTCATACTTCAG 57.587 45.455 0.00 0.00 0.00 3.02
2527 2706 4.842531 TTGCAGGGAGATTCATACTTCA 57.157 40.909 0.00 0.00 0.00 3.02
2528 2707 7.393216 AGATATTGCAGGGAGATTCATACTTC 58.607 38.462 0.00 0.00 0.00 3.01
2529 2708 7.327064 AGATATTGCAGGGAGATTCATACTT 57.673 36.000 0.00 0.00 0.00 2.24
2530 2709 6.949117 AGATATTGCAGGGAGATTCATACT 57.051 37.500 0.00 0.00 0.00 2.12
2531 2710 7.768120 CCTTAGATATTGCAGGGAGATTCATAC 59.232 40.741 0.00 0.00 0.00 2.39
2532 2711 7.855375 CCTTAGATATTGCAGGGAGATTCATA 58.145 38.462 0.00 0.00 0.00 2.15
2533 2712 6.719301 CCTTAGATATTGCAGGGAGATTCAT 58.281 40.000 0.00 0.00 0.00 2.57
2534 2713 6.119240 CCTTAGATATTGCAGGGAGATTCA 57.881 41.667 0.00 0.00 0.00 2.57
2541 2720 7.566879 AGAGTATATCCCTTAGATATTGCAGGG 59.433 40.741 7.46 7.46 44.34 4.45
2542 2721 8.546083 AGAGTATATCCCTTAGATATTGCAGG 57.454 38.462 0.84 0.00 44.34 4.85
2543 2722 9.420118 AGAGAGTATATCCCTTAGATATTGCAG 57.580 37.037 0.84 0.00 44.34 4.41
2544 2723 9.415008 GAGAGAGTATATCCCTTAGATATTGCA 57.585 37.037 0.84 0.00 44.34 4.08
2545 2724 9.640952 AGAGAGAGTATATCCCTTAGATATTGC 57.359 37.037 0.84 0.00 44.34 3.56
2549 2728 9.569074 AGACAGAGAGAGTATATCCCTTAGATA 57.431 37.037 0.00 0.00 41.73 1.98
2550 2729 8.463055 AGACAGAGAGAGTATATCCCTTAGAT 57.537 38.462 0.00 0.00 39.15 1.98
2551 2730 7.514473 TGAGACAGAGAGAGTATATCCCTTAGA 59.486 40.741 0.00 0.00 0.00 2.10
2552 2731 7.685481 TGAGACAGAGAGAGTATATCCCTTAG 58.315 42.308 0.00 0.00 0.00 2.18
2553 2732 7.634526 TGAGACAGAGAGAGTATATCCCTTA 57.365 40.000 0.00 0.00 0.00 2.69
2554 2733 6.523035 TGAGACAGAGAGAGTATATCCCTT 57.477 41.667 0.00 0.00 0.00 3.95
2555 2734 6.523035 TTGAGACAGAGAGAGTATATCCCT 57.477 41.667 0.00 0.00 0.00 4.20
2556 2735 7.589958 TTTTGAGACAGAGAGAGTATATCCC 57.410 40.000 0.00 0.00 0.00 3.85
2561 2740 9.249053 TCACTTATTTTGAGACAGAGAGAGTAT 57.751 33.333 0.00 0.00 0.00 2.12
2562 2741 8.516234 GTCACTTATTTTGAGACAGAGAGAGTA 58.484 37.037 0.00 0.00 0.00 2.59
2563 2742 7.232534 AGTCACTTATTTTGAGACAGAGAGAGT 59.767 37.037 0.00 0.00 0.00 3.24
2564 2743 7.601856 AGTCACTTATTTTGAGACAGAGAGAG 58.398 38.462 0.00 0.00 0.00 3.20
2565 2744 7.231519 TGAGTCACTTATTTTGAGACAGAGAGA 59.768 37.037 0.00 0.00 0.00 3.10
2566 2745 7.374272 TGAGTCACTTATTTTGAGACAGAGAG 58.626 38.462 0.00 0.00 0.00 3.20
2567 2746 7.290110 TGAGTCACTTATTTTGAGACAGAGA 57.710 36.000 0.00 0.00 0.00 3.10
2568 2747 7.655328 AGTTGAGTCACTTATTTTGAGACAGAG 59.345 37.037 0.00 0.00 0.00 3.35
2569 2748 7.500992 AGTTGAGTCACTTATTTTGAGACAGA 58.499 34.615 0.00 0.00 0.00 3.41
2570 2749 7.721286 AGTTGAGTCACTTATTTTGAGACAG 57.279 36.000 0.00 0.00 0.00 3.51
2571 2750 8.397906 CAAAGTTGAGTCACTTATTTTGAGACA 58.602 33.333 5.72 0.00 35.87 3.41
2572 2751 8.398665 ACAAAGTTGAGTCACTTATTTTGAGAC 58.601 33.333 14.62 0.00 35.87 3.36
2573 2752 8.506168 ACAAAGTTGAGTCACTTATTTTGAGA 57.494 30.769 14.62 0.00 35.87 3.27
2574 2753 9.651718 GTACAAAGTTGAGTCACTTATTTTGAG 57.348 33.333 14.62 0.00 35.87 3.02
2575 2754 8.332464 CGTACAAAGTTGAGTCACTTATTTTGA 58.668 33.333 14.62 1.37 35.87 2.69
2576 2755 8.332464 TCGTACAAAGTTGAGTCACTTATTTTG 58.668 33.333 8.80 8.80 35.87 2.44
2577 2756 8.428186 TCGTACAAAGTTGAGTCACTTATTTT 57.572 30.769 0.00 0.00 35.87 1.82
2578 2757 8.428186 TTCGTACAAAGTTGAGTCACTTATTT 57.572 30.769 0.00 0.00 35.87 1.40
2579 2758 7.170998 CCTTCGTACAAAGTTGAGTCACTTATT 59.829 37.037 0.00 0.00 35.87 1.40
2580 2759 6.645415 CCTTCGTACAAAGTTGAGTCACTTAT 59.355 38.462 0.00 0.00 35.87 1.73
2581 2760 5.981315 CCTTCGTACAAAGTTGAGTCACTTA 59.019 40.000 0.00 0.00 35.87 2.24
2582 2761 4.809426 CCTTCGTACAAAGTTGAGTCACTT 59.191 41.667 0.00 0.00 38.74 3.16
2583 2762 4.369182 CCTTCGTACAAAGTTGAGTCACT 58.631 43.478 0.00 0.00 0.00 3.41
2584 2763 3.493503 CCCTTCGTACAAAGTTGAGTCAC 59.506 47.826 0.00 0.00 0.00 3.67
2585 2764 3.133362 ACCCTTCGTACAAAGTTGAGTCA 59.867 43.478 0.00 0.00 0.00 3.41
2586 2765 3.493503 CACCCTTCGTACAAAGTTGAGTC 59.506 47.826 0.00 0.00 0.00 3.36
2587 2766 3.118519 ACACCCTTCGTACAAAGTTGAGT 60.119 43.478 0.00 0.00 0.00 3.41
2588 2767 3.463944 ACACCCTTCGTACAAAGTTGAG 58.536 45.455 0.00 0.00 0.00 3.02
2589 2768 3.547054 ACACCCTTCGTACAAAGTTGA 57.453 42.857 0.00 0.00 0.00 3.18
2590 2769 3.242936 CCAACACCCTTCGTACAAAGTTG 60.243 47.826 0.00 0.00 35.97 3.16
2591 2770 2.946990 CCAACACCCTTCGTACAAAGTT 59.053 45.455 0.00 0.00 0.00 2.66
2592 2771 2.567985 CCAACACCCTTCGTACAAAGT 58.432 47.619 0.00 0.00 0.00 2.66
2593 2772 1.877443 CCCAACACCCTTCGTACAAAG 59.123 52.381 0.00 0.00 0.00 2.77
2594 2773 1.477195 CCCCAACACCCTTCGTACAAA 60.477 52.381 0.00 0.00 0.00 2.83
2595 2774 0.108963 CCCCAACACCCTTCGTACAA 59.891 55.000 0.00 0.00 0.00 2.41
2596 2775 0.763604 TCCCCAACACCCTTCGTACA 60.764 55.000 0.00 0.00 0.00 2.90
2597 2776 0.616891 ATCCCCAACACCCTTCGTAC 59.383 55.000 0.00 0.00 0.00 3.67
2598 2777 2.250921 TATCCCCAACACCCTTCGTA 57.749 50.000 0.00 0.00 0.00 3.43
2599 2778 1.591768 ATATCCCCAACACCCTTCGT 58.408 50.000 0.00 0.00 0.00 3.85
2600 2779 2.704065 ACTATATCCCCAACACCCTTCG 59.296 50.000 0.00 0.00 0.00 3.79
2601 2780 4.790718 AACTATATCCCCAACACCCTTC 57.209 45.455 0.00 0.00 0.00 3.46
2602 2781 6.391649 TCAATAACTATATCCCCAACACCCTT 59.608 38.462 0.00 0.00 0.00 3.95
2603 2782 5.914716 TCAATAACTATATCCCCAACACCCT 59.085 40.000 0.00 0.00 0.00 4.34
2604 2783 6.183361 ACTCAATAACTATATCCCCAACACCC 60.183 42.308 0.00 0.00 0.00 4.61
2644 2823 2.039879 GCCATGAATATAACCCGGTCCT 59.960 50.000 0.00 0.00 0.00 3.85
2647 2826 1.695242 TCGCCATGAATATAACCCGGT 59.305 47.619 0.00 0.00 0.00 5.28
2670 2849 6.134535 TCCTTCTTGGGCTTTGTCTTTATA 57.865 37.500 0.00 0.00 36.20 0.98
2712 2891 4.726825 TGGGCCTTTCATAAGTTATCCTCT 59.273 41.667 4.53 0.00 0.00 3.69
2815 2994 1.469335 AACGTGTCCGACCTGGTGAT 61.469 55.000 2.82 0.00 39.52 3.06
2864 3043 1.855295 TATACTCAGGTTGACGCCCA 58.145 50.000 0.00 0.00 0.00 5.36
2990 3170 5.201243 GTGAAGGTAAAGGCCTAATCCAAT 58.799 41.667 5.16 1.92 38.03 3.16
2991 3171 4.569015 GGTGAAGGTAAAGGCCTAATCCAA 60.569 45.833 5.16 0.00 38.03 3.53
3084 3267 0.249073 CTTAGTCGTGGAGCCATCGG 60.249 60.000 10.16 0.00 0.00 4.18
3135 3318 2.185867 GGGCGCCAACTATCGTGA 59.814 61.111 30.85 0.00 0.00 4.35
3321 3504 0.108329 AAGACGTGAATTCCGCCGAT 60.108 50.000 13.91 2.59 0.00 4.18
3375 3558 3.706698 CGATGATGTCGGTACAGATGTT 58.293 45.455 0.00 0.00 46.47 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.