Multiple sequence alignment - TraesCS4D01G360200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G360200 chr4D 100.000 3929 0 0 1 3929 507270811 507274739 0.000000e+00 7256.0
1 TraesCS4D01G360200 chr4D 94.970 338 16 1 1139 1475 475746401 475746738 2.690000e-146 529.0
2 TraesCS4D01G360200 chr4D 94.872 39 2 0 3229 3267 298241432 298241394 1.180000e-05 62.1
3 TraesCS4D01G360200 chr5A 92.535 3456 143 42 525 3929 691836483 691833092 0.000000e+00 4846.0
4 TraesCS4D01G360200 chr4B 92.680 2869 100 43 420 3225 654276306 654273485 0.000000e+00 4034.0
5 TraesCS4D01G360200 chr4B 89.808 520 39 9 3416 3929 654273477 654272966 0.000000e+00 654.0
6 TraesCS4D01G360200 chr1D 97.577 619 8 2 864 1475 27850245 27849627 0.000000e+00 1053.0
7 TraesCS4D01G360200 chr1D 80.709 1156 189 27 1785 2929 298446104 298444972 0.000000e+00 869.0
8 TraesCS4D01G360200 chr1D 96.450 338 11 1 1139 1475 453605990 453605653 1.230000e-154 556.0
9 TraesCS4D01G360200 chr3D 97.227 613 9 3 864 1475 231894507 231895112 0.000000e+00 1031.0
10 TraesCS4D01G360200 chr5D 95.731 609 9 1 867 1475 525305294 525304703 0.000000e+00 965.0
11 TraesCS4D01G360200 chr5D 97.297 37 1 0 3236 3272 479456023 479456059 3.280000e-06 63.9
12 TraesCS4D01G360200 chr1A 81.558 1155 181 25 1785 2929 372069076 372067944 0.000000e+00 924.0
13 TraesCS4D01G360200 chr1B 81.228 1156 183 27 1785 2929 401454252 401453120 0.000000e+00 902.0
14 TraesCS4D01G360200 chr3B 90.875 263 17 5 1163 1423 815307909 815307652 2.910000e-91 346.0
15 TraesCS4D01G360200 chr3B 88.614 202 19 4 2149 2348 672702696 672702497 3.920000e-60 243.0
16 TraesCS4D01G360200 chr3B 88.119 202 20 4 2149 2348 705305485 705305286 1.820000e-58 237.0
17 TraesCS4D01G360200 chr2D 84.502 271 21 8 2124 2385 646605456 646605198 8.430000e-62 248.0
18 TraesCS4D01G360200 chr2D 97.222 36 1 0 3236 3271 218045376 218045411 1.180000e-05 62.1
19 TraesCS4D01G360200 chr6B 87.805 205 21 4 2146 2348 624024221 624024423 1.820000e-58 237.0
20 TraesCS4D01G360200 chr6B 92.857 42 3 0 3229 3270 436805435 436805394 1.180000e-05 62.1
21 TraesCS4D01G360200 chr7D 97.727 132 3 0 1344 1475 634159049 634159180 1.100000e-55 228.0
22 TraesCS4D01G360200 chr2A 77.551 343 40 23 1376 1702 62320447 62320768 5.220000e-39 172.0
23 TraesCS4D01G360200 chr7B 81.319 182 21 7 1559 1732 449878523 449878347 6.850000e-28 135.0
24 TraesCS4D01G360200 chr3A 97.500 40 1 0 3227 3266 178256875 178256914 7.040000e-08 69.4
25 TraesCS4D01G360200 chr6A 97.436 39 1 0 3229 3267 393544555 393544593 2.530000e-07 67.6
26 TraesCS4D01G360200 chr6A 90.385 52 2 3 3223 3273 33260118 33260167 9.110000e-07 65.8
27 TraesCS4D01G360200 chr5B 94.872 39 2 0 3229 3267 587124043 587124005 1.180000e-05 62.1
28 TraesCS4D01G360200 chr5B 94.872 39 1 1 3236 3274 554791721 554791684 4.240000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G360200 chr4D 507270811 507274739 3928 False 7256 7256 100.000 1 3929 1 chr4D.!!$F2 3928
1 TraesCS4D01G360200 chr5A 691833092 691836483 3391 True 4846 4846 92.535 525 3929 1 chr5A.!!$R1 3404
2 TraesCS4D01G360200 chr4B 654272966 654276306 3340 True 2344 4034 91.244 420 3929 2 chr4B.!!$R1 3509
3 TraesCS4D01G360200 chr1D 27849627 27850245 618 True 1053 1053 97.577 864 1475 1 chr1D.!!$R1 611
4 TraesCS4D01G360200 chr1D 298444972 298446104 1132 True 869 869 80.709 1785 2929 1 chr1D.!!$R2 1144
5 TraesCS4D01G360200 chr3D 231894507 231895112 605 False 1031 1031 97.227 864 1475 1 chr3D.!!$F1 611
6 TraesCS4D01G360200 chr5D 525304703 525305294 591 True 965 965 95.731 867 1475 1 chr5D.!!$R1 608
7 TraesCS4D01G360200 chr1A 372067944 372069076 1132 True 924 924 81.558 1785 2929 1 chr1A.!!$R1 1144
8 TraesCS4D01G360200 chr1B 401453120 401454252 1132 True 902 902 81.228 1785 2929 1 chr1B.!!$R1 1144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.031857 TTGATTGCAGTTTGGCCGTG 59.968 50.0 0.0 0.0 0.0 4.94 F
263 264 0.031994 GATTGCAGTTTGGCCGTGTT 59.968 50.0 0.0 0.0 0.0 3.32 F
302 303 0.107993 CTCACATCCGCTGACCACAT 60.108 55.0 0.0 0.0 0.0 3.21 F
303 304 0.108186 TCACATCCGCTGACCACATC 60.108 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2089 3.357079 GTGTCCAGGGCAACGCTG 61.357 66.667 0.00 4.78 42.81 5.18 R
2433 2530 2.746277 GGAAGGTGCACGGCGATT 60.746 61.111 16.62 0.08 0.00 3.34 R
2643 2740 1.226407 CTCGATCTTGCTCGCGACA 60.226 57.895 3.71 5.94 38.52 4.35 R
2940 3040 2.028385 ACCTACCGACTTGTGTTCATCC 60.028 50.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.369654 GGGTTACACGGGGAAGACT 58.630 57.895 0.00 0.00 0.00 3.24
19 20 0.036671 GGGTTACACGGGGAAGACTG 60.037 60.000 0.00 0.00 0.00 3.51
20 21 0.672711 GGTTACACGGGGAAGACTGC 60.673 60.000 0.00 0.00 0.00 4.40
21 22 0.320697 GTTACACGGGGAAGACTGCT 59.679 55.000 0.00 0.00 0.00 4.24
22 23 1.053424 TTACACGGGGAAGACTGCTT 58.947 50.000 0.00 0.00 36.96 3.91
23 24 0.320374 TACACGGGGAAGACTGCTTG 59.680 55.000 0.00 0.00 33.61 4.01
24 25 1.071471 CACGGGGAAGACTGCTTGT 59.929 57.895 0.00 0.00 33.61 3.16
25 26 0.535102 CACGGGGAAGACTGCTTGTT 60.535 55.000 0.00 0.00 33.61 2.83
26 27 1.053424 ACGGGGAAGACTGCTTGTTA 58.947 50.000 0.00 0.00 33.61 2.41
27 28 1.002087 ACGGGGAAGACTGCTTGTTAG 59.998 52.381 0.00 0.00 33.61 2.34
28 29 1.002087 CGGGGAAGACTGCTTGTTAGT 59.998 52.381 0.00 0.00 33.61 2.24
29 30 2.427506 GGGGAAGACTGCTTGTTAGTG 58.572 52.381 0.00 0.00 33.61 2.74
30 31 2.224548 GGGGAAGACTGCTTGTTAGTGT 60.225 50.000 0.00 0.00 33.61 3.55
31 32 2.808543 GGGAAGACTGCTTGTTAGTGTG 59.191 50.000 0.00 0.00 33.61 3.82
32 33 2.224314 GGAAGACTGCTTGTTAGTGTGC 59.776 50.000 0.00 0.00 33.61 4.57
33 34 2.620251 AGACTGCTTGTTAGTGTGCA 57.380 45.000 0.00 0.00 0.00 4.57
34 35 2.917933 AGACTGCTTGTTAGTGTGCAA 58.082 42.857 0.00 0.00 34.90 4.08
35 36 3.278574 AGACTGCTTGTTAGTGTGCAAA 58.721 40.909 0.00 0.00 34.90 3.68
36 37 3.694072 AGACTGCTTGTTAGTGTGCAAAA 59.306 39.130 0.00 0.00 34.90 2.44
37 38 4.339247 AGACTGCTTGTTAGTGTGCAAAAT 59.661 37.500 0.00 0.00 34.90 1.82
38 39 5.530915 AGACTGCTTGTTAGTGTGCAAAATA 59.469 36.000 0.00 0.00 34.90 1.40
39 40 5.762045 ACTGCTTGTTAGTGTGCAAAATAG 58.238 37.500 0.00 0.00 34.90 1.73
40 41 5.530915 ACTGCTTGTTAGTGTGCAAAATAGA 59.469 36.000 0.00 0.00 34.90 1.98
41 42 6.000891 TGCTTGTTAGTGTGCAAAATAGAG 57.999 37.500 0.00 0.00 32.12 2.43
42 43 5.762711 TGCTTGTTAGTGTGCAAAATAGAGA 59.237 36.000 0.00 0.00 32.12 3.10
43 44 6.262049 TGCTTGTTAGTGTGCAAAATAGAGAA 59.738 34.615 0.00 0.00 32.12 2.87
44 45 7.138736 GCTTGTTAGTGTGCAAAATAGAGAAA 58.861 34.615 0.00 0.00 0.00 2.52
45 46 7.647715 GCTTGTTAGTGTGCAAAATAGAGAAAA 59.352 33.333 0.00 0.00 0.00 2.29
46 47 8.850454 TTGTTAGTGTGCAAAATAGAGAAAAC 57.150 30.769 0.00 0.00 0.00 2.43
47 48 8.220755 TGTTAGTGTGCAAAATAGAGAAAACT 57.779 30.769 0.00 0.00 0.00 2.66
48 49 9.332502 TGTTAGTGTGCAAAATAGAGAAAACTA 57.667 29.630 0.00 0.00 0.00 2.24
52 53 9.066892 AGTGTGCAAAATAGAGAAAACTAATGA 57.933 29.630 0.00 0.00 0.00 2.57
53 54 9.334693 GTGTGCAAAATAGAGAAAACTAATGAG 57.665 33.333 0.00 0.00 0.00 2.90
54 55 9.283768 TGTGCAAAATAGAGAAAACTAATGAGA 57.716 29.630 0.00 0.00 0.00 3.27
55 56 9.548208 GTGCAAAATAGAGAAAACTAATGAGAC 57.452 33.333 0.00 0.00 0.00 3.36
56 57 8.443160 TGCAAAATAGAGAAAACTAATGAGACG 58.557 33.333 0.00 0.00 0.00 4.18
57 58 8.443937 GCAAAATAGAGAAAACTAATGAGACGT 58.556 33.333 0.00 0.00 0.00 4.34
58 59 9.959775 CAAAATAGAGAAAACTAATGAGACGTC 57.040 33.333 7.70 7.70 0.00 4.34
59 60 7.972623 AATAGAGAAAACTAATGAGACGTCG 57.027 36.000 10.46 0.00 0.00 5.12
60 61 4.734917 AGAGAAAACTAATGAGACGTCGG 58.265 43.478 10.46 0.49 0.00 4.79
61 62 4.458295 AGAGAAAACTAATGAGACGTCGGA 59.542 41.667 10.46 0.36 0.00 4.55
62 63 5.125739 AGAGAAAACTAATGAGACGTCGGAT 59.874 40.000 10.46 3.08 0.00 4.18
63 64 5.341617 AGAAAACTAATGAGACGTCGGATC 58.658 41.667 10.46 2.91 0.00 3.36
64 65 4.985538 AAACTAATGAGACGTCGGATCT 57.014 40.909 10.46 0.00 0.00 2.75
65 66 4.985538 AACTAATGAGACGTCGGATCTT 57.014 40.909 10.46 3.78 0.00 2.40
66 67 4.294416 ACTAATGAGACGTCGGATCTTG 57.706 45.455 10.46 2.15 0.00 3.02
67 68 2.586258 AATGAGACGTCGGATCTTGG 57.414 50.000 10.46 0.00 0.00 3.61
68 69 1.763968 ATGAGACGTCGGATCTTGGA 58.236 50.000 10.46 0.00 0.00 3.53
69 70 1.763968 TGAGACGTCGGATCTTGGAT 58.236 50.000 10.46 0.00 0.00 3.41
70 71 1.405463 TGAGACGTCGGATCTTGGATG 59.595 52.381 10.46 0.00 0.00 3.51
71 72 0.747255 AGACGTCGGATCTTGGATGG 59.253 55.000 10.46 0.00 0.00 3.51
72 73 0.744874 GACGTCGGATCTTGGATGGA 59.255 55.000 0.00 0.00 0.00 3.41
73 74 1.341531 GACGTCGGATCTTGGATGGAT 59.658 52.381 0.00 0.00 0.00 3.41
74 75 1.069204 ACGTCGGATCTTGGATGGATG 59.931 52.381 0.00 0.00 0.00 3.51
75 76 1.069204 CGTCGGATCTTGGATGGATGT 59.931 52.381 0.00 0.00 0.00 3.06
76 77 2.760374 GTCGGATCTTGGATGGATGTC 58.240 52.381 0.00 0.00 0.00 3.06
77 78 2.366916 GTCGGATCTTGGATGGATGTCT 59.633 50.000 0.00 0.00 0.00 3.41
78 79 3.041211 TCGGATCTTGGATGGATGTCTT 58.959 45.455 0.00 0.00 0.00 3.01
79 80 3.136763 CGGATCTTGGATGGATGTCTTG 58.863 50.000 0.00 0.00 0.00 3.02
80 81 3.484407 GGATCTTGGATGGATGTCTTGG 58.516 50.000 0.00 0.00 0.00 3.61
81 82 3.137176 GGATCTTGGATGGATGTCTTGGA 59.863 47.826 0.00 0.00 0.00 3.53
82 83 4.202545 GGATCTTGGATGGATGTCTTGGAT 60.203 45.833 0.00 0.00 0.00 3.41
83 84 4.160642 TCTTGGATGGATGTCTTGGATG 57.839 45.455 0.00 0.00 0.00 3.51
84 85 3.781965 TCTTGGATGGATGTCTTGGATGA 59.218 43.478 0.00 0.00 0.00 2.92
85 86 4.227982 TCTTGGATGGATGTCTTGGATGAA 59.772 41.667 0.00 0.00 0.00 2.57
86 87 3.889815 TGGATGGATGTCTTGGATGAAC 58.110 45.455 0.00 0.00 0.00 3.18
87 88 3.217626 GGATGGATGTCTTGGATGAACC 58.782 50.000 0.00 0.00 39.54 3.62
96 97 2.777536 TGGATGAACCACAGGAGCT 58.222 52.632 0.00 0.00 44.64 4.09
97 98 0.325933 TGGATGAACCACAGGAGCTG 59.674 55.000 0.00 0.00 44.64 4.24
98 99 0.393537 GGATGAACCACAGGAGCTGG 60.394 60.000 0.00 0.00 38.79 4.85
99 100 0.326264 GATGAACCACAGGAGCTGGT 59.674 55.000 0.00 0.00 44.39 4.00
100 101 0.037303 ATGAACCACAGGAGCTGGTG 59.963 55.000 0.00 0.00 41.45 4.17
101 102 1.302832 GAACCACAGGAGCTGGTGG 60.303 63.158 21.31 21.31 41.45 4.61
102 103 1.768684 GAACCACAGGAGCTGGTGGA 61.769 60.000 26.92 0.00 41.45 4.02
103 104 1.352622 AACCACAGGAGCTGGTGGAA 61.353 55.000 26.92 0.00 41.45 3.53
104 105 1.002868 CCACAGGAGCTGGTGGAAG 60.003 63.158 19.26 0.26 35.92 3.46
105 106 1.002868 CACAGGAGCTGGTGGAAGG 60.003 63.158 0.00 0.00 35.51 3.46
106 107 1.152030 ACAGGAGCTGGTGGAAGGA 60.152 57.895 0.00 0.00 35.51 3.36
107 108 1.298014 CAGGAGCTGGTGGAAGGAC 59.702 63.158 0.00 0.00 0.00 3.85
108 109 1.920835 AGGAGCTGGTGGAAGGACC 60.921 63.158 0.00 0.00 39.54 4.46
109 110 1.920835 GGAGCTGGTGGAAGGACCT 60.921 63.158 0.00 0.00 39.86 3.85
110 111 0.617820 GGAGCTGGTGGAAGGACCTA 60.618 60.000 0.00 0.00 39.86 3.08
111 112 1.276622 GAGCTGGTGGAAGGACCTAA 58.723 55.000 0.00 0.00 39.86 2.69
112 113 1.840635 GAGCTGGTGGAAGGACCTAAT 59.159 52.381 0.00 0.00 39.86 1.73
113 114 1.840635 AGCTGGTGGAAGGACCTAATC 59.159 52.381 0.00 0.00 39.86 1.75
114 115 1.840635 GCTGGTGGAAGGACCTAATCT 59.159 52.381 0.00 0.00 39.86 2.40
115 116 3.039011 GCTGGTGGAAGGACCTAATCTA 58.961 50.000 0.00 0.00 39.86 1.98
116 117 3.648545 GCTGGTGGAAGGACCTAATCTAT 59.351 47.826 0.00 0.00 39.86 1.98
117 118 4.262678 GCTGGTGGAAGGACCTAATCTATC 60.263 50.000 0.00 0.00 39.86 2.08
118 119 5.151454 CTGGTGGAAGGACCTAATCTATCT 58.849 45.833 0.00 0.00 39.86 1.98
119 120 6.289482 TGGTGGAAGGACCTAATCTATCTA 57.711 41.667 0.00 0.00 39.86 1.98
120 121 6.875469 TGGTGGAAGGACCTAATCTATCTAT 58.125 40.000 0.00 0.00 39.86 1.98
121 122 8.008104 TGGTGGAAGGACCTAATCTATCTATA 57.992 38.462 0.00 0.00 39.86 1.31
122 123 8.461854 TGGTGGAAGGACCTAATCTATCTATAA 58.538 37.037 0.00 0.00 39.86 0.98
123 124 8.751242 GGTGGAAGGACCTAATCTATCTATAAC 58.249 40.741 0.00 0.00 39.86 1.89
124 125 9.536510 GTGGAAGGACCTAATCTATCTATAACT 57.463 37.037 0.00 0.00 39.86 2.24
145 146 9.823647 ATAACTATTAGTCAGTGGAGTTTCATG 57.176 33.333 0.00 0.00 0.00 3.07
146 147 7.482169 ACTATTAGTCAGTGGAGTTTCATGA 57.518 36.000 0.00 0.00 0.00 3.07
147 148 7.907389 ACTATTAGTCAGTGGAGTTTCATGAA 58.093 34.615 3.38 3.38 0.00 2.57
148 149 8.375506 ACTATTAGTCAGTGGAGTTTCATGAAA 58.624 33.333 16.91 16.91 0.00 2.69
149 150 9.388506 CTATTAGTCAGTGGAGTTTCATGAAAT 57.611 33.333 23.05 12.45 32.36 2.17
166 167 6.966534 ATGAAATGATAATGAAGGTCCACC 57.033 37.500 0.00 0.00 0.00 4.61
175 176 3.217231 AGGTCCACCTATTCCGCG 58.783 61.111 0.00 0.00 46.48 6.46
176 177 2.108362 GGTCCACCTATTCCGCGG 59.892 66.667 22.12 22.12 0.00 6.46
177 178 2.108362 GTCCACCTATTCCGCGGG 59.892 66.667 27.83 11.50 0.00 6.13
178 179 2.042741 TCCACCTATTCCGCGGGA 60.043 61.111 27.83 20.01 0.00 5.14
179 180 1.458777 TCCACCTATTCCGCGGGAT 60.459 57.895 25.17 25.17 0.00 3.85
180 181 0.178955 TCCACCTATTCCGCGGGATA 60.179 55.000 24.66 24.66 0.00 2.59
181 182 0.037605 CCACCTATTCCGCGGGATAC 60.038 60.000 27.83 0.00 0.00 2.24
182 183 0.677288 CACCTATTCCGCGGGATACA 59.323 55.000 27.83 7.07 39.74 2.29
183 184 1.275291 CACCTATTCCGCGGGATACAT 59.725 52.381 27.83 12.13 39.74 2.29
184 185 2.494471 CACCTATTCCGCGGGATACATA 59.506 50.000 27.83 5.77 39.74 2.29
185 186 3.132289 CACCTATTCCGCGGGATACATAT 59.868 47.826 27.83 1.89 39.74 1.78
186 187 4.340097 CACCTATTCCGCGGGATACATATA 59.660 45.833 27.83 4.46 39.74 0.86
187 188 5.010719 CACCTATTCCGCGGGATACATATAT 59.989 44.000 27.83 0.06 39.74 0.86
188 189 6.208007 CACCTATTCCGCGGGATACATATATA 59.792 42.308 27.83 2.74 39.74 0.86
189 190 6.433404 ACCTATTCCGCGGGATACATATATAG 59.567 42.308 27.83 13.44 39.74 1.31
190 191 5.723672 ATTCCGCGGGATACATATATAGG 57.276 43.478 27.83 0.00 39.74 2.57
191 192 4.442401 TCCGCGGGATACATATATAGGA 57.558 45.455 27.83 0.00 39.74 2.94
192 193 4.994282 TCCGCGGGATACATATATAGGAT 58.006 43.478 27.83 0.00 39.74 3.24
193 194 5.008331 TCCGCGGGATACATATATAGGATC 58.992 45.833 27.83 0.00 39.74 3.36
194 195 5.010933 CCGCGGGATACATATATAGGATCT 58.989 45.833 20.10 0.00 39.74 2.75
195 196 5.106118 CCGCGGGATACATATATAGGATCTG 60.106 48.000 20.10 0.00 39.74 2.90
196 197 5.705905 CGCGGGATACATATATAGGATCTGA 59.294 44.000 0.00 0.00 39.74 3.27
197 198 6.375736 CGCGGGATACATATATAGGATCTGAT 59.624 42.308 0.00 0.00 39.74 2.90
198 199 7.542890 GCGGGATACATATATAGGATCTGATG 58.457 42.308 0.54 0.00 39.74 3.07
199 200 7.363355 GCGGGATACATATATAGGATCTGATGG 60.363 44.444 0.54 0.00 39.74 3.51
200 201 7.363355 CGGGATACATATATAGGATCTGATGGC 60.363 44.444 0.54 0.00 39.74 4.40
201 202 7.677745 GGGATACATATATAGGATCTGATGGCT 59.322 40.741 0.54 0.00 39.74 4.75
202 203 8.748412 GGATACATATATAGGATCTGATGGCTC 58.252 40.741 0.54 0.00 0.00 4.70
203 204 9.532494 GATACATATATAGGATCTGATGGCTCT 57.468 37.037 0.54 0.00 0.00 4.09
204 205 9.895507 ATACATATATAGGATCTGATGGCTCTT 57.104 33.333 0.54 0.00 0.00 2.85
205 206 8.020777 ACATATATAGGATCTGATGGCTCTTG 57.979 38.462 0.54 0.00 0.00 3.02
206 207 7.622878 ACATATATAGGATCTGATGGCTCTTGT 59.377 37.037 0.54 0.00 0.00 3.16
207 208 4.888326 ATAGGATCTGATGGCTCTTGTC 57.112 45.455 0.00 0.00 0.00 3.18
208 209 2.475155 AGGATCTGATGGCTCTTGTCA 58.525 47.619 0.00 0.00 0.00 3.58
209 210 2.435069 AGGATCTGATGGCTCTTGTCAG 59.565 50.000 0.00 0.00 40.48 3.51
213 214 4.564782 TCTGATGGCTCTTGTCAGATTT 57.435 40.909 0.51 0.00 42.36 2.17
214 215 4.914983 TCTGATGGCTCTTGTCAGATTTT 58.085 39.130 0.51 0.00 42.36 1.82
215 216 5.319453 TCTGATGGCTCTTGTCAGATTTTT 58.681 37.500 0.51 0.00 42.36 1.94
250 251 4.227512 CACACTAAGTGCTTTGATTGCA 57.772 40.909 0.00 0.00 42.15 4.08
251 252 4.224433 CACACTAAGTGCTTTGATTGCAG 58.776 43.478 0.00 0.00 42.15 4.41
252 253 3.885297 ACACTAAGTGCTTTGATTGCAGT 59.115 39.130 0.00 0.00 44.88 4.40
256 257 3.102052 AGTGCTTTGATTGCAGTTTGG 57.898 42.857 0.00 0.00 40.75 3.28
257 258 1.528161 GTGCTTTGATTGCAGTTTGGC 59.472 47.619 0.00 0.00 41.41 4.52
258 259 1.150827 GCTTTGATTGCAGTTTGGCC 58.849 50.000 0.00 0.00 0.00 5.36
259 260 1.421382 CTTTGATTGCAGTTTGGCCG 58.579 50.000 0.00 0.00 0.00 6.13
260 261 0.749649 TTTGATTGCAGTTTGGCCGT 59.250 45.000 0.00 0.00 0.00 5.68
261 262 0.031857 TTGATTGCAGTTTGGCCGTG 59.968 50.000 0.00 0.00 0.00 4.94
262 263 1.106351 TGATTGCAGTTTGGCCGTGT 61.106 50.000 0.00 0.00 0.00 4.49
263 264 0.031994 GATTGCAGTTTGGCCGTGTT 59.968 50.000 0.00 0.00 0.00 3.32
264 265 1.268352 GATTGCAGTTTGGCCGTGTTA 59.732 47.619 0.00 0.00 0.00 2.41
265 266 0.382515 TTGCAGTTTGGCCGTGTTAC 59.617 50.000 0.00 0.00 0.00 2.50
266 267 0.748367 TGCAGTTTGGCCGTGTTACA 60.748 50.000 0.00 0.00 0.00 2.41
267 268 0.317519 GCAGTTTGGCCGTGTTACAC 60.318 55.000 5.27 5.27 0.00 2.90
268 269 0.309612 CAGTTTGGCCGTGTTACACC 59.690 55.000 10.10 0.00 0.00 4.16
269 270 1.161563 AGTTTGGCCGTGTTACACCG 61.162 55.000 10.10 4.67 0.00 4.94
270 271 2.544698 TTTGGCCGTGTTACACCGC 61.545 57.895 17.86 17.86 37.74 5.68
273 274 2.744709 GCCGTGTTACACCGCCAT 60.745 61.111 15.85 0.00 33.76 4.40
274 275 2.329614 GCCGTGTTACACCGCCATT 61.330 57.895 15.85 0.00 33.76 3.16
275 276 1.499949 CCGTGTTACACCGCCATTG 59.500 57.895 10.10 0.00 0.00 2.82
276 277 1.154301 CGTGTTACACCGCCATTGC 60.154 57.895 10.10 0.00 0.00 3.56
277 278 1.846849 CGTGTTACACCGCCATTGCA 61.847 55.000 10.10 0.00 37.32 4.08
278 279 0.109781 GTGTTACACCGCCATTGCAG 60.110 55.000 3.79 0.00 37.32 4.41
279 280 1.154035 GTTACACCGCCATTGCAGC 60.154 57.895 0.00 0.00 37.32 5.25
280 281 2.339556 TTACACCGCCATTGCAGCC 61.340 57.895 0.00 0.00 37.32 4.85
281 282 3.559511 TACACCGCCATTGCAGCCA 62.560 57.895 0.00 0.00 37.32 4.75
282 283 4.424566 CACCGCCATTGCAGCCAC 62.425 66.667 0.00 0.00 37.32 5.01
285 286 3.818787 CGCCATTGCAGCCACCTC 61.819 66.667 0.00 0.00 37.32 3.85
286 287 2.677524 GCCATTGCAGCCACCTCA 60.678 61.111 0.00 0.00 37.47 3.86
287 288 2.998279 GCCATTGCAGCCACCTCAC 61.998 63.158 0.00 0.00 37.47 3.51
288 289 1.604308 CCATTGCAGCCACCTCACA 60.604 57.895 0.00 0.00 0.00 3.58
289 290 0.968901 CCATTGCAGCCACCTCACAT 60.969 55.000 0.00 0.00 0.00 3.21
290 291 0.454600 CATTGCAGCCACCTCACATC 59.545 55.000 0.00 0.00 0.00 3.06
291 292 0.682209 ATTGCAGCCACCTCACATCC 60.682 55.000 0.00 0.00 0.00 3.51
292 293 2.821366 GCAGCCACCTCACATCCG 60.821 66.667 0.00 0.00 0.00 4.18
293 294 2.821366 CAGCCACCTCACATCCGC 60.821 66.667 0.00 0.00 0.00 5.54
294 295 3.005539 AGCCACCTCACATCCGCT 61.006 61.111 0.00 0.00 0.00 5.52
295 296 2.821366 GCCACCTCACATCCGCTG 60.821 66.667 0.00 0.00 0.00 5.18
296 297 2.981302 CCACCTCACATCCGCTGA 59.019 61.111 0.00 0.00 0.00 4.26
297 298 1.448540 CCACCTCACATCCGCTGAC 60.449 63.158 0.00 0.00 0.00 3.51
298 299 1.448540 CACCTCACATCCGCTGACC 60.449 63.158 0.00 0.00 0.00 4.02
299 300 1.913262 ACCTCACATCCGCTGACCA 60.913 57.895 0.00 0.00 0.00 4.02
300 301 1.448540 CCTCACATCCGCTGACCAC 60.449 63.158 0.00 0.00 0.00 4.16
301 302 1.293179 CTCACATCCGCTGACCACA 59.707 57.895 0.00 0.00 0.00 4.17
302 303 0.107993 CTCACATCCGCTGACCACAT 60.108 55.000 0.00 0.00 0.00 3.21
303 304 0.108186 TCACATCCGCTGACCACATC 60.108 55.000 0.00 0.00 0.00 3.06
304 305 1.091771 CACATCCGCTGACCACATCC 61.092 60.000 0.00 0.00 0.00 3.51
305 306 1.267574 ACATCCGCTGACCACATCCT 61.268 55.000 0.00 0.00 0.00 3.24
306 307 0.531532 CATCCGCTGACCACATCCTC 60.532 60.000 0.00 0.00 0.00 3.71
307 308 2.021068 ATCCGCTGACCACATCCTCG 62.021 60.000 0.00 0.00 0.00 4.63
308 309 2.202797 CGCTGACCACATCCTCGG 60.203 66.667 0.00 0.00 0.00 4.63
309 310 2.187946 GCTGACCACATCCTCGGG 59.812 66.667 0.00 0.00 0.00 5.14
310 311 2.903357 CTGACCACATCCTCGGGG 59.097 66.667 0.00 0.00 0.00 5.73
311 312 2.687200 TGACCACATCCTCGGGGG 60.687 66.667 0.00 0.00 0.00 5.40
312 313 4.176752 GACCACATCCTCGGGGGC 62.177 72.222 0.00 0.00 34.39 5.80
315 316 4.530857 CACATCCTCGGGGGCGTC 62.531 72.222 0.00 0.00 34.39 5.19
317 318 4.530857 CATCCTCGGGGGCGTCAC 62.531 72.222 0.00 0.00 34.39 3.67
327 328 2.738480 GGCGTCACCCAGTGTACA 59.262 61.111 0.00 0.00 34.79 2.90
328 329 1.666872 GGCGTCACCCAGTGTACAC 60.667 63.158 18.56 18.56 34.79 2.90
329 330 1.666872 GCGTCACCCAGTGTACACC 60.667 63.158 22.28 4.32 34.79 4.16
330 331 1.743391 CGTCACCCAGTGTACACCA 59.257 57.895 22.28 0.00 34.79 4.17
331 332 0.599204 CGTCACCCAGTGTACACCAC 60.599 60.000 22.28 8.66 44.89 4.16
332 333 0.250166 GTCACCCAGTGTACACCACC 60.250 60.000 22.28 0.00 45.74 4.61
333 334 1.072505 CACCCAGTGTACACCACCC 59.927 63.158 22.28 0.00 45.74 4.61
334 335 1.074014 ACCCAGTGTACACCACCCT 60.074 57.895 22.28 0.13 45.74 4.34
335 336 1.125711 ACCCAGTGTACACCACCCTC 61.126 60.000 22.28 0.00 45.74 4.30
336 337 1.125093 CCCAGTGTACACCACCCTCA 61.125 60.000 22.28 0.00 45.74 3.86
337 338 0.984230 CCAGTGTACACCACCCTCAT 59.016 55.000 22.28 0.00 45.74 2.90
338 339 1.339055 CCAGTGTACACCACCCTCATG 60.339 57.143 22.28 11.02 45.74 3.07
339 340 0.324943 AGTGTACACCACCCTCATGC 59.675 55.000 22.28 0.00 45.74 4.06
340 341 0.676782 GTGTACACCACCCTCATGCC 60.677 60.000 15.42 0.00 38.18 4.40
341 342 0.840288 TGTACACCACCCTCATGCCT 60.840 55.000 0.00 0.00 0.00 4.75
342 343 0.328258 GTACACCACCCTCATGCCTT 59.672 55.000 0.00 0.00 0.00 4.35
343 344 0.618458 TACACCACCCTCATGCCTTC 59.382 55.000 0.00 0.00 0.00 3.46
344 345 1.746615 CACCACCCTCATGCCTTCG 60.747 63.158 0.00 0.00 0.00 3.79
345 346 2.825836 CCACCCTCATGCCTTCGC 60.826 66.667 0.00 0.00 0.00 4.70
354 355 4.047834 TGCCTTCGCAGACAACTG 57.952 55.556 0.00 0.00 41.12 3.16
355 356 1.146041 TGCCTTCGCAGACAACTGT 59.854 52.632 0.00 0.00 45.04 3.55
356 357 0.880278 TGCCTTCGCAGACAACTGTC 60.880 55.000 1.40 1.40 45.04 3.51
364 365 4.006532 GACAACTGTCACGTCGCA 57.993 55.556 4.96 0.00 44.18 5.10
365 366 2.517598 GACAACTGTCACGTCGCAT 58.482 52.632 4.96 0.00 44.18 4.73
366 367 0.161658 GACAACTGTCACGTCGCATG 59.838 55.000 4.96 0.00 44.18 4.06
367 368 0.529773 ACAACTGTCACGTCGCATGT 60.530 50.000 0.00 0.00 0.00 3.21
368 369 0.111134 CAACTGTCACGTCGCATGTG 60.111 55.000 0.00 0.00 36.48 3.21
369 370 1.221466 AACTGTCACGTCGCATGTGG 61.221 55.000 6.39 0.00 35.86 4.17
370 371 3.015293 CTGTCACGTCGCATGTGGC 62.015 63.158 6.39 2.99 40.01 5.01
371 372 3.788766 GTCACGTCGCATGTGGCC 61.789 66.667 5.06 0.00 40.31 5.36
372 373 4.002506 TCACGTCGCATGTGGCCT 62.003 61.111 3.32 0.00 40.31 5.19
373 374 3.792047 CACGTCGCATGTGGCCTG 61.792 66.667 3.32 0.00 40.31 4.85
376 377 4.107051 GTCGCATGTGGCCTGCAC 62.107 66.667 15.08 8.70 39.64 4.57
380 381 3.434319 CATGTGGCCTGCACGGTC 61.434 66.667 3.32 0.39 38.12 4.79
381 382 4.722700 ATGTGGCCTGCACGGTCC 62.723 66.667 3.32 6.55 36.18 4.46
406 407 3.078097 TGTTGGATAAACACGACCATGG 58.922 45.455 11.19 11.19 43.96 3.66
407 408 3.078837 GTTGGATAAACACGACCATGGT 58.921 45.455 19.89 19.89 38.75 3.55
408 409 4.255301 GTTGGATAAACACGACCATGGTA 58.745 43.478 19.80 0.00 38.75 3.25
409 410 4.764050 TGGATAAACACGACCATGGTAT 57.236 40.909 19.80 6.30 0.00 2.73
410 411 4.699637 TGGATAAACACGACCATGGTATC 58.300 43.478 19.80 14.76 0.00 2.24
411 412 4.162509 TGGATAAACACGACCATGGTATCA 59.837 41.667 19.80 3.84 0.00 2.15
412 413 4.510340 GGATAAACACGACCATGGTATCAC 59.490 45.833 19.80 4.02 0.00 3.06
413 414 3.410631 AAACACGACCATGGTATCACA 57.589 42.857 19.80 0.00 0.00 3.58
414 415 2.672961 ACACGACCATGGTATCACAG 57.327 50.000 19.80 7.49 0.00 3.66
415 416 1.290203 CACGACCATGGTATCACAGC 58.710 55.000 19.80 1.92 0.00 4.40
416 417 0.179111 ACGACCATGGTATCACAGCG 60.179 55.000 19.80 17.43 0.00 5.18
417 418 0.875908 CGACCATGGTATCACAGCGG 60.876 60.000 19.80 0.00 0.00 5.52
418 419 0.178068 GACCATGGTATCACAGCGGT 59.822 55.000 19.80 0.00 34.01 5.68
441 442 4.043037 ACAACCTCGGAGATTAATCGTC 57.957 45.455 6.58 7.83 33.89 4.20
446 447 3.815962 CCTCGGAGATTAATCGTCTCTCA 59.184 47.826 6.58 0.00 41.42 3.27
452 453 5.312120 AGATTAATCGTCTCTCAACACGT 57.688 39.130 9.78 0.00 37.30 4.49
456 457 2.401017 TCGTCTCTCAACACGTCAAG 57.599 50.000 0.00 0.00 37.30 3.02
462 463 5.227908 GTCTCTCAACACGTCAAGGATAAA 58.772 41.667 0.00 0.00 0.00 1.40
473 474 6.980978 CACGTCAAGGATAAACTACATCTCAT 59.019 38.462 0.00 0.00 0.00 2.90
482 483 8.470805 GGATAAACTACATCTCATATCGATGGT 58.529 37.037 8.54 0.00 41.91 3.55
594 611 2.260869 TGCGGGAGAAAAGCAGTGC 61.261 57.895 7.13 7.13 35.81 4.40
631 648 1.202940 AGAAAGACAGGAAAGGTGGCC 60.203 52.381 0.00 0.00 0.00 5.36
634 651 1.280457 AGACAGGAAAGGTGGCCTAG 58.720 55.000 3.32 0.00 31.13 3.02
700 725 2.643232 GGAAGGCTGCCTGCTTTGG 61.643 63.158 25.58 0.00 41.21 3.28
701 726 2.602568 AAGGCTGCCTGCTTTGGG 60.603 61.111 24.16 0.00 39.60 4.12
796 826 2.601666 TGACGCTCACTGCTCCCT 60.602 61.111 0.00 0.00 40.11 4.20
799 829 4.154347 CGCTCACTGCTCCCTCCC 62.154 72.222 0.00 0.00 40.11 4.30
801 831 2.284921 CTCACTGCTCCCTCCCCA 60.285 66.667 0.00 0.00 0.00 4.96
1038 1075 1.300963 GACATTCCAGCTGCTCCCA 59.699 57.895 8.66 0.00 0.00 4.37
1095 1150 2.281761 CAGCACCACCACCAGGAC 60.282 66.667 0.00 0.00 38.69 3.85
1096 1151 3.570212 AGCACCACCACCAGGACC 61.570 66.667 0.00 0.00 38.69 4.46
1523 1611 0.803768 CTTGACCTCGACCGCATCAG 60.804 60.000 0.00 0.00 0.00 2.90
1702 1793 3.755628 CTTCCTTCGACCCGGCGA 61.756 66.667 9.30 0.00 38.72 5.54
1703 1794 3.291101 CTTCCTTCGACCCGGCGAA 62.291 63.158 9.30 14.84 46.77 4.70
1992 2089 3.132111 CCTTCTACTTCAAGGAGGCTCTC 59.868 52.174 15.23 4.64 42.94 3.20
2199 2296 1.586564 GCTCGACTTCGACATCGGG 60.587 63.158 15.40 13.79 44.22 5.14
2403 2500 2.987547 GACTCCGTCGACCCCACA 60.988 66.667 10.58 0.00 0.00 4.17
2622 2719 1.760086 CCTGCTCGAGTCCCTGGAT 60.760 63.158 15.13 0.00 0.00 3.41
3232 3348 6.070767 TGCTATTGGTTCTCTGTTAACTAGCT 60.071 38.462 7.22 0.00 33.06 3.32
3234 3350 7.334671 GCTATTGGTTCTCTGTTAACTAGCTTT 59.665 37.037 7.22 0.00 30.98 3.51
3248 3364 9.874215 GTTAACTAGCTTTCAAAAACGTCTTAT 57.126 29.630 0.00 0.00 0.00 1.73
3272 3388 5.640189 TTTTGAGACGGAGGTAGAACTAG 57.360 43.478 0.00 0.00 0.00 2.57
3326 3445 3.960102 ACCTTGCATCCTTCAGTTCAAAA 59.040 39.130 0.00 0.00 0.00 2.44
3360 3479 3.817647 GCCTGCTTTAGAGGATTATGGTG 59.182 47.826 0.00 0.00 31.48 4.17
3369 3488 5.184892 AGAGGATTATGGTGGCCATTATC 57.815 43.478 9.72 15.03 42.23 1.75
3370 3489 3.941483 GAGGATTATGGTGGCCATTATCG 59.059 47.826 9.72 0.00 45.50 2.92
3377 3496 1.880027 GGTGGCCATTATCGATTGTCC 59.120 52.381 9.72 0.00 0.00 4.02
3387 3506 7.119699 GCCATTATCGATTGTCCATAATCTTCA 59.880 37.037 1.71 0.00 35.42 3.02
3406 3525 2.813172 TCATGTTCTCGAAATGCTTGCA 59.187 40.909 0.00 0.00 0.00 4.08
3445 3564 8.706322 AAGGAGGCATTAGAGTAAAAGAAAAA 57.294 30.769 0.00 0.00 0.00 1.94
3516 3635 8.034215 TGGGAAAACAATATGCATTTAGTCAAG 58.966 33.333 3.54 0.00 0.00 3.02
3570 3693 6.770303 TCCGCCAAATTGACATCTAATATGAA 59.230 34.615 0.00 0.00 0.00 2.57
3571 3694 7.284261 TCCGCCAAATTGACATCTAATATGAAA 59.716 33.333 0.00 0.00 0.00 2.69
3610 3733 9.578439 ACTTGAATCAAAGAGTTCTTGAAAAAG 57.422 29.630 0.00 0.00 36.12 2.27
3795 3927 6.266323 TCTGTTCGACTAAATGTAGCTCATC 58.734 40.000 0.00 0.00 35.48 2.92
3820 3952 8.689061 TCGTACTAGCAATGAAGGTATTTTCTA 58.311 33.333 0.00 0.00 0.00 2.10
3865 3997 1.251251 ACATGGTCAGAAGCTTTGGC 58.749 50.000 0.00 2.47 39.06 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.036671 CAGTCTTCCCCGTGTAACCC 60.037 60.000 0.00 0.00 0.00 4.11
2 3 0.320697 AGCAGTCTTCCCCGTGTAAC 59.679 55.000 0.00 0.00 0.00 2.50
3 4 1.053424 AAGCAGTCTTCCCCGTGTAA 58.947 50.000 0.00 0.00 0.00 2.41
4 5 0.320374 CAAGCAGTCTTCCCCGTGTA 59.680 55.000 0.00 0.00 0.00 2.90
5 6 1.071471 CAAGCAGTCTTCCCCGTGT 59.929 57.895 0.00 0.00 0.00 4.49
6 7 0.535102 AACAAGCAGTCTTCCCCGTG 60.535 55.000 0.00 0.00 0.00 4.94
7 8 1.002087 CTAACAAGCAGTCTTCCCCGT 59.998 52.381 0.00 0.00 0.00 5.28
8 9 1.002087 ACTAACAAGCAGTCTTCCCCG 59.998 52.381 0.00 0.00 0.00 5.73
9 10 2.224548 ACACTAACAAGCAGTCTTCCCC 60.225 50.000 0.00 0.00 0.00 4.81
10 11 2.808543 CACACTAACAAGCAGTCTTCCC 59.191 50.000 0.00 0.00 0.00 3.97
11 12 2.224314 GCACACTAACAAGCAGTCTTCC 59.776 50.000 0.00 0.00 0.00 3.46
12 13 2.872245 TGCACACTAACAAGCAGTCTTC 59.128 45.455 0.00 0.00 32.48 2.87
13 14 2.917933 TGCACACTAACAAGCAGTCTT 58.082 42.857 0.00 0.00 32.48 3.01
14 15 2.620251 TGCACACTAACAAGCAGTCT 57.380 45.000 0.00 0.00 32.48 3.24
15 16 3.691049 TTTGCACACTAACAAGCAGTC 57.309 42.857 0.00 0.00 38.35 3.51
16 17 4.654091 ATTTTGCACACTAACAAGCAGT 57.346 36.364 0.00 0.00 38.35 4.40
17 18 6.000891 TCTATTTTGCACACTAACAAGCAG 57.999 37.500 0.00 0.00 38.35 4.24
18 19 5.762711 TCTCTATTTTGCACACTAACAAGCA 59.237 36.000 0.00 0.00 34.79 3.91
19 20 6.241207 TCTCTATTTTGCACACTAACAAGC 57.759 37.500 0.00 0.00 0.00 4.01
20 21 8.958043 GTTTTCTCTATTTTGCACACTAACAAG 58.042 33.333 0.00 0.00 0.00 3.16
21 22 8.682710 AGTTTTCTCTATTTTGCACACTAACAA 58.317 29.630 0.00 0.00 0.00 2.83
22 23 8.220755 AGTTTTCTCTATTTTGCACACTAACA 57.779 30.769 0.00 0.00 0.00 2.41
26 27 9.066892 TCATTAGTTTTCTCTATTTTGCACACT 57.933 29.630 0.00 0.00 0.00 3.55
27 28 9.334693 CTCATTAGTTTTCTCTATTTTGCACAC 57.665 33.333 0.00 0.00 0.00 3.82
28 29 9.283768 TCTCATTAGTTTTCTCTATTTTGCACA 57.716 29.630 0.00 0.00 0.00 4.57
29 30 9.548208 GTCTCATTAGTTTTCTCTATTTTGCAC 57.452 33.333 0.00 0.00 0.00 4.57
30 31 8.443160 CGTCTCATTAGTTTTCTCTATTTTGCA 58.557 33.333 0.00 0.00 0.00 4.08
31 32 8.443937 ACGTCTCATTAGTTTTCTCTATTTTGC 58.556 33.333 0.00 0.00 0.00 3.68
32 33 9.959775 GACGTCTCATTAGTTTTCTCTATTTTG 57.040 33.333 8.70 0.00 0.00 2.44
33 34 8.861101 CGACGTCTCATTAGTTTTCTCTATTTT 58.139 33.333 14.70 0.00 0.00 1.82
34 35 7.488471 CCGACGTCTCATTAGTTTTCTCTATTT 59.512 37.037 14.70 0.00 0.00 1.40
35 36 6.973474 CCGACGTCTCATTAGTTTTCTCTATT 59.027 38.462 14.70 0.00 0.00 1.73
36 37 6.318144 TCCGACGTCTCATTAGTTTTCTCTAT 59.682 38.462 14.70 0.00 0.00 1.98
37 38 5.645067 TCCGACGTCTCATTAGTTTTCTCTA 59.355 40.000 14.70 0.00 0.00 2.43
38 39 4.458295 TCCGACGTCTCATTAGTTTTCTCT 59.542 41.667 14.70 0.00 0.00 3.10
39 40 4.730657 TCCGACGTCTCATTAGTTTTCTC 58.269 43.478 14.70 0.00 0.00 2.87
40 41 4.778534 TCCGACGTCTCATTAGTTTTCT 57.221 40.909 14.70 0.00 0.00 2.52
41 42 5.341617 AGATCCGACGTCTCATTAGTTTTC 58.658 41.667 14.70 0.00 0.00 2.29
42 43 5.326200 AGATCCGACGTCTCATTAGTTTT 57.674 39.130 14.70 0.00 0.00 2.43
43 44 4.985538 AGATCCGACGTCTCATTAGTTT 57.014 40.909 14.70 0.00 0.00 2.66
44 45 4.440250 CCAAGATCCGACGTCTCATTAGTT 60.440 45.833 14.70 0.00 0.00 2.24
45 46 3.066900 CCAAGATCCGACGTCTCATTAGT 59.933 47.826 14.70 0.00 0.00 2.24
46 47 3.315470 TCCAAGATCCGACGTCTCATTAG 59.685 47.826 14.70 0.00 0.00 1.73
47 48 3.284617 TCCAAGATCCGACGTCTCATTA 58.715 45.455 14.70 0.00 0.00 1.90
48 49 2.100197 TCCAAGATCCGACGTCTCATT 58.900 47.619 14.70 0.00 0.00 2.57
49 50 1.763968 TCCAAGATCCGACGTCTCAT 58.236 50.000 14.70 4.84 0.00 2.90
50 51 1.405463 CATCCAAGATCCGACGTCTCA 59.595 52.381 14.70 0.00 0.00 3.27
51 52 1.269309 CCATCCAAGATCCGACGTCTC 60.269 57.143 14.70 4.49 0.00 3.36
52 53 0.747255 CCATCCAAGATCCGACGTCT 59.253 55.000 14.70 0.00 0.00 4.18
53 54 0.744874 TCCATCCAAGATCCGACGTC 59.255 55.000 5.18 5.18 0.00 4.34
54 55 1.069204 CATCCATCCAAGATCCGACGT 59.931 52.381 0.00 0.00 0.00 4.34
55 56 1.069204 ACATCCATCCAAGATCCGACG 59.931 52.381 0.00 0.00 0.00 5.12
56 57 2.366916 AGACATCCATCCAAGATCCGAC 59.633 50.000 0.00 0.00 0.00 4.79
57 58 2.682594 AGACATCCATCCAAGATCCGA 58.317 47.619 0.00 0.00 0.00 4.55
58 59 3.136763 CAAGACATCCATCCAAGATCCG 58.863 50.000 0.00 0.00 0.00 4.18
59 60 3.137176 TCCAAGACATCCATCCAAGATCC 59.863 47.826 0.00 0.00 0.00 3.36
60 61 4.428294 TCCAAGACATCCATCCAAGATC 57.572 45.455 0.00 0.00 0.00 2.75
61 62 4.414514 TCATCCAAGACATCCATCCAAGAT 59.585 41.667 0.00 0.00 0.00 2.40
62 63 3.781965 TCATCCAAGACATCCATCCAAGA 59.218 43.478 0.00 0.00 0.00 3.02
63 64 4.160642 TCATCCAAGACATCCATCCAAG 57.839 45.455 0.00 0.00 0.00 3.61
64 65 4.272489 GTTCATCCAAGACATCCATCCAA 58.728 43.478 0.00 0.00 0.00 3.53
65 66 3.371917 GGTTCATCCAAGACATCCATCCA 60.372 47.826 0.00 0.00 35.97 3.41
66 67 3.217626 GGTTCATCCAAGACATCCATCC 58.782 50.000 0.00 0.00 35.97 3.51
67 68 3.889815 TGGTTCATCCAAGACATCCATC 58.110 45.455 0.00 0.00 44.12 3.51
78 79 0.325933 CAGCTCCTGTGGTTCATCCA 59.674 55.000 0.00 0.00 45.01 3.41
79 80 0.393537 CCAGCTCCTGTGGTTCATCC 60.394 60.000 0.00 0.00 0.00 3.51
80 81 0.326264 ACCAGCTCCTGTGGTTCATC 59.674 55.000 0.00 0.00 46.73 2.92
81 82 0.037303 CACCAGCTCCTGTGGTTCAT 59.963 55.000 0.00 0.00 46.73 2.57
82 83 1.451504 CACCAGCTCCTGTGGTTCA 59.548 57.895 0.00 0.00 46.73 3.18
83 84 1.302832 CCACCAGCTCCTGTGGTTC 60.303 63.158 15.40 0.00 46.73 3.62
84 85 1.352622 TTCCACCAGCTCCTGTGGTT 61.353 55.000 20.44 0.00 46.73 3.67
86 87 1.002868 CTTCCACCAGCTCCTGTGG 60.003 63.158 16.90 16.90 41.30 4.17
87 88 1.002868 CCTTCCACCAGCTCCTGTG 60.003 63.158 0.00 0.00 0.00 3.66
88 89 1.152030 TCCTTCCACCAGCTCCTGT 60.152 57.895 0.00 0.00 0.00 4.00
89 90 1.298014 GTCCTTCCACCAGCTCCTG 59.702 63.158 0.00 0.00 0.00 3.86
90 91 1.920835 GGTCCTTCCACCAGCTCCT 60.921 63.158 0.00 0.00 36.32 3.69
91 92 0.617820 TAGGTCCTTCCACCAGCTCC 60.618 60.000 0.00 0.00 39.16 4.70
92 93 1.276622 TTAGGTCCTTCCACCAGCTC 58.723 55.000 0.00 0.00 39.16 4.09
93 94 1.840635 GATTAGGTCCTTCCACCAGCT 59.159 52.381 0.00 0.00 39.16 4.24
94 95 1.840635 AGATTAGGTCCTTCCACCAGC 59.159 52.381 0.00 0.00 39.16 4.85
95 96 5.151454 AGATAGATTAGGTCCTTCCACCAG 58.849 45.833 0.00 0.00 39.16 4.00
96 97 5.157770 AGATAGATTAGGTCCTTCCACCA 57.842 43.478 0.00 0.00 39.16 4.17
97 98 8.751242 GTTATAGATAGATTAGGTCCTTCCACC 58.249 40.741 0.00 0.00 39.02 4.61
98 99 9.536510 AGTTATAGATAGATTAGGTCCTTCCAC 57.463 37.037 0.00 0.00 39.02 4.02
119 120 9.823647 CATGAAACTCCACTGACTAATAGTTAT 57.176 33.333 0.00 0.00 0.00 1.89
120 121 9.031537 TCATGAAACTCCACTGACTAATAGTTA 57.968 33.333 0.00 0.00 0.00 2.24
121 122 7.907389 TCATGAAACTCCACTGACTAATAGTT 58.093 34.615 0.00 0.00 0.00 2.24
122 123 7.482169 TCATGAAACTCCACTGACTAATAGT 57.518 36.000 0.00 0.00 0.00 2.12
123 124 8.777865 TTTCATGAAACTCCACTGACTAATAG 57.222 34.615 16.91 0.00 0.00 1.73
124 125 9.166173 CATTTCATGAAACTCCACTGACTAATA 57.834 33.333 22.71 0.00 32.51 0.98
125 126 7.884877 TCATTTCATGAAACTCCACTGACTAAT 59.115 33.333 22.71 0.00 36.11 1.73
126 127 7.223584 TCATTTCATGAAACTCCACTGACTAA 58.776 34.615 22.71 0.00 36.11 2.24
127 128 6.768483 TCATTTCATGAAACTCCACTGACTA 58.232 36.000 22.71 0.00 36.11 2.59
128 129 5.624159 TCATTTCATGAAACTCCACTGACT 58.376 37.500 22.71 0.44 36.11 3.41
129 130 5.947228 TCATTTCATGAAACTCCACTGAC 57.053 39.130 22.71 0.00 36.11 3.51
130 131 8.680001 CATTATCATTTCATGAAACTCCACTGA 58.320 33.333 22.71 19.76 43.50 3.41
131 132 8.680001 TCATTATCATTTCATGAAACTCCACTG 58.320 33.333 22.71 15.45 43.50 3.66
132 133 8.812513 TCATTATCATTTCATGAAACTCCACT 57.187 30.769 22.71 3.45 43.50 4.00
133 134 9.512435 CTTCATTATCATTTCATGAAACTCCAC 57.488 33.333 22.71 0.00 43.50 4.02
134 135 8.689061 CCTTCATTATCATTTCATGAAACTCCA 58.311 33.333 22.71 7.70 43.50 3.86
135 136 8.689972 ACCTTCATTATCATTTCATGAAACTCC 58.310 33.333 22.71 0.00 43.50 3.85
136 137 9.727627 GACCTTCATTATCATTTCATGAAACTC 57.272 33.333 22.71 0.00 43.50 3.01
137 138 8.689972 GGACCTTCATTATCATTTCATGAAACT 58.310 33.333 22.71 12.82 43.50 2.66
138 139 8.469200 TGGACCTTCATTATCATTTCATGAAAC 58.531 33.333 22.71 5.23 43.50 2.78
139 140 8.469200 GTGGACCTTCATTATCATTTCATGAAA 58.531 33.333 22.52 22.52 43.50 2.69
140 141 7.068593 GGTGGACCTTCATTATCATTTCATGAA 59.931 37.037 3.38 3.38 43.50 2.57
141 142 6.547141 GGTGGACCTTCATTATCATTTCATGA 59.453 38.462 0.00 0.00 44.55 3.07
142 143 6.548622 AGGTGGACCTTCATTATCATTTCATG 59.451 38.462 0.00 0.00 46.09 3.07
143 144 6.676558 AGGTGGACCTTCATTATCATTTCAT 58.323 36.000 0.00 0.00 46.09 2.57
144 145 6.078456 AGGTGGACCTTCATTATCATTTCA 57.922 37.500 0.00 0.00 46.09 2.69
145 146 8.697507 AATAGGTGGACCTTCATTATCATTTC 57.302 34.615 3.03 0.00 46.09 2.17
146 147 7.725844 GGAATAGGTGGACCTTCATTATCATTT 59.274 37.037 3.03 0.00 46.09 2.32
147 148 7.234355 GGAATAGGTGGACCTTCATTATCATT 58.766 38.462 3.03 0.00 46.09 2.57
148 149 6.520742 CGGAATAGGTGGACCTTCATTATCAT 60.521 42.308 3.03 0.00 46.09 2.45
149 150 5.221641 CGGAATAGGTGGACCTTCATTATCA 60.222 44.000 3.03 0.00 46.09 2.15
150 151 5.238583 CGGAATAGGTGGACCTTCATTATC 58.761 45.833 3.03 0.00 46.09 1.75
151 152 4.505039 GCGGAATAGGTGGACCTTCATTAT 60.505 45.833 3.03 0.00 46.09 1.28
152 153 3.181458 GCGGAATAGGTGGACCTTCATTA 60.181 47.826 3.03 0.00 46.09 1.90
153 154 2.421529 GCGGAATAGGTGGACCTTCATT 60.422 50.000 3.03 0.00 46.09 2.57
154 155 1.141053 GCGGAATAGGTGGACCTTCAT 59.859 52.381 3.03 0.00 46.09 2.57
155 156 0.539986 GCGGAATAGGTGGACCTTCA 59.460 55.000 3.03 0.00 46.09 3.02
156 157 0.529992 CGCGGAATAGGTGGACCTTC 60.530 60.000 3.03 0.00 46.09 3.46
157 158 1.520666 CGCGGAATAGGTGGACCTT 59.479 57.895 3.03 0.00 46.09 3.50
159 160 2.108362 CCGCGGAATAGGTGGACC 59.892 66.667 24.07 0.00 37.22 4.46
160 161 1.755393 ATCCCGCGGAATAGGTGGAC 61.755 60.000 30.73 0.00 37.22 4.02
161 162 0.178955 TATCCCGCGGAATAGGTGGA 60.179 55.000 30.73 13.36 37.22 4.02
162 163 0.037605 GTATCCCGCGGAATAGGTGG 60.038 60.000 30.73 7.15 34.34 4.61
163 164 0.677288 TGTATCCCGCGGAATAGGTG 59.323 55.000 30.73 8.04 34.34 4.00
164 165 1.640917 ATGTATCCCGCGGAATAGGT 58.359 50.000 30.73 8.72 34.34 3.08
165 166 5.723672 ATATATGTATCCCGCGGAATAGG 57.276 43.478 30.73 9.82 34.34 2.57
166 167 6.657966 TCCTATATATGTATCCCGCGGAATAG 59.342 42.308 30.73 10.28 34.34 1.73
167 168 6.545567 TCCTATATATGTATCCCGCGGAATA 58.454 40.000 30.73 15.32 34.34 1.75
168 169 5.391256 TCCTATATATGTATCCCGCGGAAT 58.609 41.667 30.73 16.80 34.34 3.01
169 170 4.795469 TCCTATATATGTATCCCGCGGAA 58.205 43.478 30.73 6.63 34.34 4.30
170 171 4.442401 TCCTATATATGTATCCCGCGGA 57.558 45.455 30.73 13.82 35.55 5.54
171 172 5.010933 AGATCCTATATATGTATCCCGCGG 58.989 45.833 21.04 21.04 0.00 6.46
172 173 5.705905 TCAGATCCTATATATGTATCCCGCG 59.294 44.000 0.00 0.00 0.00 6.46
173 174 7.363355 CCATCAGATCCTATATATGTATCCCGC 60.363 44.444 0.00 0.00 0.00 6.13
174 175 7.363355 GCCATCAGATCCTATATATGTATCCCG 60.363 44.444 0.00 0.00 0.00 5.14
175 176 7.677745 AGCCATCAGATCCTATATATGTATCCC 59.322 40.741 0.00 0.00 0.00 3.85
176 177 8.663209 AGCCATCAGATCCTATATATGTATCC 57.337 38.462 0.00 0.00 0.00 2.59
177 178 9.532494 AGAGCCATCAGATCCTATATATGTATC 57.468 37.037 0.00 0.00 0.00 2.24
178 179 9.895507 AAGAGCCATCAGATCCTATATATGTAT 57.104 33.333 0.00 0.00 0.00 2.29
179 180 9.140874 CAAGAGCCATCAGATCCTATATATGTA 57.859 37.037 0.00 0.00 0.00 2.29
180 181 7.622878 ACAAGAGCCATCAGATCCTATATATGT 59.377 37.037 0.00 0.00 0.00 2.29
181 182 8.020777 ACAAGAGCCATCAGATCCTATATATG 57.979 38.462 0.00 0.00 0.00 1.78
182 183 7.843252 TGACAAGAGCCATCAGATCCTATATAT 59.157 37.037 0.00 0.00 0.00 0.86
183 184 7.184862 TGACAAGAGCCATCAGATCCTATATA 58.815 38.462 0.00 0.00 0.00 0.86
184 185 6.021672 TGACAAGAGCCATCAGATCCTATAT 58.978 40.000 0.00 0.00 0.00 0.86
185 186 5.397360 TGACAAGAGCCATCAGATCCTATA 58.603 41.667 0.00 0.00 0.00 1.31
186 187 4.229639 TGACAAGAGCCATCAGATCCTAT 58.770 43.478 0.00 0.00 0.00 2.57
187 188 3.640498 CTGACAAGAGCCATCAGATCCTA 59.360 47.826 0.00 0.00 42.07 2.94
188 189 2.435069 CTGACAAGAGCCATCAGATCCT 59.565 50.000 0.00 0.00 42.07 3.24
189 190 2.433604 TCTGACAAGAGCCATCAGATCC 59.566 50.000 0.00 0.00 43.01 3.36
190 191 3.815856 TCTGACAAGAGCCATCAGATC 57.184 47.619 0.00 0.00 43.01 2.75
193 194 5.640189 AAAAATCTGACAAGAGCCATCAG 57.360 39.130 0.00 0.00 41.06 2.90
214 215 8.641499 CACTTAGTGTGCAAAAATAGGAAAAA 57.359 30.769 3.88 0.00 40.06 1.94
230 231 3.885297 ACTGCAATCAAAGCACTTAGTGT 59.115 39.130 14.23 0.00 37.02 3.55
231 232 4.494350 ACTGCAATCAAAGCACTTAGTG 57.506 40.909 8.18 8.18 37.02 2.74
232 233 5.284079 CAAACTGCAATCAAAGCACTTAGT 58.716 37.500 0.00 0.00 37.02 2.24
233 234 4.682860 CCAAACTGCAATCAAAGCACTTAG 59.317 41.667 0.00 0.00 37.02 2.18
234 235 4.619973 CCAAACTGCAATCAAAGCACTTA 58.380 39.130 0.00 0.00 37.02 2.24
235 236 3.460103 CCAAACTGCAATCAAAGCACTT 58.540 40.909 0.00 0.00 37.02 3.16
236 237 2.804212 GCCAAACTGCAATCAAAGCACT 60.804 45.455 0.00 0.00 37.02 4.40
237 238 1.528161 GCCAAACTGCAATCAAAGCAC 59.472 47.619 0.00 0.00 37.02 4.40
238 239 1.540797 GGCCAAACTGCAATCAAAGCA 60.541 47.619 0.00 0.00 40.19 3.91
239 240 1.150827 GGCCAAACTGCAATCAAAGC 58.849 50.000 0.00 0.00 0.00 3.51
240 241 1.269726 ACGGCCAAACTGCAATCAAAG 60.270 47.619 2.24 0.00 0.00 2.77
241 242 0.749649 ACGGCCAAACTGCAATCAAA 59.250 45.000 2.24 0.00 0.00 2.69
242 243 0.031857 CACGGCCAAACTGCAATCAA 59.968 50.000 2.24 0.00 0.00 2.57
243 244 1.106351 ACACGGCCAAACTGCAATCA 61.106 50.000 2.24 0.00 0.00 2.57
244 245 0.031994 AACACGGCCAAACTGCAATC 59.968 50.000 2.24 0.00 0.00 2.67
245 246 1.000717 GTAACACGGCCAAACTGCAAT 60.001 47.619 2.24 0.00 0.00 3.56
246 247 0.382515 GTAACACGGCCAAACTGCAA 59.617 50.000 2.24 0.00 0.00 4.08
247 248 0.748367 TGTAACACGGCCAAACTGCA 60.748 50.000 2.24 0.00 0.00 4.41
248 249 0.317519 GTGTAACACGGCCAAACTGC 60.318 55.000 2.24 0.00 36.32 4.40
249 250 0.309612 GGTGTAACACGGCCAAACTG 59.690 55.000 2.24 0.00 39.98 3.16
250 251 1.161563 CGGTGTAACACGGCCAAACT 61.162 55.000 2.24 0.00 39.98 2.66
251 252 1.280444 CGGTGTAACACGGCCAAAC 59.720 57.895 2.24 0.00 39.98 2.93
252 253 3.733806 CGGTGTAACACGGCCAAA 58.266 55.556 2.24 0.00 39.98 3.28
257 258 1.499949 CAATGGCGGTGTAACACGG 59.500 57.895 0.00 0.00 39.98 4.94
258 259 1.154301 GCAATGGCGGTGTAACACG 60.154 57.895 0.00 0.00 39.98 4.49
259 260 0.109781 CTGCAATGGCGGTGTAACAC 60.110 55.000 0.00 0.00 45.35 3.32
260 261 2.252556 CTGCAATGGCGGTGTAACA 58.747 52.632 0.00 0.00 45.35 2.41
268 269 3.818787 GAGGTGGCTGCAATGGCG 61.819 66.667 0.50 0.00 45.35 5.69
269 270 2.677524 TGAGGTGGCTGCAATGGC 60.678 61.111 0.50 0.00 41.68 4.40
270 271 0.968901 ATGTGAGGTGGCTGCAATGG 60.969 55.000 0.50 0.00 0.00 3.16
271 272 0.454600 GATGTGAGGTGGCTGCAATG 59.545 55.000 0.50 0.00 0.00 2.82
272 273 0.682209 GGATGTGAGGTGGCTGCAAT 60.682 55.000 0.50 0.00 0.00 3.56
273 274 1.303561 GGATGTGAGGTGGCTGCAA 60.304 57.895 0.50 0.00 0.00 4.08
274 275 2.352422 GGATGTGAGGTGGCTGCA 59.648 61.111 0.50 0.00 0.00 4.41
275 276 2.821366 CGGATGTGAGGTGGCTGC 60.821 66.667 0.00 0.00 0.00 5.25
276 277 2.821366 GCGGATGTGAGGTGGCTG 60.821 66.667 0.00 0.00 0.00 4.85
277 278 3.005539 AGCGGATGTGAGGTGGCT 61.006 61.111 0.00 0.00 0.00 4.75
278 279 2.821366 CAGCGGATGTGAGGTGGC 60.821 66.667 0.00 0.00 32.77 5.01
279 280 1.448540 GTCAGCGGATGTGAGGTGG 60.449 63.158 0.00 0.00 36.60 4.61
280 281 1.448540 GGTCAGCGGATGTGAGGTG 60.449 63.158 0.00 0.00 37.22 4.00
281 282 1.913262 TGGTCAGCGGATGTGAGGT 60.913 57.895 0.00 0.00 0.00 3.85
282 283 1.448540 GTGGTCAGCGGATGTGAGG 60.449 63.158 0.00 0.00 0.00 3.86
283 284 0.107993 ATGTGGTCAGCGGATGTGAG 60.108 55.000 0.00 0.00 0.00 3.51
284 285 0.108186 GATGTGGTCAGCGGATGTGA 60.108 55.000 0.00 0.00 0.00 3.58
285 286 1.091771 GGATGTGGTCAGCGGATGTG 61.092 60.000 0.00 0.00 0.00 3.21
286 287 1.221840 GGATGTGGTCAGCGGATGT 59.778 57.895 0.00 0.00 0.00 3.06
287 288 0.531532 GAGGATGTGGTCAGCGGATG 60.532 60.000 0.00 0.00 0.00 3.51
288 289 1.826024 GAGGATGTGGTCAGCGGAT 59.174 57.895 0.00 0.00 0.00 4.18
289 290 2.710902 CGAGGATGTGGTCAGCGGA 61.711 63.158 0.00 0.00 0.00 5.54
290 291 2.202797 CGAGGATGTGGTCAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
291 292 2.202797 CCGAGGATGTGGTCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
292 293 2.187946 CCCGAGGATGTGGTCAGC 59.812 66.667 0.00 0.00 0.00 4.26
293 294 2.735772 CCCCCGAGGATGTGGTCAG 61.736 68.421 0.00 0.00 38.24 3.51
294 295 2.687200 CCCCCGAGGATGTGGTCA 60.687 66.667 0.00 0.00 38.24 4.02
295 296 4.176752 GCCCCCGAGGATGTGGTC 62.177 72.222 0.00 0.00 38.24 4.02
298 299 4.530857 GACGCCCCCGAGGATGTG 62.531 72.222 0.00 0.00 38.24 3.21
300 301 4.530857 GTGACGCCCCCGAGGATG 62.531 72.222 0.00 0.00 38.24 3.51
310 311 1.666872 GTGTACACTGGGTGACGCC 60.667 63.158 18.92 0.00 36.96 5.68
311 312 1.666872 GGTGTACACTGGGTGACGC 60.667 63.158 24.55 1.79 36.96 5.19
312 313 0.599204 GTGGTGTACACTGGGTGACG 60.599 60.000 24.55 0.00 46.72 4.35
313 314 3.300711 GTGGTGTACACTGGGTGAC 57.699 57.895 24.55 7.52 46.72 3.67
315 316 3.320300 GAGGGTGGTGTACACTGGGTG 62.320 61.905 24.55 0.00 45.06 4.61
316 317 1.125711 GAGGGTGGTGTACACTGGGT 61.126 60.000 24.55 7.00 45.06 4.51
317 318 1.125093 TGAGGGTGGTGTACACTGGG 61.125 60.000 24.55 0.00 45.06 4.45
318 319 0.984230 ATGAGGGTGGTGTACACTGG 59.016 55.000 24.55 0.00 45.06 4.00
319 320 1.945819 GCATGAGGGTGGTGTACACTG 60.946 57.143 24.55 13.54 45.06 3.66
322 323 0.840288 AGGCATGAGGGTGGTGTACA 60.840 55.000 0.00 0.00 0.00 2.90
323 324 0.328258 AAGGCATGAGGGTGGTGTAC 59.672 55.000 0.00 0.00 0.00 2.90
324 325 0.618458 GAAGGCATGAGGGTGGTGTA 59.382 55.000 0.00 0.00 0.00 2.90
325 326 1.380302 GAAGGCATGAGGGTGGTGT 59.620 57.895 0.00 0.00 0.00 4.16
326 327 1.746615 CGAAGGCATGAGGGTGGTG 60.747 63.158 0.00 0.00 0.00 4.17
327 328 2.671070 CGAAGGCATGAGGGTGGT 59.329 61.111 0.00 0.00 0.00 4.16
328 329 2.825836 GCGAAGGCATGAGGGTGG 60.826 66.667 0.00 0.00 39.62 4.61
329 330 2.046023 TGCGAAGGCATGAGGGTG 60.046 61.111 0.00 0.00 46.21 4.61
338 339 0.880278 TGACAGTTGTCTGCGAAGGC 60.880 55.000 12.97 0.00 44.77 4.35
339 340 0.861837 GTGACAGTTGTCTGCGAAGG 59.138 55.000 12.97 0.00 44.77 3.46
340 341 0.504384 CGTGACAGTTGTCTGCGAAG 59.496 55.000 17.88 0.00 44.77 3.79
341 342 0.179121 ACGTGACAGTTGTCTGCGAA 60.179 50.000 24.53 2.20 44.77 4.70
342 343 0.594028 GACGTGACAGTTGTCTGCGA 60.594 55.000 24.53 2.50 44.77 5.10
343 344 1.846648 GACGTGACAGTTGTCTGCG 59.153 57.895 19.72 19.72 44.77 5.18
344 345 1.846648 CGACGTGACAGTTGTCTGC 59.153 57.895 12.97 5.79 44.77 4.26
345 346 0.869880 TGCGACGTGACAGTTGTCTG 60.870 55.000 12.97 8.27 44.99 3.51
346 347 0.032130 ATGCGACGTGACAGTTGTCT 59.968 50.000 12.97 0.00 44.99 3.41
347 348 0.161658 CATGCGACGTGACAGTTGTC 59.838 55.000 0.00 5.33 44.97 3.18
348 349 0.529773 ACATGCGACGTGACAGTTGT 60.530 50.000 0.00 0.00 0.00 3.32
349 350 0.111134 CACATGCGACGTGACAGTTG 60.111 55.000 0.00 0.00 36.43 3.16
350 351 1.221466 CCACATGCGACGTGACAGTT 61.221 55.000 0.00 0.00 36.43 3.16
351 352 1.664649 CCACATGCGACGTGACAGT 60.665 57.895 0.00 0.00 36.43 3.55
352 353 3.015293 GCCACATGCGACGTGACAG 62.015 63.158 0.00 0.00 36.43 3.51
353 354 3.041351 GCCACATGCGACGTGACA 61.041 61.111 0.00 0.00 36.43 3.58
354 355 3.788766 GGCCACATGCGACGTGAC 61.789 66.667 0.00 0.00 42.61 3.67
355 356 4.002506 AGGCCACATGCGACGTGA 62.003 61.111 5.01 0.00 42.61 4.35
356 357 3.792047 CAGGCCACATGCGACGTG 61.792 66.667 5.01 0.00 42.61 4.49
359 360 4.107051 GTGCAGGCCACATGCGAC 62.107 66.667 5.01 4.01 46.87 5.19
363 364 3.434319 GACCGTGCAGGCCACATG 61.434 66.667 5.01 8.38 44.91 3.21
364 365 4.722700 GGACCGTGCAGGCCACAT 62.723 66.667 5.01 0.00 44.91 3.21
385 386 3.078097 CCATGGTCGTGTTTATCCAACA 58.922 45.455 2.57 0.00 43.55 3.33
386 387 3.078837 ACCATGGTCGTGTTTATCCAAC 58.921 45.455 13.00 0.00 33.55 3.77
387 388 3.426787 ACCATGGTCGTGTTTATCCAA 57.573 42.857 13.00 0.00 33.55 3.53
388 389 4.162509 TGATACCATGGTCGTGTTTATCCA 59.837 41.667 23.76 0.00 0.00 3.41
389 390 4.510340 GTGATACCATGGTCGTGTTTATCC 59.490 45.833 23.76 7.36 0.00 2.59
390 391 5.113383 TGTGATACCATGGTCGTGTTTATC 58.887 41.667 23.76 16.95 0.00 1.75
391 392 5.092554 TGTGATACCATGGTCGTGTTTAT 57.907 39.130 23.76 7.29 0.00 1.40
392 393 4.500127 CTGTGATACCATGGTCGTGTTTA 58.500 43.478 23.76 1.25 0.00 2.01
393 394 3.334691 CTGTGATACCATGGTCGTGTTT 58.665 45.455 23.76 0.00 0.00 2.83
394 395 2.935238 GCTGTGATACCATGGTCGTGTT 60.935 50.000 23.76 2.00 0.00 3.32
395 396 1.405526 GCTGTGATACCATGGTCGTGT 60.406 52.381 23.76 6.16 0.00 4.49
396 397 1.290203 GCTGTGATACCATGGTCGTG 58.710 55.000 23.76 8.16 0.00 4.35
397 398 0.179111 CGCTGTGATACCATGGTCGT 60.179 55.000 23.76 11.95 0.00 4.34
398 399 0.875908 CCGCTGTGATACCATGGTCG 60.876 60.000 23.76 16.56 0.00 4.79
399 400 0.178068 ACCGCTGTGATACCATGGTC 59.822 55.000 23.76 8.88 0.00 4.02
400 401 1.491668 TACCGCTGTGATACCATGGT 58.508 50.000 23.55 23.55 0.00 3.55
401 402 2.210116 GTTACCGCTGTGATACCATGG 58.790 52.381 11.19 11.19 0.00 3.66
402 403 2.899976 TGTTACCGCTGTGATACCATG 58.100 47.619 0.00 0.00 0.00 3.66
403 404 3.267483 GTTGTTACCGCTGTGATACCAT 58.733 45.455 0.00 0.00 0.00 3.55
404 405 2.613474 GGTTGTTACCGCTGTGATACCA 60.613 50.000 0.00 0.00 34.01 3.25
405 406 2.004733 GGTTGTTACCGCTGTGATACC 58.995 52.381 0.00 0.00 34.01 2.73
416 417 4.743644 CGATTAATCTCCGAGGTTGTTACC 59.256 45.833 13.45 0.00 45.39 2.85
417 418 5.346522 ACGATTAATCTCCGAGGTTGTTAC 58.653 41.667 13.45 0.00 0.00 2.50
418 419 5.359009 AGACGATTAATCTCCGAGGTTGTTA 59.641 40.000 13.45 0.00 0.00 2.41
441 442 5.230942 AGTTTATCCTTGACGTGTTGAGAG 58.769 41.667 0.00 0.00 0.00 3.20
446 447 6.698380 AGATGTAGTTTATCCTTGACGTGTT 58.302 36.000 0.00 0.00 0.00 3.32
452 453 9.297037 TCGATATGAGATGTAGTTTATCCTTGA 57.703 33.333 0.00 0.00 0.00 3.02
456 457 8.470805 ACCATCGATATGAGATGTAGTTTATCC 58.529 37.037 0.00 0.00 42.78 2.59
462 463 6.260870 GACACCATCGATATGAGATGTAGT 57.739 41.667 14.14 11.60 42.78 2.73
519 520 0.321298 GCTTGTCGTAAAGGAGGGCA 60.321 55.000 0.00 0.00 0.00 5.36
521 522 2.474410 AAGCTTGTCGTAAAGGAGGG 57.526 50.000 0.00 0.00 0.00 4.30
594 611 1.162698 TCTTCTACCTCACACGACGG 58.837 55.000 0.00 0.00 0.00 4.79
631 648 1.688735 TGGATCAATCGACCTGGCTAG 59.311 52.381 0.00 0.00 0.00 3.42
634 651 1.517242 GATGGATCAATCGACCTGGC 58.483 55.000 0.00 0.00 0.00 4.85
700 725 1.362355 CGTGAAAAAGGCACCCACC 59.638 57.895 0.00 0.00 32.74 4.61
701 726 0.458260 AACGTGAAAAAGGCACCCAC 59.542 50.000 0.00 0.00 32.74 4.61
796 826 3.537506 TGGAGGTGGAGGTGGGGA 61.538 66.667 0.00 0.00 0.00 4.81
799 829 3.330720 GGGTGGAGGTGGAGGTGG 61.331 72.222 0.00 0.00 0.00 4.61
1992 2089 3.357079 GTGTCCAGGGCAACGCTG 61.357 66.667 0.00 4.78 42.81 5.18
2433 2530 2.746277 GGAAGGTGCACGGCGATT 60.746 61.111 16.62 0.08 0.00 3.34
2643 2740 1.226407 CTCGATCTTGCTCGCGACA 60.226 57.895 3.71 5.94 38.52 4.35
2940 3040 2.028385 ACCTACCGACTTGTGTTCATCC 60.028 50.000 0.00 0.00 0.00 3.51
3196 3303 9.770097 CAGAGAACCAATAGCAAGATAAATAGA 57.230 33.333 0.00 0.00 0.00 1.98
3198 3305 9.905713 AACAGAGAACCAATAGCAAGATAAATA 57.094 29.630 0.00 0.00 0.00 1.40
3248 3364 7.114754 TCTAGTTCTACCTCCGTCTCAAAATA 58.885 38.462 0.00 0.00 0.00 1.40
3291 3407 5.824624 AGGATGCAAGGTTATGAGTGTTATG 59.175 40.000 0.00 0.00 0.00 1.90
3326 3445 6.220726 TCTAAAGCAGGCAAGTTTTTCTTT 57.779 33.333 0.00 0.00 33.63 2.52
3335 3454 4.518211 CCATAATCCTCTAAAGCAGGCAAG 59.482 45.833 0.00 0.00 0.00 4.01
3336 3455 4.079787 ACCATAATCCTCTAAAGCAGGCAA 60.080 41.667 0.00 0.00 0.00 4.52
3337 3456 3.459598 ACCATAATCCTCTAAAGCAGGCA 59.540 43.478 0.00 0.00 0.00 4.75
3338 3457 3.817647 CACCATAATCCTCTAAAGCAGGC 59.182 47.826 0.00 0.00 0.00 4.85
3339 3458 4.392940 CCACCATAATCCTCTAAAGCAGG 58.607 47.826 0.00 0.00 0.00 4.85
3340 3459 3.817647 GCCACCATAATCCTCTAAAGCAG 59.182 47.826 0.00 0.00 0.00 4.24
3341 3460 3.435026 GGCCACCATAATCCTCTAAAGCA 60.435 47.826 0.00 0.00 0.00 3.91
3342 3461 3.149981 GGCCACCATAATCCTCTAAAGC 58.850 50.000 0.00 0.00 0.00 3.51
3343 3462 4.437682 TGGCCACCATAATCCTCTAAAG 57.562 45.455 0.00 0.00 0.00 1.85
3344 3463 5.402054 AATGGCCACCATAATCCTCTAAA 57.598 39.130 8.16 0.00 44.40 1.85
3345 3464 6.576244 CGATAATGGCCACCATAATCCTCTAA 60.576 42.308 8.16 0.00 44.40 2.10
3360 3479 5.882557 AGATTATGGACAATCGATAATGGCC 59.117 40.000 14.18 14.18 45.54 5.36
3369 3488 7.488187 AGAACATGAAGATTATGGACAATCG 57.512 36.000 0.00 0.00 39.45 3.34
3370 3489 7.439356 TCGAGAACATGAAGATTATGGACAATC 59.561 37.037 0.00 0.00 35.53 2.67
3377 3496 7.637229 AGCATTTCGAGAACATGAAGATTATG 58.363 34.615 0.00 0.00 0.00 1.90
3387 3506 5.762825 ATATGCAAGCATTTCGAGAACAT 57.237 34.783 13.32 0.00 37.82 2.71
3406 3525 5.957771 TGCCTCCTTTCACAGAAGTATAT 57.042 39.130 0.00 0.00 0.00 0.86
3445 3564 9.236006 AGCTGAATATTATTATTTCCTCGCAAT 57.764 29.630 0.00 0.00 0.00 3.56
3516 3635 5.397142 AAGATTTGATTGCCTTGGTCTTC 57.603 39.130 0.00 0.00 0.00 2.87
3521 3640 3.118884 CCTGGAAGATTTGATTGCCTTGG 60.119 47.826 0.00 0.00 34.07 3.61
3529 3648 2.487986 GGCGGATCCTGGAAGATTTGAT 60.488 50.000 10.75 0.00 34.07 2.57
3571 3694 9.889128 TCTTTGATTCAAGTTCAAGGAATTTTT 57.111 25.926 0.00 0.00 36.59 1.94
3575 3698 7.830099 ACTCTTTGATTCAAGTTCAAGGAAT 57.170 32.000 0.00 0.00 38.31 3.01
3578 3701 7.269477 AGAACTCTTTGATTCAAGTTCAAGG 57.731 36.000 22.51 7.01 46.38 3.61
3716 3843 7.486647 CCTGCTAGCTTGTAATTCAATGAAAT 58.513 34.615 17.23 0.00 35.35 2.17
3795 3927 7.772332 AGAAAATACCTTCATTGCTAGTACG 57.228 36.000 0.00 0.00 0.00 3.67
3865 3997 7.137490 TCAGAGAAAATGATACACTGCAAAG 57.863 36.000 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.