Multiple sequence alignment - TraesCS4D01G359700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G359700 chr4D 100.000 2687 0 0 1 2687 507000781 507003467 0.000000e+00 4963.0
1 TraesCS4D01G359700 chr4D 89.734 263 27 0 111 373 101499094 101498832 1.190000e-88 337.0
2 TraesCS4D01G359700 chr5A 92.546 1033 58 5 1667 2684 703472547 703473575 0.000000e+00 1463.0
3 TraesCS4D01G359700 chr5A 92.308 624 48 0 992 1615 703471921 703472544 0.000000e+00 887.0
4 TraesCS4D01G359700 chr5A 92.683 328 23 1 665 991 703471009 703471336 3.130000e-129 472.0
5 TraesCS4D01G359700 chr5A 93.421 76 5 0 373 448 394262734 394262809 2.190000e-21 113.0
6 TraesCS4D01G359700 chr4B 84.818 1100 142 13 992 2073 663902837 663903929 0.000000e+00 1083.0
7 TraesCS4D01G359700 chr4B 84.559 1101 146 15 992 2073 664678538 664679633 0.000000e+00 1070.0
8 TraesCS4D01G359700 chr4B 79.374 703 103 24 1841 2524 664679642 664680321 8.770000e-125 457.0
9 TraesCS4D01G359700 chr4B 85.629 334 44 3 118 448 604540983 604541315 5.510000e-92 348.0
10 TraesCS4D01G359700 chr4B 89.734 263 27 0 111 373 814406 814144 1.190000e-88 337.0
11 TraesCS4D01G359700 chr4B 91.213 239 20 1 760 997 663902021 663902259 9.280000e-85 324.0
12 TraesCS4D01G359700 chr4B 90.795 239 21 1 760 997 664677722 664677960 4.320000e-83 318.0
13 TraesCS4D01G359700 chr4B 91.667 84 3 3 1 80 663901577 663901660 2.190000e-21 113.0
14 TraesCS4D01G359700 chrUn 79.630 648 130 2 1010 1656 28411228 28410582 5.240000e-127 464.0
15 TraesCS4D01G359700 chr5B 90.421 261 24 1 114 373 618270155 618269895 2.560000e-90 342.0
16 TraesCS4D01G359700 chr5B 88.462 78 6 3 371 447 551229127 551229202 1.020000e-14 91.6
17 TraesCS4D01G359700 chr3B 89.734 263 27 0 111 373 191186849 191186587 1.190000e-88 337.0
18 TraesCS4D01G359700 chr3B 83.486 327 49 4 122 446 462854830 462854507 1.560000e-77 300.0
19 TraesCS4D01G359700 chr1B 89.734 263 27 0 111 373 458384042 458384304 1.190000e-88 337.0
20 TraesCS4D01G359700 chr4A 84.802 329 40 7 118 446 654861661 654861343 3.340000e-84 322.0
21 TraesCS4D01G359700 chr6B 83.086 337 47 6 111 447 395358188 395358514 5.620000e-77 298.0
22 TraesCS4D01G359700 chr3A 91.358 81 6 1 371 450 733498511 733498431 2.830000e-20 110.0
23 TraesCS4D01G359700 chr2B 89.744 78 7 1 371 448 281930267 281930191 6.120000e-17 99.0
24 TraesCS4D01G359700 chr7B 88.608 79 9 0 371 449 17835978 17836056 2.200000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G359700 chr4D 507000781 507003467 2686 False 4963.000000 4963 100.000000 1 2687 1 chr4D.!!$F1 2686
1 TraesCS4D01G359700 chr5A 703471009 703473575 2566 False 940.666667 1463 92.512333 665 2684 3 chr5A.!!$F2 2019
2 TraesCS4D01G359700 chr4B 664677722 664680321 2599 False 615.000000 1070 84.909333 760 2524 3 chr4B.!!$F3 1764
3 TraesCS4D01G359700 chr4B 663901577 663903929 2352 False 506.666667 1083 89.232667 1 2073 3 chr4B.!!$F2 2072
4 TraesCS4D01G359700 chrUn 28410582 28411228 646 True 464.000000 464 79.630000 1010 1656 1 chrUn.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 394 0.031043 CGTGTGTACGTTCACAGGGA 59.969 55.0 29.21 9.02 46.77 4.20 F
499 537 0.033208 GCCCATCCCACCAATCAAGA 60.033 55.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 2301 0.250640 ATTGCATGATCTCCTCCGCC 60.251 55.000 0.00 0.00 0.0 6.13 R
1769 2407 1.140161 GTACATCGTACTGCCGGCA 59.860 57.895 30.59 30.59 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.578206 GGGAAGAAGGCGTCTGTTGC 61.578 60.000 3.07 0.00 36.40 4.17
32 37 0.179045 AGAAGGCGTCTGTTGCACTT 60.179 50.000 1.04 0.00 34.29 3.16
40 45 2.158449 CGTCTGTTGCACTTCTTGGATC 59.842 50.000 0.00 0.00 0.00 3.36
51 56 6.054295 GCACTTCTTGGATCTGAGTTGATAT 58.946 40.000 0.00 0.00 0.00 1.63
85 123 4.116961 GAGGTTGCACGTATATTACTGCA 58.883 43.478 0.00 7.33 39.37 4.41
93 131 4.743151 CACGTATATTACTGCACGGTGATT 59.257 41.667 13.29 0.00 38.67 2.57
99 137 1.144969 ACTGCACGGTGATTGTTACG 58.855 50.000 13.29 0.00 0.00 3.18
109 147 3.054878 GTGATTGTTACGAGTCGTGGTT 58.945 45.455 27.85 8.16 41.39 3.67
112 150 4.681025 TGATTGTTACGAGTCGTGGTTAAC 59.319 41.667 27.85 22.19 41.39 2.01
113 151 3.011949 TGTTACGAGTCGTGGTTAACC 57.988 47.619 27.85 18.27 41.39 2.85
114 152 2.360483 TGTTACGAGTCGTGGTTAACCA 59.640 45.455 27.85 23.69 45.30 3.67
126 164 1.201414 GGTTAACCAATCTGCGGTTGG 59.799 52.381 20.12 19.34 46.27 3.77
132 170 1.176527 CAATCTGCGGTTGGATGGTT 58.823 50.000 0.00 0.00 0.00 3.67
133 171 2.364632 CAATCTGCGGTTGGATGGTTA 58.635 47.619 0.00 0.00 0.00 2.85
134 172 2.332063 ATCTGCGGTTGGATGGTTAG 57.668 50.000 0.00 0.00 0.00 2.34
135 173 1.271856 TCTGCGGTTGGATGGTTAGA 58.728 50.000 0.00 0.00 0.00 2.10
136 174 1.207089 TCTGCGGTTGGATGGTTAGAG 59.793 52.381 0.00 0.00 0.00 2.43
137 175 0.251916 TGCGGTTGGATGGTTAGAGG 59.748 55.000 0.00 0.00 0.00 3.69
140 178 1.134491 CGGTTGGATGGTTAGAGGGAC 60.134 57.143 0.00 0.00 0.00 4.46
142 180 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
145 183 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
146 184 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
147 185 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
148 186 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
149 187 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
150 188 3.012502 TGGTTAGAGGGACTGTGGTATCT 59.987 47.826 0.00 0.00 41.55 1.98
151 189 4.031611 GGTTAGAGGGACTGTGGTATCTT 58.968 47.826 0.00 0.00 41.55 2.40
152 190 4.099727 GGTTAGAGGGACTGTGGTATCTTC 59.900 50.000 0.00 0.00 41.55 2.87
153 191 3.474798 AGAGGGACTGTGGTATCTTCA 57.525 47.619 0.00 0.00 41.55 3.02
154 192 3.370104 AGAGGGACTGTGGTATCTTCAG 58.630 50.000 0.00 0.00 41.55 3.02
155 193 1.834263 AGGGACTGTGGTATCTTCAGC 59.166 52.381 0.00 0.00 37.18 4.26
156 194 1.134371 GGGACTGTGGTATCTTCAGCC 60.134 57.143 0.00 0.00 33.12 4.85
157 195 1.134371 GGACTGTGGTATCTTCAGCCC 60.134 57.143 0.00 0.00 33.12 5.19
158 196 1.555075 GACTGTGGTATCTTCAGCCCA 59.445 52.381 0.00 0.00 33.12 5.36
160 198 2.171448 ACTGTGGTATCTTCAGCCCATC 59.829 50.000 0.00 0.00 33.12 3.51
162 200 2.171237 TGTGGTATCTTCAGCCCATCAG 59.829 50.000 0.00 0.00 0.00 2.90
163 201 1.770658 TGGTATCTTCAGCCCATCAGG 59.229 52.381 0.00 0.00 39.47 3.86
178 216 5.329035 CCATCAGGGTTTAAATTCTGGTG 57.671 43.478 18.98 18.98 37.90 4.17
179 217 4.381932 CCATCAGGGTTTAAATTCTGGTGC 60.382 45.833 19.86 0.00 37.12 5.01
182 220 4.280677 TCAGGGTTTAAATTCTGGTGCTTG 59.719 41.667 15.87 0.00 0.00 4.01
184 222 3.244044 GGGTTTAAATTCTGGTGCTTGCA 60.244 43.478 0.00 0.00 0.00 4.08
185 223 4.563374 GGGTTTAAATTCTGGTGCTTGCAT 60.563 41.667 0.00 0.00 0.00 3.96
187 225 5.469760 GGTTTAAATTCTGGTGCTTGCATTT 59.530 36.000 0.00 0.00 0.00 2.32
189 227 7.334171 GGTTTAAATTCTGGTGCTTGCATTTAT 59.666 33.333 0.00 0.00 0.00 1.40
190 228 8.720562 GTTTAAATTCTGGTGCTTGCATTTATT 58.279 29.630 0.00 0.00 0.00 1.40
191 229 6.973229 AAATTCTGGTGCTTGCATTTATTC 57.027 33.333 0.00 0.00 0.00 1.75
192 230 4.454728 TTCTGGTGCTTGCATTTATTCC 57.545 40.909 0.00 0.00 0.00 3.01
193 231 3.700538 TCTGGTGCTTGCATTTATTCCT 58.299 40.909 0.00 0.00 0.00 3.36
194 232 3.444742 TCTGGTGCTTGCATTTATTCCTG 59.555 43.478 0.00 0.00 0.00 3.86
195 233 3.429492 TGGTGCTTGCATTTATTCCTGA 58.571 40.909 0.00 0.00 0.00 3.86
196 234 3.831333 TGGTGCTTGCATTTATTCCTGAA 59.169 39.130 0.00 0.00 0.00 3.02
198 236 5.046448 TGGTGCTTGCATTTATTCCTGAATT 60.046 36.000 0.00 0.00 32.50 2.17
199 237 5.876460 GGTGCTTGCATTTATTCCTGAATTT 59.124 36.000 0.00 0.00 32.50 1.82
202 240 9.101655 GTGCTTGCATTTATTCCTGAATTTATT 57.898 29.630 0.00 0.00 32.50 1.40
203 241 9.669887 TGCTTGCATTTATTCCTGAATTTATTT 57.330 25.926 0.00 0.00 32.50 1.40
216 254 9.581099 TCCTGAATTTATTTTAAGATTTTCGGC 57.419 29.630 0.00 0.00 0.00 5.54
217 255 8.531530 CCTGAATTTATTTTAAGATTTTCGGCG 58.468 33.333 0.00 0.00 0.00 6.46
218 256 9.284594 CTGAATTTATTTTAAGATTTTCGGCGA 57.715 29.630 4.99 4.99 0.00 5.54
219 257 9.796120 TGAATTTATTTTAAGATTTTCGGCGAT 57.204 25.926 11.76 0.00 0.00 4.58
221 259 7.444558 TTTATTTTAAGATTTTCGGCGATGC 57.555 32.000 11.76 0.11 0.00 3.91
222 260 2.730183 TTAAGATTTTCGGCGATGCG 57.270 45.000 11.76 0.00 0.00 4.73
233 271 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
234 272 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
235 273 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
236 274 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
237 275 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
238 276 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
239 277 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
240 278 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
241 279 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
242 280 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
243 281 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
244 282 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
245 283 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
246 284 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
247 285 0.471211 AGTGGGAGGAGACGTTTCCA 60.471 55.000 25.51 4.24 39.84 3.53
248 286 0.613777 GTGGGAGGAGACGTTTCCAT 59.386 55.000 25.51 11.65 39.84 3.41
249 287 1.003233 GTGGGAGGAGACGTTTCCATT 59.997 52.381 25.51 7.24 39.84 3.16
250 288 1.003118 TGGGAGGAGACGTTTCCATTG 59.997 52.381 25.51 0.00 39.84 2.82
251 289 1.278127 GGGAGGAGACGTTTCCATTGA 59.722 52.381 25.51 0.00 39.84 2.57
252 290 2.347731 GGAGGAGACGTTTCCATTGAC 58.652 52.381 25.51 11.46 39.84 3.18
253 291 1.993370 GAGGAGACGTTTCCATTGACG 59.007 52.381 25.51 0.00 44.34 4.35
254 292 1.616865 AGGAGACGTTTCCATTGACGA 59.383 47.619 25.51 0.00 41.53 4.20
255 293 2.233922 AGGAGACGTTTCCATTGACGAT 59.766 45.455 25.51 0.73 41.53 3.73
256 294 2.348666 GGAGACGTTTCCATTGACGATG 59.651 50.000 19.71 0.00 41.53 3.84
257 295 3.250744 GAGACGTTTCCATTGACGATGA 58.749 45.455 4.07 0.00 41.53 2.92
258 296 3.254060 AGACGTTTCCATTGACGATGAG 58.746 45.455 4.07 0.00 41.53 2.90
259 297 2.346803 ACGTTTCCATTGACGATGAGG 58.653 47.619 4.07 0.00 41.53 3.86
260 298 2.289444 ACGTTTCCATTGACGATGAGGT 60.289 45.455 4.07 0.00 41.53 3.85
261 299 2.094258 CGTTTCCATTGACGATGAGGTG 59.906 50.000 4.07 0.00 41.53 4.00
262 300 1.737838 TTCCATTGACGATGAGGTGC 58.262 50.000 4.07 0.00 38.03 5.01
263 301 0.107703 TCCATTGACGATGAGGTGCC 60.108 55.000 4.07 0.00 38.03 5.01
264 302 0.107508 CCATTGACGATGAGGTGCCT 60.108 55.000 4.07 0.00 38.03 4.75
265 303 1.138859 CCATTGACGATGAGGTGCCTA 59.861 52.381 4.07 0.00 38.03 3.93
266 304 2.205074 CATTGACGATGAGGTGCCTAC 58.795 52.381 0.00 0.00 38.03 3.18
267 305 0.172578 TTGACGATGAGGTGCCTACG 59.827 55.000 0.00 9.22 0.00 3.51
268 306 0.678684 TGACGATGAGGTGCCTACGA 60.679 55.000 14.90 0.00 0.00 3.43
269 307 0.669077 GACGATGAGGTGCCTACGAT 59.331 55.000 14.90 0.00 0.00 3.73
270 308 0.385751 ACGATGAGGTGCCTACGATG 59.614 55.000 14.90 0.00 0.00 3.84
271 309 0.668535 CGATGAGGTGCCTACGATGA 59.331 55.000 0.00 0.00 0.00 2.92
272 310 1.600663 CGATGAGGTGCCTACGATGAC 60.601 57.143 0.00 0.00 0.00 3.06
273 311 1.683917 GATGAGGTGCCTACGATGACT 59.316 52.381 0.00 0.00 0.00 3.41
274 312 1.557099 TGAGGTGCCTACGATGACTT 58.443 50.000 0.00 0.00 0.00 3.01
275 313 1.899814 TGAGGTGCCTACGATGACTTT 59.100 47.619 0.00 0.00 0.00 2.66
276 314 3.093814 TGAGGTGCCTACGATGACTTTA 58.906 45.455 0.00 0.00 0.00 1.85
277 315 3.704566 TGAGGTGCCTACGATGACTTTAT 59.295 43.478 0.00 0.00 0.00 1.40
278 316 4.891168 TGAGGTGCCTACGATGACTTTATA 59.109 41.667 0.00 0.00 0.00 0.98
279 317 5.361571 TGAGGTGCCTACGATGACTTTATAA 59.638 40.000 0.00 0.00 0.00 0.98
280 318 6.127281 TGAGGTGCCTACGATGACTTTATAAA 60.127 38.462 0.00 0.00 0.00 1.40
281 319 6.827727 AGGTGCCTACGATGACTTTATAAAT 58.172 36.000 0.00 0.00 0.00 1.40
282 320 7.280356 AGGTGCCTACGATGACTTTATAAATT 58.720 34.615 0.00 0.00 0.00 1.82
283 321 7.773690 AGGTGCCTACGATGACTTTATAAATTT 59.226 33.333 0.00 0.00 0.00 1.82
284 322 8.068380 GGTGCCTACGATGACTTTATAAATTTC 58.932 37.037 0.00 0.00 0.00 2.17
285 323 8.609176 GTGCCTACGATGACTTTATAAATTTCA 58.391 33.333 10.52 10.52 0.00 2.69
286 324 9.168451 TGCCTACGATGACTTTATAAATTTCAA 57.832 29.630 11.65 0.00 0.00 2.69
287 325 9.651718 GCCTACGATGACTTTATAAATTTCAAG 57.348 33.333 11.65 11.14 0.00 3.02
300 338 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
301 339 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
302 340 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
303 341 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
304 342 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
305 343 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
306 344 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
307 345 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
308 346 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
309 347 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
310 348 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
311 349 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
312 350 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
313 351 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
314 352 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
315 353 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
316 354 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
317 355 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
318 356 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
319 357 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
320 358 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
321 359 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
322 360 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
323 361 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
324 362 2.832129 AGTCTTTCGGAGGTGCTCATAA 59.168 45.455 0.00 0.00 31.08 1.90
325 363 3.260884 AGTCTTTCGGAGGTGCTCATAAA 59.739 43.478 0.00 0.00 31.08 1.40
326 364 3.619038 GTCTTTCGGAGGTGCTCATAAAG 59.381 47.826 0.00 0.00 36.24 1.85
327 365 3.513912 TCTTTCGGAGGTGCTCATAAAGA 59.486 43.478 0.00 0.00 38.84 2.52
328 366 4.162320 TCTTTCGGAGGTGCTCATAAAGAT 59.838 41.667 0.00 0.00 37.60 2.40
329 367 5.362717 TCTTTCGGAGGTGCTCATAAAGATA 59.637 40.000 0.00 0.00 37.60 1.98
330 368 4.855715 TCGGAGGTGCTCATAAAGATAG 57.144 45.455 0.00 0.00 31.08 2.08
331 369 3.574396 TCGGAGGTGCTCATAAAGATAGG 59.426 47.826 0.00 0.00 31.08 2.57
332 370 3.574396 CGGAGGTGCTCATAAAGATAGGA 59.426 47.826 0.00 0.00 31.08 2.94
333 371 4.221703 CGGAGGTGCTCATAAAGATAGGAT 59.778 45.833 0.00 0.00 31.08 3.24
334 372 5.486526 GGAGGTGCTCATAAAGATAGGATG 58.513 45.833 0.00 0.00 31.08 3.51
335 373 5.012561 GGAGGTGCTCATAAAGATAGGATGT 59.987 44.000 0.00 0.00 31.08 3.06
336 374 5.862845 AGGTGCTCATAAAGATAGGATGTG 58.137 41.667 0.00 0.00 0.00 3.21
337 375 4.453819 GGTGCTCATAAAGATAGGATGTGC 59.546 45.833 0.00 0.00 39.41 4.57
338 376 4.151335 GTGCTCATAAAGATAGGATGTGCG 59.849 45.833 0.00 0.00 40.98 5.34
339 377 4.202253 TGCTCATAAAGATAGGATGTGCGT 60.202 41.667 0.00 0.00 40.98 5.24
340 378 4.151335 GCTCATAAAGATAGGATGTGCGTG 59.849 45.833 0.00 0.00 32.41 5.34
341 379 5.276461 TCATAAAGATAGGATGTGCGTGT 57.724 39.130 0.00 0.00 0.00 4.49
342 380 5.049828 TCATAAAGATAGGATGTGCGTGTG 58.950 41.667 0.00 0.00 0.00 3.82
343 381 3.334583 AAAGATAGGATGTGCGTGTGT 57.665 42.857 0.00 0.00 0.00 3.72
344 382 4.465632 AAAGATAGGATGTGCGTGTGTA 57.534 40.909 0.00 0.00 0.00 2.90
345 383 3.438297 AGATAGGATGTGCGTGTGTAC 57.562 47.619 0.00 0.00 0.00 2.90
355 393 2.513159 CGTGTGTACGTTCACAGGG 58.487 57.895 29.21 20.21 46.77 4.45
356 394 0.031043 CGTGTGTACGTTCACAGGGA 59.969 55.000 29.21 9.02 46.77 4.20
357 395 1.336517 CGTGTGTACGTTCACAGGGAT 60.337 52.381 29.21 0.00 46.77 3.85
358 396 2.066262 GTGTGTACGTTCACAGGGATG 58.934 52.381 25.74 0.00 46.77 3.51
359 397 1.964933 TGTGTACGTTCACAGGGATGA 59.035 47.619 22.15 0.00 42.36 2.92
360 398 2.365941 TGTGTACGTTCACAGGGATGAA 59.634 45.455 22.15 0.00 42.36 2.57
361 399 3.007506 TGTGTACGTTCACAGGGATGAAT 59.992 43.478 22.15 0.00 42.36 2.57
362 400 3.370978 GTGTACGTTCACAGGGATGAATG 59.629 47.826 19.03 6.24 46.66 2.67
366 404 4.801147 CGTTCACAGGGATGAATGTATG 57.199 45.455 0.50 0.00 40.60 2.39
367 405 3.002656 CGTTCACAGGGATGAATGTATGC 59.997 47.826 0.50 0.00 40.60 3.14
368 406 2.837498 TCACAGGGATGAATGTATGCG 58.163 47.619 0.00 0.00 0.00 4.73
369 407 1.265095 CACAGGGATGAATGTATGCGC 59.735 52.381 0.00 0.00 0.00 6.09
370 408 0.514255 CAGGGATGAATGTATGCGCG 59.486 55.000 0.00 0.00 0.00 6.86
371 409 0.106708 AGGGATGAATGTATGCGCGT 59.893 50.000 8.43 7.55 0.00 6.01
372 410 0.235665 GGGATGAATGTATGCGCGTG 59.764 55.000 13.61 0.00 0.00 5.34
373 411 0.384725 GGATGAATGTATGCGCGTGC 60.385 55.000 15.48 15.48 43.20 5.34
391 429 2.513159 CGTGTGTACGTTCACAGGG 58.487 57.895 29.21 20.21 46.77 4.45
392 430 0.031043 CGTGTGTACGTTCACAGGGA 59.969 55.000 29.21 9.02 46.77 4.20
393 431 1.336517 CGTGTGTACGTTCACAGGGAT 60.337 52.381 29.21 0.00 46.77 3.85
394 432 2.066262 GTGTGTACGTTCACAGGGATG 58.934 52.381 25.74 0.00 46.77 3.51
395 433 1.964933 TGTGTACGTTCACAGGGATGA 59.035 47.619 22.15 0.00 42.36 2.92
396 434 2.365941 TGTGTACGTTCACAGGGATGAA 59.634 45.455 22.15 0.00 42.36 2.57
397 435 3.007506 TGTGTACGTTCACAGGGATGAAT 59.992 43.478 22.15 0.00 42.36 2.57
398 436 3.370978 GTGTACGTTCACAGGGATGAATG 59.629 47.826 19.03 6.24 46.66 2.67
402 440 4.801147 CGTTCACAGGGATGAATGTATG 57.199 45.455 0.50 0.00 40.60 2.39
403 441 3.002656 CGTTCACAGGGATGAATGTATGC 59.997 47.826 0.50 0.00 40.60 3.14
404 442 2.837498 TCACAGGGATGAATGTATGCG 58.163 47.619 0.00 0.00 0.00 4.73
405 443 1.265095 CACAGGGATGAATGTATGCGC 59.735 52.381 0.00 0.00 0.00 6.09
406 444 0.514255 CAGGGATGAATGTATGCGCG 59.486 55.000 0.00 0.00 0.00 6.86
407 445 0.106708 AGGGATGAATGTATGCGCGT 59.893 50.000 8.43 7.55 0.00 6.01
408 446 0.235665 GGGATGAATGTATGCGCGTG 59.764 55.000 13.61 0.00 0.00 5.34
409 447 0.937304 GGATGAATGTATGCGCGTGT 59.063 50.000 13.61 0.00 0.00 4.49
410 448 2.131972 GGATGAATGTATGCGCGTGTA 58.868 47.619 13.61 0.62 0.00 2.90
411 449 2.736721 GGATGAATGTATGCGCGTGTAT 59.263 45.455 13.61 4.63 0.00 2.29
412 450 3.423515 GGATGAATGTATGCGCGTGTATG 60.424 47.826 13.61 0.00 0.00 2.39
413 451 2.545731 TGAATGTATGCGCGTGTATGT 58.454 42.857 13.61 0.00 0.00 2.29
414 452 2.283884 TGAATGTATGCGCGTGTATGTG 59.716 45.455 13.61 0.00 0.00 3.21
415 453 2.217429 ATGTATGCGCGTGTATGTGA 57.783 45.000 13.61 0.00 0.00 3.58
416 454 1.555477 TGTATGCGCGTGTATGTGAG 58.445 50.000 13.61 0.00 0.00 3.51
417 455 0.229753 GTATGCGCGTGTATGTGAGC 59.770 55.000 13.61 0.00 0.00 4.26
420 458 2.880879 CGCGTGTATGTGAGCGCT 60.881 61.111 11.27 11.27 46.56 5.92
421 459 2.444624 CGCGTGTATGTGAGCGCTT 61.445 57.895 13.26 0.00 46.56 4.68
422 460 1.059369 GCGTGTATGTGAGCGCTTG 59.941 57.895 13.26 0.00 45.48 4.01
423 461 1.626654 GCGTGTATGTGAGCGCTTGT 61.627 55.000 13.26 0.12 45.48 3.16
424 462 0.093535 CGTGTATGTGAGCGCTTGTG 59.906 55.000 13.26 0.00 0.00 3.33
425 463 1.148310 GTGTATGTGAGCGCTTGTGT 58.852 50.000 13.26 0.94 0.00 3.72
426 464 1.126846 GTGTATGTGAGCGCTTGTGTC 59.873 52.381 13.26 0.00 0.00 3.67
427 465 1.000843 TGTATGTGAGCGCTTGTGTCT 59.999 47.619 13.26 0.00 0.00 3.41
428 466 1.391485 GTATGTGAGCGCTTGTGTCTG 59.609 52.381 13.26 0.00 0.00 3.51
429 467 0.250038 ATGTGAGCGCTTGTGTCTGT 60.250 50.000 13.26 0.00 0.00 3.41
430 468 0.387565 TGTGAGCGCTTGTGTCTGTA 59.612 50.000 13.26 0.00 0.00 2.74
431 469 0.784778 GTGAGCGCTTGTGTCTGTAC 59.215 55.000 13.26 0.00 0.00 2.90
432 470 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
433 471 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
434 472 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
435 473 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
436 474 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
437 475 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
438 476 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
439 477 3.494626 CGCTTGTGTCTGTACTGATGTTT 59.505 43.478 5.69 0.00 0.00 2.83
440 478 4.684242 CGCTTGTGTCTGTACTGATGTTTA 59.316 41.667 5.69 0.00 0.00 2.01
441 479 5.176774 CGCTTGTGTCTGTACTGATGTTTAA 59.823 40.000 5.69 0.00 0.00 1.52
442 480 6.292649 CGCTTGTGTCTGTACTGATGTTTAAA 60.293 38.462 5.69 0.00 0.00 1.52
443 481 7.414436 GCTTGTGTCTGTACTGATGTTTAAAA 58.586 34.615 5.69 0.00 0.00 1.52
444 482 7.913297 GCTTGTGTCTGTACTGATGTTTAAAAA 59.087 33.333 5.69 0.00 0.00 1.94
463 501 2.271821 AAAAACGCGGCCATACATTC 57.728 45.000 12.47 0.00 0.00 2.67
464 502 0.098025 AAAACGCGGCCATACATTCG 59.902 50.000 12.47 0.00 0.00 3.34
465 503 2.317685 AAACGCGGCCATACATTCGC 62.318 55.000 12.47 0.00 44.04 4.70
466 504 4.012895 CGCGGCCATACATTCGCC 62.013 66.667 2.24 0.00 44.56 5.54
467 505 3.660111 GCGGCCATACATTCGCCC 61.660 66.667 2.24 0.00 42.02 6.13
468 506 2.111043 CGGCCATACATTCGCCCT 59.889 61.111 2.24 0.00 39.66 5.19
469 507 1.961277 CGGCCATACATTCGCCCTC 60.961 63.158 2.24 0.00 39.66 4.30
470 508 1.600916 GGCCATACATTCGCCCTCC 60.601 63.158 0.00 0.00 36.63 4.30
471 509 1.600916 GCCATACATTCGCCCTCCC 60.601 63.158 0.00 0.00 0.00 4.30
472 510 1.836391 CCATACATTCGCCCTCCCA 59.164 57.895 0.00 0.00 0.00 4.37
473 511 0.182537 CCATACATTCGCCCTCCCAA 59.817 55.000 0.00 0.00 0.00 4.12
474 512 1.202927 CCATACATTCGCCCTCCCAAT 60.203 52.381 0.00 0.00 0.00 3.16
475 513 2.154462 CATACATTCGCCCTCCCAATC 58.846 52.381 0.00 0.00 0.00 2.67
476 514 1.208706 TACATTCGCCCTCCCAATCA 58.791 50.000 0.00 0.00 0.00 2.57
477 515 0.331278 ACATTCGCCCTCCCAATCAA 59.669 50.000 0.00 0.00 0.00 2.57
478 516 1.272425 ACATTCGCCCTCCCAATCAAA 60.272 47.619 0.00 0.00 0.00 2.69
479 517 1.134946 CATTCGCCCTCCCAATCAAAC 59.865 52.381 0.00 0.00 0.00 2.93
480 518 0.958382 TTCGCCCTCCCAATCAAACG 60.958 55.000 0.00 0.00 0.00 3.60
481 519 2.885113 GCCCTCCCAATCAAACGC 59.115 61.111 0.00 0.00 0.00 4.84
482 520 2.710902 GCCCTCCCAATCAAACGCC 61.711 63.158 0.00 0.00 0.00 5.68
483 521 2.052104 CCCTCCCAATCAAACGCCC 61.052 63.158 0.00 0.00 0.00 6.13
484 522 1.304052 CCTCCCAATCAAACGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
485 523 0.684153 CCTCCCAATCAAACGCCCAT 60.684 55.000 0.00 0.00 0.00 4.00
486 524 0.740737 CTCCCAATCAAACGCCCATC 59.259 55.000 0.00 0.00 0.00 3.51
487 525 0.682855 TCCCAATCAAACGCCCATCC 60.683 55.000 0.00 0.00 0.00 3.51
488 526 1.675720 CCCAATCAAACGCCCATCCC 61.676 60.000 0.00 0.00 0.00 3.85
489 527 0.969917 CCAATCAAACGCCCATCCCA 60.970 55.000 0.00 0.00 0.00 4.37
490 528 0.173255 CAATCAAACGCCCATCCCAC 59.827 55.000 0.00 0.00 0.00 4.61
491 529 0.970427 AATCAAACGCCCATCCCACC 60.970 55.000 0.00 0.00 0.00 4.61
492 530 2.148723 ATCAAACGCCCATCCCACCA 62.149 55.000 0.00 0.00 0.00 4.17
493 531 1.905843 CAAACGCCCATCCCACCAA 60.906 57.895 0.00 0.00 0.00 3.67
494 532 1.078347 AAACGCCCATCCCACCAAT 59.922 52.632 0.00 0.00 0.00 3.16
495 533 0.970427 AAACGCCCATCCCACCAATC 60.970 55.000 0.00 0.00 0.00 2.67
496 534 2.148723 AACGCCCATCCCACCAATCA 62.149 55.000 0.00 0.00 0.00 2.57
497 535 1.379710 CGCCCATCCCACCAATCAA 60.380 57.895 0.00 0.00 0.00 2.57
498 536 1.386525 CGCCCATCCCACCAATCAAG 61.387 60.000 0.00 0.00 0.00 3.02
499 537 0.033208 GCCCATCCCACCAATCAAGA 60.033 55.000 0.00 0.00 0.00 3.02
500 538 2.025863 GCCCATCCCACCAATCAAGAG 61.026 57.143 0.00 0.00 0.00 2.85
501 539 1.396653 CCATCCCACCAATCAAGAGC 58.603 55.000 0.00 0.00 0.00 4.09
502 540 1.019673 CATCCCACCAATCAAGAGCG 58.980 55.000 0.00 0.00 0.00 5.03
503 541 0.107017 ATCCCACCAATCAAGAGCGG 60.107 55.000 0.00 0.00 0.00 5.52
504 542 1.002134 CCCACCAATCAAGAGCGGT 60.002 57.895 0.00 0.00 0.00 5.68
505 543 1.308069 CCCACCAATCAAGAGCGGTG 61.308 60.000 11.71 11.71 46.93 4.94
506 544 2.174334 CACCAATCAAGAGCGGTGG 58.826 57.895 11.09 0.00 44.26 4.61
507 545 0.606401 CACCAATCAAGAGCGGTGGT 60.606 55.000 11.09 0.00 44.26 4.16
508 546 0.981183 ACCAATCAAGAGCGGTGGTA 59.019 50.000 0.00 0.00 40.80 3.25
509 547 1.066143 ACCAATCAAGAGCGGTGGTAG 60.066 52.381 0.00 0.00 40.80 3.18
510 548 1.066143 CCAATCAAGAGCGGTGGTAGT 60.066 52.381 0.00 0.00 0.00 2.73
511 549 2.167693 CCAATCAAGAGCGGTGGTAGTA 59.832 50.000 0.00 0.00 0.00 1.82
512 550 3.448686 CAATCAAGAGCGGTGGTAGTAG 58.551 50.000 0.00 0.00 0.00 2.57
513 551 2.211250 TCAAGAGCGGTGGTAGTAGT 57.789 50.000 0.00 0.00 0.00 2.73
514 552 3.354948 TCAAGAGCGGTGGTAGTAGTA 57.645 47.619 0.00 0.00 0.00 1.82
515 553 3.012518 TCAAGAGCGGTGGTAGTAGTAC 58.987 50.000 0.00 0.00 0.00 2.73
516 554 2.751259 CAAGAGCGGTGGTAGTAGTACA 59.249 50.000 9.89 0.00 0.00 2.90
517 555 3.294038 AGAGCGGTGGTAGTAGTACAT 57.706 47.619 9.89 0.00 0.00 2.29
518 556 3.212685 AGAGCGGTGGTAGTAGTACATC 58.787 50.000 9.89 2.17 0.00 3.06
519 557 3.117963 AGAGCGGTGGTAGTAGTACATCT 60.118 47.826 9.89 0.00 0.00 2.90
520 558 4.102210 AGAGCGGTGGTAGTAGTACATCTA 59.898 45.833 9.89 0.00 0.00 1.98
521 559 4.133078 AGCGGTGGTAGTAGTACATCTAC 58.867 47.826 9.89 14.84 46.68 2.59
537 575 2.789208 TCTACAGATCGGTTAAACGCG 58.211 47.619 8.36 3.53 0.00 6.01
540 578 1.812507 AGATCGGTTAAACGCGGCC 60.813 57.895 12.47 0.00 0.00 6.13
544 582 3.129502 GGTTAAACGCGGCCTCCC 61.130 66.667 12.47 0.04 0.00 4.30
557 595 3.450115 CTCCCTCCCACGTCCGTC 61.450 72.222 0.00 0.00 0.00 4.79
572 617 4.409570 CGTCCGTCGTCCCATATATAAAG 58.590 47.826 0.00 0.00 34.52 1.85
578 623 5.566032 CGTCGTCCCATATATAAAGCCTTCA 60.566 44.000 0.00 0.00 0.00 3.02
592 637 1.221840 CTTCACACATCCCCTCCGG 59.778 63.158 0.00 0.00 0.00 5.14
593 638 2.876368 CTTCACACATCCCCTCCGGC 62.876 65.000 0.00 0.00 0.00 6.13
594 639 4.489771 CACACATCCCCTCCGGCC 62.490 72.222 0.00 0.00 0.00 6.13
602 647 4.996434 CCCTCCGGCCGCATCATC 62.996 72.222 22.85 0.00 0.00 2.92
603 648 4.240103 CCTCCGGCCGCATCATCA 62.240 66.667 22.85 0.00 0.00 3.07
604 649 2.969238 CTCCGGCCGCATCATCAC 60.969 66.667 22.85 0.00 0.00 3.06
605 650 3.738429 CTCCGGCCGCATCATCACA 62.738 63.158 22.85 0.00 0.00 3.58
606 651 3.274586 CCGGCCGCATCATCACAG 61.275 66.667 22.85 0.00 0.00 3.66
607 652 2.202919 CGGCCGCATCATCACAGA 60.203 61.111 14.67 0.00 0.00 3.41
608 653 2.242572 CGGCCGCATCATCACAGAG 61.243 63.158 14.67 0.00 0.00 3.35
610 655 1.816679 GCCGCATCATCACAGAGCA 60.817 57.895 0.00 0.00 0.00 4.26
611 656 2.012237 CCGCATCATCACAGAGCAC 58.988 57.895 0.00 0.00 0.00 4.40
612 657 0.741927 CCGCATCATCACAGAGCACA 60.742 55.000 0.00 0.00 0.00 4.57
613 658 1.081094 CGCATCATCACAGAGCACAA 58.919 50.000 0.00 0.00 0.00 3.33
614 659 1.062148 CGCATCATCACAGAGCACAAG 59.938 52.381 0.00 0.00 0.00 3.16
615 660 2.353323 GCATCATCACAGAGCACAAGA 58.647 47.619 0.00 0.00 0.00 3.02
616 661 2.095532 GCATCATCACAGAGCACAAGAC 59.904 50.000 0.00 0.00 0.00 3.01
617 662 2.070262 TCATCACAGAGCACAAGACG 57.930 50.000 0.00 0.00 0.00 4.18
618 663 1.341209 TCATCACAGAGCACAAGACGT 59.659 47.619 0.00 0.00 0.00 4.34
619 664 1.723542 CATCACAGAGCACAAGACGTC 59.276 52.381 7.70 7.70 0.00 4.34
620 665 1.032794 TCACAGAGCACAAGACGTCT 58.967 50.000 13.58 13.58 0.00 4.18
621 666 1.409064 TCACAGAGCACAAGACGTCTT 59.591 47.619 24.93 24.93 36.45 3.01
622 667 1.789464 CACAGAGCACAAGACGTCTTC 59.211 52.381 27.54 16.29 33.11 2.87
623 668 1.269831 ACAGAGCACAAGACGTCTTCC 60.270 52.381 27.54 17.79 33.11 3.46
624 669 1.000283 CAGAGCACAAGACGTCTTCCT 60.000 52.381 27.54 21.79 33.11 3.36
625 670 1.271102 AGAGCACAAGACGTCTTCCTC 59.729 52.381 27.54 27.14 33.11 3.71
626 671 0.318762 AGCACAAGACGTCTTCCTCC 59.681 55.000 27.54 15.47 33.11 4.30
627 672 0.318762 GCACAAGACGTCTTCCTCCT 59.681 55.000 27.54 3.28 33.11 3.69
628 673 1.670380 GCACAAGACGTCTTCCTCCTC 60.670 57.143 27.54 10.15 33.11 3.71
631 676 1.474879 CAAGACGTCTTCCTCCTCCTC 59.525 57.143 27.54 0.00 33.11 3.71
634 679 1.000486 CGTCTTCCTCCTCCTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
635 680 0.614979 CGTCTTCCTCCTCCTCCCAA 60.615 60.000 0.00 0.00 0.00 4.12
639 684 0.793617 TTCCTCCTCCTCCCAACTCT 59.206 55.000 0.00 0.00 0.00 3.24
651 696 1.093159 CCAACTCTTGCTGCATCCTC 58.907 55.000 1.84 0.00 0.00 3.71
655 700 1.134159 ACTCTTGCTGCATCCTCATCC 60.134 52.381 1.84 0.00 0.00 3.51
657 702 1.282738 TCTTGCTGCATCCTCATCCAA 59.717 47.619 1.84 0.00 0.00 3.53
658 703 1.676529 CTTGCTGCATCCTCATCCAAG 59.323 52.381 1.84 0.00 0.00 3.61
659 704 0.106868 TGCTGCATCCTCATCCAAGG 60.107 55.000 0.00 0.00 37.81 3.61
676 721 1.598130 GGAACACTTGCTGCGTCCT 60.598 57.895 0.00 0.00 0.00 3.85
709 755 3.732219 CACGCTCGACAAGTTAACAACTA 59.268 43.478 8.61 0.00 41.91 2.24
741 787 0.459237 CACTGAGACGATGGACAGCC 60.459 60.000 0.00 0.00 34.25 4.85
752 798 0.179234 TGGACAGCCTCGACACAAAA 59.821 50.000 0.00 0.00 34.31 2.44
854 906 5.647589 GACTTCATCACGGATTACTACACA 58.352 41.667 0.00 0.00 0.00 3.72
875 927 1.884464 CATCGAGTCCATGCCGGTG 60.884 63.158 1.90 0.00 35.57 4.94
1017 1653 1.543802 ACCATGTTTAATGCGTGGGTG 59.456 47.619 17.71 0.93 44.92 4.61
1086 1722 1.520564 GCACCACATCGATGGCGTA 60.521 57.895 28.09 0.00 44.33 4.42
1169 1805 3.716006 CTTGTGGGTGCGCGACAG 61.716 66.667 12.10 0.00 0.00 3.51
1228 1864 1.241165 TCTCAAGAACGACGCTACCA 58.759 50.000 0.00 0.00 0.00 3.25
1275 1911 0.396974 ACATGCAAGTTGGTGTGGGT 60.397 50.000 4.75 0.00 0.00 4.51
1498 2134 1.194781 AGTGGCCGATGAGGTGAACT 61.195 55.000 0.00 0.00 43.70 3.01
1535 2171 1.886655 GCTCAACATTTCGGGGAAGGT 60.887 52.381 0.00 0.00 0.00 3.50
1551 2187 1.301401 GGTCTACCTTGCGCACACA 60.301 57.895 11.12 0.00 0.00 3.72
1619 2255 2.268920 GGAGGAGCGGCACATGAA 59.731 61.111 0.00 0.00 0.00 2.57
1623 2259 0.962356 AGGAGCGGCACATGAAAAGG 60.962 55.000 0.00 0.00 0.00 3.11
1626 2262 2.179018 CGGCACATGAAAAGGGCG 59.821 61.111 0.00 3.75 42.72 6.13
1759 2397 6.609616 GGGTAATAAAATCCTTCCAATGGTGA 59.390 38.462 0.00 0.00 0.00 4.02
1769 2407 3.588210 TCCAATGGTGATGCATGATCT 57.412 42.857 2.46 0.00 31.55 2.75
1824 2470 5.892160 ATTGATGTGTTGTGAATCTCAGG 57.108 39.130 0.00 0.00 0.00 3.86
1969 2863 7.376435 TGTATGTGTTCACCATTACATCAAG 57.624 36.000 0.00 0.00 35.55 3.02
2110 3006 4.625972 AGGTTCCAACAAACTAACAACG 57.374 40.909 0.00 0.00 0.00 4.10
2162 3058 6.601613 AGTGGATGTTTTGACTGTTGTAAGAA 59.398 34.615 0.00 0.00 0.00 2.52
2165 3061 7.920151 TGGATGTTTTGACTGTTGTAAGAATTG 59.080 33.333 0.00 0.00 0.00 2.32
2198 3105 6.376864 TGATTTGTGTGAAACTCCTTCTTTCA 59.623 34.615 0.00 0.00 38.04 2.69
2367 3278 7.750458 GTGATGTCAAACCAGTACACATAATTG 59.250 37.037 0.00 0.00 0.00 2.32
2392 3303 5.474876 ACTTTTGTGCCTCCTTCTAAGATTG 59.525 40.000 0.00 0.00 0.00 2.67
2430 3341 1.553690 ATGGCGTGCCTTGTCTAGGT 61.554 55.000 12.84 0.00 46.61 3.08
2431 3342 1.741770 GGCGTGCCTTGTCTAGGTG 60.742 63.158 2.98 0.00 46.61 4.00
2432 3343 2.391389 GCGTGCCTTGTCTAGGTGC 61.391 63.158 2.16 1.20 46.61 5.01
2452 3363 2.810852 GCTGCCCTATTTGCTATCTCAC 59.189 50.000 0.00 0.00 0.00 3.51
2481 3393 5.943706 TCGATGATAGCTACTTACCTCAC 57.056 43.478 0.00 0.00 0.00 3.51
2512 3424 2.808543 CCCTTATTACTCGAGCATTGCC 59.191 50.000 13.61 0.00 0.00 4.52
2584 3496 9.337091 TCGTACTTTAGTTTACATACCGTTTAC 57.663 33.333 0.00 0.00 0.00 2.01
2606 3518 4.894114 ACGTGTCCTAATAGAAGGTAGCAT 59.106 41.667 0.00 0.00 37.91 3.79
2638 3550 9.807921 AGAATAATTTCCAAACTCTGGTTTAGA 57.192 29.630 0.00 0.00 46.51 2.10
2684 3596 5.416271 TGTGGTAGAAGGGAATGACTAAC 57.584 43.478 0.00 0.00 0.00 2.34
2685 3597 4.224370 TGTGGTAGAAGGGAATGACTAACC 59.776 45.833 0.00 0.00 0.00 2.85
2686 3598 4.224370 GTGGTAGAAGGGAATGACTAACCA 59.776 45.833 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.270779 TCATATCAACTCAGATCCAAGAAGTG 58.729 38.462 0.00 0.00 0.00 3.16
32 37 6.709397 GCAATCATATCAACTCAGATCCAAGA 59.291 38.462 0.00 0.00 0.00 3.02
40 45 4.755629 CCTCCAGCAATCATATCAACTCAG 59.244 45.833 0.00 0.00 0.00 3.35
51 56 0.322816 GCAACCTCCTCCAGCAATCA 60.323 55.000 0.00 0.00 0.00 2.57
85 123 1.267806 ACGACTCGTAACAATCACCGT 59.732 47.619 1.16 0.00 38.73 4.83
93 131 2.360483 TGGTTAACCACGACTCGTAACA 59.640 45.455 23.69 0.00 42.01 2.41
109 147 2.364632 CATCCAACCGCAGATTGGTTA 58.635 47.619 9.71 0.00 42.91 2.85
112 150 0.680921 ACCATCCAACCGCAGATTGG 60.681 55.000 4.58 4.58 37.20 3.16
113 151 1.176527 AACCATCCAACCGCAGATTG 58.823 50.000 0.00 0.00 0.00 2.67
114 152 2.238646 TCTAACCATCCAACCGCAGATT 59.761 45.455 0.00 0.00 0.00 2.40
115 153 1.837439 TCTAACCATCCAACCGCAGAT 59.163 47.619 0.00 0.00 0.00 2.90
116 154 1.207089 CTCTAACCATCCAACCGCAGA 59.793 52.381 0.00 0.00 0.00 4.26
117 155 1.656652 CTCTAACCATCCAACCGCAG 58.343 55.000 0.00 0.00 0.00 5.18
118 156 0.251916 CCTCTAACCATCCAACCGCA 59.748 55.000 0.00 0.00 0.00 5.69
119 157 0.463833 CCCTCTAACCATCCAACCGC 60.464 60.000 0.00 0.00 0.00 5.68
120 158 1.134491 GTCCCTCTAACCATCCAACCG 60.134 57.143 0.00 0.00 0.00 4.44
121 159 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
122 160 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
123 161 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
124 162 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
126 164 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
127 165 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
128 166 3.012502 AGATACCACAGTCCCTCTAACCA 59.987 47.826 0.00 0.00 0.00 3.67
129 167 3.644335 AGATACCACAGTCCCTCTAACC 58.356 50.000 0.00 0.00 0.00 2.85
130 168 4.710375 TGAAGATACCACAGTCCCTCTAAC 59.290 45.833 0.00 0.00 0.00 2.34
132 170 4.537751 CTGAAGATACCACAGTCCCTCTA 58.462 47.826 0.00 0.00 0.00 2.43
133 171 3.370104 CTGAAGATACCACAGTCCCTCT 58.630 50.000 0.00 0.00 0.00 3.69
134 172 2.159028 GCTGAAGATACCACAGTCCCTC 60.159 54.545 0.00 0.00 34.60 4.30
135 173 1.834263 GCTGAAGATACCACAGTCCCT 59.166 52.381 0.00 0.00 34.60 4.20
136 174 1.134371 GGCTGAAGATACCACAGTCCC 60.134 57.143 0.00 0.00 34.60 4.46
137 175 1.134371 GGGCTGAAGATACCACAGTCC 60.134 57.143 0.00 0.00 46.48 3.85
140 178 2.171237 TGATGGGCTGAAGATACCACAG 59.829 50.000 0.00 0.00 35.52 3.66
142 180 2.486191 CCTGATGGGCTGAAGATACCAC 60.486 54.545 0.00 0.00 35.52 4.16
156 194 4.381932 GCACCAGAATTTAAACCCTGATGG 60.382 45.833 16.13 9.83 41.37 3.51
157 195 4.463891 AGCACCAGAATTTAAACCCTGATG 59.536 41.667 16.13 12.21 0.00 3.07
158 196 4.677182 AGCACCAGAATTTAAACCCTGAT 58.323 39.130 16.13 1.15 0.00 2.90
160 198 4.559153 CAAGCACCAGAATTTAAACCCTG 58.441 43.478 10.24 10.24 0.00 4.45
162 200 3.244044 TGCAAGCACCAGAATTTAAACCC 60.244 43.478 0.00 0.00 0.00 4.11
163 201 3.988819 TGCAAGCACCAGAATTTAAACC 58.011 40.909 0.00 0.00 0.00 3.27
164 202 6.544038 AAATGCAAGCACCAGAATTTAAAC 57.456 33.333 0.00 0.00 0.00 2.01
165 203 8.845413 AATAAATGCAAGCACCAGAATTTAAA 57.155 26.923 0.00 0.00 0.00 1.52
166 204 7.548780 GGAATAAATGCAAGCACCAGAATTTAA 59.451 33.333 0.00 0.00 0.00 1.52
167 205 7.041107 GGAATAAATGCAAGCACCAGAATTTA 58.959 34.615 0.00 0.00 0.00 1.40
168 206 5.876460 GGAATAAATGCAAGCACCAGAATTT 59.124 36.000 0.00 0.00 0.00 1.82
169 207 5.188359 AGGAATAAATGCAAGCACCAGAATT 59.812 36.000 0.00 0.00 0.00 2.17
170 208 4.713321 AGGAATAAATGCAAGCACCAGAAT 59.287 37.500 0.00 0.00 0.00 2.40
173 211 3.444742 TCAGGAATAAATGCAAGCACCAG 59.555 43.478 0.00 0.00 0.00 4.00
175 213 4.454728 TTCAGGAATAAATGCAAGCACC 57.545 40.909 0.00 0.00 0.00 5.01
177 215 9.669887 AAATAAATTCAGGAATAAATGCAAGCA 57.330 25.926 0.00 0.00 0.00 3.91
190 228 9.581099 GCCGAAAATCTTAAAATAAATTCAGGA 57.419 29.630 0.00 0.00 0.00 3.86
191 229 8.531530 CGCCGAAAATCTTAAAATAAATTCAGG 58.468 33.333 0.00 0.00 0.00 3.86
192 230 9.284594 TCGCCGAAAATCTTAAAATAAATTCAG 57.715 29.630 0.00 0.00 0.00 3.02
193 231 9.796120 ATCGCCGAAAATCTTAAAATAAATTCA 57.204 25.926 0.00 0.00 0.00 2.57
195 233 8.539674 GCATCGCCGAAAATCTTAAAATAAATT 58.460 29.630 0.00 0.00 0.00 1.82
196 234 7.096640 CGCATCGCCGAAAATCTTAAAATAAAT 60.097 33.333 0.00 0.00 0.00 1.40
198 236 5.679355 CGCATCGCCGAAAATCTTAAAATAA 59.321 36.000 0.00 0.00 0.00 1.40
199 237 5.201910 CGCATCGCCGAAAATCTTAAAATA 58.798 37.500 0.00 0.00 0.00 1.40
202 240 3.046285 CGCATCGCCGAAAATCTTAAA 57.954 42.857 0.00 0.00 0.00 1.52
203 241 2.730183 CGCATCGCCGAAAATCTTAA 57.270 45.000 0.00 0.00 0.00 1.85
216 254 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
217 255 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
218 256 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
219 257 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
220 258 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
221 259 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
222 260 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
223 261 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
224 262 1.645710 AACGTCTCCTCCCACTGAAT 58.354 50.000 0.00 0.00 0.00 2.57
225 263 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
226 264 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
227 265 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
228 266 0.471211 TGGAAACGTCTCCTCCCACT 60.471 55.000 9.80 0.00 36.35 4.00
229 267 0.613777 ATGGAAACGTCTCCTCCCAC 59.386 55.000 9.80 0.00 36.35 4.61
230 268 1.003118 CAATGGAAACGTCTCCTCCCA 59.997 52.381 9.80 1.52 36.35 4.37
231 269 1.278127 TCAATGGAAACGTCTCCTCCC 59.722 52.381 9.80 0.00 36.35 4.30
232 270 2.347731 GTCAATGGAAACGTCTCCTCC 58.652 52.381 9.80 4.35 36.35 4.30
233 271 1.993370 CGTCAATGGAAACGTCTCCTC 59.007 52.381 9.80 0.00 36.35 3.71
234 272 1.616865 TCGTCAATGGAAACGTCTCCT 59.383 47.619 9.80 0.00 39.78 3.69
235 273 2.074547 TCGTCAATGGAAACGTCTCC 57.925 50.000 0.00 0.00 39.78 3.71
236 274 3.250744 TCATCGTCAATGGAAACGTCTC 58.749 45.455 0.00 0.00 39.78 3.36
237 275 3.254060 CTCATCGTCAATGGAAACGTCT 58.746 45.455 0.00 0.00 39.78 4.18
238 276 2.348666 CCTCATCGTCAATGGAAACGTC 59.651 50.000 0.00 0.00 39.78 4.34
239 277 2.289444 ACCTCATCGTCAATGGAAACGT 60.289 45.455 0.00 0.00 39.78 3.99
240 278 2.094258 CACCTCATCGTCAATGGAAACG 59.906 50.000 0.00 0.00 40.17 3.60
241 279 2.159517 GCACCTCATCGTCAATGGAAAC 60.160 50.000 0.00 0.00 35.94 2.78
242 280 2.083774 GCACCTCATCGTCAATGGAAA 58.916 47.619 0.00 0.00 35.94 3.13
243 281 1.678728 GGCACCTCATCGTCAATGGAA 60.679 52.381 0.00 0.00 35.94 3.53
244 282 0.107703 GGCACCTCATCGTCAATGGA 60.108 55.000 0.00 0.00 35.94 3.41
245 283 0.107508 AGGCACCTCATCGTCAATGG 60.108 55.000 0.00 0.00 35.94 3.16
246 284 2.205074 GTAGGCACCTCATCGTCAATG 58.795 52.381 0.00 0.00 36.65 2.82
247 285 1.202417 CGTAGGCACCTCATCGTCAAT 60.202 52.381 0.00 0.00 0.00 2.57
248 286 0.172578 CGTAGGCACCTCATCGTCAA 59.827 55.000 0.00 0.00 0.00 3.18
249 287 0.678684 TCGTAGGCACCTCATCGTCA 60.679 55.000 0.00 0.00 0.00 4.35
250 288 0.669077 ATCGTAGGCACCTCATCGTC 59.331 55.000 0.00 0.00 0.00 4.20
251 289 0.385751 CATCGTAGGCACCTCATCGT 59.614 55.000 0.00 0.00 0.00 3.73
252 290 0.668535 TCATCGTAGGCACCTCATCG 59.331 55.000 0.00 0.00 0.00 3.84
253 291 1.683917 AGTCATCGTAGGCACCTCATC 59.316 52.381 0.00 0.00 0.00 2.92
254 292 1.781786 AGTCATCGTAGGCACCTCAT 58.218 50.000 0.00 0.00 0.00 2.90
255 293 1.557099 AAGTCATCGTAGGCACCTCA 58.443 50.000 0.00 0.00 0.00 3.86
256 294 2.674796 AAAGTCATCGTAGGCACCTC 57.325 50.000 0.00 0.00 0.00 3.85
257 295 5.864418 TTATAAAGTCATCGTAGGCACCT 57.136 39.130 0.00 0.00 0.00 4.00
258 296 7.492352 AATTTATAAAGTCATCGTAGGCACC 57.508 36.000 3.94 0.00 0.00 5.01
259 297 8.609176 TGAAATTTATAAAGTCATCGTAGGCAC 58.391 33.333 3.94 0.00 0.00 5.01
260 298 8.725405 TGAAATTTATAAAGTCATCGTAGGCA 57.275 30.769 3.94 0.00 0.00 4.75
261 299 9.651718 CTTGAAATTTATAAAGTCATCGTAGGC 57.348 33.333 12.68 0.00 0.00 3.93
274 312 8.243426 GCCGGCATATCATCTTGAAATTTATAA 58.757 33.333 24.80 0.00 0.00 0.98
275 313 7.611467 AGCCGGCATATCATCTTGAAATTTATA 59.389 33.333 31.54 0.00 0.00 0.98
276 314 6.435277 AGCCGGCATATCATCTTGAAATTTAT 59.565 34.615 31.54 0.00 0.00 1.40
277 315 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
278 316 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
279 317 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
280 318 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
281 319 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
282 320 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
283 321 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
284 322 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
285 323 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
286 324 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
287 325 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
288 326 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
289 327 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
290 328 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
291 329 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
292 330 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
293 331 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
294 332 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
295 333 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
296 334 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
297 335 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
298 336 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
299 337 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
300 338 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
301 339 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
302 340 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
303 341 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
304 342 2.961526 TATGAGCACCTCCGAAAGAC 57.038 50.000 0.00 0.00 0.00 3.01
305 343 3.513912 TCTTTATGAGCACCTCCGAAAGA 59.486 43.478 11.50 11.50 37.60 2.52
306 344 3.861840 TCTTTATGAGCACCTCCGAAAG 58.138 45.455 8.51 8.51 34.91 2.62
307 345 3.973206 TCTTTATGAGCACCTCCGAAA 57.027 42.857 0.00 0.00 0.00 3.46
308 346 4.039245 CCTATCTTTATGAGCACCTCCGAA 59.961 45.833 0.00 0.00 0.00 4.30
309 347 3.574396 CCTATCTTTATGAGCACCTCCGA 59.426 47.826 0.00 0.00 0.00 4.55
310 348 3.574396 TCCTATCTTTATGAGCACCTCCG 59.426 47.826 0.00 0.00 0.00 4.63
311 349 5.012561 ACATCCTATCTTTATGAGCACCTCC 59.987 44.000 0.00 0.00 0.00 4.30
312 350 5.931146 CACATCCTATCTTTATGAGCACCTC 59.069 44.000 0.00 0.00 0.00 3.85
313 351 5.744300 GCACATCCTATCTTTATGAGCACCT 60.744 44.000 0.00 0.00 37.23 4.00
314 352 4.453819 GCACATCCTATCTTTATGAGCACC 59.546 45.833 0.00 0.00 37.23 5.01
315 353 4.151335 CGCACATCCTATCTTTATGAGCAC 59.849 45.833 0.00 0.00 37.14 4.40
316 354 4.202253 ACGCACATCCTATCTTTATGAGCA 60.202 41.667 0.00 0.00 37.14 4.26
317 355 4.151335 CACGCACATCCTATCTTTATGAGC 59.849 45.833 0.00 0.00 34.95 4.26
318 356 5.176406 CACACGCACATCCTATCTTTATGAG 59.824 44.000 0.00 0.00 0.00 2.90
319 357 5.049828 CACACGCACATCCTATCTTTATGA 58.950 41.667 0.00 0.00 0.00 2.15
320 358 4.811024 ACACACGCACATCCTATCTTTATG 59.189 41.667 0.00 0.00 0.00 1.90
321 359 5.023533 ACACACGCACATCCTATCTTTAT 57.976 39.130 0.00 0.00 0.00 1.40
322 360 4.465632 ACACACGCACATCCTATCTTTA 57.534 40.909 0.00 0.00 0.00 1.85
323 361 3.334583 ACACACGCACATCCTATCTTT 57.665 42.857 0.00 0.00 0.00 2.52
324 362 3.733988 CGTACACACGCACATCCTATCTT 60.734 47.826 0.00 0.00 42.05 2.40
325 363 2.223502 CGTACACACGCACATCCTATCT 60.224 50.000 0.00 0.00 42.05 1.98
326 364 2.117137 CGTACACACGCACATCCTATC 58.883 52.381 0.00 0.00 42.05 2.08
327 365 2.203800 CGTACACACGCACATCCTAT 57.796 50.000 0.00 0.00 42.05 2.57
328 366 3.706287 CGTACACACGCACATCCTA 57.294 52.632 0.00 0.00 42.05 2.94
329 367 4.571250 CGTACACACGCACATCCT 57.429 55.556 0.00 0.00 42.05 3.24
338 376 2.066262 CATCCCTGTGAACGTACACAC 58.934 52.381 11.66 11.66 44.29 3.82
339 377 1.964933 TCATCCCTGTGAACGTACACA 59.035 47.619 0.00 0.00 46.45 3.72
340 378 2.736144 TCATCCCTGTGAACGTACAC 57.264 50.000 0.00 0.00 40.68 2.90
341 379 3.007506 ACATTCATCCCTGTGAACGTACA 59.992 43.478 0.00 0.00 40.60 2.90
342 380 3.596214 ACATTCATCCCTGTGAACGTAC 58.404 45.455 0.00 0.00 40.60 3.67
343 381 3.973206 ACATTCATCCCTGTGAACGTA 57.027 42.857 0.00 0.00 40.60 3.57
344 382 2.859165 ACATTCATCCCTGTGAACGT 57.141 45.000 0.00 0.00 40.60 3.99
345 383 3.002656 GCATACATTCATCCCTGTGAACG 59.997 47.826 0.00 0.00 40.60 3.95
346 384 3.002656 CGCATACATTCATCCCTGTGAAC 59.997 47.826 0.00 0.00 40.60 3.18
347 385 3.205338 CGCATACATTCATCCCTGTGAA 58.795 45.455 0.00 0.00 41.88 3.18
348 386 2.837498 CGCATACATTCATCCCTGTGA 58.163 47.619 0.00 0.00 0.00 3.58
349 387 1.265095 GCGCATACATTCATCCCTGTG 59.735 52.381 0.30 0.00 0.00 3.66
350 388 1.597742 GCGCATACATTCATCCCTGT 58.402 50.000 0.30 0.00 0.00 4.00
351 389 0.514255 CGCGCATACATTCATCCCTG 59.486 55.000 8.75 0.00 0.00 4.45
352 390 0.106708 ACGCGCATACATTCATCCCT 59.893 50.000 5.73 0.00 0.00 4.20
353 391 0.235665 CACGCGCATACATTCATCCC 59.764 55.000 5.73 0.00 0.00 3.85
354 392 0.384725 GCACGCGCATACATTCATCC 60.385 55.000 5.73 0.00 38.36 3.51
355 393 0.719194 CGCACGCGCATACATTCATC 60.719 55.000 5.73 0.00 38.40 2.92
356 394 1.276547 CGCACGCGCATACATTCAT 59.723 52.632 5.73 0.00 38.40 2.57
357 395 2.097635 ACGCACGCGCATACATTCA 61.098 52.632 12.02 0.00 44.19 2.57
358 396 1.648165 CACGCACGCGCATACATTC 60.648 57.895 12.02 0.00 44.19 2.67
359 397 2.387445 ACACGCACGCGCATACATT 61.387 52.632 12.02 0.00 44.19 2.71
360 398 2.813474 ACACGCACGCGCATACAT 60.813 55.556 12.02 0.00 44.19 2.29
361 399 3.772560 CACACGCACGCGCATACA 61.773 61.111 12.02 0.00 44.19 2.29
362 400 2.438148 TACACACGCACGCGCATAC 61.438 57.895 12.02 0.00 44.19 2.39
363 401 2.126424 TACACACGCACGCGCATA 60.126 55.556 12.02 0.00 44.19 3.14
364 402 3.773630 GTACACACGCACGCGCAT 61.774 61.111 12.02 0.00 44.19 4.73
374 412 2.066262 CATCCCTGTGAACGTACACAC 58.934 52.381 11.66 11.66 44.29 3.82
375 413 1.964933 TCATCCCTGTGAACGTACACA 59.035 47.619 0.00 0.00 46.45 3.72
376 414 2.736144 TCATCCCTGTGAACGTACAC 57.264 50.000 0.00 0.00 40.68 2.90
377 415 3.007506 ACATTCATCCCTGTGAACGTACA 59.992 43.478 0.00 0.00 40.60 2.90
378 416 3.596214 ACATTCATCCCTGTGAACGTAC 58.404 45.455 0.00 0.00 40.60 3.67
379 417 3.973206 ACATTCATCCCTGTGAACGTA 57.027 42.857 0.00 0.00 40.60 3.57
380 418 2.859165 ACATTCATCCCTGTGAACGT 57.141 45.000 0.00 0.00 40.60 3.99
381 419 3.002656 GCATACATTCATCCCTGTGAACG 59.997 47.826 0.00 0.00 40.60 3.95
382 420 3.002656 CGCATACATTCATCCCTGTGAAC 59.997 47.826 0.00 0.00 40.60 3.18
383 421 3.205338 CGCATACATTCATCCCTGTGAA 58.795 45.455 0.00 0.00 41.88 3.18
384 422 2.837498 CGCATACATTCATCCCTGTGA 58.163 47.619 0.00 0.00 0.00 3.58
385 423 1.265095 GCGCATACATTCATCCCTGTG 59.735 52.381 0.30 0.00 0.00 3.66
386 424 1.597742 GCGCATACATTCATCCCTGT 58.402 50.000 0.30 0.00 0.00 4.00
387 425 0.514255 CGCGCATACATTCATCCCTG 59.486 55.000 8.75 0.00 0.00 4.45
388 426 0.106708 ACGCGCATACATTCATCCCT 59.893 50.000 5.73 0.00 0.00 4.20
389 427 0.235665 CACGCGCATACATTCATCCC 59.764 55.000 5.73 0.00 0.00 3.85
390 428 0.937304 ACACGCGCATACATTCATCC 59.063 50.000 5.73 0.00 0.00 3.51
391 429 3.184379 ACATACACGCGCATACATTCATC 59.816 43.478 5.73 0.00 0.00 2.92
392 430 3.059665 CACATACACGCGCATACATTCAT 60.060 43.478 5.73 0.00 0.00 2.57
393 431 2.283884 CACATACACGCGCATACATTCA 59.716 45.455 5.73 0.00 0.00 2.57
394 432 2.538037 TCACATACACGCGCATACATTC 59.462 45.455 5.73 0.00 0.00 2.67
395 433 2.539688 CTCACATACACGCGCATACATT 59.460 45.455 5.73 0.00 0.00 2.71
396 434 2.127251 CTCACATACACGCGCATACAT 58.873 47.619 5.73 0.00 0.00 2.29
397 435 1.555477 CTCACATACACGCGCATACA 58.445 50.000 5.73 0.00 0.00 2.29
398 436 0.229753 GCTCACATACACGCGCATAC 59.770 55.000 5.73 0.00 0.00 2.39
399 437 1.206115 CGCTCACATACACGCGCATA 61.206 55.000 5.73 0.00 39.11 3.14
400 438 2.516589 CGCTCACATACACGCGCAT 61.517 57.895 5.73 0.00 39.11 4.73
401 439 3.178592 CGCTCACATACACGCGCA 61.179 61.111 5.73 0.00 39.11 6.09
405 443 0.093535 CACAAGCGCTCACATACACG 59.906 55.000 12.06 0.00 0.00 4.49
406 444 1.126846 GACACAAGCGCTCACATACAC 59.873 52.381 12.06 0.00 0.00 2.90
407 445 1.000843 AGACACAAGCGCTCACATACA 59.999 47.619 12.06 0.00 0.00 2.29
408 446 1.391485 CAGACACAAGCGCTCACATAC 59.609 52.381 12.06 1.00 0.00 2.39
409 447 1.000843 ACAGACACAAGCGCTCACATA 59.999 47.619 12.06 0.00 0.00 2.29
410 448 0.250038 ACAGACACAAGCGCTCACAT 60.250 50.000 12.06 0.00 0.00 3.21
411 449 0.387565 TACAGACACAAGCGCTCACA 59.612 50.000 12.06 0.00 0.00 3.58
412 450 0.784778 GTACAGACACAAGCGCTCAC 59.215 55.000 12.06 0.37 0.00 3.51
413 451 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
414 452 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
415 453 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
416 454 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
417 455 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
418 456 6.539649 TTAAACATCAGTACAGACACAAGC 57.460 37.500 0.00 0.00 0.00 4.01
444 482 1.466697 CGAATGTATGGCCGCGTTTTT 60.467 47.619 4.92 0.00 0.00 1.94
445 483 0.098025 CGAATGTATGGCCGCGTTTT 59.902 50.000 4.92 0.00 0.00 2.43
446 484 1.719117 CGAATGTATGGCCGCGTTT 59.281 52.632 4.92 0.00 0.00 3.60
447 485 2.819552 GCGAATGTATGGCCGCGTT 61.820 57.895 4.92 0.00 38.27 4.84
448 486 3.269347 GCGAATGTATGGCCGCGT 61.269 61.111 4.92 0.00 38.27 6.01
453 491 1.600916 GGGAGGGCGAATGTATGGC 60.601 63.158 0.00 0.00 0.00 4.40
454 492 0.182537 TTGGGAGGGCGAATGTATGG 59.817 55.000 0.00 0.00 0.00 2.74
455 493 2.154462 GATTGGGAGGGCGAATGTATG 58.846 52.381 0.00 0.00 0.00 2.39
456 494 1.774254 TGATTGGGAGGGCGAATGTAT 59.226 47.619 0.00 0.00 0.00 2.29
457 495 1.208706 TGATTGGGAGGGCGAATGTA 58.791 50.000 0.00 0.00 0.00 2.29
458 496 0.331278 TTGATTGGGAGGGCGAATGT 59.669 50.000 0.00 0.00 0.00 2.71
459 497 1.134946 GTTTGATTGGGAGGGCGAATG 59.865 52.381 0.00 0.00 0.00 2.67
460 498 1.474330 GTTTGATTGGGAGGGCGAAT 58.526 50.000 0.00 0.00 0.00 3.34
461 499 0.958382 CGTTTGATTGGGAGGGCGAA 60.958 55.000 0.00 0.00 0.00 4.70
462 500 1.376683 CGTTTGATTGGGAGGGCGA 60.377 57.895 0.00 0.00 0.00 5.54
463 501 3.051392 GCGTTTGATTGGGAGGGCG 62.051 63.158 0.00 0.00 0.00 6.13
464 502 2.710902 GGCGTTTGATTGGGAGGGC 61.711 63.158 0.00 0.00 0.00 5.19
465 503 2.052104 GGGCGTTTGATTGGGAGGG 61.052 63.158 0.00 0.00 0.00 4.30
466 504 0.684153 ATGGGCGTTTGATTGGGAGG 60.684 55.000 0.00 0.00 0.00 4.30
467 505 0.740737 GATGGGCGTTTGATTGGGAG 59.259 55.000 0.00 0.00 0.00 4.30
468 506 0.682855 GGATGGGCGTTTGATTGGGA 60.683 55.000 0.00 0.00 0.00 4.37
469 507 1.675720 GGGATGGGCGTTTGATTGGG 61.676 60.000 0.00 0.00 0.00 4.12
470 508 0.969917 TGGGATGGGCGTTTGATTGG 60.970 55.000 0.00 0.00 0.00 3.16
471 509 0.173255 GTGGGATGGGCGTTTGATTG 59.827 55.000 0.00 0.00 0.00 2.67
472 510 0.970427 GGTGGGATGGGCGTTTGATT 60.970 55.000 0.00 0.00 0.00 2.57
473 511 1.379843 GGTGGGATGGGCGTTTGAT 60.380 57.895 0.00 0.00 0.00 2.57
474 512 2.034999 GGTGGGATGGGCGTTTGA 59.965 61.111 0.00 0.00 0.00 2.69
475 513 1.257055 ATTGGTGGGATGGGCGTTTG 61.257 55.000 0.00 0.00 0.00 2.93
476 514 0.970427 GATTGGTGGGATGGGCGTTT 60.970 55.000 0.00 0.00 0.00 3.60
477 515 1.379843 GATTGGTGGGATGGGCGTT 60.380 57.895 0.00 0.00 0.00 4.84
478 516 2.148723 TTGATTGGTGGGATGGGCGT 62.149 55.000 0.00 0.00 0.00 5.68
479 517 1.379710 TTGATTGGTGGGATGGGCG 60.380 57.895 0.00 0.00 0.00 6.13
480 518 0.033208 TCTTGATTGGTGGGATGGGC 60.033 55.000 0.00 0.00 0.00 5.36
481 519 2.025863 GCTCTTGATTGGTGGGATGGG 61.026 57.143 0.00 0.00 0.00 4.00
482 520 1.396653 GCTCTTGATTGGTGGGATGG 58.603 55.000 0.00 0.00 0.00 3.51
483 521 1.019673 CGCTCTTGATTGGTGGGATG 58.980 55.000 0.00 0.00 0.00 3.51
484 522 0.107017 CCGCTCTTGATTGGTGGGAT 60.107 55.000 0.00 0.00 0.00 3.85
485 523 1.299648 CCGCTCTTGATTGGTGGGA 59.700 57.895 0.00 0.00 0.00 4.37
486 524 1.002134 ACCGCTCTTGATTGGTGGG 60.002 57.895 0.00 0.00 35.21 4.61
487 525 2.174334 CACCGCTCTTGATTGGTGG 58.826 57.895 11.34 0.00 46.37 4.61
489 527 0.981183 TACCACCGCTCTTGATTGGT 59.019 50.000 0.00 0.00 43.17 3.67
490 528 1.066143 ACTACCACCGCTCTTGATTGG 60.066 52.381 0.00 0.00 0.00 3.16
491 529 2.386661 ACTACCACCGCTCTTGATTG 57.613 50.000 0.00 0.00 0.00 2.67
492 530 3.097614 ACTACTACCACCGCTCTTGATT 58.902 45.455 0.00 0.00 0.00 2.57
493 531 2.736347 ACTACTACCACCGCTCTTGAT 58.264 47.619 0.00 0.00 0.00 2.57
494 532 2.211250 ACTACTACCACCGCTCTTGA 57.789 50.000 0.00 0.00 0.00 3.02
495 533 2.751259 TGTACTACTACCACCGCTCTTG 59.249 50.000 0.00 0.00 0.00 3.02
496 534 3.077484 TGTACTACTACCACCGCTCTT 57.923 47.619 0.00 0.00 0.00 2.85
497 535 2.795231 TGTACTACTACCACCGCTCT 57.205 50.000 0.00 0.00 0.00 4.09
498 536 3.212685 AGATGTACTACTACCACCGCTC 58.787 50.000 0.00 0.00 0.00 5.03
499 537 3.294038 AGATGTACTACTACCACCGCT 57.706 47.619 0.00 0.00 0.00 5.52
500 538 4.480386 GTAGATGTACTACTACCACCGC 57.520 50.000 14.55 0.00 45.56 5.68
510 548 7.633621 CGTTTAACCGATCTGTAGATGTACTA 58.366 38.462 0.00 0.00 34.37 1.82
511 549 6.493116 CGTTTAACCGATCTGTAGATGTACT 58.507 40.000 0.00 0.00 34.37 2.73
512 550 5.172771 GCGTTTAACCGATCTGTAGATGTAC 59.827 44.000 0.00 0.00 34.37 2.90
513 551 5.276270 GCGTTTAACCGATCTGTAGATGTA 58.724 41.667 0.00 0.00 34.37 2.29
514 552 4.110482 GCGTTTAACCGATCTGTAGATGT 58.890 43.478 0.00 0.00 34.37 3.06
515 553 3.179795 CGCGTTTAACCGATCTGTAGATG 59.820 47.826 0.00 0.00 34.37 2.90
516 554 3.369385 CGCGTTTAACCGATCTGTAGAT 58.631 45.455 0.00 0.00 37.51 1.98
517 555 2.478370 CCGCGTTTAACCGATCTGTAGA 60.478 50.000 4.92 0.00 0.00 2.59
518 556 1.850441 CCGCGTTTAACCGATCTGTAG 59.150 52.381 4.92 0.00 0.00 2.74
519 557 1.912001 CCGCGTTTAACCGATCTGTA 58.088 50.000 4.92 0.00 0.00 2.74
520 558 1.356527 GCCGCGTTTAACCGATCTGT 61.357 55.000 4.92 0.00 0.00 3.41
521 559 1.347221 GCCGCGTTTAACCGATCTG 59.653 57.895 4.92 0.00 0.00 2.90
522 560 1.812507 GGCCGCGTTTAACCGATCT 60.813 57.895 4.92 0.00 0.00 2.75
523 561 1.759293 GAGGCCGCGTTTAACCGATC 61.759 60.000 4.92 0.00 0.00 3.69
524 562 1.812507 GAGGCCGCGTTTAACCGAT 60.813 57.895 4.92 0.00 0.00 4.18
525 563 2.432972 GAGGCCGCGTTTAACCGA 60.433 61.111 4.92 0.00 0.00 4.69
526 564 3.493440 GGAGGCCGCGTTTAACCG 61.493 66.667 4.92 0.00 0.00 4.44
527 565 3.129502 GGGAGGCCGCGTTTAACC 61.130 66.667 4.92 1.52 0.00 2.85
528 566 2.046604 AGGGAGGCCGCGTTTAAC 60.047 61.111 4.92 0.00 0.00 2.01
529 567 2.266689 GAGGGAGGCCGCGTTTAA 59.733 61.111 4.92 0.00 0.00 1.52
530 568 3.777910 GGAGGGAGGCCGCGTTTA 61.778 66.667 4.92 0.00 0.00 2.01
540 578 3.450115 GACGGACGTGGGAGGGAG 61.450 72.222 0.53 0.00 0.00 4.30
555 593 5.638234 GTGAAGGCTTTATATATGGGACGAC 59.362 44.000 0.00 0.00 0.00 4.34
556 594 5.305902 TGTGAAGGCTTTATATATGGGACGA 59.694 40.000 0.00 0.00 0.00 4.20
557 595 5.408604 GTGTGAAGGCTTTATATATGGGACG 59.591 44.000 0.00 0.00 0.00 4.79
558 596 6.296026 TGTGTGAAGGCTTTATATATGGGAC 58.704 40.000 0.00 0.00 0.00 4.46
560 598 6.375455 GGATGTGTGAAGGCTTTATATATGGG 59.625 42.308 0.00 0.00 0.00 4.00
562 600 6.375455 GGGGATGTGTGAAGGCTTTATATATG 59.625 42.308 0.00 0.00 0.00 1.78
563 601 6.275618 AGGGGATGTGTGAAGGCTTTATATAT 59.724 38.462 0.00 0.00 0.00 0.86
572 617 1.077429 GGAGGGGATGTGTGAAGGC 60.077 63.158 0.00 0.00 0.00 4.35
592 637 1.816679 TGCTCTGTGATGATGCGGC 60.817 57.895 0.00 0.00 0.00 6.53
593 638 0.741927 TGTGCTCTGTGATGATGCGG 60.742 55.000 0.00 0.00 0.00 5.69
594 639 1.062148 CTTGTGCTCTGTGATGATGCG 59.938 52.381 0.00 0.00 0.00 4.73
595 640 2.095532 GTCTTGTGCTCTGTGATGATGC 59.904 50.000 0.00 0.00 0.00 3.91
596 641 2.347755 CGTCTTGTGCTCTGTGATGATG 59.652 50.000 0.00 0.00 0.00 3.07
597 642 2.028658 ACGTCTTGTGCTCTGTGATGAT 60.029 45.455 0.00 0.00 0.00 2.45
598 643 1.341209 ACGTCTTGTGCTCTGTGATGA 59.659 47.619 0.00 0.00 0.00 2.92
599 644 1.723542 GACGTCTTGTGCTCTGTGATG 59.276 52.381 8.70 0.00 0.00 3.07
600 645 1.615883 AGACGTCTTGTGCTCTGTGAT 59.384 47.619 13.58 0.00 0.00 3.06
602 647 1.789464 GAAGACGTCTTGTGCTCTGTG 59.211 52.381 34.23 0.00 36.11 3.66
603 648 1.269831 GGAAGACGTCTTGTGCTCTGT 60.270 52.381 34.23 8.02 36.11 3.41
604 649 1.000283 AGGAAGACGTCTTGTGCTCTG 60.000 52.381 34.23 0.00 36.11 3.35
605 650 1.271102 GAGGAAGACGTCTTGTGCTCT 59.729 52.381 34.23 20.94 36.11 4.09
606 651 1.670380 GGAGGAAGACGTCTTGTGCTC 60.670 57.143 34.23 27.95 36.11 4.26
607 652 0.318762 GGAGGAAGACGTCTTGTGCT 59.681 55.000 34.23 22.24 36.11 4.40
608 653 0.318762 AGGAGGAAGACGTCTTGTGC 59.681 55.000 34.23 24.19 36.11 4.57
610 655 1.203075 AGGAGGAGGAAGACGTCTTGT 60.203 52.381 34.23 21.02 36.11 3.16
611 656 1.474879 GAGGAGGAGGAAGACGTCTTG 59.525 57.143 34.23 0.00 36.11 3.02
612 657 1.617533 GGAGGAGGAGGAAGACGTCTT 60.618 57.143 30.12 30.12 39.23 3.01
613 658 0.033894 GGAGGAGGAGGAAGACGTCT 60.034 60.000 13.58 13.58 0.00 4.18
614 659 1.038681 GGGAGGAGGAGGAAGACGTC 61.039 65.000 7.70 7.70 0.00 4.34
615 660 1.000612 GGGAGGAGGAGGAAGACGT 59.999 63.158 0.00 0.00 0.00 4.34
616 661 0.614979 TTGGGAGGAGGAGGAAGACG 60.615 60.000 0.00 0.00 0.00 4.18
617 662 0.906066 GTTGGGAGGAGGAGGAAGAC 59.094 60.000 0.00 0.00 0.00 3.01
618 663 0.793617 AGTTGGGAGGAGGAGGAAGA 59.206 55.000 0.00 0.00 0.00 2.87
619 664 1.199615 GAGTTGGGAGGAGGAGGAAG 58.800 60.000 0.00 0.00 0.00 3.46
620 665 0.793617 AGAGTTGGGAGGAGGAGGAA 59.206 55.000 0.00 0.00 0.00 3.36
621 666 0.793617 AAGAGTTGGGAGGAGGAGGA 59.206 55.000 0.00 0.00 0.00 3.71
622 667 0.908198 CAAGAGTTGGGAGGAGGAGG 59.092 60.000 0.00 0.00 0.00 4.30
623 668 0.251634 GCAAGAGTTGGGAGGAGGAG 59.748 60.000 0.00 0.00 0.00 3.69
624 669 0.178891 AGCAAGAGTTGGGAGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
625 670 0.035630 CAGCAAGAGTTGGGAGGAGG 60.036 60.000 0.00 0.00 0.00 4.30
626 671 0.676151 GCAGCAAGAGTTGGGAGGAG 60.676 60.000 0.00 0.00 0.00 3.69
627 672 1.376466 GCAGCAAGAGTTGGGAGGA 59.624 57.895 0.00 0.00 0.00 3.71
628 673 0.323178 ATGCAGCAAGAGTTGGGAGG 60.323 55.000 0.00 0.00 0.00 4.30
631 676 0.323178 AGGATGCAGCAAGAGTTGGG 60.323 55.000 3.51 0.00 0.00 4.12
634 679 2.641305 GATGAGGATGCAGCAAGAGTT 58.359 47.619 3.51 0.00 0.00 3.01
635 680 1.134159 GGATGAGGATGCAGCAAGAGT 60.134 52.381 3.51 0.00 0.00 3.24
639 684 1.683938 CCTTGGATGAGGATGCAGCAA 60.684 52.381 3.51 0.00 39.25 3.91
657 702 1.598130 GGACGCAGCAAGTGTTCCT 60.598 57.895 0.00 0.00 42.04 3.36
658 703 1.598130 AGGACGCAGCAAGTGTTCC 60.598 57.895 0.00 1.41 42.04 3.62
659 704 0.880278 TCAGGACGCAGCAAGTGTTC 60.880 55.000 0.00 0.00 42.04 3.18
660 705 0.250467 ATCAGGACGCAGCAAGTGTT 60.250 50.000 0.00 0.00 42.04 3.32
661 706 0.671781 GATCAGGACGCAGCAAGTGT 60.672 55.000 0.00 0.00 45.36 3.55
662 707 1.364626 GGATCAGGACGCAGCAAGTG 61.365 60.000 0.00 0.00 0.00 3.16
663 708 1.078848 GGATCAGGACGCAGCAAGT 60.079 57.895 0.00 0.00 0.00 3.16
672 717 2.456119 CGTGCGCTTGGATCAGGAC 61.456 63.158 9.73 0.00 0.00 3.85
692 737 9.872757 GATCAAATTTAGTTGTTAACTTGTCGA 57.127 29.630 7.22 0.00 42.81 4.20
709 755 5.491070 TCGTCTCAGTGATGGATCAAATTT 58.509 37.500 0.00 0.00 38.75 1.82
741 787 2.549282 CGCCGGTTTTGTGTCGAG 59.451 61.111 1.90 0.00 0.00 4.04
762 814 4.090057 GCTGCAACCTTCGACGCC 62.090 66.667 0.00 0.00 0.00 5.68
829 881 4.637091 TGTAGTAATCCGTGATGAAGTCGA 59.363 41.667 0.00 0.00 0.00 4.20
854 906 1.522355 CGGCATGGACTCGATGCTT 60.522 57.895 21.23 0.00 44.75 3.91
875 927 2.671963 GGTTTCACGTGGGGGAGC 60.672 66.667 17.00 5.36 0.00 4.70
882 934 0.034896 AGGTAGCCTGGTTTCACGTG 59.965 55.000 9.94 9.94 29.57 4.49
902 954 2.240500 CGCCATAAGCTCGTCCTGC 61.241 63.158 0.00 0.00 40.39 4.85
904 956 1.437986 GACGCCATAAGCTCGTCCT 59.562 57.895 12.50 0.00 44.62 3.85
997 1633 1.543802 CACCCACGCATTAAACATGGT 59.456 47.619 0.00 0.00 0.00 3.55
1017 1653 0.028505 CATAGGCAGCATCAACGTGC 59.971 55.000 0.00 0.00 45.38 5.34
1023 1659 4.892002 CCAGCATAGGCAGCATCA 57.108 55.556 0.67 0.00 44.61 3.07
1047 1683 2.045926 AACTCCGGGCAGATGCAC 60.046 61.111 0.00 1.30 44.36 4.57
1086 1722 0.900182 TGATGGAGTCCACGTGCTCT 60.900 55.000 15.86 14.52 35.80 4.09
1169 1805 2.740055 CGCCAGTGAGACAGTGCC 60.740 66.667 0.00 0.00 33.84 5.01
1174 1810 0.893727 TCTAGTGCGCCAGTGAGACA 60.894 55.000 4.18 0.00 0.00 3.41
1182 1818 1.211969 GTTCGTCTCTAGTGCGCCA 59.788 57.895 4.18 0.00 0.00 5.69
1184 1820 1.516603 GGGTTCGTCTCTAGTGCGC 60.517 63.158 0.00 0.00 0.00 6.09
1236 1872 0.322456 CCTTGAAATCGGTGGCCTCA 60.322 55.000 3.32 0.00 0.00 3.86
1249 1885 2.361757 CACCAACTTGCATGTCCTTGAA 59.638 45.455 5.61 0.00 0.00 2.69
1498 2134 1.146041 GCCGGTCCATCAGCACATA 59.854 57.895 1.90 0.00 0.00 2.29
1535 2171 0.599991 CACTGTGTGCGCAAGGTAGA 60.600 55.000 14.00 0.00 38.28 2.59
1551 2187 1.874345 CGAACCTGCTACCGACCACT 61.874 60.000 0.00 0.00 0.00 4.00
1560 2196 1.538047 ACCGTAGAACGAACCTGCTA 58.462 50.000 0.15 0.00 46.05 3.49
1615 2251 1.678970 GCTCCCACGCCCTTTTCAT 60.679 57.895 0.00 0.00 0.00 2.57
1619 2255 2.543067 GATGAGCTCCCACGCCCTTT 62.543 60.000 12.15 0.00 0.00 3.11
1623 2259 1.817099 CTTGATGAGCTCCCACGCC 60.817 63.158 12.15 0.00 0.00 5.68
1626 2262 2.160417 CGTTTTCTTGATGAGCTCCCAC 59.840 50.000 12.15 3.11 0.00 4.61
1665 2301 0.250640 ATTGCATGATCTCCTCCGCC 60.251 55.000 0.00 0.00 0.00 6.13
1769 2407 1.140161 GTACATCGTACTGCCGGCA 59.860 57.895 30.59 30.59 0.00 5.69
1940 2833 9.638239 GATGTAATGGTGAACACATACATTTTT 57.362 29.630 20.09 8.59 41.65 1.94
2110 3006 2.493273 TTTTCTGGCGGGGGACATCC 62.493 60.000 0.00 0.00 0.00 3.51
2139 3035 7.581213 ATTCTTACAACAGTCAAAACATCCA 57.419 32.000 0.00 0.00 0.00 3.41
2151 3047 9.897744 AATCATACACAACAATTCTTACAACAG 57.102 29.630 0.00 0.00 0.00 3.16
2162 3058 8.196771 AGTTTCACACAAATCATACACAACAAT 58.803 29.630 0.00 0.00 0.00 2.71
2165 3061 6.636850 GGAGTTTCACACAAATCATACACAAC 59.363 38.462 0.00 0.00 0.00 3.32
2227 3134 7.890127 ACTGAAGATATTTCCAATGGAAGTTGA 59.110 33.333 15.20 0.74 43.06 3.18
2367 3278 4.642429 TCTTAGAAGGAGGCACAAAAGTC 58.358 43.478 0.00 0.00 0.00 3.01
2392 3303 1.713597 TGATGTCTCGTGCACATGTC 58.286 50.000 18.64 6.98 34.49 3.06
2430 3341 2.439135 TGAGATAGCAAATAGGGCAGCA 59.561 45.455 0.00 0.00 0.00 4.41
2431 3342 2.810852 GTGAGATAGCAAATAGGGCAGC 59.189 50.000 0.00 0.00 0.00 5.25
2432 3343 4.063689 CAGTGAGATAGCAAATAGGGCAG 58.936 47.826 0.00 0.00 0.00 4.85
2452 3363 8.085296 AGGTAAGTAGCTATCATCGATTTTCAG 58.915 37.037 0.00 0.00 31.28 3.02
2481 3393 6.492007 TCGAGTAATAAGGGCTTATAGACG 57.508 41.667 0.00 0.00 34.90 4.18
2557 3469 8.810652 AAACGGTATGTAAACTAAAGTACGAA 57.189 30.769 0.00 0.00 0.00 3.85
2584 3496 4.913335 TGCTACCTTCTATTAGGACACG 57.087 45.455 0.00 0.00 38.73 4.49
2630 3542 7.442969 ACTTGTCGTGATTTTACATCTAAACCA 59.557 33.333 0.00 0.00 0.00 3.67
2638 3550 7.656137 ACAACTAGACTTGTCGTGATTTTACAT 59.344 33.333 0.00 0.00 27.41 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.