Multiple sequence alignment - TraesCS4D01G360100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G360100 chr4D 100.000 2444 0 0 1 2444 507165068 507162625 0.000000e+00 4514.0
1 TraesCS4D01G360100 chr4D 91.304 138 7 2 448 582 398050281 398050146 1.490000e-42 183.0
2 TraesCS4D01G360100 chr4D 93.805 113 2 5 260 371 494801401 494801293 5.410000e-37 165.0
3 TraesCS4D01G360100 chr4B 91.569 1198 64 16 583 1753 654440368 654441555 0.000000e+00 1618.0
4 TraesCS4D01G360100 chr4B 88.113 673 64 7 1776 2444 654441544 654442204 0.000000e+00 785.0
5 TraesCS4D01G360100 chr4B 90.580 138 8 2 448 582 209311321 209311456 6.940000e-41 178.0
6 TraesCS4D01G360100 chr5A 90.023 1293 62 33 694 1953 691976529 691977787 0.000000e+00 1611.0
7 TraesCS4D01G360100 chrUn 91.304 138 7 2 448 582 403078173 403078038 1.490000e-42 183.0
8 TraesCS4D01G360100 chr7D 91.304 138 7 2 448 582 381946485 381946350 1.490000e-42 183.0
9 TraesCS4D01G360100 chr7D 82.759 145 22 3 71 213 427344674 427344531 2.550000e-25 126.0
10 TraesCS4D01G360100 chr7A 91.304 138 7 2 448 582 4948401 4948536 1.490000e-42 183.0
11 TraesCS4D01G360100 chr6B 91.304 138 7 2 448 582 388165768 388165633 1.490000e-42 183.0
12 TraesCS4D01G360100 chr3D 91.304 138 7 2 448 582 602853874 602853739 1.490000e-42 183.0
13 TraesCS4D01G360100 chr3D 92.241 116 6 3 256 371 142072958 142073070 6.990000e-36 161.0
14 TraesCS4D01G360100 chr3D 90.833 120 8 3 256 375 137515094 137515210 9.050000e-35 158.0
15 TraesCS4D01G360100 chr2B 91.304 138 7 2 448 582 112852884 112853019 1.490000e-42 183.0
16 TraesCS4D01G360100 chr2B 96.078 102 4 0 286 387 653585433 653585332 1.500000e-37 167.0
17 TraesCS4D01G360100 chr2B 82.203 118 11 6 8 122 22723121 22723011 2.590000e-15 93.5
18 TraesCS4D01G360100 chr2B 100.000 29 0 0 1282 1310 22369346 22369318 1.000000e-03 54.7
19 TraesCS4D01G360100 chr6A 90.580 138 8 2 448 582 561399872 561399737 6.940000e-41 178.0
20 TraesCS4D01G360100 chr2D 97.030 101 1 2 279 378 206682963 206683062 4.180000e-38 169.0
21 TraesCS4D01G360100 chr7B 90.833 120 8 3 256 375 153939322 153939438 9.050000e-35 158.0
22 TraesCS4D01G360100 chr1D 91.453 117 7 3 255 371 295609098 295608985 9.050000e-35 158.0
23 TraesCS4D01G360100 chr1B 91.453 117 7 3 255 371 367144062 367144175 9.050000e-35 158.0
24 TraesCS4D01G360100 chr6D 91.379 116 7 3 256 371 140998229 140998117 3.250000e-34 156.0
25 TraesCS4D01G360100 chr6D 83.221 149 19 4 67 213 390873522 390873378 5.480000e-27 132.0
26 TraesCS4D01G360100 chr5D 83.221 149 22 2 67 213 80034118 80034265 1.520000e-27 134.0
27 TraesCS4D01G360100 chr4A 100.000 30 0 0 1281 1310 426205849 426205878 3.390000e-04 56.5
28 TraesCS4D01G360100 chr4A 100.000 30 0 0 1281 1310 561356887 561356916 3.390000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G360100 chr4D 507162625 507165068 2443 True 4514.0 4514 100.000 1 2444 1 chr4D.!!$R3 2443
1 TraesCS4D01G360100 chr4B 654440368 654442204 1836 False 1201.5 1618 89.841 583 2444 2 chr4B.!!$F2 1861
2 TraesCS4D01G360100 chr5A 691976529 691977787 1258 False 1611.0 1611 90.023 694 1953 1 chr5A.!!$F1 1259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.030638 CAAAACACCGTCAGGCCAAG 59.969 55.0 5.01 0.0 42.76 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2013 0.106819 ATCTTCTGCAGGACATGGGC 60.107 55.0 15.13 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.752005 TGCATAGAAGCATTTCCTACTTATTT 57.248 30.769 0.00 0.00 40.11 1.40
35 36 8.840321 TGCATAGAAGCATTTCCTACTTATTTC 58.160 33.333 0.00 0.00 40.11 2.17
36 37 9.061435 GCATAGAAGCATTTCCTACTTATTTCT 57.939 33.333 0.00 0.00 33.64 2.52
40 41 9.520515 AGAAGCATTTCCTACTTATTTCTCAAA 57.479 29.630 0.00 0.00 33.64 2.69
43 44 9.301897 AGCATTTCCTACTTATTTCTCAAAAGT 57.698 29.630 0.00 0.00 37.27 2.66
48 49 8.773404 TCCTACTTATTTCTCAAAAGTAGTGC 57.227 34.615 16.19 0.00 45.81 4.40
49 50 7.544566 TCCTACTTATTTCTCAAAAGTAGTGCG 59.455 37.037 16.19 5.71 45.81 5.34
50 51 5.928153 ACTTATTTCTCAAAAGTAGTGCGC 58.072 37.500 0.00 0.00 31.84 6.09
51 52 5.701290 ACTTATTTCTCAAAAGTAGTGCGCT 59.299 36.000 9.73 4.58 31.84 5.92
52 53 3.878086 TTTCTCAAAAGTAGTGCGCTG 57.122 42.857 10.80 0.00 0.00 5.18
53 54 2.526304 TCTCAAAAGTAGTGCGCTGT 57.474 45.000 10.80 0.00 0.00 4.40
54 55 3.653539 TCTCAAAAGTAGTGCGCTGTA 57.346 42.857 10.80 0.00 0.00 2.74
55 56 3.985008 TCTCAAAAGTAGTGCGCTGTAA 58.015 40.909 10.80 0.00 0.00 2.41
56 57 4.373527 TCTCAAAAGTAGTGCGCTGTAAA 58.626 39.130 10.80 0.00 0.00 2.01
57 58 4.812091 TCTCAAAAGTAGTGCGCTGTAAAA 59.188 37.500 10.80 0.00 0.00 1.52
58 59 5.294799 TCTCAAAAGTAGTGCGCTGTAAAAA 59.705 36.000 10.80 0.00 0.00 1.94
96 97 4.526970 CAATATTGCTGGTCGTTGAGAG 57.473 45.455 1.74 0.00 0.00 3.20
97 98 4.183865 CAATATTGCTGGTCGTTGAGAGA 58.816 43.478 1.74 0.00 0.00 3.10
98 99 2.839486 ATTGCTGGTCGTTGAGAGAA 57.161 45.000 0.00 0.00 0.00 2.87
99 100 2.613026 TTGCTGGTCGTTGAGAGAAA 57.387 45.000 0.00 0.00 0.00 2.52
100 101 2.839486 TGCTGGTCGTTGAGAGAAAT 57.161 45.000 0.00 0.00 0.00 2.17
101 102 3.953712 TGCTGGTCGTTGAGAGAAATA 57.046 42.857 0.00 0.00 0.00 1.40
102 103 4.471904 TGCTGGTCGTTGAGAGAAATAT 57.528 40.909 0.00 0.00 0.00 1.28
103 104 4.832248 TGCTGGTCGTTGAGAGAAATATT 58.168 39.130 0.00 0.00 0.00 1.28
104 105 4.870426 TGCTGGTCGTTGAGAGAAATATTC 59.130 41.667 0.00 0.00 0.00 1.75
105 106 4.870426 GCTGGTCGTTGAGAGAAATATTCA 59.130 41.667 0.00 0.00 0.00 2.57
106 107 5.351465 GCTGGTCGTTGAGAGAAATATTCAA 59.649 40.000 0.00 0.00 0.00 2.69
107 108 6.128282 GCTGGTCGTTGAGAGAAATATTCAAA 60.128 38.462 0.00 0.00 33.10 2.69
108 109 7.129109 TGGTCGTTGAGAGAAATATTCAAAC 57.871 36.000 0.00 0.00 33.10 2.93
109 110 6.708502 TGGTCGTTGAGAGAAATATTCAAACA 59.291 34.615 0.00 0.00 33.10 2.83
110 111 7.227711 TGGTCGTTGAGAGAAATATTCAAACAA 59.772 33.333 0.00 0.00 33.10 2.83
111 112 7.534239 GGTCGTTGAGAGAAATATTCAAACAAC 59.466 37.037 0.00 0.00 36.11 3.32
112 113 7.534239 GTCGTTGAGAGAAATATTCAAACAACC 59.466 37.037 0.00 0.00 36.09 3.77
113 114 7.227711 TCGTTGAGAGAAATATTCAAACAACCA 59.772 33.333 0.00 0.00 36.09 3.67
114 115 7.535258 CGTTGAGAGAAATATTCAAACAACCAG 59.465 37.037 0.00 0.00 36.09 4.00
115 116 8.352942 GTTGAGAGAAATATTCAAACAACCAGT 58.647 33.333 0.00 0.00 34.86 4.00
116 117 9.567776 TTGAGAGAAATATTCAAACAACCAGTA 57.432 29.630 0.00 0.00 0.00 2.74
117 118 9.219603 TGAGAGAAATATTCAAACAACCAGTAG 57.780 33.333 0.00 0.00 0.00 2.57
118 119 9.436957 GAGAGAAATATTCAAACAACCAGTAGA 57.563 33.333 0.00 0.00 0.00 2.59
119 120 9.793259 AGAGAAATATTCAAACAACCAGTAGAA 57.207 29.630 0.00 0.00 0.00 2.10
178 179 9.691362 ACATGATGTTAAGTTATTCAAAACACC 57.309 29.630 0.00 0.00 33.27 4.16
179 180 8.849490 CATGATGTTAAGTTATTCAAAACACCG 58.151 33.333 0.00 0.00 33.27 4.94
180 181 7.932335 TGATGTTAAGTTATTCAAAACACCGT 58.068 30.769 0.00 0.00 33.27 4.83
181 182 8.071368 TGATGTTAAGTTATTCAAAACACCGTC 58.929 33.333 0.00 0.00 33.27 4.79
182 183 7.317842 TGTTAAGTTATTCAAAACACCGTCA 57.682 32.000 0.00 0.00 0.00 4.35
183 184 7.411274 TGTTAAGTTATTCAAAACACCGTCAG 58.589 34.615 0.00 0.00 0.00 3.51
184 185 5.432885 AAGTTATTCAAAACACCGTCAGG 57.567 39.130 0.00 0.00 45.13 3.86
185 186 3.252458 AGTTATTCAAAACACCGTCAGGC 59.748 43.478 0.00 0.00 42.76 4.85
186 187 0.958822 ATTCAAAACACCGTCAGGCC 59.041 50.000 0.00 0.00 42.76 5.19
187 188 0.394488 TTCAAAACACCGTCAGGCCA 60.394 50.000 5.01 0.00 42.76 5.36
188 189 0.394488 TCAAAACACCGTCAGGCCAA 60.394 50.000 5.01 0.00 42.76 4.52
189 190 0.030638 CAAAACACCGTCAGGCCAAG 59.969 55.000 5.01 0.00 42.76 3.61
190 191 1.106944 AAAACACCGTCAGGCCAAGG 61.107 55.000 5.01 4.72 42.76 3.61
191 192 1.990160 AAACACCGTCAGGCCAAGGA 61.990 55.000 5.01 0.00 42.76 3.36
192 193 2.358737 CACCGTCAGGCCAAGGAC 60.359 66.667 5.01 8.92 42.76 3.85
193 194 2.847234 ACCGTCAGGCCAAGGACA 60.847 61.111 18.51 0.00 42.76 4.02
194 195 2.358737 CCGTCAGGCCAAGGACAC 60.359 66.667 18.51 0.60 33.66 3.67
195 196 2.425592 CGTCAGGCCAAGGACACA 59.574 61.111 18.51 0.00 33.66 3.72
196 197 1.961277 CGTCAGGCCAAGGACACAC 60.961 63.158 18.51 0.00 33.66 3.82
197 198 1.600916 GTCAGGCCAAGGACACACC 60.601 63.158 5.01 0.00 39.35 4.16
198 199 2.075566 TCAGGCCAAGGACACACCA 61.076 57.895 5.01 0.00 42.04 4.17
199 200 1.152777 CAGGCCAAGGACACACCAA 60.153 57.895 5.01 0.00 42.04 3.67
200 201 0.540365 CAGGCCAAGGACACACCAAT 60.540 55.000 5.01 0.00 42.04 3.16
201 202 0.540365 AGGCCAAGGACACACCAATG 60.540 55.000 5.01 0.00 42.04 2.82
202 203 0.539438 GGCCAAGGACACACCAATGA 60.539 55.000 0.00 0.00 42.04 2.57
203 204 1.327303 GCCAAGGACACACCAATGAA 58.673 50.000 0.00 0.00 42.04 2.57
204 205 1.686052 GCCAAGGACACACCAATGAAA 59.314 47.619 0.00 0.00 42.04 2.69
205 206 2.299867 GCCAAGGACACACCAATGAAAT 59.700 45.455 0.00 0.00 42.04 2.17
206 207 3.509575 GCCAAGGACACACCAATGAAATA 59.490 43.478 0.00 0.00 42.04 1.40
207 208 4.380867 GCCAAGGACACACCAATGAAATAG 60.381 45.833 0.00 0.00 42.04 1.73
208 209 5.009631 CCAAGGACACACCAATGAAATAGA 58.990 41.667 0.00 0.00 42.04 1.98
209 210 5.653769 CCAAGGACACACCAATGAAATAGAT 59.346 40.000 0.00 0.00 42.04 1.98
210 211 6.153340 CCAAGGACACACCAATGAAATAGATT 59.847 38.462 0.00 0.00 42.04 2.40
211 212 7.309990 CCAAGGACACACCAATGAAATAGATTT 60.310 37.037 0.00 0.00 42.04 2.17
212 213 7.781324 AGGACACACCAATGAAATAGATTTT 57.219 32.000 0.00 0.00 42.04 1.82
213 214 7.830739 AGGACACACCAATGAAATAGATTTTC 58.169 34.615 0.00 0.00 42.04 2.29
214 215 7.451255 AGGACACACCAATGAAATAGATTTTCA 59.549 33.333 3.50 3.50 40.66 2.69
215 216 7.542130 GGACACACCAATGAAATAGATTTTCAC 59.458 37.037 3.11 0.00 38.61 3.18
216 217 7.950512 ACACACCAATGAAATAGATTTTCACA 58.049 30.769 3.11 0.00 40.70 3.58
217 218 8.420222 ACACACCAATGAAATAGATTTTCACAA 58.580 29.630 3.11 0.00 40.70 3.33
218 219 9.258826 CACACCAATGAAATAGATTTTCACAAA 57.741 29.630 3.11 0.00 40.70 2.83
219 220 9.829507 ACACCAATGAAATAGATTTTCACAAAA 57.170 25.926 3.11 0.00 40.70 2.44
263 264 8.243289 ACACAAAATAATCTAATGTGCAAAGC 57.757 30.769 4.27 0.00 43.89 3.51
264 265 7.871973 ACACAAAATAATCTAATGTGCAAAGCA 59.128 29.630 4.27 0.00 43.89 3.91
276 277 2.672714 TGCAAAGCACGTACTAGACTG 58.327 47.619 0.00 0.00 31.71 3.51
277 278 1.390463 GCAAAGCACGTACTAGACTGC 59.610 52.381 0.00 3.31 34.36 4.40
278 279 2.927014 GCAAAGCACGTACTAGACTGCT 60.927 50.000 0.00 5.36 41.43 4.24
279 280 3.672511 GCAAAGCACGTACTAGACTGCTA 60.673 47.826 0.00 0.00 39.87 3.49
280 281 7.827687 TGCAAAGCACGTACTAGACTGCTAG 62.828 48.000 0.00 0.00 39.87 3.42
292 293 4.799715 AGACTGCTAGTATGTACTCCCT 57.200 45.455 0.00 0.00 37.73 4.20
293 294 4.721132 AGACTGCTAGTATGTACTCCCTC 58.279 47.826 0.00 0.00 37.73 4.30
294 295 3.822167 GACTGCTAGTATGTACTCCCTCC 59.178 52.174 0.00 0.00 37.73 4.30
295 296 2.814919 CTGCTAGTATGTACTCCCTCCG 59.185 54.545 0.00 0.00 37.73 4.63
296 297 2.174210 TGCTAGTATGTACTCCCTCCGT 59.826 50.000 0.00 0.00 37.73 4.69
297 298 3.220940 GCTAGTATGTACTCCCTCCGTT 58.779 50.000 0.00 0.00 37.73 4.44
298 299 3.252944 GCTAGTATGTACTCCCTCCGTTC 59.747 52.174 0.00 0.00 37.73 3.95
299 300 2.664015 AGTATGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
300 301 2.024655 AGTATGTACTCCCTCCGTTCCA 60.025 50.000 0.00 0.00 0.00 3.53
301 302 1.946984 ATGTACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
302 303 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
303 304 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
304 305 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
305 306 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
306 307 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
307 308 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
308 309 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
309 310 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
310 311 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
311 312 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
312 313 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
313 314 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
314 315 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
315 316 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
316 317 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
317 318 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
318 319 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
319 320 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
320 321 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
321 322 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
322 323 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
323 324 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
324 325 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
325 326 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
326 327 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
327 328 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
328 329 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
329 330 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
330 331 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
331 332 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
332 333 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
333 334 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
346 347 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
347 348 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
348 349 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
349 350 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
350 351 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
351 352 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
352 353 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
353 354 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
354 355 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
355 356 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
356 357 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
357 358 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
358 359 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
359 360 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
360 361 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
361 362 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
362 363 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
363 364 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
364 365 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
365 366 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
366 367 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
367 368 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
368 369 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
369 370 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
370 371 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
371 372 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
372 373 5.901276 AGTAATTTGGAACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
373 374 5.906772 AATTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
374 375 7.731688 AGTAATTTGGAACGGAGGGAGTATATA 59.268 37.037 0.00 0.00 0.00 0.86
375 376 7.569599 AATTTGGAACGGAGGGAGTATATAT 57.430 36.000 0.00 0.00 0.00 0.86
376 377 5.995565 TTGGAACGGAGGGAGTATATATG 57.004 43.478 0.00 0.00 0.00 1.78
377 378 5.006896 TGGAACGGAGGGAGTATATATGT 57.993 43.478 0.00 0.00 0.00 2.29
378 379 4.770531 TGGAACGGAGGGAGTATATATGTG 59.229 45.833 0.00 0.00 0.00 3.21
379 380 4.381718 GGAACGGAGGGAGTATATATGTGC 60.382 50.000 0.00 0.00 0.00 4.57
380 381 3.774734 ACGGAGGGAGTATATATGTGCA 58.225 45.455 0.00 0.00 0.00 4.57
381 382 4.157246 ACGGAGGGAGTATATATGTGCAA 58.843 43.478 0.00 0.00 0.00 4.08
382 383 4.021368 ACGGAGGGAGTATATATGTGCAAC 60.021 45.833 0.00 0.00 37.35 4.17
383 384 4.220821 CGGAGGGAGTATATATGTGCAACT 59.779 45.833 0.00 0.00 38.04 3.16
384 385 5.622460 CGGAGGGAGTATATATGTGCAACTC 60.622 48.000 4.23 4.23 38.04 3.01
385 386 5.482175 GGAGGGAGTATATATGTGCAACTCT 59.518 44.000 11.20 0.00 37.36 3.24
386 387 6.352016 AGGGAGTATATATGTGCAACTCTG 57.648 41.667 11.20 0.00 37.36 3.35
399 400 2.819115 CAACTCTGCATACGATCAGCT 58.181 47.619 0.00 0.00 0.00 4.24
400 401 2.791383 ACTCTGCATACGATCAGCTC 57.209 50.000 0.00 0.00 0.00 4.09
401 402 2.027385 ACTCTGCATACGATCAGCTCA 58.973 47.619 0.00 0.00 0.00 4.26
402 403 2.223688 ACTCTGCATACGATCAGCTCAC 60.224 50.000 0.00 0.00 0.00 3.51
403 404 1.067669 TCTGCATACGATCAGCTCACC 59.932 52.381 0.00 0.00 0.00 4.02
404 405 0.823460 TGCATACGATCAGCTCACCA 59.177 50.000 0.00 0.00 0.00 4.17
405 406 1.413812 TGCATACGATCAGCTCACCAT 59.586 47.619 0.00 0.00 0.00 3.55
406 407 2.158914 TGCATACGATCAGCTCACCATT 60.159 45.455 0.00 0.00 0.00 3.16
407 408 2.874701 GCATACGATCAGCTCACCATTT 59.125 45.455 0.00 0.00 0.00 2.32
408 409 3.059325 GCATACGATCAGCTCACCATTTC 60.059 47.826 0.00 0.00 0.00 2.17
409 410 2.768253 ACGATCAGCTCACCATTTCA 57.232 45.000 0.00 0.00 0.00 2.69
410 411 2.625737 ACGATCAGCTCACCATTTCAG 58.374 47.619 0.00 0.00 0.00 3.02
411 412 2.027745 ACGATCAGCTCACCATTTCAGT 60.028 45.455 0.00 0.00 0.00 3.41
412 413 2.350804 CGATCAGCTCACCATTTCAGTG 59.649 50.000 0.00 0.00 36.54 3.66
413 414 1.527034 TCAGCTCACCATTTCAGTGC 58.473 50.000 0.00 0.00 35.14 4.40
414 415 1.202794 TCAGCTCACCATTTCAGTGCA 60.203 47.619 0.00 0.00 35.14 4.57
415 416 1.816835 CAGCTCACCATTTCAGTGCAT 59.183 47.619 0.00 0.00 35.14 3.96
416 417 1.816835 AGCTCACCATTTCAGTGCATG 59.183 47.619 0.00 0.00 35.14 4.06
417 418 1.542915 GCTCACCATTTCAGTGCATGT 59.457 47.619 0.00 0.00 35.14 3.21
418 419 2.749076 GCTCACCATTTCAGTGCATGTA 59.251 45.455 0.00 0.00 35.14 2.29
419 420 3.426695 GCTCACCATTTCAGTGCATGTAC 60.427 47.826 5.71 5.71 35.14 2.90
420 421 4.005650 CTCACCATTTCAGTGCATGTACT 58.994 43.478 11.03 11.03 35.14 2.73
421 422 5.159273 TCACCATTTCAGTGCATGTACTA 57.841 39.130 16.53 1.51 35.14 1.82
422 423 5.744171 TCACCATTTCAGTGCATGTACTAT 58.256 37.500 16.53 4.03 35.14 2.12
423 424 5.585844 TCACCATTTCAGTGCATGTACTATG 59.414 40.000 16.53 15.47 35.14 2.23
424 425 5.355071 CACCATTTCAGTGCATGTACTATGT 59.645 40.000 16.53 5.02 0.00 2.29
425 426 5.945784 ACCATTTCAGTGCATGTACTATGTT 59.054 36.000 16.53 2.97 0.00 2.71
426 427 7.065683 CACCATTTCAGTGCATGTACTATGTTA 59.934 37.037 16.53 1.54 0.00 2.41
427 428 7.775093 ACCATTTCAGTGCATGTACTATGTTAT 59.225 33.333 16.53 3.73 0.00 1.89
428 429 8.623903 CCATTTCAGTGCATGTACTATGTTATT 58.376 33.333 16.53 0.00 0.00 1.40
433 434 9.639601 TCAGTGCATGTACTATGTTATTATAGC 57.360 33.333 16.53 0.00 34.67 2.97
434 435 9.645059 CAGTGCATGTACTATGTTATTATAGCT 57.355 33.333 16.53 0.00 34.67 3.32
435 436 9.862371 AGTGCATGTACTATGTTATTATAGCTC 57.138 33.333 15.40 0.00 34.67 4.09
436 437 8.799091 GTGCATGTACTATGTTATTATAGCTCG 58.201 37.037 6.69 0.00 34.67 5.03
437 438 8.520351 TGCATGTACTATGTTATTATAGCTCGT 58.480 33.333 0.00 0.00 34.67 4.18
438 439 8.799091 GCATGTACTATGTTATTATAGCTCGTG 58.201 37.037 0.00 0.00 34.67 4.35
439 440 8.799091 CATGTACTATGTTATTATAGCTCGTGC 58.201 37.037 0.07 0.07 34.67 5.34
453 454 2.502213 TCGTGCTTTCGAGTCTTCAA 57.498 45.000 0.00 0.00 34.85 2.69
454 455 3.026630 TCGTGCTTTCGAGTCTTCAAT 57.973 42.857 0.00 0.00 34.85 2.57
455 456 2.987149 TCGTGCTTTCGAGTCTTCAATC 59.013 45.455 0.00 0.00 34.85 2.67
456 457 2.731451 CGTGCTTTCGAGTCTTCAATCA 59.269 45.455 0.00 0.00 0.00 2.57
457 458 3.369147 CGTGCTTTCGAGTCTTCAATCAT 59.631 43.478 0.00 0.00 0.00 2.45
458 459 4.562789 CGTGCTTTCGAGTCTTCAATCATA 59.437 41.667 0.00 0.00 0.00 2.15
459 460 5.062183 CGTGCTTTCGAGTCTTCAATCATAA 59.938 40.000 0.00 0.00 0.00 1.90
460 461 6.244275 GTGCTTTCGAGTCTTCAATCATAAC 58.756 40.000 0.00 0.00 0.00 1.89
461 462 5.062183 TGCTTTCGAGTCTTCAATCATAACG 59.938 40.000 0.00 0.00 0.00 3.18
462 463 5.288712 GCTTTCGAGTCTTCAATCATAACGA 59.711 40.000 0.00 0.00 0.00 3.85
463 464 6.183360 GCTTTCGAGTCTTCAATCATAACGAA 60.183 38.462 0.00 0.00 35.92 3.85
464 465 7.464710 GCTTTCGAGTCTTCAATCATAACGAAT 60.465 37.037 0.00 0.00 37.16 3.34
465 466 7.827819 TTCGAGTCTTCAATCATAACGAATT 57.172 32.000 0.00 0.00 33.55 2.17
466 467 8.920509 TTCGAGTCTTCAATCATAACGAATTA 57.079 30.769 0.00 0.00 33.55 1.40
467 468 8.920509 TCGAGTCTTCAATCATAACGAATTAA 57.079 30.769 0.00 0.00 0.00 1.40
468 469 9.529325 TCGAGTCTTCAATCATAACGAATTAAT 57.471 29.630 0.00 0.00 0.00 1.40
472 473 9.370126 GTCTTCAATCATAACGAATTAATTCCG 57.630 33.333 20.01 16.88 33.28 4.30
473 474 8.556194 TCTTCAATCATAACGAATTAATTCCGG 58.444 33.333 20.01 11.07 33.28 5.14
474 475 8.439993 TTCAATCATAACGAATTAATTCCGGA 57.560 30.769 20.01 0.00 33.28 5.14
475 476 7.857569 TCAATCATAACGAATTAATTCCGGAC 58.142 34.615 20.01 0.00 33.28 4.79
476 477 7.496263 TCAATCATAACGAATTAATTCCGGACA 59.504 33.333 20.01 0.00 33.28 4.02
477 478 7.795482 ATCATAACGAATTAATTCCGGACAA 57.205 32.000 20.01 0.00 33.28 3.18
478 479 7.612668 TCATAACGAATTAATTCCGGACAAA 57.387 32.000 20.01 0.00 33.28 2.83
479 480 8.215926 TCATAACGAATTAATTCCGGACAAAT 57.784 30.769 20.01 0.86 33.28 2.32
480 481 8.339714 TCATAACGAATTAATTCCGGACAAATC 58.660 33.333 20.01 0.43 33.28 2.17
481 482 5.494632 ACGAATTAATTCCGGACAAATCC 57.505 39.130 20.01 0.00 42.28 3.01
482 483 4.944930 ACGAATTAATTCCGGACAAATCCA 59.055 37.500 20.01 0.00 46.67 3.41
483 484 5.416326 ACGAATTAATTCCGGACAAATCCAA 59.584 36.000 20.01 0.00 46.67 3.53
484 485 6.096282 ACGAATTAATTCCGGACAAATCCAAT 59.904 34.615 20.01 0.00 46.67 3.16
485 486 6.417635 CGAATTAATTCCGGACAAATCCAATG 59.582 38.462 20.01 0.00 46.67 2.82
486 487 7.416964 AATTAATTCCGGACAAATCCAATGA 57.583 32.000 1.83 0.00 46.67 2.57
487 488 6.842437 TTAATTCCGGACAAATCCAATGAA 57.158 33.333 1.83 0.00 46.67 2.57
488 489 4.718940 ATTCCGGACAAATCCAATGAAC 57.281 40.909 1.83 0.00 46.67 3.18
489 490 3.147553 TCCGGACAAATCCAATGAACA 57.852 42.857 0.00 0.00 46.67 3.18
490 491 3.491342 TCCGGACAAATCCAATGAACAA 58.509 40.909 0.00 0.00 46.67 2.83
491 492 3.254657 TCCGGACAAATCCAATGAACAAC 59.745 43.478 0.00 0.00 46.67 3.32
492 493 3.005261 CCGGACAAATCCAATGAACAACA 59.995 43.478 0.00 0.00 46.67 3.33
493 494 4.500545 CCGGACAAATCCAATGAACAACAA 60.501 41.667 0.00 0.00 46.67 2.83
494 495 4.444056 CGGACAAATCCAATGAACAACAAC 59.556 41.667 0.00 0.00 46.67 3.32
495 496 4.444056 GGACAAATCCAATGAACAACAACG 59.556 41.667 0.00 0.00 45.47 4.10
496 497 5.255710 ACAAATCCAATGAACAACAACGA 57.744 34.783 0.00 0.00 0.00 3.85
497 498 5.841810 ACAAATCCAATGAACAACAACGAT 58.158 33.333 0.00 0.00 0.00 3.73
498 499 6.279882 ACAAATCCAATGAACAACAACGATT 58.720 32.000 0.00 0.00 0.00 3.34
499 500 6.760770 ACAAATCCAATGAACAACAACGATTT 59.239 30.769 0.00 0.00 34.73 2.17
500 501 7.923344 ACAAATCCAATGAACAACAACGATTTA 59.077 29.630 0.00 0.00 33.73 1.40
501 502 8.427012 CAAATCCAATGAACAACAACGATTTAG 58.573 33.333 0.00 0.00 33.73 1.85
502 503 6.007936 TCCAATGAACAACAACGATTTAGG 57.992 37.500 0.00 0.00 0.00 2.69
503 504 5.765677 TCCAATGAACAACAACGATTTAGGA 59.234 36.000 0.00 0.00 0.00 2.94
504 505 6.432783 TCCAATGAACAACAACGATTTAGGAT 59.567 34.615 0.00 0.00 0.00 3.24
505 506 6.747280 CCAATGAACAACAACGATTTAGGATC 59.253 38.462 0.00 0.00 0.00 3.36
506 507 7.304735 CAATGAACAACAACGATTTAGGATCA 58.695 34.615 0.00 0.00 0.00 2.92
507 508 6.480524 TGAACAACAACGATTTAGGATCAG 57.519 37.500 0.00 0.00 0.00 2.90
508 509 4.946784 ACAACAACGATTTAGGATCAGC 57.053 40.909 0.00 0.00 0.00 4.26
509 510 4.579869 ACAACAACGATTTAGGATCAGCT 58.420 39.130 0.00 0.00 0.00 4.24
510 511 5.003804 ACAACAACGATTTAGGATCAGCTT 58.996 37.500 0.00 0.00 0.00 3.74
511 512 5.106555 ACAACAACGATTTAGGATCAGCTTG 60.107 40.000 0.00 0.00 0.00 4.01
512 513 3.375299 ACAACGATTTAGGATCAGCTTGC 59.625 43.478 0.00 0.00 0.00 4.01
513 514 3.266510 ACGATTTAGGATCAGCTTGCA 57.733 42.857 0.00 0.00 0.00 4.08
514 515 3.609853 ACGATTTAGGATCAGCTTGCAA 58.390 40.909 0.00 0.00 0.00 4.08
515 516 4.009675 ACGATTTAGGATCAGCTTGCAAA 58.990 39.130 0.00 0.00 0.00 3.68
516 517 4.641989 ACGATTTAGGATCAGCTTGCAAAT 59.358 37.500 0.00 0.00 0.00 2.32
517 518 5.126061 ACGATTTAGGATCAGCTTGCAAATT 59.874 36.000 0.00 0.00 0.00 1.82
518 519 6.038356 CGATTTAGGATCAGCTTGCAAATTT 58.962 36.000 0.00 0.00 0.00 1.82
519 520 6.020121 CGATTTAGGATCAGCTTGCAAATTTG 60.020 38.462 14.03 14.03 0.00 2.32
535 536 6.715344 CAAATTTGCAGTACCGTAGTAGAA 57.285 37.500 5.01 0.00 0.00 2.10
536 537 7.303634 CAAATTTGCAGTACCGTAGTAGAAT 57.696 36.000 5.01 0.00 0.00 2.40
537 538 7.399523 CAAATTTGCAGTACCGTAGTAGAATC 58.600 38.462 5.01 0.00 0.00 2.52
538 539 5.648178 TTTGCAGTACCGTAGTAGAATCA 57.352 39.130 0.00 0.00 0.00 2.57
539 540 5.847111 TTGCAGTACCGTAGTAGAATCAT 57.153 39.130 0.00 0.00 0.00 2.45
540 541 5.847111 TGCAGTACCGTAGTAGAATCATT 57.153 39.130 0.00 0.00 0.00 2.57
541 542 6.947644 TGCAGTACCGTAGTAGAATCATTA 57.052 37.500 0.00 0.00 0.00 1.90
542 543 6.732154 TGCAGTACCGTAGTAGAATCATTAC 58.268 40.000 0.00 0.00 0.00 1.89
543 544 6.148264 GCAGTACCGTAGTAGAATCATTACC 58.852 44.000 0.00 0.00 0.00 2.85
544 545 6.238842 GCAGTACCGTAGTAGAATCATTACCA 60.239 42.308 0.00 0.00 0.00 3.25
545 546 7.682741 GCAGTACCGTAGTAGAATCATTACCAA 60.683 40.741 0.00 0.00 0.00 3.67
546 547 7.646922 CAGTACCGTAGTAGAATCATTACCAAC 59.353 40.741 0.00 0.00 0.00 3.77
547 548 5.585390 ACCGTAGTAGAATCATTACCAACG 58.415 41.667 0.00 0.00 33.88 4.10
548 549 4.980434 CCGTAGTAGAATCATTACCAACGG 59.020 45.833 10.51 10.51 40.99 4.44
549 550 4.443394 CGTAGTAGAATCATTACCAACGGC 59.557 45.833 0.00 0.00 32.10 5.68
550 551 4.481368 AGTAGAATCATTACCAACGGCA 57.519 40.909 0.00 0.00 0.00 5.69
551 552 4.189231 AGTAGAATCATTACCAACGGCAC 58.811 43.478 0.00 0.00 0.00 5.01
568 569 2.010145 CACGCTGTGTGCCTATAAGT 57.990 50.000 8.58 0.00 42.70 2.24
569 570 1.660607 CACGCTGTGTGCCTATAAGTG 59.339 52.381 8.58 0.00 42.70 3.16
570 571 0.652592 CGCTGTGTGCCTATAAGTGC 59.347 55.000 0.00 0.00 38.78 4.40
571 572 0.652592 GCTGTGTGCCTATAAGTGCG 59.347 55.000 0.00 0.00 35.15 5.34
572 573 1.739035 GCTGTGTGCCTATAAGTGCGA 60.739 52.381 0.00 0.00 35.15 5.10
573 574 2.616960 CTGTGTGCCTATAAGTGCGAA 58.383 47.619 0.00 0.00 0.00 4.70
574 575 3.000041 CTGTGTGCCTATAAGTGCGAAA 59.000 45.455 0.00 0.00 0.00 3.46
575 576 3.403968 TGTGTGCCTATAAGTGCGAAAA 58.596 40.909 0.00 0.00 0.00 2.29
576 577 3.435327 TGTGTGCCTATAAGTGCGAAAAG 59.565 43.478 0.00 0.00 0.00 2.27
577 578 3.682858 GTGTGCCTATAAGTGCGAAAAGA 59.317 43.478 0.00 0.00 0.00 2.52
578 579 3.682858 TGTGCCTATAAGTGCGAAAAGAC 59.317 43.478 0.00 0.00 0.00 3.01
579 580 3.682858 GTGCCTATAAGTGCGAAAAGACA 59.317 43.478 0.00 0.00 0.00 3.41
580 581 3.932710 TGCCTATAAGTGCGAAAAGACAG 59.067 43.478 0.00 0.00 0.00 3.51
581 582 3.933332 GCCTATAAGTGCGAAAAGACAGT 59.067 43.478 0.00 0.00 0.00 3.55
606 607 4.202461 ACTTTCCTGAGCACCTAATTGACA 60.202 41.667 0.00 0.00 0.00 3.58
614 615 6.108687 TGAGCACCTAATTGACATCTGTTAG 58.891 40.000 0.00 0.00 0.00 2.34
622 623 4.365514 TTGACATCTGTTAGGGCTTGAA 57.634 40.909 0.00 0.00 0.00 2.69
665 666 3.799366 AGACACAAAACGTACACATGGA 58.201 40.909 0.00 0.00 0.00 3.41
695 696 5.490139 ACATATTTGAGATTTCGGTGCAG 57.510 39.130 0.00 0.00 0.00 4.41
927 936 0.777446 AACCACCCACACCTTGCTAT 59.223 50.000 0.00 0.00 0.00 2.97
928 937 1.663911 ACCACCCACACCTTGCTATA 58.336 50.000 0.00 0.00 0.00 1.31
929 938 1.559682 ACCACCCACACCTTGCTATAG 59.440 52.381 0.00 0.00 0.00 1.31
945 957 4.653801 TGCTATAGCTTCATTAGACCCACA 59.346 41.667 24.61 0.00 42.66 4.17
1445 1466 0.378610 GGCTTCCAGTGCGCTTAATC 59.621 55.000 9.73 0.00 0.00 1.75
1452 1484 2.283298 CAGTGCGCTTAATCCATCAGT 58.717 47.619 9.73 0.00 0.00 3.41
1453 1485 2.679837 CAGTGCGCTTAATCCATCAGTT 59.320 45.455 9.73 0.00 0.00 3.16
1458 1490 5.007626 GTGCGCTTAATCCATCAGTTAATCA 59.992 40.000 9.73 0.00 0.00 2.57
1459 1491 5.237127 TGCGCTTAATCCATCAGTTAATCAG 59.763 40.000 9.73 0.00 0.00 2.90
1460 1492 5.334414 GCGCTTAATCCATCAGTTAATCAGG 60.334 44.000 0.00 0.00 0.00 3.86
1463 1495 6.039717 GCTTAATCCATCAGTTAATCAGGCAA 59.960 38.462 0.00 0.00 0.00 4.52
1464 1496 7.416664 GCTTAATCCATCAGTTAATCAGGCAAA 60.417 37.037 0.00 0.00 0.00 3.68
1650 1698 7.913423 TGTGTACTACAAGAGATACATACGAC 58.087 38.462 0.00 0.00 36.06 4.34
1667 1715 3.952675 CTGGGTGTGCGTGTGTGC 61.953 66.667 0.00 0.00 0.00 4.57
1681 1731 1.943340 TGTGTGCGCATGAACAGTAAA 59.057 42.857 15.91 0.00 33.03 2.01
1683 1733 3.163594 GTGTGCGCATGAACAGTAAATC 58.836 45.455 15.91 0.00 33.03 2.17
1693 1743 6.412072 GCATGAACAGTAAATCGATTAAGCAC 59.588 38.462 11.83 7.44 0.00 4.40
1768 1820 0.716108 CTCGTACCTTGCTCGCTTTG 59.284 55.000 0.00 0.00 0.00 2.77
1775 1827 3.146066 ACCTTGCTCGCTTTGTCATAAA 58.854 40.909 0.00 0.00 0.00 1.40
1776 1828 3.758554 ACCTTGCTCGCTTTGTCATAAAT 59.241 39.130 0.00 0.00 0.00 1.40
1777 1829 4.218417 ACCTTGCTCGCTTTGTCATAAATT 59.782 37.500 0.00 0.00 0.00 1.82
1778 1830 4.795278 CCTTGCTCGCTTTGTCATAAATTC 59.205 41.667 0.00 0.00 0.00 2.17
1779 1831 5.369685 TTGCTCGCTTTGTCATAAATTCA 57.630 34.783 0.00 0.00 0.00 2.57
1780 1832 5.565592 TGCTCGCTTTGTCATAAATTCAT 57.434 34.783 0.00 0.00 0.00 2.57
1781 1833 6.676237 TGCTCGCTTTGTCATAAATTCATA 57.324 33.333 0.00 0.00 0.00 2.15
1782 1834 7.082700 TGCTCGCTTTGTCATAAATTCATAA 57.917 32.000 0.00 0.00 0.00 1.90
1784 1836 7.857389 TGCTCGCTTTGTCATAAATTCATAATC 59.143 33.333 0.00 0.00 0.00 1.75
1785 1837 7.857389 GCTCGCTTTGTCATAAATTCATAATCA 59.143 33.333 0.00 0.00 0.00 2.57
1786 1838 9.162793 CTCGCTTTGTCATAAATTCATAATCAC 57.837 33.333 0.00 0.00 0.00 3.06
1787 1839 8.892723 TCGCTTTGTCATAAATTCATAATCACT 58.107 29.630 0.00 0.00 0.00 3.41
1788 1840 8.950961 CGCTTTGTCATAAATTCATAATCACTG 58.049 33.333 0.00 0.00 0.00 3.66
1791 1843 7.822161 TGTCATAAATTCATAATCACTGGGG 57.178 36.000 0.00 0.00 0.00 4.96
1793 1845 7.502226 TGTCATAAATTCATAATCACTGGGGTC 59.498 37.037 0.00 0.00 0.00 4.46
1800 1852 2.814805 AATCACTGGGGTCTCCAATG 57.185 50.000 0.00 0.00 46.51 2.82
1807 1859 1.114627 GGGGTCTCCAATGGCATTTC 58.885 55.000 10.65 0.00 35.00 2.17
1809 1861 2.460669 GGGTCTCCAATGGCATTTCTT 58.539 47.619 10.65 0.00 0.00 2.52
1810 1862 2.428530 GGGTCTCCAATGGCATTTCTTC 59.571 50.000 10.65 0.75 0.00 2.87
1827 1879 7.901377 GCATTTCTTCGTTATGTACATTACGTT 59.099 33.333 33.58 17.35 42.36 3.99
1887 1939 1.533731 TGAAGCCGGTTTCATCGTTTC 59.466 47.619 27.56 2.47 32.39 2.78
1888 1940 1.533731 GAAGCCGGTTTCATCGTTTCA 59.466 47.619 24.40 0.00 0.00 2.69
1953 2006 1.094785 GGATGTTGAATGGTCGTGGG 58.905 55.000 0.00 0.00 0.00 4.61
1954 2007 0.451783 GATGTTGAATGGTCGTGGGC 59.548 55.000 0.00 0.00 0.00 5.36
1955 2008 0.038166 ATGTTGAATGGTCGTGGGCT 59.962 50.000 0.00 0.00 0.00 5.19
1956 2009 0.605319 TGTTGAATGGTCGTGGGCTC 60.605 55.000 0.00 0.00 0.00 4.70
1957 2010 1.375396 TTGAATGGTCGTGGGCTCG 60.375 57.895 0.00 0.00 0.00 5.03
1958 2011 2.107041 TTGAATGGTCGTGGGCTCGT 62.107 55.000 3.18 0.00 0.00 4.18
1959 2012 2.047274 AATGGTCGTGGGCTCGTG 60.047 61.111 3.18 0.00 0.00 4.35
1960 2013 3.605749 AATGGTCGTGGGCTCGTGG 62.606 63.158 3.18 0.00 0.00 4.94
1972 2025 4.408821 TCGTGGCCCATGTCCTGC 62.409 66.667 0.00 0.00 0.00 4.85
1982 2035 2.702478 CCCATGTCCTGCAGAAGATAGA 59.298 50.000 17.39 0.00 0.00 1.98
1994 2047 8.673711 CCTGCAGAAGATAGAGTATATGTAGTC 58.326 40.741 17.39 0.00 0.00 2.59
1995 2048 9.448438 CTGCAGAAGATAGAGTATATGTAGTCT 57.552 37.037 8.42 11.17 42.08 3.24
2007 2060 8.713708 AGTATATGTAGTCTGGTATGAGCTTT 57.286 34.615 0.00 0.00 0.00 3.51
2036 2089 7.465353 TTTGAATAGTTTGGATTGCTCATCA 57.535 32.000 0.00 0.00 32.79 3.07
2039 2092 6.660521 TGAATAGTTTGGATTGCTCATCACTT 59.339 34.615 0.00 0.00 32.79 3.16
2047 2100 6.051074 TGGATTGCTCATCACTTGTATGTAG 58.949 40.000 0.00 0.00 32.79 2.74
2077 2130 3.642848 AGTGCCAAGGTGTGATTCATTTT 59.357 39.130 0.00 0.00 0.00 1.82
2080 2133 3.259123 GCCAAGGTGTGATTCATTTTCCT 59.741 43.478 0.00 0.00 0.00 3.36
2081 2134 4.262592 GCCAAGGTGTGATTCATTTTCCTT 60.263 41.667 0.00 0.02 34.69 3.36
2082 2135 5.742838 GCCAAGGTGTGATTCATTTTCCTTT 60.743 40.000 9.98 0.00 32.48 3.11
2139 2192 8.991243 TTTGAGAAATATTTGCCATGAAAGAG 57.009 30.769 5.17 0.00 0.00 2.85
2150 2203 1.064166 CATGAAAGAGGATGGGCTGGT 60.064 52.381 0.00 0.00 0.00 4.00
2156 2209 1.384643 AGGATGGGCTGGTAGGGAC 60.385 63.158 0.00 0.00 0.00 4.46
2165 2218 1.132453 GCTGGTAGGGACGAATTTTGC 59.868 52.381 0.00 0.00 0.00 3.68
2166 2219 1.396996 CTGGTAGGGACGAATTTTGCG 59.603 52.381 0.00 0.00 0.00 4.85
2180 2233 0.315568 TTTGCGGCCCATGTTTACAC 59.684 50.000 0.00 0.00 0.00 2.90
2196 2249 1.009675 CACGTGGCTCACTTGTTGC 60.010 57.895 7.95 0.00 30.59 4.17
2199 2252 1.155889 CGTGGCTCACTTGTTGCATA 58.844 50.000 0.00 0.00 31.34 3.14
2205 2258 3.941483 GGCTCACTTGTTGCATACACTAT 59.059 43.478 0.00 0.00 36.21 2.12
2302 2355 5.894393 TCTAACACCATTCAACTCCCAAAAA 59.106 36.000 0.00 0.00 0.00 1.94
2307 2360 7.744733 ACACCATTCAACTCCCAAAAATTATT 58.255 30.769 0.00 0.00 0.00 1.40
2402 2455 9.520204 TCCATTTTTGTACTACTAACGTATAGC 57.480 33.333 0.00 0.00 0.00 2.97
2432 2486 2.749621 CAACATCCAAACTGTAGGGCTC 59.250 50.000 0.12 0.00 0.00 4.70
2438 2492 2.224769 CCAAACTGTAGGGCTCCTTTGA 60.225 50.000 0.00 0.00 34.61 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.061435 AGAAATAAGTAGGAAATGCTTCTATGC 57.939 33.333 0.00 0.00 35.28 3.14
14 15 9.520515 TTTGAGAAATAAGTAGGAAATGCTTCT 57.479 29.630 0.00 0.00 35.28 2.85
17 18 9.301897 ACTTTTGAGAAATAAGTAGGAAATGCT 57.698 29.630 0.00 0.00 30.75 3.79
26 27 6.872020 AGCGCACTACTTTTGAGAAATAAGTA 59.128 34.615 11.47 0.00 34.26 2.24
27 28 5.701290 AGCGCACTACTTTTGAGAAATAAGT 59.299 36.000 11.47 0.00 36.23 2.24
28 29 6.017933 CAGCGCACTACTTTTGAGAAATAAG 58.982 40.000 11.47 0.00 0.00 1.73
29 30 5.468746 ACAGCGCACTACTTTTGAGAAATAA 59.531 36.000 11.47 0.00 0.00 1.40
30 31 4.994852 ACAGCGCACTACTTTTGAGAAATA 59.005 37.500 11.47 0.00 0.00 1.40
31 32 3.815401 ACAGCGCACTACTTTTGAGAAAT 59.185 39.130 11.47 0.00 0.00 2.17
32 33 3.202906 ACAGCGCACTACTTTTGAGAAA 58.797 40.909 11.47 0.00 0.00 2.52
33 34 2.833794 ACAGCGCACTACTTTTGAGAA 58.166 42.857 11.47 0.00 0.00 2.87
34 35 2.526304 ACAGCGCACTACTTTTGAGA 57.474 45.000 11.47 0.00 0.00 3.27
35 36 4.725556 TTTACAGCGCACTACTTTTGAG 57.274 40.909 11.47 0.00 0.00 3.02
36 37 5.487153 TTTTTACAGCGCACTACTTTTGA 57.513 34.783 11.47 0.00 0.00 2.69
75 76 4.183865 TCTCTCAACGACCAGCAATATTG 58.816 43.478 11.27 11.27 0.00 1.90
76 77 4.471904 TCTCTCAACGACCAGCAATATT 57.528 40.909 0.00 0.00 0.00 1.28
77 78 4.471904 TTCTCTCAACGACCAGCAATAT 57.528 40.909 0.00 0.00 0.00 1.28
78 79 3.953712 TTCTCTCAACGACCAGCAATA 57.046 42.857 0.00 0.00 0.00 1.90
79 80 2.839486 TTCTCTCAACGACCAGCAAT 57.161 45.000 0.00 0.00 0.00 3.56
80 81 2.613026 TTTCTCTCAACGACCAGCAA 57.387 45.000 0.00 0.00 0.00 3.91
81 82 2.839486 ATTTCTCTCAACGACCAGCA 57.161 45.000 0.00 0.00 0.00 4.41
82 83 4.870426 TGAATATTTCTCTCAACGACCAGC 59.130 41.667 0.00 0.00 0.00 4.85
83 84 6.968131 TTGAATATTTCTCTCAACGACCAG 57.032 37.500 0.00 0.00 0.00 4.00
84 85 6.708502 TGTTTGAATATTTCTCTCAACGACCA 59.291 34.615 0.00 0.00 0.00 4.02
85 86 7.129109 TGTTTGAATATTTCTCTCAACGACC 57.871 36.000 0.00 0.00 0.00 4.79
86 87 7.534239 GGTTGTTTGAATATTTCTCTCAACGAC 59.466 37.037 0.00 0.00 36.22 4.34
87 88 7.227711 TGGTTGTTTGAATATTTCTCTCAACGA 59.772 33.333 0.00 9.53 36.22 3.85
88 89 7.359595 TGGTTGTTTGAATATTTCTCTCAACG 58.640 34.615 13.08 0.00 36.22 4.10
89 90 8.352942 ACTGGTTGTTTGAATATTTCTCTCAAC 58.647 33.333 11.98 11.98 35.51 3.18
90 91 8.463930 ACTGGTTGTTTGAATATTTCTCTCAA 57.536 30.769 0.00 0.00 0.00 3.02
91 92 9.219603 CTACTGGTTGTTTGAATATTTCTCTCA 57.780 33.333 0.00 0.00 0.00 3.27
92 93 9.436957 TCTACTGGTTGTTTGAATATTTCTCTC 57.563 33.333 0.00 0.00 0.00 3.20
93 94 9.793259 TTCTACTGGTTGTTTGAATATTTCTCT 57.207 29.630 0.00 0.00 0.00 3.10
152 153 9.691362 GGTGTTTTGAATAACTTAACATCATGT 57.309 29.630 0.00 0.00 31.77 3.21
153 154 8.849490 CGGTGTTTTGAATAACTTAACATCATG 58.151 33.333 0.00 0.00 31.08 3.07
154 155 8.573035 ACGGTGTTTTGAATAACTTAACATCAT 58.427 29.630 0.00 0.00 31.08 2.45
155 156 7.932335 ACGGTGTTTTGAATAACTTAACATCA 58.068 30.769 0.00 0.00 31.08 3.07
156 157 8.071368 TGACGGTGTTTTGAATAACTTAACATC 58.929 33.333 0.00 0.00 32.10 3.06
157 158 7.932335 TGACGGTGTTTTGAATAACTTAACAT 58.068 30.769 0.00 0.00 32.10 2.71
158 159 7.317842 TGACGGTGTTTTGAATAACTTAACA 57.682 32.000 0.00 0.00 0.00 2.41
159 160 6.854381 CCTGACGGTGTTTTGAATAACTTAAC 59.146 38.462 0.00 0.00 0.00 2.01
160 161 6.513720 GCCTGACGGTGTTTTGAATAACTTAA 60.514 38.462 0.00 0.00 0.00 1.85
161 162 5.049267 GCCTGACGGTGTTTTGAATAACTTA 60.049 40.000 0.00 0.00 0.00 2.24
162 163 4.261447 GCCTGACGGTGTTTTGAATAACTT 60.261 41.667 0.00 0.00 0.00 2.66
163 164 3.252458 GCCTGACGGTGTTTTGAATAACT 59.748 43.478 0.00 0.00 0.00 2.24
164 165 3.561503 GCCTGACGGTGTTTTGAATAAC 58.438 45.455 0.00 0.00 0.00 1.89
165 166 2.554893 GGCCTGACGGTGTTTTGAATAA 59.445 45.455 0.00 0.00 0.00 1.40
166 167 2.156098 GGCCTGACGGTGTTTTGAATA 58.844 47.619 0.00 0.00 0.00 1.75
167 168 0.958822 GGCCTGACGGTGTTTTGAAT 59.041 50.000 0.00 0.00 0.00 2.57
168 169 0.394488 TGGCCTGACGGTGTTTTGAA 60.394 50.000 3.32 0.00 0.00 2.69
169 170 0.394488 TTGGCCTGACGGTGTTTTGA 60.394 50.000 3.32 0.00 0.00 2.69
170 171 0.030638 CTTGGCCTGACGGTGTTTTG 59.969 55.000 3.32 0.00 0.00 2.44
171 172 1.106944 CCTTGGCCTGACGGTGTTTT 61.107 55.000 3.32 0.00 0.00 2.43
172 173 1.528309 CCTTGGCCTGACGGTGTTT 60.528 57.895 3.32 0.00 0.00 2.83
173 174 2.113139 CCTTGGCCTGACGGTGTT 59.887 61.111 3.32 0.00 0.00 3.32
174 175 2.847234 TCCTTGGCCTGACGGTGT 60.847 61.111 3.32 0.00 0.00 4.16
175 176 2.358737 GTCCTTGGCCTGACGGTG 60.359 66.667 3.32 0.00 0.00 4.94
176 177 2.847234 TGTCCTTGGCCTGACGGT 60.847 61.111 3.32 0.00 34.18 4.83
177 178 2.358737 GTGTCCTTGGCCTGACGG 60.359 66.667 3.32 0.00 34.18 4.79
178 179 1.961277 GTGTGTCCTTGGCCTGACG 60.961 63.158 3.32 0.00 34.18 4.35
179 180 1.600916 GGTGTGTCCTTGGCCTGAC 60.601 63.158 3.32 9.00 0.00 3.51
180 181 1.640593 TTGGTGTGTCCTTGGCCTGA 61.641 55.000 3.32 0.00 37.07 3.86
181 182 0.540365 ATTGGTGTGTCCTTGGCCTG 60.540 55.000 3.32 0.00 37.07 4.85
182 183 0.540365 CATTGGTGTGTCCTTGGCCT 60.540 55.000 3.32 0.00 37.07 5.19
183 184 0.539438 TCATTGGTGTGTCCTTGGCC 60.539 55.000 0.00 0.00 37.07 5.36
184 185 1.327303 TTCATTGGTGTGTCCTTGGC 58.673 50.000 0.00 0.00 37.07 4.52
185 186 5.009631 TCTATTTCATTGGTGTGTCCTTGG 58.990 41.667 0.00 0.00 37.07 3.61
186 187 6.764308 ATCTATTTCATTGGTGTGTCCTTG 57.236 37.500 0.00 0.00 37.07 3.61
187 188 7.781324 AAATCTATTTCATTGGTGTGTCCTT 57.219 32.000 0.00 0.00 37.07 3.36
188 189 7.451255 TGAAAATCTATTTCATTGGTGTGTCCT 59.549 33.333 0.00 0.00 33.90 3.85
189 190 7.542130 GTGAAAATCTATTTCATTGGTGTGTCC 59.458 37.037 6.86 0.00 40.12 4.02
190 191 8.081633 TGTGAAAATCTATTTCATTGGTGTGTC 58.918 33.333 6.86 0.00 40.12 3.67
191 192 7.950512 TGTGAAAATCTATTTCATTGGTGTGT 58.049 30.769 6.86 0.00 40.12 3.72
192 193 8.815141 TTGTGAAAATCTATTTCATTGGTGTG 57.185 30.769 6.86 0.00 40.12 3.82
193 194 9.829507 TTTTGTGAAAATCTATTTCATTGGTGT 57.170 25.926 6.86 0.00 40.12 4.16
237 238 9.352784 GCTTTGCACATTAGATTATTTTGTGTA 57.647 29.630 0.00 0.00 39.79 2.90
238 239 7.871973 TGCTTTGCACATTAGATTATTTTGTGT 59.128 29.630 0.00 0.00 39.79 3.72
239 240 8.242085 TGCTTTGCACATTAGATTATTTTGTG 57.758 30.769 0.00 0.00 40.42 3.33
256 257 2.672714 CAGTCTAGTACGTGCTTTGCA 58.327 47.619 12.53 0.00 35.60 4.08
257 258 1.390463 GCAGTCTAGTACGTGCTTTGC 59.610 52.381 12.53 12.92 32.66 3.68
258 259 2.947852 AGCAGTCTAGTACGTGCTTTG 58.052 47.619 12.53 5.76 38.57 2.77
259 260 4.358494 CTAGCAGTCTAGTACGTGCTTT 57.642 45.455 12.53 0.00 40.62 3.51
269 270 5.871834 AGGGAGTACATACTAGCAGTCTAG 58.128 45.833 0.00 0.00 46.06 2.43
270 271 5.221884 GGAGGGAGTACATACTAGCAGTCTA 60.222 48.000 0.00 0.00 36.50 2.59
271 272 4.446600 GGAGGGAGTACATACTAGCAGTCT 60.447 50.000 0.00 0.00 36.50 3.24
272 273 3.822167 GGAGGGAGTACATACTAGCAGTC 59.178 52.174 0.00 0.00 36.50 3.51
273 274 3.748027 CGGAGGGAGTACATACTAGCAGT 60.748 52.174 0.00 0.00 36.50 4.40
274 275 2.814919 CGGAGGGAGTACATACTAGCAG 59.185 54.545 0.00 0.00 36.50 4.24
275 276 2.174210 ACGGAGGGAGTACATACTAGCA 59.826 50.000 0.00 0.00 36.50 3.49
276 277 2.861274 ACGGAGGGAGTACATACTAGC 58.139 52.381 0.00 0.00 36.50 3.42
277 278 3.819902 GGAACGGAGGGAGTACATACTAG 59.180 52.174 0.00 0.00 36.50 2.57
278 279 3.202818 TGGAACGGAGGGAGTACATACTA 59.797 47.826 0.00 0.00 36.50 1.82
279 280 2.024655 TGGAACGGAGGGAGTACATACT 60.025 50.000 0.00 0.00 39.71 2.12
280 281 2.381911 TGGAACGGAGGGAGTACATAC 58.618 52.381 0.00 0.00 0.00 2.39
281 282 2.832643 TGGAACGGAGGGAGTACATA 57.167 50.000 0.00 0.00 0.00 2.29
282 283 1.946984 TTGGAACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
283 284 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
284 285 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
285 286 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
286 287 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
287 288 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
288 289 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
289 290 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
290 291 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
291 292 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
292 293 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
293 294 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
294 295 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
295 296 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
296 297 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
297 298 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
298 299 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
299 300 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
300 301 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
301 302 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
302 303 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
303 304 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
304 305 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
305 306 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
306 307 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
307 308 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
308 309 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
309 310 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
322 323 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
323 324 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
324 325 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
325 326 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
326 327 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
327 328 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
328 329 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
329 330 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
330 331 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
331 332 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
332 333 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
333 334 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
334 335 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
335 336 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
336 337 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
337 338 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
338 339 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
339 340 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
340 341 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
341 342 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
342 343 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
343 344 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
344 345 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
345 346 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
346 347 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
347 348 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
348 349 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
349 350 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
350 351 8.537016 CATATATACTCCCTCCGTTCCAAATTA 58.463 37.037 0.00 0.00 0.00 1.40
351 352 5.906772 ATATACTCCCTCCGTTCCAAATT 57.093 39.130 0.00 0.00 0.00 1.82
352 353 6.500751 ACATATATACTCCCTCCGTTCCAAAT 59.499 38.462 0.00 0.00 0.00 2.32
353 354 5.842328 ACATATATACTCCCTCCGTTCCAAA 59.158 40.000 0.00 0.00 0.00 3.28
354 355 5.245301 CACATATATACTCCCTCCGTTCCAA 59.755 44.000 0.00 0.00 0.00 3.53
355 356 4.770531 CACATATATACTCCCTCCGTTCCA 59.229 45.833 0.00 0.00 0.00 3.53
356 357 4.381718 GCACATATATACTCCCTCCGTTCC 60.382 50.000 0.00 0.00 0.00 3.62
357 358 4.219944 TGCACATATATACTCCCTCCGTTC 59.780 45.833 0.00 0.00 0.00 3.95
358 359 4.157246 TGCACATATATACTCCCTCCGTT 58.843 43.478 0.00 0.00 0.00 4.44
359 360 3.774734 TGCACATATATACTCCCTCCGT 58.225 45.455 0.00 0.00 0.00 4.69
360 361 4.220821 AGTTGCACATATATACTCCCTCCG 59.779 45.833 0.00 0.00 0.00 4.63
361 362 5.482175 AGAGTTGCACATATATACTCCCTCC 59.518 44.000 8.48 0.00 36.71 4.30
362 363 6.393990 CAGAGTTGCACATATATACTCCCTC 58.606 44.000 8.48 1.08 36.71 4.30
363 364 6.352016 CAGAGTTGCACATATATACTCCCT 57.648 41.667 8.48 0.00 36.71 4.20
379 380 2.793790 GAGCTGATCGTATGCAGAGTTG 59.206 50.000 0.00 0.00 34.06 3.16
380 381 2.428530 TGAGCTGATCGTATGCAGAGTT 59.571 45.455 0.00 0.00 34.06 3.01
381 382 2.027385 TGAGCTGATCGTATGCAGAGT 58.973 47.619 0.00 0.00 34.06 3.24
382 383 2.392821 GTGAGCTGATCGTATGCAGAG 58.607 52.381 0.00 0.00 34.06 3.35
383 384 1.067669 GGTGAGCTGATCGTATGCAGA 59.932 52.381 0.00 0.00 34.06 4.26
384 385 1.202452 TGGTGAGCTGATCGTATGCAG 60.202 52.381 0.00 0.00 35.28 4.41
385 386 0.823460 TGGTGAGCTGATCGTATGCA 59.177 50.000 0.00 0.00 0.00 3.96
386 387 2.160822 ATGGTGAGCTGATCGTATGC 57.839 50.000 0.00 0.00 0.00 3.14
387 388 4.122046 TGAAATGGTGAGCTGATCGTATG 58.878 43.478 0.00 0.00 0.00 2.39
388 389 4.141846 ACTGAAATGGTGAGCTGATCGTAT 60.142 41.667 0.00 0.00 0.00 3.06
389 390 3.195610 ACTGAAATGGTGAGCTGATCGTA 59.804 43.478 0.00 0.00 0.00 3.43
390 391 2.027745 ACTGAAATGGTGAGCTGATCGT 60.028 45.455 0.00 0.00 0.00 3.73
391 392 2.350804 CACTGAAATGGTGAGCTGATCG 59.649 50.000 0.00 0.00 36.89 3.69
392 393 2.097142 GCACTGAAATGGTGAGCTGATC 59.903 50.000 0.00 0.00 36.89 2.92
393 394 2.089980 GCACTGAAATGGTGAGCTGAT 58.910 47.619 0.00 0.00 36.89 2.90
394 395 1.202794 TGCACTGAAATGGTGAGCTGA 60.203 47.619 0.00 0.00 36.89 4.26
395 396 1.241165 TGCACTGAAATGGTGAGCTG 58.759 50.000 0.00 0.00 36.89 4.24
396 397 1.816835 CATGCACTGAAATGGTGAGCT 59.183 47.619 0.00 0.00 36.89 4.09
397 398 1.542915 ACATGCACTGAAATGGTGAGC 59.457 47.619 0.00 0.00 36.89 4.26
398 399 4.005650 AGTACATGCACTGAAATGGTGAG 58.994 43.478 0.00 0.00 36.89 3.51
399 400 4.019792 AGTACATGCACTGAAATGGTGA 57.980 40.909 0.00 0.00 36.89 4.02
400 401 5.355071 ACATAGTACATGCACTGAAATGGTG 59.645 40.000 8.95 0.00 37.70 4.17
401 402 5.500234 ACATAGTACATGCACTGAAATGGT 58.500 37.500 8.95 0.00 0.00 3.55
402 403 6.441093 AACATAGTACATGCACTGAAATGG 57.559 37.500 8.95 0.00 0.00 3.16
407 408 9.639601 GCTATAATAACATAGTACATGCACTGA 57.360 33.333 8.95 0.00 32.11 3.41
408 409 9.645059 AGCTATAATAACATAGTACATGCACTG 57.355 33.333 8.95 0.00 32.11 3.66
409 410 9.862371 GAGCTATAATAACATAGTACATGCACT 57.138 33.333 3.59 3.59 32.11 4.40
410 411 8.799091 CGAGCTATAATAACATAGTACATGCAC 58.201 37.037 0.00 0.00 32.11 4.57
411 412 8.520351 ACGAGCTATAATAACATAGTACATGCA 58.480 33.333 0.00 0.00 32.11 3.96
412 413 8.799091 CACGAGCTATAATAACATAGTACATGC 58.201 37.037 0.00 0.00 32.11 4.06
413 414 8.799091 GCACGAGCTATAATAACATAGTACATG 58.201 37.037 0.00 0.00 37.91 3.21
414 415 8.912787 GCACGAGCTATAATAACATAGTACAT 57.087 34.615 0.00 0.00 37.91 2.29
434 435 2.502213 TTGAAGACTCGAAAGCACGA 57.498 45.000 0.00 0.00 40.00 4.35
435 436 2.731451 TGATTGAAGACTCGAAAGCACG 59.269 45.455 0.00 0.00 0.00 5.34
436 437 4.935885 ATGATTGAAGACTCGAAAGCAC 57.064 40.909 0.00 0.00 0.00 4.40
437 438 5.062183 CGTTATGATTGAAGACTCGAAAGCA 59.938 40.000 0.00 0.00 0.00 3.91
438 439 5.288712 TCGTTATGATTGAAGACTCGAAAGC 59.711 40.000 0.00 0.00 0.00 3.51
439 440 6.871044 TCGTTATGATTGAAGACTCGAAAG 57.129 37.500 0.00 0.00 0.00 2.62
440 441 7.827819 ATTCGTTATGATTGAAGACTCGAAA 57.172 32.000 0.00 0.00 38.05 3.46
441 442 7.827819 AATTCGTTATGATTGAAGACTCGAA 57.172 32.000 0.00 0.00 38.67 3.71
442 443 8.920509 TTAATTCGTTATGATTGAAGACTCGA 57.079 30.769 0.00 0.00 0.00 4.04
446 447 9.370126 CGGAATTAATTCGTTATGATTGAAGAC 57.630 33.333 19.41 2.07 37.67 3.01
447 448 8.556194 CCGGAATTAATTCGTTATGATTGAAGA 58.444 33.333 19.41 0.00 37.67 2.87
448 449 8.556194 TCCGGAATTAATTCGTTATGATTGAAG 58.444 33.333 19.41 2.00 37.67 3.02
449 450 8.339714 GTCCGGAATTAATTCGTTATGATTGAA 58.660 33.333 19.41 0.00 37.67 2.69
450 451 7.496263 TGTCCGGAATTAATTCGTTATGATTGA 59.504 33.333 19.41 5.13 37.67 2.57
451 452 7.635423 TGTCCGGAATTAATTCGTTATGATTG 58.365 34.615 19.41 3.63 37.67 2.67
452 453 7.795482 TGTCCGGAATTAATTCGTTATGATT 57.205 32.000 19.41 0.00 37.67 2.57
453 454 7.795482 TTGTCCGGAATTAATTCGTTATGAT 57.205 32.000 19.41 0.00 37.67 2.45
454 455 7.612668 TTTGTCCGGAATTAATTCGTTATGA 57.387 32.000 19.41 9.79 37.67 2.15
455 456 7.589954 GGATTTGTCCGGAATTAATTCGTTATG 59.410 37.037 19.41 8.46 37.67 1.90
456 457 7.283580 TGGATTTGTCCGGAATTAATTCGTTAT 59.716 33.333 19.41 7.78 37.67 1.89
457 458 6.598457 TGGATTTGTCCGGAATTAATTCGTTA 59.402 34.615 19.41 6.52 37.67 3.18
458 459 5.416326 TGGATTTGTCCGGAATTAATTCGTT 59.584 36.000 19.41 1.22 37.67 3.85
459 460 4.944930 TGGATTTGTCCGGAATTAATTCGT 59.055 37.500 19.41 1.65 37.67 3.85
460 461 5.493133 TGGATTTGTCCGGAATTAATTCG 57.507 39.130 19.41 14.76 37.67 3.34
461 462 7.488322 TCATTGGATTTGTCCGGAATTAATTC 58.512 34.615 18.22 18.22 36.08 2.17
462 463 7.416964 TCATTGGATTTGTCCGGAATTAATT 57.583 32.000 5.23 0.00 0.00 1.40
463 464 7.093552 TGTTCATTGGATTTGTCCGGAATTAAT 60.094 33.333 5.23 6.16 0.00 1.40
464 465 6.209589 TGTTCATTGGATTTGTCCGGAATTAA 59.790 34.615 5.23 0.36 0.00 1.40
465 466 5.712446 TGTTCATTGGATTTGTCCGGAATTA 59.288 36.000 5.23 0.00 0.00 1.40
466 467 4.526262 TGTTCATTGGATTTGTCCGGAATT 59.474 37.500 5.23 0.00 0.00 2.17
467 468 4.085733 TGTTCATTGGATTTGTCCGGAAT 58.914 39.130 5.23 0.00 0.00 3.01
468 469 3.491342 TGTTCATTGGATTTGTCCGGAA 58.509 40.909 5.23 0.00 0.00 4.30
469 470 3.147553 TGTTCATTGGATTTGTCCGGA 57.852 42.857 0.00 0.00 0.00 5.14
470 471 3.005261 TGTTGTTCATTGGATTTGTCCGG 59.995 43.478 0.00 0.00 0.00 5.14
471 472 4.235939 TGTTGTTCATTGGATTTGTCCG 57.764 40.909 0.00 0.00 0.00 4.79
472 473 4.444056 CGTTGTTGTTCATTGGATTTGTCC 59.556 41.667 0.00 0.00 0.00 4.02
473 474 5.277825 TCGTTGTTGTTCATTGGATTTGTC 58.722 37.500 0.00 0.00 0.00 3.18
474 475 5.255710 TCGTTGTTGTTCATTGGATTTGT 57.744 34.783 0.00 0.00 0.00 2.83
475 476 6.768029 AATCGTTGTTGTTCATTGGATTTG 57.232 33.333 0.00 0.00 0.00 2.32
476 477 7.598493 CCTAAATCGTTGTTGTTCATTGGATTT 59.402 33.333 0.00 0.00 35.65 2.17
477 478 7.040062 TCCTAAATCGTTGTTGTTCATTGGATT 60.040 33.333 0.00 0.00 0.00 3.01
478 479 6.432783 TCCTAAATCGTTGTTGTTCATTGGAT 59.567 34.615 0.00 0.00 0.00 3.41
479 480 5.765677 TCCTAAATCGTTGTTGTTCATTGGA 59.234 36.000 0.00 0.00 0.00 3.53
480 481 6.007936 TCCTAAATCGTTGTTGTTCATTGG 57.992 37.500 0.00 0.00 0.00 3.16
481 482 7.304735 TGATCCTAAATCGTTGTTGTTCATTG 58.695 34.615 0.00 0.00 0.00 2.82
482 483 7.447374 TGATCCTAAATCGTTGTTGTTCATT 57.553 32.000 0.00 0.00 0.00 2.57
483 484 6.403636 GCTGATCCTAAATCGTTGTTGTTCAT 60.404 38.462 0.00 0.00 0.00 2.57
484 485 5.106712 GCTGATCCTAAATCGTTGTTGTTCA 60.107 40.000 0.00 0.00 0.00 3.18
485 486 5.122396 AGCTGATCCTAAATCGTTGTTGTTC 59.878 40.000 0.00 0.00 0.00 3.18
486 487 5.003804 AGCTGATCCTAAATCGTTGTTGTT 58.996 37.500 0.00 0.00 0.00 2.83
487 488 4.579869 AGCTGATCCTAAATCGTTGTTGT 58.420 39.130 0.00 0.00 0.00 3.32
488 489 5.327091 CAAGCTGATCCTAAATCGTTGTTG 58.673 41.667 0.00 0.00 0.00 3.33
489 490 4.142600 GCAAGCTGATCCTAAATCGTTGTT 60.143 41.667 0.00 0.00 0.00 2.83
490 491 3.375299 GCAAGCTGATCCTAAATCGTTGT 59.625 43.478 0.00 0.00 0.00 3.32
491 492 3.374988 TGCAAGCTGATCCTAAATCGTTG 59.625 43.478 0.00 0.00 0.00 4.10
492 493 3.609853 TGCAAGCTGATCCTAAATCGTT 58.390 40.909 0.00 0.00 0.00 3.85
493 494 3.266510 TGCAAGCTGATCCTAAATCGT 57.733 42.857 0.00 0.00 0.00 3.73
494 495 4.621068 TTTGCAAGCTGATCCTAAATCG 57.379 40.909 0.00 0.00 0.00 3.34
495 496 7.230466 CAAATTTGCAAGCTGATCCTAAATC 57.770 36.000 5.01 0.00 0.00 2.17
512 513 6.715344 TTCTACTACGGTACTGCAAATTTG 57.285 37.500 14.03 14.03 0.00 2.32
513 514 7.101054 TGATTCTACTACGGTACTGCAAATTT 58.899 34.615 0.23 0.00 0.00 1.82
514 515 6.636705 TGATTCTACTACGGTACTGCAAATT 58.363 36.000 0.23 0.00 0.00 1.82
515 516 6.216801 TGATTCTACTACGGTACTGCAAAT 57.783 37.500 0.23 0.00 0.00 2.32
516 517 5.648178 TGATTCTACTACGGTACTGCAAA 57.352 39.130 0.23 0.00 0.00 3.68
517 518 5.847111 ATGATTCTACTACGGTACTGCAA 57.153 39.130 0.23 0.00 0.00 4.08
518 519 5.847111 AATGATTCTACTACGGTACTGCA 57.153 39.130 0.23 0.00 0.00 4.41
519 520 6.148264 GGTAATGATTCTACTACGGTACTGC 58.852 44.000 0.23 0.00 0.00 4.40
520 521 7.268199 TGGTAATGATTCTACTACGGTACTG 57.732 40.000 0.00 0.00 0.00 2.74
521 522 7.467811 CGTTGGTAATGATTCTACTACGGTACT 60.468 40.741 0.00 0.00 0.00 2.73
522 523 6.634436 CGTTGGTAATGATTCTACTACGGTAC 59.366 42.308 0.00 0.00 0.00 3.34
523 524 6.238731 CCGTTGGTAATGATTCTACTACGGTA 60.239 42.308 15.57 0.00 39.63 4.02
524 525 5.450965 CCGTTGGTAATGATTCTACTACGGT 60.451 44.000 15.57 0.00 39.63 4.83
525 526 4.980434 CCGTTGGTAATGATTCTACTACGG 59.020 45.833 12.20 12.20 39.09 4.02
526 527 4.443394 GCCGTTGGTAATGATTCTACTACG 59.557 45.833 0.00 0.00 32.34 3.51
527 528 5.233689 GTGCCGTTGGTAATGATTCTACTAC 59.766 44.000 0.00 0.00 0.00 2.73
528 529 5.353938 GTGCCGTTGGTAATGATTCTACTA 58.646 41.667 0.00 0.00 0.00 1.82
529 530 4.189231 GTGCCGTTGGTAATGATTCTACT 58.811 43.478 0.00 0.00 0.00 2.57
530 531 3.000925 CGTGCCGTTGGTAATGATTCTAC 59.999 47.826 0.00 0.00 0.00 2.59
531 532 3.191669 CGTGCCGTTGGTAATGATTCTA 58.808 45.455 0.00 0.00 0.00 2.10
532 533 2.006888 CGTGCCGTTGGTAATGATTCT 58.993 47.619 0.00 0.00 0.00 2.40
533 534 1.531058 GCGTGCCGTTGGTAATGATTC 60.531 52.381 0.00 0.00 0.00 2.52
534 535 0.450184 GCGTGCCGTTGGTAATGATT 59.550 50.000 0.00 0.00 0.00 2.57
535 536 0.392461 AGCGTGCCGTTGGTAATGAT 60.392 50.000 0.00 0.00 0.00 2.45
536 537 1.004320 AGCGTGCCGTTGGTAATGA 60.004 52.632 0.00 0.00 0.00 2.57
537 538 1.134487 CAGCGTGCCGTTGGTAATG 59.866 57.895 4.05 0.00 34.62 1.90
538 539 1.302192 ACAGCGTGCCGTTGGTAAT 60.302 52.632 13.89 0.00 42.05 1.89
539 540 2.109387 ACAGCGTGCCGTTGGTAA 59.891 55.556 13.89 0.00 42.05 2.85
540 541 2.663520 CACAGCGTGCCGTTGGTA 60.664 61.111 13.89 0.00 42.05 3.25
541 542 4.849310 ACACAGCGTGCCGTTGGT 62.849 61.111 13.89 7.62 42.05 3.67
542 543 4.312231 CACACAGCGTGCCGTTGG 62.312 66.667 13.89 7.14 42.05 3.77
552 553 0.652592 CGCACTTATAGGCACACAGC 59.347 55.000 0.00 0.00 44.65 4.40
553 554 2.293677 TCGCACTTATAGGCACACAG 57.706 50.000 0.00 0.00 0.00 3.66
554 555 2.753055 TTCGCACTTATAGGCACACA 57.247 45.000 0.00 0.00 0.00 3.72
555 556 3.682858 TCTTTTCGCACTTATAGGCACAC 59.317 43.478 0.00 0.00 0.00 3.82
556 557 3.682858 GTCTTTTCGCACTTATAGGCACA 59.317 43.478 0.00 0.00 0.00 4.57
557 558 3.682858 TGTCTTTTCGCACTTATAGGCAC 59.317 43.478 0.00 0.00 0.00 5.01
558 559 3.932710 CTGTCTTTTCGCACTTATAGGCA 59.067 43.478 0.00 0.00 0.00 4.75
559 560 3.933332 ACTGTCTTTTCGCACTTATAGGC 59.067 43.478 0.00 0.00 0.00 3.93
560 561 5.062308 GTGACTGTCTTTTCGCACTTATAGG 59.938 44.000 9.51 0.00 0.00 2.57
561 562 5.864474 AGTGACTGTCTTTTCGCACTTATAG 59.136 40.000 9.51 0.00 33.19 1.31
562 563 5.779922 AGTGACTGTCTTTTCGCACTTATA 58.220 37.500 9.51 0.00 33.19 0.98
563 564 4.632153 AGTGACTGTCTTTTCGCACTTAT 58.368 39.130 9.51 0.00 33.19 1.73
564 565 4.054780 AGTGACTGTCTTTTCGCACTTA 57.945 40.909 9.51 0.00 33.19 2.24
565 566 2.906354 AGTGACTGTCTTTTCGCACTT 58.094 42.857 9.51 0.00 33.19 3.16
566 567 2.604046 AGTGACTGTCTTTTCGCACT 57.396 45.000 9.51 0.00 0.00 4.40
567 568 3.546218 GGAAAGTGACTGTCTTTTCGCAC 60.546 47.826 21.00 8.20 35.62 5.34
568 569 2.612212 GGAAAGTGACTGTCTTTTCGCA 59.388 45.455 21.00 0.00 35.62 5.10
569 570 2.872858 AGGAAAGTGACTGTCTTTTCGC 59.127 45.455 21.00 16.68 36.03 4.70
570 571 4.119862 TCAGGAAAGTGACTGTCTTTTCG 58.880 43.478 21.00 13.90 36.03 3.46
571 572 4.024472 GCTCAGGAAAGTGACTGTCTTTTC 60.024 45.833 20.30 20.30 35.62 2.29
572 573 3.879892 GCTCAGGAAAGTGACTGTCTTTT 59.120 43.478 9.51 9.51 35.62 2.27
573 574 3.118261 TGCTCAGGAAAGTGACTGTCTTT 60.118 43.478 9.51 2.09 37.75 2.52
574 575 2.435805 TGCTCAGGAAAGTGACTGTCTT 59.564 45.455 9.51 0.00 36.17 3.01
575 576 2.042464 TGCTCAGGAAAGTGACTGTCT 58.958 47.619 9.51 0.00 36.17 3.41
576 577 2.139118 GTGCTCAGGAAAGTGACTGTC 58.861 52.381 0.00 0.00 36.17 3.51
577 578 1.202698 GGTGCTCAGGAAAGTGACTGT 60.203 52.381 0.00 0.00 36.17 3.55
578 579 1.071385 AGGTGCTCAGGAAAGTGACTG 59.929 52.381 0.00 0.00 36.07 3.51
579 580 1.428869 AGGTGCTCAGGAAAGTGACT 58.571 50.000 0.00 0.00 0.00 3.41
580 581 3.402628 TTAGGTGCTCAGGAAAGTGAC 57.597 47.619 0.00 0.00 0.00 3.67
581 582 4.041567 TCAATTAGGTGCTCAGGAAAGTGA 59.958 41.667 0.00 0.00 0.00 3.41
606 607 5.071115 GGAGATAGTTCAAGCCCTAACAGAT 59.929 44.000 0.00 0.00 0.00 2.90
614 615 2.856222 CATGGGAGATAGTTCAAGCCC 58.144 52.381 0.00 0.00 36.11 5.19
622 623 5.130975 TCTTTACACATGCATGGGAGATAGT 59.869 40.000 34.98 14.16 34.60 2.12
695 696 2.919859 CTCACATCGCATCGTCCATATC 59.080 50.000 0.00 0.00 0.00 1.63
927 936 5.007682 GGTTTTGTGGGTCTAATGAAGCTA 58.992 41.667 0.00 0.00 0.00 3.32
928 937 3.826729 GGTTTTGTGGGTCTAATGAAGCT 59.173 43.478 0.00 0.00 0.00 3.74
929 938 3.056821 GGGTTTTGTGGGTCTAATGAAGC 60.057 47.826 0.00 0.00 0.00 3.86
945 957 2.835156 GAGAGTGAGCTAGGAGGGTTTT 59.165 50.000 0.00 0.00 0.00 2.43
1445 1466 5.735354 GCTGATTTGCCTGATTAACTGATGG 60.735 44.000 0.00 0.00 0.00 3.51
1452 1484 2.090760 TGCGCTGATTTGCCTGATTAA 58.909 42.857 9.73 0.00 0.00 1.40
1453 1485 1.748950 TGCGCTGATTTGCCTGATTA 58.251 45.000 9.73 0.00 0.00 1.75
1458 1490 1.672854 ATGCATGCGCTGATTTGCCT 61.673 50.000 14.09 0.58 39.64 4.75
1459 1491 1.227147 ATGCATGCGCTGATTTGCC 60.227 52.632 14.09 0.00 39.64 4.52
1460 1492 1.924335 CATGCATGCGCTGATTTGC 59.076 52.632 14.93 10.64 39.64 3.68
1650 1698 3.952675 GCACACACGCACACCCAG 61.953 66.667 0.00 0.00 0.00 4.45
1667 1715 5.617187 GCTTAATCGATTTACTGTTCATGCG 59.383 40.000 17.19 0.00 0.00 4.73
1681 1731 4.491676 AGTGTTACACGTGCTTAATCGAT 58.508 39.130 17.22 0.00 39.64 3.59
1683 1733 4.084745 ACAAGTGTTACACGTGCTTAATCG 60.085 41.667 26.19 5.64 45.03 3.34
1693 1743 7.853437 TCATCAAACAAATACAAGTGTTACACG 59.147 33.333 10.00 0.00 39.64 4.49
1749 1801 0.716108 CAAAGCGAGCAAGGTACGAG 59.284 55.000 0.00 0.00 0.00 4.18
1768 1820 7.721399 AGACCCCAGTGATTATGAATTTATGAC 59.279 37.037 0.00 0.00 0.00 3.06
1775 1827 4.047166 TGGAGACCCCAGTGATTATGAAT 58.953 43.478 0.00 0.00 40.82 2.57
1776 1828 3.459828 TGGAGACCCCAGTGATTATGAA 58.540 45.455 0.00 0.00 40.82 2.57
1777 1829 3.129262 TGGAGACCCCAGTGATTATGA 57.871 47.619 0.00 0.00 40.82 2.15
1787 1839 0.413037 AAATGCCATTGGAGACCCCA 59.587 50.000 6.95 0.00 44.93 4.96
1788 1840 1.114627 GAAATGCCATTGGAGACCCC 58.885 55.000 6.95 0.00 0.00 4.95
1791 1843 2.749621 ACGAAGAAATGCCATTGGAGAC 59.250 45.455 6.95 0.00 0.00 3.36
1793 1845 3.855689 AACGAAGAAATGCCATTGGAG 57.144 42.857 6.95 0.00 0.00 3.86
1800 1852 6.844279 CGTAATGTACATAACGAAGAAATGCC 59.156 38.462 9.21 0.00 37.53 4.40
1827 1879 8.615878 ATGAAATAAGCTTGTGTTGTAGTACA 57.384 30.769 9.86 0.00 0.00 2.90
1887 1939 1.806542 AGCTTATTGTGCTGTTCGGTG 59.193 47.619 0.00 0.00 39.56 4.94
1888 1940 2.185004 AGCTTATTGTGCTGTTCGGT 57.815 45.000 0.00 0.00 39.56 4.69
1953 2006 4.101448 AGGACATGGGCCACGAGC 62.101 66.667 9.28 0.00 42.60 5.03
1954 2007 2.124983 CAGGACATGGGCCACGAG 60.125 66.667 9.28 4.34 0.00 4.18
1955 2008 4.408821 GCAGGACATGGGCCACGA 62.409 66.667 9.28 0.00 0.00 4.35
1956 2009 4.720902 TGCAGGACATGGGCCACG 62.721 66.667 9.28 1.55 0.00 4.94
1957 2010 2.753043 CTGCAGGACATGGGCCAC 60.753 66.667 9.28 0.00 0.00 5.01
1958 2011 2.488771 CTTCTGCAGGACATGGGCCA 62.489 60.000 15.13 9.61 0.00 5.36
1959 2012 1.751927 CTTCTGCAGGACATGGGCC 60.752 63.158 15.13 0.00 0.00 5.80
1960 2013 0.106819 ATCTTCTGCAGGACATGGGC 60.107 55.000 15.13 0.00 0.00 5.36
1972 2025 9.733556 ACCAGACTACATATACTCTATCTTCTG 57.266 37.037 0.00 0.00 0.00 3.02
1982 2035 8.713708 AAAGCTCATACCAGACTACATATACT 57.286 34.615 0.00 0.00 0.00 2.12
2022 2075 5.255687 ACATACAAGTGATGAGCAATCCAA 58.744 37.500 0.00 0.00 34.00 3.53
2032 2085 5.488645 TGCATTGCTACATACAAGTGATG 57.511 39.130 10.49 0.00 0.00 3.07
2036 2089 4.379813 GCACTTGCATTGCTACATACAAGT 60.380 41.667 10.49 6.35 46.26 3.16
2039 2092 2.423185 GGCACTTGCATTGCTACATACA 59.577 45.455 17.66 0.00 44.36 2.29
2047 2100 0.947180 CACCTTGGCACTTGCATTGC 60.947 55.000 11.51 11.51 44.36 3.56
2058 2111 3.259123 AGGAAAATGAATCACACCTTGGC 59.741 43.478 0.00 0.00 0.00 4.52
2118 2171 7.201974 CCATCCTCTTTCATGGCAAATATTTCT 60.202 37.037 0.00 0.00 33.37 2.52
2123 2176 4.217510 CCCATCCTCTTTCATGGCAAATA 58.782 43.478 0.00 0.00 38.67 1.40
2124 2177 3.036091 CCCATCCTCTTTCATGGCAAAT 58.964 45.455 0.00 0.00 38.67 2.32
2139 2192 2.808206 CGTCCCTACCAGCCCATCC 61.808 68.421 0.00 0.00 0.00 3.51
2150 2203 1.027792 GGCCGCAAAATTCGTCCCTA 61.028 55.000 0.00 0.00 0.00 3.53
2156 2209 0.389687 AACATGGGCCGCAAAATTCG 60.390 50.000 0.00 0.00 0.00 3.34
2165 2218 1.499949 CACGTGTAAACATGGGCCG 59.500 57.895 7.58 0.00 37.19 6.13
2166 2219 1.880186 CCACGTGTAAACATGGGCC 59.120 57.895 15.65 0.00 35.01 5.80
2180 2233 1.135972 GTATGCAACAAGTGAGCCACG 60.136 52.381 0.00 0.00 39.64 4.94
2186 2239 6.230472 ACTTGATAGTGTATGCAACAAGTGA 58.770 36.000 18.10 0.00 42.65 3.41
2278 2331 4.715534 TTGGGAGTTGAATGGTGTTAGA 57.284 40.909 0.00 0.00 0.00 2.10
2391 2444 6.040247 TGTTGAATGGAGTGCTATACGTTAG 58.960 40.000 0.00 0.00 0.00 2.34
2396 2449 5.368145 TGGATGTTGAATGGAGTGCTATAC 58.632 41.667 0.00 0.00 0.00 1.47
2402 2455 4.279169 ACAGTTTGGATGTTGAATGGAGTG 59.721 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.