Multiple sequence alignment - TraesCS4D01G359500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G359500 chr4D 100.000 3471 0 0 1 3471 506870480 506873950 0.000000e+00 6410.0
1 TraesCS4D01G359500 chr4D 100.000 2864 0 0 3831 6694 506874310 506877173 0.000000e+00 5289.0
2 TraesCS4D01G359500 chrUn 95.317 1623 68 7 1854 3471 255202650 255201031 0.000000e+00 2569.0
3 TraesCS4D01G359500 chrUn 94.191 964 47 6 5733 6694 255198098 255197142 0.000000e+00 1461.0
4 TraesCS4D01G359500 chrUn 94.191 964 47 6 5733 6694 339871750 339872706 0.000000e+00 1461.0
5 TraesCS4D01G359500 chrUn 95.658 714 30 1 887 1599 255203361 255202648 0.000000e+00 1146.0
6 TraesCS4D01G359500 chrUn 94.167 600 33 2 4568 5165 255199422 255198823 0.000000e+00 913.0
7 TraesCS4D01G359500 chrUn 90.123 486 36 5 340 823 255203834 255203359 7.370000e-174 621.0
8 TraesCS4D01G359500 chrUn 89.223 399 16 1 3831 4229 255200555 255200184 2.180000e-129 473.0
9 TraesCS4D01G359500 chrUn 91.418 268 22 1 1 267 255204112 255203845 3.810000e-97 366.0
10 TraesCS4D01G359500 chrUn 97.143 175 4 1 4393 4566 255199650 255199476 1.830000e-75 294.0
11 TraesCS4D01G359500 chrUn 91.228 57 3 2 2607 2662 71560801 71560856 7.200000e-10 76.8
12 TraesCS4D01G359500 chrUn 88.889 63 5 2 2607 2668 344577157 344577096 7.200000e-10 76.8
13 TraesCS4D01G359500 chr5A 90.959 1626 129 11 4599 6208 703182239 703183862 0.000000e+00 2172.0
14 TraesCS4D01G359500 chr5A 93.978 714 37 4 887 1600 703180906 703181613 0.000000e+00 1075.0
15 TraesCS4D01G359500 chr5A 84.795 513 61 10 229 733 703180134 703180637 3.600000e-137 499.0
16 TraesCS4D01G359500 chr5A 86.111 252 28 6 1596 1843 165330068 165329820 1.430000e-66 265.0
17 TraesCS4D01G359500 chr5A 73.563 261 63 6 5185 5442 705783473 705783730 1.990000e-15 95.3
18 TraesCS4D01G359500 chr5A 76.087 184 34 8 2485 2662 632195986 632196165 3.330000e-13 87.9
19 TraesCS4D01G359500 chr5A 84.932 73 9 1 1856 1928 414416161 414416091 9.310000e-09 73.1
20 TraesCS4D01G359500 chr4B 94.911 1179 58 2 4568 5744 664339868 664338690 0.000000e+00 1844.0
21 TraesCS4D01G359500 chr4B 95.149 1072 45 6 1854 2920 664342169 664341100 0.000000e+00 1685.0
22 TraesCS4D01G359500 chr4B 94.191 964 47 6 5733 6694 664338624 664337668 0.000000e+00 1461.0
23 TraesCS4D01G359500 chr4B 95.658 714 30 1 887 1599 664342880 664342167 0.000000e+00 1146.0
24 TraesCS4D01G359500 chr4B 92.152 739 28 4 3831 4566 664340633 664339922 0.000000e+00 1016.0
25 TraesCS4D01G359500 chr4B 90.123 486 36 5 340 823 664343353 664342878 7.370000e-174 621.0
26 TraesCS4D01G359500 chr4B 91.418 268 22 1 1 267 664343631 664343364 3.810000e-97 366.0
27 TraesCS4D01G359500 chr4B 73.563 261 63 6 5185 5442 665821475 665821732 1.990000e-15 95.3
28 TraesCS4D01G359500 chr5B 88.583 254 25 4 1610 1859 172626353 172626100 8.430000e-79 305.0
29 TraesCS4D01G359500 chr5D 87.547 265 27 6 1596 1856 175767938 175768200 1.090000e-77 302.0
30 TraesCS4D01G359500 chr5D 86.232 276 35 3 1597 1869 498682719 498682444 5.080000e-76 296.0
31 TraesCS4D01G359500 chr5D 91.549 71 4 1 1856 1924 426293890 426293820 5.530000e-16 97.1
32 TraesCS4D01G359500 chr3B 87.259 259 24 8 1604 1859 819739795 819739543 3.050000e-73 287.0
33 TraesCS4D01G359500 chr3B 74.595 185 43 4 5206 5388 224956462 224956280 2.000000e-10 78.7
34 TraesCS4D01G359500 chr2A 86.312 263 32 3 1598 1856 70660124 70659862 3.950000e-72 283.0
35 TraesCS4D01G359500 chr2A 77.143 175 36 4 5216 5388 448293678 448293506 1.540000e-16 99.0
36 TraesCS4D01G359500 chr2A 73.029 241 59 6 5207 5444 13003525 13003288 5.560000e-11 80.5
37 TraesCS4D01G359500 chr2A 74.057 212 42 10 2496 2699 648109367 648109161 2.590000e-09 75.0
38 TraesCS4D01G359500 chr7A 85.932 263 35 2 1598 1859 567679217 567678956 5.110000e-71 279.0
39 TraesCS4D01G359500 chr7A 85.496 262 34 4 1596 1855 540899251 540899510 3.080000e-68 270.0
40 TraesCS4D01G359500 chr7A 86.364 66 4 3 1856 1919 83783509 83783571 4.330000e-07 67.6
41 TraesCS4D01G359500 chr6D 84.586 266 37 3 1598 1860 380795412 380795676 1.850000e-65 261.0
42 TraesCS4D01G359500 chr6D 88.571 70 4 2 1856 1925 192109426 192109491 1.550000e-11 82.4
43 TraesCS4D01G359500 chr6B 78.191 188 37 2 2484 2668 27667916 27668102 4.240000e-22 117.0
44 TraesCS4D01G359500 chr2D 76.216 185 40 4 5206 5388 338330586 338330404 1.990000e-15 95.3
45 TraesCS4D01G359500 chr2D 97.059 34 1 0 857 890 125437673 125437640 2.610000e-04 58.4
46 TraesCS4D01G359500 chr3A 75.843 178 40 2 2488 2662 130863708 130863885 3.330000e-13 87.9
47 TraesCS4D01G359500 chr4A 88.571 70 1 6 1856 1920 588933591 588933524 2.000000e-10 78.7
48 TraesCS4D01G359500 chr6A 87.143 70 5 2 1856 1925 288406508 288406573 7.200000e-10 76.8
49 TraesCS4D01G359500 chr1B 89.394 66 0 5 1856 1920 113568416 113568357 7.200000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G359500 chr4D 506870480 506877173 6693 False 5849.500000 6410 100.000000 1 6694 2 chr4D.!!$F1 6693
1 TraesCS4D01G359500 chrUn 339871750 339872706 956 False 1461.000000 1461 94.191000 5733 6694 1 chrUn.!!$F2 961
2 TraesCS4D01G359500 chrUn 255197142 255204112 6970 True 980.375000 2569 93.405000 1 6694 8 chrUn.!!$R2 6693
3 TraesCS4D01G359500 chr5A 703180134 703183862 3728 False 1248.666667 2172 89.910667 229 6208 3 chr5A.!!$F3 5979
4 TraesCS4D01G359500 chr4B 664337668 664343631 5963 True 1162.714286 1844 93.371714 1 6694 7 chr4B.!!$R1 6693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 1032 0.032912 TGCATGGTACTCCCTCCGTA 60.033 55.0 0.00 0.0 0.00 4.02 F
1467 1667 0.606401 CACGTGGCCAAGGAGTTGAT 60.606 55.0 23.09 0.0 35.46 2.57 F
1831 2031 0.317854 GGTGAAAAGTCAAGCACGCC 60.318 55.0 0.00 0.0 34.87 5.68 F
2217 2465 0.530744 CTGCTGCTGCCAATTGATGT 59.469 50.0 13.47 0.0 38.71 3.06 F
4103 4476 0.034186 TGTCAATCCCCACAGATGCC 60.034 55.0 0.00 0.0 0.00 4.40 F
4104 4477 0.034186 GTCAATCCCCACAGATGCCA 60.034 55.0 0.00 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 2012 0.317854 GGCGTGCTTGACTTTTCACC 60.318 55.000 0.00 0.0 0.00 4.02 R
2701 2958 0.606604 TCTTGGTGTTAGGACTCGGC 59.393 55.000 0.00 0.0 0.00 5.54 R
3061 3318 0.670546 ACATGGCTCTCGACAAACGG 60.671 55.000 0.00 0.0 42.82 4.44 R
4141 4514 0.176449 GCACCCCTGGATTGATTTGC 59.824 55.000 0.00 0.0 0.00 3.68 R
5337 6135 0.033504 CGTACCTGCAGTTGGTCACT 59.966 55.000 13.81 0.0 38.88 3.41 R
5973 6937 1.448893 GGTTGCGATAACAGCCCGA 60.449 57.895 5.53 0.0 35.05 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.194005 ACTATGGGTTATGTTGGCGAG 57.806 47.619 0.00 0.00 0.00 5.03
55 56 1.208642 GCGAGCTTTGTGTTTGTGGC 61.209 55.000 0.00 0.00 0.00 5.01
76 77 3.897239 CCTTTCCATATGGGTGCTTGTA 58.103 45.455 21.78 0.00 38.11 2.41
81 82 4.968259 TCCATATGGGTGCTTGTATACAC 58.032 43.478 21.78 0.00 38.11 2.90
88 89 3.368116 GGGTGCTTGTATACACGAGAACT 60.368 47.826 13.19 0.00 42.57 3.01
98 99 2.748605 ACACGAGAACTTCTGCTTCTG 58.251 47.619 0.00 0.00 0.00 3.02
127 128 7.263100 TGTGATATATGTTGAGGAATGTTGC 57.737 36.000 0.00 0.00 0.00 4.17
130 131 8.355169 GTGATATATGTTGAGGAATGTTGCATT 58.645 33.333 0.00 0.00 0.00 3.56
151 152 6.346040 GCATTTAATGTTTCAGTGCTTGTGAC 60.346 38.462 6.81 0.00 0.00 3.67
158 159 1.075482 AGTGCTTGTGACATGGGGG 59.925 57.895 0.00 0.00 0.00 5.40
182 183 8.671921 GGGTTGTGAGATATATGAATTGCTATG 58.328 37.037 0.00 0.00 0.00 2.23
196 197 8.870160 TGAATTGCTATGTATGTTTAATTGGC 57.130 30.769 0.00 0.00 0.00 4.52
197 198 8.473219 TGAATTGCTATGTATGTTTAATTGGCA 58.527 29.630 0.00 0.00 0.00 4.92
201 202 5.010012 GCTATGTATGTTTAATTGGCAGGCT 59.990 40.000 0.00 0.00 0.00 4.58
204 205 7.601705 ATGTATGTTTAATTGGCAGGCTAAT 57.398 32.000 0.00 0.00 0.00 1.73
268 270 2.882137 GTGTAACACTAGGCAAAAGGCA 59.118 45.455 0.00 0.00 40.36 4.75
316 318 1.423541 AGGTGCCATGTTGGTTACTCA 59.576 47.619 0.00 0.00 40.46 3.41
341 343 4.884164 GGGAGTATTTATCATATGCCTGGC 59.116 45.833 12.87 12.87 0.00 4.85
404 406 2.048127 GCCAGTCGTCCGAAAGCT 60.048 61.111 0.00 0.00 0.00 3.74
485 487 5.911178 ACCTATGATTGGATGGTTAGGAAGA 59.089 40.000 0.00 0.00 32.38 2.87
498 507 0.606401 AGGAAGATGGTTGGTGCACG 60.606 55.000 11.45 0.00 0.00 5.34
547 556 2.578021 AGGCAACATTCCCATAGACAGT 59.422 45.455 0.00 0.00 41.41 3.55
578 587 8.659527 TGCCTATAATGACTTCCTCAATATCAA 58.340 33.333 0.00 0.00 29.28 2.57
758 957 1.686052 GTTGGTGAGATTTTGGGTGCA 59.314 47.619 0.00 0.00 0.00 4.57
783 982 2.224257 TGGATTGGGCTTGCAGTTTTTC 60.224 45.455 0.00 0.00 0.00 2.29
784 983 2.416747 GATTGGGCTTGCAGTTTTTCC 58.583 47.619 0.00 0.00 0.00 3.13
786 985 1.494960 TGGGCTTGCAGTTTTTCCTT 58.505 45.000 0.00 0.00 0.00 3.36
787 986 1.836802 TGGGCTTGCAGTTTTTCCTTT 59.163 42.857 0.00 0.00 0.00 3.11
788 987 2.238395 TGGGCTTGCAGTTTTTCCTTTT 59.762 40.909 0.00 0.00 0.00 2.27
789 988 3.278574 GGGCTTGCAGTTTTTCCTTTTT 58.721 40.909 0.00 0.00 0.00 1.94
812 1011 1.635844 TACGGCTATGAACGTTGCAG 58.364 50.000 5.00 6.21 43.79 4.41
827 1026 2.482326 GCAGTTGCATGGTACTCCC 58.518 57.895 0.00 0.00 41.59 4.30
828 1027 0.035056 GCAGTTGCATGGTACTCCCT 60.035 55.000 0.00 0.00 41.59 4.20
829 1028 2.014068 GCAGTTGCATGGTACTCCCTC 61.014 57.143 0.00 0.00 41.59 4.30
830 1029 0.912486 AGTTGCATGGTACTCCCTCC 59.088 55.000 0.00 0.00 0.00 4.30
831 1030 0.462047 GTTGCATGGTACTCCCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
832 1031 0.907704 TTGCATGGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
833 1032 0.032912 TGCATGGTACTCCCTCCGTA 60.033 55.000 0.00 0.00 0.00 4.02
834 1033 1.117150 GCATGGTACTCCCTCCGTAA 58.883 55.000 0.00 0.00 0.00 3.18
835 1034 1.483415 GCATGGTACTCCCTCCGTAAA 59.517 52.381 0.00 0.00 0.00 2.01
836 1035 2.093341 GCATGGTACTCCCTCCGTAAAA 60.093 50.000 0.00 0.00 0.00 1.52
837 1036 3.620472 GCATGGTACTCCCTCCGTAAAAA 60.620 47.826 0.00 0.00 0.00 1.94
862 1061 7.653767 AATATAAGTATGGTGCTCTAAACGC 57.346 36.000 0.00 0.00 0.00 4.84
863 1062 3.611766 AAGTATGGTGCTCTAAACGCT 57.388 42.857 0.00 0.00 0.00 5.07
864 1063 3.166489 AGTATGGTGCTCTAAACGCTC 57.834 47.619 0.00 0.00 0.00 5.03
865 1064 2.761208 AGTATGGTGCTCTAAACGCTCT 59.239 45.455 0.00 0.00 0.00 4.09
866 1065 3.952323 AGTATGGTGCTCTAAACGCTCTA 59.048 43.478 0.00 0.00 0.00 2.43
867 1066 3.887621 ATGGTGCTCTAAACGCTCTAA 57.112 42.857 0.00 0.00 0.00 2.10
868 1067 3.887621 TGGTGCTCTAAACGCTCTAAT 57.112 42.857 0.00 0.00 0.00 1.73
869 1068 4.994907 TGGTGCTCTAAACGCTCTAATA 57.005 40.909 0.00 0.00 0.00 0.98
870 1069 5.531122 TGGTGCTCTAAACGCTCTAATAT 57.469 39.130 0.00 0.00 0.00 1.28
871 1070 5.914033 TGGTGCTCTAAACGCTCTAATATT 58.086 37.500 0.00 0.00 0.00 1.28
872 1071 6.346096 TGGTGCTCTAAACGCTCTAATATTT 58.654 36.000 0.00 0.00 0.00 1.40
873 1072 6.479001 TGGTGCTCTAAACGCTCTAATATTTC 59.521 38.462 0.00 0.00 0.00 2.17
874 1073 6.702282 GGTGCTCTAAACGCTCTAATATTTCT 59.298 38.462 0.00 0.00 0.00 2.52
875 1074 7.224949 GGTGCTCTAAACGCTCTAATATTTCTT 59.775 37.037 0.00 0.00 0.00 2.52
876 1075 8.604890 GTGCTCTAAACGCTCTAATATTTCTTT 58.395 33.333 0.00 0.00 0.00 2.52
877 1076 9.811995 TGCTCTAAACGCTCTAATATTTCTTTA 57.188 29.630 0.00 0.00 0.00 1.85
884 1083 9.832445 AACGCTCTAATATTTCTTTATGAAGGA 57.168 29.630 0.00 0.00 35.89 3.36
885 1084 9.832445 ACGCTCTAATATTTCTTTATGAAGGAA 57.168 29.630 0.00 0.00 34.90 3.36
919 1118 4.335315 AGTTGTTGATGCTTTGACGAAAGA 59.665 37.500 1.03 0.00 41.12 2.52
923 1122 0.798776 ATGCTTTGACGAAAGAGGCG 59.201 50.000 1.03 0.00 41.12 5.52
1370 1570 3.005539 GGCCTGTCAGGGAGCTCA 61.006 66.667 20.72 0.00 35.37 4.26
1466 1666 1.227823 CACGTGGCCAAGGAGTTGA 60.228 57.895 23.09 0.00 35.46 3.18
1467 1667 0.606401 CACGTGGCCAAGGAGTTGAT 60.606 55.000 23.09 0.00 35.46 2.57
1600 1800 7.176340 AGTTTACTCCACTCGTTCTATTGTACT 59.824 37.037 0.00 0.00 0.00 2.73
1601 1801 5.564048 ACTCCACTCGTTCTATTGTACTC 57.436 43.478 0.00 0.00 0.00 2.59
1602 1802 4.398673 ACTCCACTCGTTCTATTGTACTCC 59.601 45.833 0.00 0.00 0.00 3.85
1603 1803 3.698040 TCCACTCGTTCTATTGTACTCCC 59.302 47.826 0.00 0.00 0.00 4.30
1604 1804 3.700038 CCACTCGTTCTATTGTACTCCCT 59.300 47.826 0.00 0.00 0.00 4.20
1605 1805 4.202030 CCACTCGTTCTATTGTACTCCCTC 60.202 50.000 0.00 0.00 0.00 4.30
1606 1806 3.952967 ACTCGTTCTATTGTACTCCCTCC 59.047 47.826 0.00 0.00 0.00 4.30
1607 1807 4.208746 CTCGTTCTATTGTACTCCCTCCT 58.791 47.826 0.00 0.00 0.00 3.69
1608 1808 4.607239 TCGTTCTATTGTACTCCCTCCTT 58.393 43.478 0.00 0.00 0.00 3.36
1609 1809 4.643784 TCGTTCTATTGTACTCCCTCCTTC 59.356 45.833 0.00 0.00 0.00 3.46
1610 1810 4.202131 CGTTCTATTGTACTCCCTCCTTCC 60.202 50.000 0.00 0.00 0.00 3.46
1611 1811 4.901785 TCTATTGTACTCCCTCCTTCCT 57.098 45.455 0.00 0.00 0.00 3.36
1612 1812 6.134754 GTTCTATTGTACTCCCTCCTTCCTA 58.865 44.000 0.00 0.00 0.00 2.94
1613 1813 6.351317 TCTATTGTACTCCCTCCTTCCTAA 57.649 41.667 0.00 0.00 0.00 2.69
1614 1814 6.748969 TCTATTGTACTCCCTCCTTCCTAAA 58.251 40.000 0.00 0.00 0.00 1.85
1615 1815 7.194050 TCTATTGTACTCCCTCCTTCCTAAAA 58.806 38.462 0.00 0.00 0.00 1.52
1616 1816 6.910259 ATTGTACTCCCTCCTTCCTAAAAT 57.090 37.500 0.00 0.00 0.00 1.82
1617 1817 9.155785 CTATTGTACTCCCTCCTTCCTAAAATA 57.844 37.037 0.00 0.00 0.00 1.40
1618 1818 8.582891 ATTGTACTCCCTCCTTCCTAAAATAT 57.417 34.615 0.00 0.00 0.00 1.28
1619 1819 9.684702 ATTGTACTCCCTCCTTCCTAAAATATA 57.315 33.333 0.00 0.00 0.00 0.86
1620 1820 9.510062 TTGTACTCCCTCCTTCCTAAAATATAA 57.490 33.333 0.00 0.00 0.00 0.98
1621 1821 9.155785 TGTACTCCCTCCTTCCTAAAATATAAG 57.844 37.037 0.00 0.00 0.00 1.73
1622 1822 7.634526 ACTCCCTCCTTCCTAAAATATAAGG 57.365 40.000 0.00 0.00 39.93 2.69
1623 1823 7.147195 ACTCCCTCCTTCCTAAAATATAAGGT 58.853 38.462 0.00 0.00 39.62 3.50
1624 1824 7.072581 ACTCCCTCCTTCCTAAAATATAAGGTG 59.927 40.741 0.00 0.00 39.62 4.00
1625 1825 6.004574 CCCTCCTTCCTAAAATATAAGGTGC 58.995 44.000 0.00 0.00 39.62 5.01
1626 1826 6.410388 CCCTCCTTCCTAAAATATAAGGTGCA 60.410 42.308 0.00 0.00 39.62 4.57
1627 1827 6.486993 CCTCCTTCCTAAAATATAAGGTGCAC 59.513 42.308 8.80 8.80 39.62 4.57
1628 1828 6.964464 TCCTTCCTAAAATATAAGGTGCACA 58.036 36.000 20.43 0.00 39.62 4.57
1629 1829 7.582719 TCCTTCCTAAAATATAAGGTGCACAT 58.417 34.615 20.43 9.24 39.62 3.21
1630 1830 8.058847 TCCTTCCTAAAATATAAGGTGCACATT 58.941 33.333 21.58 21.58 39.62 2.71
1631 1831 9.349713 CCTTCCTAAAATATAAGGTGCACATTA 57.650 33.333 24.50 24.50 34.92 1.90
1634 1834 9.914834 TCCTAAAATATAAGGTGCACATTAACT 57.085 29.630 25.81 14.20 34.30 2.24
1657 1857 4.734398 TTTTGGTCTTCATTGCACAACT 57.266 36.364 0.00 0.00 0.00 3.16
1658 1858 4.734398 TTTGGTCTTCATTGCACAACTT 57.266 36.364 0.00 0.00 0.00 2.66
1659 1859 3.988379 TGGTCTTCATTGCACAACTTC 57.012 42.857 0.00 0.00 0.00 3.01
1660 1860 3.286353 TGGTCTTCATTGCACAACTTCA 58.714 40.909 0.00 0.00 0.00 3.02
1661 1861 3.066621 TGGTCTTCATTGCACAACTTCAC 59.933 43.478 0.00 0.00 0.00 3.18
1662 1862 3.316308 GGTCTTCATTGCACAACTTCACT 59.684 43.478 0.00 0.00 0.00 3.41
1663 1863 4.515191 GGTCTTCATTGCACAACTTCACTA 59.485 41.667 0.00 0.00 0.00 2.74
1664 1864 5.182001 GGTCTTCATTGCACAACTTCACTAT 59.818 40.000 0.00 0.00 0.00 2.12
1665 1865 6.082338 GTCTTCATTGCACAACTTCACTATG 58.918 40.000 0.00 0.00 0.00 2.23
1666 1866 5.997129 TCTTCATTGCACAACTTCACTATGA 59.003 36.000 0.00 0.00 0.00 2.15
1667 1867 6.656270 TCTTCATTGCACAACTTCACTATGAT 59.344 34.615 0.00 0.00 0.00 2.45
1668 1868 6.822667 TCATTGCACAACTTCACTATGATT 57.177 33.333 0.00 0.00 0.00 2.57
1669 1869 7.218228 TCATTGCACAACTTCACTATGATTT 57.782 32.000 0.00 0.00 0.00 2.17
1670 1870 7.660112 TCATTGCACAACTTCACTATGATTTT 58.340 30.769 0.00 0.00 0.00 1.82
1671 1871 7.809331 TCATTGCACAACTTCACTATGATTTTC 59.191 33.333 0.00 0.00 0.00 2.29
1672 1872 6.631971 TGCACAACTTCACTATGATTTTCA 57.368 33.333 0.00 0.00 0.00 2.69
1673 1873 6.437928 TGCACAACTTCACTATGATTTTCAC 58.562 36.000 0.00 0.00 0.00 3.18
1674 1874 6.039159 TGCACAACTTCACTATGATTTTCACA 59.961 34.615 0.00 0.00 0.00 3.58
1675 1875 7.086376 GCACAACTTCACTATGATTTTCACAT 58.914 34.615 0.00 0.00 0.00 3.21
1676 1876 8.236586 GCACAACTTCACTATGATTTTCACATA 58.763 33.333 0.00 0.00 0.00 2.29
1780 1980 8.633075 CATGTTCAATCCATGTATTTTGGTAC 57.367 34.615 0.00 0.00 35.94 3.34
1781 1981 7.767250 TGTTCAATCCATGTATTTTGGTACA 57.233 32.000 0.00 0.00 38.79 2.90
1782 1982 8.359875 TGTTCAATCCATGTATTTTGGTACAT 57.640 30.769 0.00 0.00 44.04 2.29
1783 1983 9.467796 TGTTCAATCCATGTATTTTGGTACATA 57.532 29.630 0.00 0.00 41.96 2.29
1799 1999 9.521841 TTTGGTACATATTAATGGTCAAAGTCA 57.478 29.630 0.00 0.00 39.30 3.41
1800 2000 9.693739 TTGGTACATATTAATGGTCAAAGTCAT 57.306 29.630 0.00 0.00 39.30 3.06
1801 2001 9.119418 TGGTACATATTAATGGTCAAAGTCATG 57.881 33.333 0.00 0.00 37.43 3.07
1802 2002 8.076178 GGTACATATTAATGGTCAAAGTCATGC 58.924 37.037 0.00 0.00 37.43 4.06
1803 2003 7.643569 ACATATTAATGGTCAAAGTCATGCA 57.356 32.000 0.00 0.00 37.43 3.96
1804 2004 8.241497 ACATATTAATGGTCAAAGTCATGCAT 57.759 30.769 0.00 0.00 37.43 3.96
1805 2005 8.355169 ACATATTAATGGTCAAAGTCATGCATC 58.645 33.333 0.00 0.00 37.43 3.91
1806 2006 6.778834 ATTAATGGTCAAAGTCATGCATCA 57.221 33.333 0.00 0.00 0.00 3.07
1807 2007 4.445452 AATGGTCAAAGTCATGCATCAC 57.555 40.909 0.00 0.00 0.00 3.06
1808 2008 2.861274 TGGTCAAAGTCATGCATCACA 58.139 42.857 2.74 0.00 0.00 3.58
1809 2009 2.815503 TGGTCAAAGTCATGCATCACAG 59.184 45.455 2.74 0.00 0.00 3.66
1810 2010 3.076621 GGTCAAAGTCATGCATCACAGA 58.923 45.455 2.74 0.00 0.00 3.41
1811 2011 3.120060 GGTCAAAGTCATGCATCACAGAC 60.120 47.826 2.74 7.85 0.00 3.51
1812 2012 2.738314 TCAAAGTCATGCATCACAGACG 59.262 45.455 2.74 0.00 33.94 4.18
1813 2013 1.730501 AAGTCATGCATCACAGACGG 58.269 50.000 2.74 0.00 33.94 4.79
1814 2014 0.610174 AGTCATGCATCACAGACGGT 59.390 50.000 2.74 0.00 33.94 4.83
1826 2026 1.940613 ACAGACGGTGAAAAGTCAAGC 59.059 47.619 0.00 0.00 39.67 4.01
1827 2027 1.939934 CAGACGGTGAAAAGTCAAGCA 59.060 47.619 0.00 0.00 39.67 3.91
1828 2028 1.940613 AGACGGTGAAAAGTCAAGCAC 59.059 47.619 0.00 0.00 39.67 4.40
1829 2029 0.655733 ACGGTGAAAAGTCAAGCACG 59.344 50.000 0.00 0.00 34.87 5.34
1830 2030 0.657368 CGGTGAAAAGTCAAGCACGC 60.657 55.000 0.00 0.00 34.87 5.34
1831 2031 0.317854 GGTGAAAAGTCAAGCACGCC 60.318 55.000 0.00 0.00 34.87 5.68
1832 2032 0.663153 GTGAAAAGTCAAGCACGCCT 59.337 50.000 0.00 0.00 34.87 5.52
1833 2033 1.065551 GTGAAAAGTCAAGCACGCCTT 59.934 47.619 0.00 0.00 34.87 4.35
1834 2034 2.289547 GTGAAAAGTCAAGCACGCCTTA 59.710 45.455 0.00 0.00 34.87 2.69
1835 2035 3.058224 GTGAAAAGTCAAGCACGCCTTAT 60.058 43.478 0.00 0.00 34.87 1.73
1836 2036 4.153475 GTGAAAAGTCAAGCACGCCTTATA 59.847 41.667 0.00 0.00 34.87 0.98
1837 2037 4.941263 TGAAAAGTCAAGCACGCCTTATAT 59.059 37.500 0.00 0.00 31.00 0.86
1838 2038 5.414454 TGAAAAGTCAAGCACGCCTTATATT 59.586 36.000 0.00 0.00 31.00 1.28
1839 2039 5.897377 AAAGTCAAGCACGCCTTATATTT 57.103 34.783 0.00 0.00 31.00 1.40
1840 2040 5.897377 AAGTCAAGCACGCCTTATATTTT 57.103 34.783 0.00 0.00 31.00 1.82
1841 2041 5.235305 AGTCAAGCACGCCTTATATTTTG 57.765 39.130 0.00 0.00 31.00 2.44
1842 2042 4.096382 AGTCAAGCACGCCTTATATTTTGG 59.904 41.667 0.00 0.00 31.00 3.28
1843 2043 4.095782 GTCAAGCACGCCTTATATTTTGGA 59.904 41.667 0.00 0.00 31.00 3.53
1844 2044 4.702612 TCAAGCACGCCTTATATTTTGGAA 59.297 37.500 0.00 0.00 31.00 3.53
1845 2045 5.184096 TCAAGCACGCCTTATATTTTGGAAA 59.816 36.000 0.00 0.00 31.00 3.13
1846 2046 5.248870 AGCACGCCTTATATTTTGGAAAG 57.751 39.130 0.00 0.00 0.00 2.62
1847 2047 4.097892 AGCACGCCTTATATTTTGGAAAGG 59.902 41.667 0.00 0.00 41.23 3.11
1848 2048 4.097286 GCACGCCTTATATTTTGGAAAGGA 59.903 41.667 4.19 0.00 40.85 3.36
1849 2049 5.733373 GCACGCCTTATATTTTGGAAAGGAG 60.733 44.000 4.19 3.40 42.52 3.69
1850 2050 4.887655 ACGCCTTATATTTTGGAAAGGAGG 59.112 41.667 4.19 0.00 41.54 4.30
1851 2051 4.278419 CGCCTTATATTTTGGAAAGGAGGG 59.722 45.833 4.19 0.00 40.85 4.30
1852 2052 5.454966 GCCTTATATTTTGGAAAGGAGGGA 58.545 41.667 4.19 0.00 40.85 4.20
1913 2113 4.813027 TCTAGACACGTGTAATTTGGGAC 58.187 43.478 23.44 5.60 0.00 4.46
1933 2133 5.994054 GGGACGGAGGTAATAATTTCTAACC 59.006 44.000 0.00 0.00 0.00 2.85
1941 2173 9.254133 GAGGTAATAATTTCTAACCGTAAGTCC 57.746 37.037 0.00 0.00 35.32 3.85
2216 2464 0.806102 GCTGCTGCTGCCAATTGATG 60.806 55.000 19.30 0.00 38.71 3.07
2217 2465 0.530744 CTGCTGCTGCCAATTGATGT 59.469 50.000 13.47 0.00 38.71 3.06
2576 2831 7.083230 GTCTCTAAGTAGTGTAGGTGACAAAC 58.917 42.308 0.00 0.00 40.66 2.93
2617 2872 6.262944 GGAATAACCACTGCATATTGATGTCA 59.737 38.462 0.00 0.00 38.79 3.58
2711 2968 1.697432 CATATTTGGGGCCGAGTCCTA 59.303 52.381 0.00 0.00 0.00 2.94
2731 2988 5.642063 TCCTAACACCAAGATGTTTCGAATC 59.358 40.000 0.00 0.00 39.86 2.52
2740 2997 6.318648 CCAAGATGTTTCGAATCCCTTTCATA 59.681 38.462 0.00 0.00 33.66 2.15
2755 3012 6.103205 TCCCTTTCATATTCTTGGATAAGGCT 59.897 38.462 0.00 0.00 34.59 4.58
2789 3046 7.505923 AGGCTAAAGAACACAAGTAGGATTTTT 59.494 33.333 0.00 0.00 0.00 1.94
2811 3068 6.740411 TTCAAGCCAATTATGCCATTTTTC 57.260 33.333 0.00 0.00 0.00 2.29
2818 3075 3.667497 TTATGCCATTTTTCCGTGCAA 57.333 38.095 0.00 0.00 35.30 4.08
2827 3084 6.312672 GCCATTTTTCCGTGCAATTATAGTTT 59.687 34.615 0.00 0.00 0.00 2.66
3010 3267 7.996788 AGAAAATAAGGGAGTAGAAAAAGGGA 58.003 34.615 0.00 0.00 0.00 4.20
3020 3277 7.926555 GGGAGTAGAAAAAGGGAAAAGAAAAAG 59.073 37.037 0.00 0.00 0.00 2.27
3061 3318 2.937149 GGAAGGAACTCGGTAAAGCATC 59.063 50.000 0.00 0.00 38.49 3.91
3167 3424 7.045126 TGGAACTCGGTAAATTTCATGTTTT 57.955 32.000 0.00 0.00 0.00 2.43
3226 3483 5.641709 GCACTAGGCCAAATTCTAGTTTTC 58.358 41.667 5.01 0.00 42.26 2.29
3244 3501 6.765403 AGTTTTCAGTAGTGCAAGTATGGTA 58.235 36.000 0.00 0.00 0.00 3.25
3248 3505 9.899661 TTTTCAGTAGTGCAAGTATGGTATTAT 57.100 29.630 0.00 0.00 0.00 1.28
3263 3520 8.947115 GTATGGTATTATAGAGGGTGCAAATTC 58.053 37.037 0.00 0.00 0.00 2.17
3269 3526 5.975693 ATAGAGGGTGCAAATTCGAAAAA 57.024 34.783 0.00 0.00 0.00 1.94
3307 3564 6.538381 GGTTTAAAATCAAATACTGGCCATGG 59.462 38.462 5.51 7.63 0.00 3.66
3359 3616 6.192234 AGAGCAATGTCATTTGAATCTCAC 57.808 37.500 0.00 0.00 0.00 3.51
3361 3618 6.433404 AGAGCAATGTCATTTGAATCTCACTT 59.567 34.615 0.00 0.00 0.00 3.16
3364 3621 4.771590 TGTCATTTGAATCTCACTTGGC 57.228 40.909 0.00 0.00 0.00 4.52
3401 3658 3.054655 GCCCCACTACCTTTTAGTCATCA 60.055 47.826 0.00 0.00 0.00 3.07
3443 3700 1.075374 TGGTCCAAGCCTTAGTTGCAT 59.925 47.619 0.00 0.00 0.00 3.96
3886 4259 9.657121 GTAGATACAAATTGTACGTAGGAGTAC 57.343 37.037 8.12 0.78 45.22 2.73
3902 4275 5.079643 AGGAGTACCAAGATGCAAAATTGT 58.920 37.500 0.00 0.00 38.94 2.71
3912 4285 3.090952 TGCAAAATTGTACAGTGCACC 57.909 42.857 14.63 0.00 40.14 5.01
3938 4311 8.227791 CGTATGCTTTGTCAACATTACTAGTTT 58.772 33.333 0.00 0.00 0.00 2.66
3960 4333 7.504238 AGTTTGTGATCTATCCTAGTACAGAGG 59.496 40.741 7.39 7.39 35.17 3.69
4087 4460 2.019984 GGATCTCAAAGCACCCATGTC 58.980 52.381 0.00 0.00 0.00 3.06
4089 4462 2.655090 TCTCAAAGCACCCATGTCAA 57.345 45.000 0.00 0.00 0.00 3.18
4090 4463 3.159213 TCTCAAAGCACCCATGTCAAT 57.841 42.857 0.00 0.00 0.00 2.57
4091 4464 3.084039 TCTCAAAGCACCCATGTCAATC 58.916 45.455 0.00 0.00 0.00 2.67
4092 4465 2.165030 CTCAAAGCACCCATGTCAATCC 59.835 50.000 0.00 0.00 0.00 3.01
4093 4466 1.205417 CAAAGCACCCATGTCAATCCC 59.795 52.381 0.00 0.00 0.00 3.85
4094 4467 0.324645 AAGCACCCATGTCAATCCCC 60.325 55.000 0.00 0.00 0.00 4.81
4095 4468 1.000233 GCACCCATGTCAATCCCCA 60.000 57.895 0.00 0.00 0.00 4.96
4096 4469 1.322538 GCACCCATGTCAATCCCCAC 61.323 60.000 0.00 0.00 0.00 4.61
4097 4470 0.039472 CACCCATGTCAATCCCCACA 59.961 55.000 0.00 0.00 0.00 4.17
4098 4471 0.332632 ACCCATGTCAATCCCCACAG 59.667 55.000 0.00 0.00 0.00 3.66
4099 4472 0.625316 CCCATGTCAATCCCCACAGA 59.375 55.000 0.00 0.00 0.00 3.41
4100 4473 1.216175 CCCATGTCAATCCCCACAGAT 59.784 52.381 0.00 0.00 0.00 2.90
4101 4474 2.304092 CCATGTCAATCCCCACAGATG 58.696 52.381 0.00 0.00 0.00 2.90
4102 4475 1.679680 CATGTCAATCCCCACAGATGC 59.320 52.381 0.00 0.00 0.00 3.91
4103 4476 0.034186 TGTCAATCCCCACAGATGCC 60.034 55.000 0.00 0.00 0.00 4.40
4104 4477 0.034186 GTCAATCCCCACAGATGCCA 60.034 55.000 0.00 0.00 0.00 4.92
4105 4478 0.034186 TCAATCCCCACAGATGCCAC 60.034 55.000 0.00 0.00 0.00 5.01
4106 4479 0.323633 CAATCCCCACAGATGCCACA 60.324 55.000 0.00 0.00 0.00 4.17
4107 4480 0.323725 AATCCCCACAGATGCCACAC 60.324 55.000 0.00 0.00 0.00 3.82
4108 4481 2.215451 ATCCCCACAGATGCCACACC 62.215 60.000 0.00 0.00 0.00 4.16
4109 4482 2.435663 CCCACAGATGCCACACCA 59.564 61.111 0.00 0.00 0.00 4.17
4110 4483 1.973281 CCCACAGATGCCACACCAC 60.973 63.158 0.00 0.00 0.00 4.16
4111 4484 1.973281 CCACAGATGCCACACCACC 60.973 63.158 0.00 0.00 0.00 4.61
4112 4485 1.073722 CACAGATGCCACACCACCT 59.926 57.895 0.00 0.00 0.00 4.00
4113 4486 0.957395 CACAGATGCCACACCACCTC 60.957 60.000 0.00 0.00 0.00 3.85
4114 4487 1.130054 ACAGATGCCACACCACCTCT 61.130 55.000 0.00 0.00 0.00 3.69
4115 4488 0.675837 CAGATGCCACACCACCTCTG 60.676 60.000 0.00 0.00 0.00 3.35
4116 4489 1.377725 GATGCCACACCACCTCTGG 60.378 63.158 0.00 0.00 44.26 3.86
4134 4507 3.136443 TCTGGTGTGTGAGAAGGACATTT 59.864 43.478 0.00 0.00 0.00 2.32
4141 4514 3.817084 TGTGAGAAGGACATTTGCAGAAG 59.183 43.478 0.00 0.00 0.00 2.85
4237 4610 7.776107 TGATCACAACACTTTGGAAAATGTAA 58.224 30.769 0.00 0.00 37.00 2.41
4238 4611 8.420222 TGATCACAACACTTTGGAAAATGTAAT 58.580 29.630 0.00 0.00 37.00 1.89
4240 4613 7.206687 TCACAACACTTTGGAAAATGTAATCC 58.793 34.615 0.00 0.00 37.00 3.01
4256 4629 6.573664 TGTAATCCATTTGGTTGAGTTGAG 57.426 37.500 0.00 0.00 36.34 3.02
4275 4648 6.381707 AGTTGAGGAGAGATAAAGGGTACTTC 59.618 42.308 0.00 0.00 35.41 3.01
4288 4661 5.532664 AGGGTACTTCGAGGATTACAATC 57.467 43.478 0.00 0.00 34.66 2.67
4310 4683 6.983906 TCTTGCATCCTTATCTCTATGACA 57.016 37.500 0.00 0.00 0.00 3.58
4315 4688 6.112058 GCATCCTTATCTCTATGACAATCCC 58.888 44.000 0.00 0.00 0.00 3.85
4416 5159 0.036732 AAGCCATGCCTCGAGACAAA 59.963 50.000 15.71 0.00 0.00 2.83
4543 5287 5.105797 ACAACAAATGGTGCATATGTCGATT 60.106 36.000 4.29 4.84 35.82 3.34
4566 5310 6.531503 TGGGTCTACATTAAGAGTCTTGAG 57.468 41.667 15.90 7.46 0.00 3.02
4628 5426 7.977293 TGTGTGTGTGGACTGTAATGTATATAC 59.023 37.037 5.89 5.89 0.00 1.47
4667 5465 3.479489 ACACATGCACAACAGATGAGAA 58.521 40.909 0.00 0.00 0.00 2.87
4735 5533 0.673333 AATGATCAGCAACGTCCGCA 60.673 50.000 11.95 0.00 0.00 5.69
4760 5558 0.323629 GACCTCCCAACGTTCATCCA 59.676 55.000 0.00 0.00 0.00 3.41
4869 5667 2.166459 CACCTTCGATGACCTAGAGCAA 59.834 50.000 0.00 0.00 0.00 3.91
4876 5674 0.956633 TGACCTAGAGCAAACGTCGT 59.043 50.000 0.00 0.00 0.00 4.34
4933 5731 0.596083 CATCGGACCACTCATCTCGC 60.596 60.000 0.00 0.00 0.00 5.03
4966 5764 0.041238 TCCATCCCTCACCTCGAGTT 59.959 55.000 12.31 0.00 40.48 3.01
4995 5793 4.833478 AGAGGACAATGTATGCACTTCT 57.167 40.909 0.00 0.00 0.00 2.85
5094 5892 1.073548 GGAGTTTGCACGGGGGTTA 59.926 57.895 0.00 0.00 0.00 2.85
5337 6135 1.308069 GGCCATTCTTCGCTGAGCAA 61.308 55.000 4.88 0.00 0.00 3.91
5504 6302 1.668294 CAGAGAAGGCAGTCACGGT 59.332 57.895 0.00 0.00 0.00 4.83
5514 6312 2.067605 AGTCACGGTGGGTGGTTCA 61.068 57.895 8.50 0.00 46.96 3.18
5520 6318 2.332654 GGTGGGTGGTTCATCGCAC 61.333 63.158 0.00 0.00 43.47 5.34
5604 6402 8.934023 ACTCTGGGAAATGATAAAAGTACAAA 57.066 30.769 0.00 0.00 0.00 2.83
5637 6437 5.846203 ACTGTGCAAAGAAATTTGTGCTAT 58.154 33.333 11.93 0.00 37.87 2.97
5727 6527 6.774656 AGAGATGGGAAATTAATTACTGCTGG 59.225 38.462 0.01 0.00 0.00 4.85
5751 6705 6.954684 GGTCCCATATGATATATACGAGGGAT 59.045 42.308 3.65 0.00 43.98 3.85
5773 6727 6.238566 GGATAGACGTACAGTGTAGTTGCATA 60.239 42.308 2.39 0.00 31.79 3.14
5936 6894 1.270625 TGTAGGGAACAGGCAAAGTCG 60.271 52.381 0.00 0.00 33.01 4.18
5973 6937 9.579932 GATAGAATAGGATGGGTCTTTCATTTT 57.420 33.333 0.00 0.00 0.00 1.82
6002 6966 7.041644 GGCTGTTATCGCAACCTAATTAACATA 60.042 37.037 0.00 0.00 0.00 2.29
6091 7055 7.819900 GTCCCGAGTAAATTTATGCAGATAGAT 59.180 37.037 0.31 0.00 0.00 1.98
6126 7092 7.478322 CAATGTTAACCTCTCATTCCTCAATG 58.522 38.462 2.48 0.00 40.91 2.82
6261 7227 8.242053 ACATGACAAAGATGCAAATAGAAAGAG 58.758 33.333 0.00 0.00 0.00 2.85
6288 7254 1.794714 TAAGTGATGCCTCCCTCTCC 58.205 55.000 0.00 0.00 0.00 3.71
6300 7266 1.147153 CCTCTCCGAGCAAATCCCC 59.853 63.158 0.00 0.00 0.00 4.81
6309 7275 3.447229 CCGAGCAAATCCCCAAAAACTAT 59.553 43.478 0.00 0.00 0.00 2.12
6312 7278 5.405935 AGCAAATCCCCAAAAACTATCAC 57.594 39.130 0.00 0.00 0.00 3.06
6330 7296 5.750352 ATCACAATTCTGGCCTCATTTTT 57.250 34.783 3.32 0.00 0.00 1.94
6332 7298 3.998341 CACAATTCTGGCCTCATTTTTGG 59.002 43.478 3.32 0.00 0.00 3.28
6333 7299 3.903090 ACAATTCTGGCCTCATTTTTGGA 59.097 39.130 3.32 0.00 0.00 3.53
6334 7300 4.347583 ACAATTCTGGCCTCATTTTTGGAA 59.652 37.500 3.32 0.00 0.00 3.53
6335 7301 4.813750 ATTCTGGCCTCATTTTTGGAAG 57.186 40.909 3.32 0.00 0.00 3.46
6336 7302 3.524095 TCTGGCCTCATTTTTGGAAGA 57.476 42.857 3.32 0.00 0.00 2.87
6398 7365 6.208402 TGCTGGCATTAGTAATCTTTTTGACA 59.792 34.615 0.00 0.00 0.00 3.58
6498 7465 0.865769 AACCGCACATCGTTTGACTC 59.134 50.000 0.00 0.00 36.19 3.36
6501 7468 1.262950 CCGCACATCGTTTGACTCAAA 59.737 47.619 0.00 0.00 36.19 2.69
6650 7617 0.606130 TGACATCTGGTGCACGCAAT 60.606 50.000 11.45 0.46 0.00 3.56
6652 7619 1.061411 CATCTGGTGCACGCAATCG 59.939 57.895 11.45 0.00 42.43 3.34
6654 7621 2.803155 ATCTGGTGCACGCAATCGGT 62.803 55.000 11.45 0.00 40.69 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.933181 GAAAGGCCACAAACACAAAGC 59.067 47.619 5.01 0.00 0.00 3.51
55 56 2.738743 ACAAGCACCCATATGGAAAGG 58.261 47.619 24.00 8.73 37.39 3.11
76 77 4.218635 TCAGAAGCAGAAGTTCTCGTGTAT 59.781 41.667 1.26 0.00 31.64 2.29
81 82 3.296322 AGTCAGAAGCAGAAGTTCTCG 57.704 47.619 1.26 0.32 31.64 4.04
88 89 8.043113 ACATATATCACAAAGTCAGAAGCAGAA 58.957 33.333 0.00 0.00 0.00 3.02
98 99 9.113838 ACATTCCTCAACATATATCACAAAGTC 57.886 33.333 0.00 0.00 0.00 3.01
127 128 6.696583 TGTCACAAGCACTGAAACATTAAATG 59.303 34.615 0.00 0.00 0.00 2.32
130 131 5.826601 TGTCACAAGCACTGAAACATTAA 57.173 34.783 0.00 0.00 0.00 1.40
151 152 5.503634 TCATATATCTCACAACCCCCATG 57.496 43.478 0.00 0.00 0.00 3.66
182 183 6.200854 GCAATTAGCCTGCCAATTAAACATAC 59.799 38.462 0.00 0.00 37.23 2.39
189 190 2.649190 TCGCAATTAGCCTGCCAATTA 58.351 42.857 0.00 0.00 41.38 1.40
196 197 6.942886 TTAATTTGTTTCGCAATTAGCCTG 57.057 33.333 0.00 0.00 41.38 4.85
197 198 7.954788 TTTTAATTTGTTTCGCAATTAGCCT 57.045 28.000 0.00 0.00 41.38 4.58
223 224 7.223387 CACTTAGCAAAGCTTTTGTCAGAATTT 59.777 33.333 9.53 0.00 40.44 1.82
224 225 6.698766 CACTTAGCAAAGCTTTTGTCAGAATT 59.301 34.615 9.53 0.00 40.44 2.17
225 226 6.183360 ACACTTAGCAAAGCTTTTGTCAGAAT 60.183 34.615 9.53 0.00 40.44 2.40
316 318 6.666678 CCAGGCATATGATAAATACTCCCAT 58.333 40.000 6.97 0.00 0.00 4.00
323 325 5.939883 GTCACTGCCAGGCATATGATAAATA 59.060 40.000 24.61 5.50 38.13 1.40
341 343 1.524355 CGTCTTTGCTGAGTGTCACTG 59.476 52.381 11.04 0.00 0.00 3.66
372 374 4.109675 GGCGGGCTTCTAGGGCAA 62.110 66.667 9.97 0.00 0.00 4.52
438 440 7.499895 AGGTTAGTTCTCAACAACCGATTAAAA 59.500 33.333 11.65 0.00 42.34 1.52
485 487 1.812571 GATTCTTCGTGCACCAACCAT 59.187 47.619 12.15 0.00 0.00 3.55
498 507 9.617975 CCACTAAAAGAATGAGTTTGATTCTTC 57.382 33.333 7.91 0.00 45.35 2.87
547 556 5.366477 TGAGGAAGTCATTATAGGCACATCA 59.634 40.000 0.00 0.00 0.00 3.07
682 691 2.794350 CGCTCACGTACATGCATATTCA 59.206 45.455 0.00 0.00 33.53 2.57
758 957 0.971386 CTGCAAGCCCAATCCAAGTT 59.029 50.000 0.00 0.00 0.00 2.66
789 988 3.250280 TGCAACGTTCATAGCCGTAAAAA 59.750 39.130 0.00 0.00 36.04 1.94
790 989 2.806818 TGCAACGTTCATAGCCGTAAAA 59.193 40.909 0.00 0.00 36.04 1.52
792 991 1.996898 CTGCAACGTTCATAGCCGTAA 59.003 47.619 0.00 0.00 36.04 3.18
793 992 1.067425 ACTGCAACGTTCATAGCCGTA 60.067 47.619 0.00 0.00 36.04 4.02
794 993 0.320421 ACTGCAACGTTCATAGCCGT 60.320 50.000 0.00 0.00 39.32 5.68
795 994 0.796312 AACTGCAACGTTCATAGCCG 59.204 50.000 0.00 0.00 0.00 5.52
796 995 1.729149 GCAACTGCAACGTTCATAGCC 60.729 52.381 0.00 0.00 41.59 3.93
797 996 1.606606 GCAACTGCAACGTTCATAGC 58.393 50.000 0.00 0.00 41.59 2.97
812 1011 0.462047 CGGAGGGAGTACCATGCAAC 60.462 60.000 0.00 0.00 43.89 4.17
836 1035 8.557029 GCGTTTAGAGCACCATACTTATATTTT 58.443 33.333 0.00 0.00 34.19 1.82
837 1036 7.931948 AGCGTTTAGAGCACCATACTTATATTT 59.068 33.333 0.00 0.00 37.01 1.40
838 1037 7.442656 AGCGTTTAGAGCACCATACTTATATT 58.557 34.615 0.00 0.00 37.01 1.28
839 1038 6.994221 AGCGTTTAGAGCACCATACTTATAT 58.006 36.000 0.00 0.00 37.01 0.86
840 1039 6.264744 AGAGCGTTTAGAGCACCATACTTATA 59.735 38.462 0.00 0.00 37.01 0.98
841 1040 5.069251 AGAGCGTTTAGAGCACCATACTTAT 59.931 40.000 0.00 0.00 37.01 1.73
842 1041 4.401519 AGAGCGTTTAGAGCACCATACTTA 59.598 41.667 0.00 0.00 37.01 2.24
843 1042 3.195825 AGAGCGTTTAGAGCACCATACTT 59.804 43.478 0.00 0.00 37.01 2.24
844 1043 2.761208 AGAGCGTTTAGAGCACCATACT 59.239 45.455 0.00 0.00 37.01 2.12
845 1044 3.166489 AGAGCGTTTAGAGCACCATAC 57.834 47.619 0.00 0.00 37.01 2.39
846 1045 4.994907 TTAGAGCGTTTAGAGCACCATA 57.005 40.909 0.00 0.00 37.01 2.74
847 1046 3.887621 TTAGAGCGTTTAGAGCACCAT 57.112 42.857 0.00 0.00 37.01 3.55
848 1047 3.887621 ATTAGAGCGTTTAGAGCACCA 57.112 42.857 0.00 0.00 37.01 4.17
849 1048 6.702282 AGAAATATTAGAGCGTTTAGAGCACC 59.298 38.462 0.00 0.00 37.01 5.01
850 1049 7.701809 AGAAATATTAGAGCGTTTAGAGCAC 57.298 36.000 0.00 0.00 37.01 4.40
851 1050 8.718102 AAAGAAATATTAGAGCGTTTAGAGCA 57.282 30.769 0.00 0.00 37.01 4.26
858 1057 9.832445 TCCTTCATAAAGAAATATTAGAGCGTT 57.168 29.630 0.00 0.00 35.40 4.84
859 1058 9.832445 TTCCTTCATAAAGAAATATTAGAGCGT 57.168 29.630 0.00 0.00 35.40 5.07
868 1067 9.733556 TGCTTGTACTTCCTTCATAAAGAAATA 57.266 29.630 0.00 0.00 35.40 1.40
869 1068 8.635765 TGCTTGTACTTCCTTCATAAAGAAAT 57.364 30.769 0.00 0.00 35.40 2.17
870 1069 7.936847 TCTGCTTGTACTTCCTTCATAAAGAAA 59.063 33.333 0.00 0.00 35.40 2.52
871 1070 7.450074 TCTGCTTGTACTTCCTTCATAAAGAA 58.550 34.615 0.00 0.00 34.14 2.52
872 1071 7.004555 TCTGCTTGTACTTCCTTCATAAAGA 57.995 36.000 0.00 0.00 34.14 2.52
873 1072 6.876257 ACTCTGCTTGTACTTCCTTCATAAAG 59.124 38.462 0.00 0.00 0.00 1.85
874 1073 6.769512 ACTCTGCTTGTACTTCCTTCATAAA 58.230 36.000 0.00 0.00 0.00 1.40
875 1074 6.360370 ACTCTGCTTGTACTTCCTTCATAA 57.640 37.500 0.00 0.00 0.00 1.90
876 1075 6.166279 CAACTCTGCTTGTACTTCCTTCATA 58.834 40.000 0.00 0.00 0.00 2.15
877 1076 4.899352 ACTCTGCTTGTACTTCCTTCAT 57.101 40.909 0.00 0.00 0.00 2.57
878 1077 4.141711 ACAACTCTGCTTGTACTTCCTTCA 60.142 41.667 0.00 0.00 32.38 3.02
879 1078 4.381411 ACAACTCTGCTTGTACTTCCTTC 58.619 43.478 0.00 0.00 32.38 3.46
880 1079 4.423625 ACAACTCTGCTTGTACTTCCTT 57.576 40.909 0.00 0.00 32.38 3.36
881 1080 4.130118 CAACAACTCTGCTTGTACTTCCT 58.870 43.478 0.00 0.00 33.03 3.36
882 1081 4.127171 TCAACAACTCTGCTTGTACTTCC 58.873 43.478 0.00 0.00 33.03 3.46
883 1082 5.683859 CATCAACAACTCTGCTTGTACTTC 58.316 41.667 0.00 0.00 33.03 3.01
884 1083 4.023707 GCATCAACAACTCTGCTTGTACTT 60.024 41.667 0.00 0.00 33.03 2.24
885 1084 3.499918 GCATCAACAACTCTGCTTGTACT 59.500 43.478 0.00 0.00 33.03 2.73
886 1085 3.499918 AGCATCAACAACTCTGCTTGTAC 59.500 43.478 0.00 0.00 42.03 2.90
887 1086 3.743521 AGCATCAACAACTCTGCTTGTA 58.256 40.909 0.00 0.00 42.03 2.41
888 1087 2.579873 AGCATCAACAACTCTGCTTGT 58.420 42.857 0.00 0.00 42.03 3.16
919 1118 0.814457 GACTGAGACTGACATCGCCT 59.186 55.000 0.00 0.00 0.00 5.52
923 1122 2.088423 ACGGAGACTGAGACTGACATC 58.912 52.381 0.00 0.00 0.00 3.06
1320 1520 2.917227 TCGTGGCCTCACAGAGCA 60.917 61.111 3.32 0.00 43.79 4.26
1580 1780 4.202030 GGGAGTACAATAGAACGAGTGGAG 60.202 50.000 0.00 0.00 0.00 3.86
1600 1800 6.183361 GCACCTTATATTTTAGGAAGGAGGGA 60.183 42.308 6.52 0.00 40.88 4.20
1601 1801 6.004574 GCACCTTATATTTTAGGAAGGAGGG 58.995 44.000 6.52 0.00 40.88 4.30
1602 1802 6.486993 GTGCACCTTATATTTTAGGAAGGAGG 59.513 42.308 5.22 0.00 40.88 4.30
1603 1803 7.054124 TGTGCACCTTATATTTTAGGAAGGAG 58.946 38.462 15.69 0.00 40.88 3.69
1604 1804 6.964464 TGTGCACCTTATATTTTAGGAAGGA 58.036 36.000 15.69 0.00 40.88 3.36
1605 1805 7.823745 ATGTGCACCTTATATTTTAGGAAGG 57.176 36.000 15.69 0.00 43.49 3.46
1608 1808 9.914834 AGTTAATGTGCACCTTATATTTTAGGA 57.085 29.630 15.69 0.00 35.45 2.94
1635 1835 5.083533 AGTTGTGCAATGAAGACCAAAAA 57.916 34.783 0.00 0.00 0.00 1.94
1636 1836 4.734398 AGTTGTGCAATGAAGACCAAAA 57.266 36.364 0.00 0.00 0.00 2.44
1637 1837 4.159321 TGAAGTTGTGCAATGAAGACCAAA 59.841 37.500 0.00 0.00 0.00 3.28
1638 1838 3.698539 TGAAGTTGTGCAATGAAGACCAA 59.301 39.130 0.00 0.00 0.00 3.67
1639 1839 3.066621 GTGAAGTTGTGCAATGAAGACCA 59.933 43.478 0.00 0.00 0.00 4.02
1640 1840 3.316308 AGTGAAGTTGTGCAATGAAGACC 59.684 43.478 0.00 0.00 0.00 3.85
1641 1841 4.558538 AGTGAAGTTGTGCAATGAAGAC 57.441 40.909 0.00 0.00 0.00 3.01
1642 1842 5.997129 TCATAGTGAAGTTGTGCAATGAAGA 59.003 36.000 0.00 0.00 0.00 2.87
1643 1843 6.245115 TCATAGTGAAGTTGTGCAATGAAG 57.755 37.500 0.00 0.00 0.00 3.02
1644 1844 6.822667 ATCATAGTGAAGTTGTGCAATGAA 57.177 33.333 0.00 0.00 0.00 2.57
1645 1845 6.822667 AATCATAGTGAAGTTGTGCAATGA 57.177 33.333 0.00 0.00 0.00 2.57
1646 1846 7.595875 TGAAAATCATAGTGAAGTTGTGCAATG 59.404 33.333 0.00 0.00 0.00 2.82
1647 1847 7.596248 GTGAAAATCATAGTGAAGTTGTGCAAT 59.404 33.333 0.00 0.00 0.00 3.56
1648 1848 6.917477 GTGAAAATCATAGTGAAGTTGTGCAA 59.083 34.615 0.00 0.00 0.00 4.08
1649 1849 6.039159 TGTGAAAATCATAGTGAAGTTGTGCA 59.961 34.615 0.00 0.00 0.00 4.57
1650 1850 6.437928 TGTGAAAATCATAGTGAAGTTGTGC 58.562 36.000 0.00 0.00 0.00 4.57
1756 1956 8.359875 TGTACCAAAATACATGGATTGAACAT 57.640 30.769 3.26 0.00 40.56 2.71
1757 1957 7.767250 TGTACCAAAATACATGGATTGAACA 57.233 32.000 3.26 2.25 40.56 3.18
1773 1973 9.521841 TGACTTTGACCATTAATATGTACCAAA 57.478 29.630 0.00 0.00 0.00 3.28
1774 1974 9.693739 ATGACTTTGACCATTAATATGTACCAA 57.306 29.630 0.00 0.00 0.00 3.67
1775 1975 9.119418 CATGACTTTGACCATTAATATGTACCA 57.881 33.333 0.00 0.00 0.00 3.25
1776 1976 8.076178 GCATGACTTTGACCATTAATATGTACC 58.924 37.037 0.00 0.00 0.00 3.34
1777 1977 8.620416 TGCATGACTTTGACCATTAATATGTAC 58.380 33.333 0.00 0.00 0.00 2.90
1778 1978 8.744568 TGCATGACTTTGACCATTAATATGTA 57.255 30.769 0.00 0.00 0.00 2.29
1779 1979 7.643569 TGCATGACTTTGACCATTAATATGT 57.356 32.000 0.00 0.00 0.00 2.29
1780 1980 8.354426 TGATGCATGACTTTGACCATTAATATG 58.646 33.333 2.46 0.00 0.00 1.78
1781 1981 8.355169 GTGATGCATGACTTTGACCATTAATAT 58.645 33.333 9.23 0.00 0.00 1.28
1782 1982 7.338957 TGTGATGCATGACTTTGACCATTAATA 59.661 33.333 17.37 0.00 0.00 0.98
1783 1983 6.153170 TGTGATGCATGACTTTGACCATTAAT 59.847 34.615 17.37 0.00 0.00 1.40
1784 1984 5.476254 TGTGATGCATGACTTTGACCATTAA 59.524 36.000 17.37 0.00 0.00 1.40
1785 1985 5.008980 TGTGATGCATGACTTTGACCATTA 58.991 37.500 17.37 0.00 0.00 1.90
1786 1986 3.827876 TGTGATGCATGACTTTGACCATT 59.172 39.130 17.37 0.00 0.00 3.16
1787 1987 3.423749 TGTGATGCATGACTTTGACCAT 58.576 40.909 17.37 0.00 0.00 3.55
1788 1988 2.815503 CTGTGATGCATGACTTTGACCA 59.184 45.455 17.37 0.00 0.00 4.02
1789 1989 3.076621 TCTGTGATGCATGACTTTGACC 58.923 45.455 17.37 0.00 0.00 4.02
1790 1990 3.424039 CGTCTGTGATGCATGACTTTGAC 60.424 47.826 17.37 18.36 0.00 3.18
1791 1991 2.738314 CGTCTGTGATGCATGACTTTGA 59.262 45.455 17.37 9.86 0.00 2.69
1792 1992 2.159612 CCGTCTGTGATGCATGACTTTG 60.160 50.000 17.37 7.81 0.00 2.77
1793 1993 2.079158 CCGTCTGTGATGCATGACTTT 58.921 47.619 17.37 0.00 0.00 2.66
1794 1994 1.002430 ACCGTCTGTGATGCATGACTT 59.998 47.619 17.37 0.00 0.00 3.01
1795 1995 0.610174 ACCGTCTGTGATGCATGACT 59.390 50.000 17.37 0.00 0.00 3.41
1796 1996 3.143675 ACCGTCTGTGATGCATGAC 57.856 52.632 9.59 9.59 0.00 3.06
1805 2005 2.286418 GCTTGACTTTTCACCGTCTGTG 60.286 50.000 0.00 0.00 46.88 3.66
1806 2006 1.940613 GCTTGACTTTTCACCGTCTGT 59.059 47.619 0.00 0.00 0.00 3.41
1807 2007 1.939934 TGCTTGACTTTTCACCGTCTG 59.060 47.619 0.00 0.00 0.00 3.51
1808 2008 1.940613 GTGCTTGACTTTTCACCGTCT 59.059 47.619 0.00 0.00 0.00 4.18
1809 2009 1.332904 CGTGCTTGACTTTTCACCGTC 60.333 52.381 0.00 0.00 0.00 4.79
1810 2010 0.655733 CGTGCTTGACTTTTCACCGT 59.344 50.000 0.00 0.00 0.00 4.83
1811 2011 0.657368 GCGTGCTTGACTTTTCACCG 60.657 55.000 0.00 0.00 0.00 4.94
1812 2012 0.317854 GGCGTGCTTGACTTTTCACC 60.318 55.000 0.00 0.00 0.00 4.02
1813 2013 0.663153 AGGCGTGCTTGACTTTTCAC 59.337 50.000 0.00 0.00 0.00 3.18
1814 2014 1.388547 AAGGCGTGCTTGACTTTTCA 58.611 45.000 0.00 0.00 31.56 2.69
1815 2015 3.831715 ATAAGGCGTGCTTGACTTTTC 57.168 42.857 2.15 0.00 38.44 2.29
1816 2016 5.897377 AATATAAGGCGTGCTTGACTTTT 57.103 34.783 2.15 0.00 38.44 2.27
1817 2017 5.897377 AAATATAAGGCGTGCTTGACTTT 57.103 34.783 2.15 0.00 38.44 2.66
1818 2018 5.393027 CCAAAATATAAGGCGTGCTTGACTT 60.393 40.000 2.44 2.44 41.12 3.01
1819 2019 4.096382 CCAAAATATAAGGCGTGCTTGACT 59.904 41.667 0.00 0.00 0.00 3.41
1820 2020 4.095782 TCCAAAATATAAGGCGTGCTTGAC 59.904 41.667 0.00 0.00 0.00 3.18
1821 2021 4.265893 TCCAAAATATAAGGCGTGCTTGA 58.734 39.130 0.00 0.00 0.00 3.02
1822 2022 4.630894 TCCAAAATATAAGGCGTGCTTG 57.369 40.909 0.00 0.00 0.00 4.01
1823 2023 5.394115 CCTTTCCAAAATATAAGGCGTGCTT 60.394 40.000 0.00 0.00 31.59 3.91
1824 2024 4.097892 CCTTTCCAAAATATAAGGCGTGCT 59.902 41.667 0.00 0.00 31.59 4.40
1825 2025 4.097286 TCCTTTCCAAAATATAAGGCGTGC 59.903 41.667 0.00 0.00 37.62 5.34
1826 2026 5.221048 CCTCCTTTCCAAAATATAAGGCGTG 60.221 44.000 0.00 0.00 37.62 5.34
1827 2027 4.887655 CCTCCTTTCCAAAATATAAGGCGT 59.112 41.667 0.00 0.00 37.62 5.68
1828 2028 4.278419 CCCTCCTTTCCAAAATATAAGGCG 59.722 45.833 0.00 0.00 37.62 5.52
1829 2029 5.454966 TCCCTCCTTTCCAAAATATAAGGC 58.545 41.667 0.00 0.00 37.62 4.35
1830 2030 6.673583 ACTCCCTCCTTTCCAAAATATAAGG 58.326 40.000 0.00 0.00 38.78 2.69
1831 2031 9.868160 ATTACTCCCTCCTTTCCAAAATATAAG 57.132 33.333 0.00 0.00 0.00 1.73
1834 2034 9.642343 GTAATTACTCCCTCCTTTCCAAAATAT 57.358 33.333 8.41 0.00 0.00 1.28
1835 2035 8.842764 AGTAATTACTCCCTCCTTTCCAAAATA 58.157 33.333 12.50 0.00 0.00 1.40
1836 2036 7.709601 AGTAATTACTCCCTCCTTTCCAAAAT 58.290 34.615 12.50 0.00 0.00 1.82
1837 2037 7.098845 AGTAATTACTCCCTCCTTTCCAAAA 57.901 36.000 12.50 0.00 0.00 2.44
1838 2038 6.713731 AGTAATTACTCCCTCCTTTCCAAA 57.286 37.500 12.50 0.00 0.00 3.28
1839 2039 6.045106 ACAAGTAATTACTCCCTCCTTTCCAA 59.955 38.462 18.28 0.00 34.99 3.53
1840 2040 5.550403 ACAAGTAATTACTCCCTCCTTTCCA 59.450 40.000 18.28 0.00 34.99 3.53
1841 2041 6.063496 ACAAGTAATTACTCCCTCCTTTCC 57.937 41.667 18.28 0.00 34.99 3.13
1842 2042 6.948589 AGACAAGTAATTACTCCCTCCTTTC 58.051 40.000 18.28 4.94 34.99 2.62
1843 2043 6.954352 AGACAAGTAATTACTCCCTCCTTT 57.046 37.500 18.28 0.00 34.99 3.11
1844 2044 6.954352 AAGACAAGTAATTACTCCCTCCTT 57.046 37.500 18.28 13.37 34.99 3.36
1845 2045 7.420029 TCTAAGACAAGTAATTACTCCCTCCT 58.580 38.462 18.28 8.81 34.99 3.69
1846 2046 7.657023 TCTAAGACAAGTAATTACTCCCTCC 57.343 40.000 18.28 6.90 34.99 4.30
1848 2048 9.892130 CAAATCTAAGACAAGTAATTACTCCCT 57.108 33.333 18.28 12.23 34.99 4.20
1849 2049 9.668497 ACAAATCTAAGACAAGTAATTACTCCC 57.332 33.333 18.28 10.35 34.99 4.30
1889 2089 5.291128 GTCCCAAATTACACGTGTCTAGATG 59.709 44.000 27.16 17.66 0.00 2.90
1913 2113 7.922811 ACTTACGGTTAGAAATTATTACCTCCG 59.077 37.037 0.54 0.00 40.00 4.63
1933 2133 4.860352 TGTGTGATATCGTTTGGACTTACG 59.140 41.667 0.00 0.00 39.03 3.18
1941 2173 4.028750 CGTACGACTGTGTGATATCGTTTG 60.029 45.833 10.44 0.00 44.98 2.93
1945 2177 2.286025 TCCGTACGACTGTGTGATATCG 59.714 50.000 18.76 0.00 40.39 2.92
2133 2378 7.797038 AGAATGAATCGATTGATGTGAATCA 57.203 32.000 16.96 4.13 34.24 2.57
2140 2385 7.008278 CGCTAGAAAGAATGAATCGATTGATG 58.992 38.462 16.96 0.00 34.24 3.07
2141 2386 6.146837 CCGCTAGAAAGAATGAATCGATTGAT 59.853 38.462 16.96 10.24 35.98 2.57
2233 2481 1.340248 ACCAAGTGTAGGTGACGACAG 59.660 52.381 0.00 0.00 46.95 3.51
2459 2714 4.101448 GCGGGCATGTGGACTCCT 62.101 66.667 0.00 0.00 0.00 3.69
2460 2715 4.101448 AGCGGGCATGTGGACTCC 62.101 66.667 0.00 0.00 0.00 3.85
2549 2804 4.332268 GTCACCTACACTACTTAGAGACCG 59.668 50.000 0.00 0.00 0.00 4.79
2576 2831 7.885297 TGGTTATTCCAGAAGATTTCACAAAG 58.115 34.615 0.00 0.00 41.93 2.77
2701 2958 0.606604 TCTTGGTGTTAGGACTCGGC 59.393 55.000 0.00 0.00 0.00 5.54
2711 2968 3.506067 GGGATTCGAAACATCTTGGTGTT 59.494 43.478 0.00 0.00 43.78 3.32
2731 2988 6.310149 AGCCTTATCCAAGAATATGAAAGGG 58.690 40.000 0.00 0.00 34.20 3.95
2740 2997 7.231519 GCCTATGTTTAAGCCTTATCCAAGAAT 59.768 37.037 0.00 0.00 33.20 2.40
2755 3012 8.685838 ACTTGTGTTCTTTAGCCTATGTTTAA 57.314 30.769 0.00 0.00 0.00 1.52
2888 3145 6.884472 TTCTTTCTTTCTTTTCCCCCTTTT 57.116 33.333 0.00 0.00 0.00 2.27
2892 3149 6.267699 TGATCTTTCTTTCTTTCTTTTCCCCC 59.732 38.462 0.00 0.00 0.00 5.40
3010 3267 5.066375 GCACTGGGAAAATGCTTTTTCTTTT 59.934 36.000 27.26 13.32 46.52 2.27
3020 3277 1.080569 CGTGGCACTGGGAAAATGC 60.081 57.895 16.72 0.00 38.68 3.56
3061 3318 0.670546 ACATGGCTCTCGACAAACGG 60.671 55.000 0.00 0.00 42.82 4.44
3167 3424 6.046593 CGAGTGCATTTTATTGGTACTAGGA 58.953 40.000 0.00 0.00 0.00 2.94
3180 3437 4.507388 CCAAATGTTTGTCGAGTGCATTTT 59.493 37.500 11.83 0.00 37.57 1.82
3226 3483 9.847706 CTCTATAATACCATACTTGCACTACTG 57.152 37.037 0.00 0.00 0.00 2.74
3244 3501 7.639113 TTTTCGAATTTGCACCCTCTATAAT 57.361 32.000 0.00 0.00 0.00 1.28
3280 3537 5.046231 TGGCCAGTATTTGATTTTAAACCCC 60.046 40.000 0.00 0.00 0.00 4.95
3359 3616 2.357009 GCATTCACTAGGTGATGCCAAG 59.643 50.000 16.46 0.00 42.40 3.61
3361 3618 2.042686 GCATTCACTAGGTGATGCCA 57.957 50.000 16.46 0.29 42.40 4.92
3364 3621 1.212688 TGGGGCATTCACTAGGTGATG 59.787 52.381 1.10 4.17 42.40 3.07
3379 3636 3.054655 TGATGACTAAAAGGTAGTGGGGC 60.055 47.826 0.00 0.00 0.00 5.80
3418 3675 4.082125 CAACTAAGGCTTGGACCAAGATT 58.918 43.478 33.92 26.98 43.42 2.40
3838 4211 8.855110 TCTACTCTTCAGAGATTGTAATGATCC 58.145 37.037 10.93 0.00 44.74 3.36
3858 4231 8.619546 ACTCCTACGTACAATTTGTATCTACTC 58.380 37.037 12.16 0.00 35.05 2.59
3868 4241 6.594788 TCTTGGTACTCCTACGTACAATTT 57.405 37.500 0.00 0.00 41.12 1.82
3873 4246 3.379372 TGCATCTTGGTACTCCTACGTAC 59.621 47.826 0.00 0.00 39.16 3.67
3886 4259 4.386652 GCACTGTACAATTTTGCATCTTGG 59.613 41.667 11.56 0.00 33.24 3.61
3912 4285 7.290857 ACTAGTAATGTTGACAAAGCATACG 57.709 36.000 0.00 0.00 0.00 3.06
3938 4311 6.765355 TCCTCTGTACTAGGATAGATCACA 57.235 41.667 12.05 0.00 42.77 3.58
3993 4366 2.676471 GCCCCGCAGACCATTTGT 60.676 61.111 0.00 0.00 0.00 2.83
4051 4424 5.311265 TGAGATCCATCTTAACATGGCATC 58.689 41.667 4.93 8.72 42.97 3.91
4087 4460 0.323633 TGTGGCATCTGTGGGGATTG 60.324 55.000 0.00 0.00 0.00 2.67
4089 4462 1.304282 GTGTGGCATCTGTGGGGAT 59.696 57.895 0.00 0.00 0.00 3.85
4090 4463 2.756400 GTGTGGCATCTGTGGGGA 59.244 61.111 0.00 0.00 0.00 4.81
4091 4464 2.361610 GGTGTGGCATCTGTGGGG 60.362 66.667 0.00 0.00 0.00 4.96
4092 4465 1.973281 GTGGTGTGGCATCTGTGGG 60.973 63.158 0.00 0.00 0.00 4.61
4093 4466 1.973281 GGTGGTGTGGCATCTGTGG 60.973 63.158 0.00 0.00 0.00 4.17
4094 4467 0.957395 GAGGTGGTGTGGCATCTGTG 60.957 60.000 0.00 0.00 0.00 3.66
4095 4468 1.130054 AGAGGTGGTGTGGCATCTGT 61.130 55.000 0.00 0.00 0.00 3.41
4096 4469 0.675837 CAGAGGTGGTGTGGCATCTG 60.676 60.000 0.00 0.00 0.00 2.90
4097 4470 1.681666 CAGAGGTGGTGTGGCATCT 59.318 57.895 0.00 0.00 0.00 2.90
4098 4471 1.377725 CCAGAGGTGGTGTGGCATC 60.378 63.158 0.00 0.00 39.30 3.91
4099 4472 2.759114 CCAGAGGTGGTGTGGCAT 59.241 61.111 0.00 0.00 39.30 4.40
4109 4482 1.051812 CCTTCTCACACACCAGAGGT 58.948 55.000 0.00 0.00 35.62 3.85
4110 4483 1.001406 GTCCTTCTCACACACCAGAGG 59.999 57.143 0.00 0.00 32.76 3.69
4111 4484 1.688735 TGTCCTTCTCACACACCAGAG 59.311 52.381 0.00 0.00 0.00 3.35
4112 4485 1.788229 TGTCCTTCTCACACACCAGA 58.212 50.000 0.00 0.00 0.00 3.86
4113 4486 2.847327 ATGTCCTTCTCACACACCAG 57.153 50.000 0.00 0.00 0.00 4.00
4114 4487 3.213506 CAAATGTCCTTCTCACACACCA 58.786 45.455 0.00 0.00 0.00 4.17
4115 4488 2.030805 GCAAATGTCCTTCTCACACACC 60.031 50.000 0.00 0.00 0.00 4.16
4116 4489 2.618241 TGCAAATGTCCTTCTCACACAC 59.382 45.455 0.00 0.00 0.00 3.82
4117 4490 2.880268 CTGCAAATGTCCTTCTCACACA 59.120 45.455 0.00 0.00 0.00 3.72
4141 4514 0.176449 GCACCCCTGGATTGATTTGC 59.824 55.000 0.00 0.00 0.00 3.68
4186 4559 5.286267 ACTCGAACTAAAGAGGGACAAAA 57.714 39.130 0.00 0.00 38.72 2.44
4237 4610 4.043310 TCTCCTCAACTCAACCAAATGGAT 59.957 41.667 6.42 0.00 38.94 3.41
4238 4611 3.394274 TCTCCTCAACTCAACCAAATGGA 59.606 43.478 6.42 0.00 38.94 3.41
4240 4613 4.645535 TCTCTCCTCAACTCAACCAAATG 58.354 43.478 0.00 0.00 0.00 2.32
4251 4624 6.547930 AAGTACCCTTTATCTCTCCTCAAC 57.452 41.667 0.00 0.00 0.00 3.18
4256 4629 4.278919 CCTCGAAGTACCCTTTATCTCTCC 59.721 50.000 0.00 0.00 0.00 3.71
4275 4648 4.384056 AGGATGCAAGATTGTAATCCTCG 58.616 43.478 18.58 0.00 43.90 4.63
4288 4661 7.333921 GGATTGTCATAGAGATAAGGATGCAAG 59.666 40.741 0.00 0.00 30.48 4.01
4310 4683 1.139058 CGCAACTAGCTAGTGGGGATT 59.861 52.381 31.96 12.80 41.31 3.01
4315 4688 1.202582 ACAGACGCAACTAGCTAGTGG 59.797 52.381 26.70 24.33 42.61 4.00
4416 5159 8.689972 CCATATCTTATGCCTCAAAGTTCTTTT 58.310 33.333 0.00 0.00 0.00 2.27
4423 5166 6.543465 TGACAACCATATCTTATGCCTCAAAG 59.457 38.462 0.00 0.00 0.00 2.77
4432 5175 9.547753 GATACAAGTGTGACAACCATATCTTAT 57.452 33.333 0.00 0.00 0.00 1.73
4543 5287 6.017192 ACTCAAGACTCTTAATGTAGACCCA 58.983 40.000 0.00 0.00 0.00 4.51
4575 5373 8.740369 CACATCAGATGAATAAAAAGCGAATTC 58.260 33.333 17.81 0.00 0.00 2.17
4577 5375 7.699391 CACACATCAGATGAATAAAAAGCGAAT 59.301 33.333 17.81 0.00 0.00 3.34
4578 5376 7.022979 CACACATCAGATGAATAAAAAGCGAA 58.977 34.615 17.81 0.00 0.00 4.70
4580 5378 6.249893 CACACACATCAGATGAATAAAAAGCG 59.750 38.462 17.81 0.00 0.00 4.68
4587 5385 5.409214 CACACACACACACATCAGATGAATA 59.591 40.000 17.81 0.00 0.00 1.75
4628 5426 6.459066 CATGTGTACAGGTCATTAGATAGGG 58.541 44.000 0.00 0.00 0.00 3.53
4667 5465 0.319297 GTAACCGTCCGTGAAGCAGT 60.319 55.000 0.00 0.00 0.00 4.40
4735 5533 4.143333 CGTTGGGAGGTCGCGGAT 62.143 66.667 6.13 0.00 0.00 4.18
4760 5558 0.320374 ATCATTGGTGTCGGTCGTGT 59.680 50.000 0.00 0.00 0.00 4.49
4933 5731 0.105039 GATGGAAGGTAGGACGGCAG 59.895 60.000 0.00 0.00 0.00 4.85
4966 5764 4.458989 GCATACATTGTCCTCTTTCCACAA 59.541 41.667 0.00 0.00 34.61 3.33
5010 5808 2.607750 ACCACAGAGCCATCCGGT 60.608 61.111 0.00 0.00 33.28 5.28
5280 6078 3.827898 GCGCGTAGGCTCTCCAGT 61.828 66.667 8.43 0.00 36.88 4.00
5337 6135 0.033504 CGTACCTGCAGTTGGTCACT 59.966 55.000 13.81 0.00 38.88 3.41
5504 6302 2.358125 CGTGCGATGAACCACCCA 60.358 61.111 0.00 0.00 0.00 4.51
5514 6312 3.064987 CTCGAGGTTCCCGTGCGAT 62.065 63.158 3.91 0.00 0.00 4.58
5637 6437 9.995003 TCATACATAGAACATACAATGTGCATA 57.005 29.630 0.00 0.00 44.07 3.14
5704 6504 6.435164 ACCAGCAGTAATTAATTTCCCATCT 58.565 36.000 5.91 0.00 0.00 2.90
5721 6521 6.265422 TCGTATATATCATATGGGACCAGCAG 59.735 42.308 2.13 0.00 0.00 4.24
5727 6527 9.179909 CTATCCCTCGTATATATCATATGGGAC 57.820 40.741 2.13 0.00 43.03 4.46
5751 6705 5.876460 TCTATGCAACTACACTGTACGTCTA 59.124 40.000 0.00 0.00 0.00 2.59
5773 6727 4.021192 ACAATCAAAATGCAAACCCGATCT 60.021 37.500 0.00 0.00 0.00 2.75
5826 6780 8.227791 CACTACACTATACGACAAAGCAAAAAT 58.772 33.333 0.00 0.00 0.00 1.82
5843 6797 9.781834 CAAAAACAAAAGAATGACACTACACTA 57.218 29.630 0.00 0.00 0.00 2.74
5887 6841 5.633601 TGCAGAGAAAACATACGACAACTAG 59.366 40.000 0.00 0.00 0.00 2.57
5892 6846 5.940192 ATTTGCAGAGAAAACATACGACA 57.060 34.783 0.00 0.00 0.00 4.35
5936 6894 7.180051 CCCATCCTATTCTATCTATCCTATGCC 59.820 44.444 0.00 0.00 0.00 4.40
5973 6937 1.448893 GGTTGCGATAACAGCCCGA 60.449 57.895 5.53 0.00 35.05 5.14
6078 7042 3.250617 TGGAGGGCATCTATCTGCATAA 58.749 45.455 0.00 0.00 44.12 1.90
6091 7055 1.544724 GTTAACATTGCTGGAGGGCA 58.455 50.000 0.00 0.00 40.74 5.36
6126 7092 3.631250 TGGGAATTCATAAGTTGAGGGC 58.369 45.455 7.93 0.00 35.27 5.19
6174 7140 5.941948 ACTATTAAGAAGGTGTTGTGTGC 57.058 39.130 0.00 0.00 0.00 4.57
6288 7254 4.157656 TGATAGTTTTTGGGGATTTGCTCG 59.842 41.667 0.00 0.00 0.00 5.03
6300 7266 6.029346 AGGCCAGAATTGTGATAGTTTTTG 57.971 37.500 5.01 0.00 0.00 2.44
6309 7275 4.262549 CCAAAAATGAGGCCAGAATTGTGA 60.263 41.667 5.01 0.00 0.00 3.58
6312 7278 4.540359 TCCAAAAATGAGGCCAGAATTG 57.460 40.909 5.01 2.17 0.00 2.32
6358 7324 3.134442 TGCCAGCAATCTTTTGGAAAACT 59.866 39.130 0.00 0.00 33.76 2.66
6359 7325 3.465871 TGCCAGCAATCTTTTGGAAAAC 58.534 40.909 0.00 0.00 33.76 2.43
6364 7330 4.460948 ACTAATGCCAGCAATCTTTTGG 57.539 40.909 0.00 0.00 33.22 3.28
6398 7365 4.826733 TGCATGTTGGAGTGATTAGTGTTT 59.173 37.500 0.00 0.00 0.00 2.83
6498 7465 1.737793 CCTAAGCCTGCCTAACGTTTG 59.262 52.381 5.91 3.98 0.00 2.93
6501 7468 0.616679 TCCCTAAGCCTGCCTAACGT 60.617 55.000 0.00 0.00 0.00 3.99
6613 7580 3.716006 CGAGTTGCAGCCGTGTGG 61.716 66.667 0.00 0.00 38.77 4.17
6619 7586 0.671781 AGATGTCACGAGTTGCAGCC 60.672 55.000 0.00 0.00 0.00 4.85
6650 7617 1.272490 CAACCTTGTCTCTGCTACCGA 59.728 52.381 0.00 0.00 0.00 4.69
6652 7619 2.417719 CACAACCTTGTCTCTGCTACC 58.582 52.381 0.00 0.00 39.91 3.18
6654 7621 1.270839 GCCACAACCTTGTCTCTGCTA 60.271 52.381 0.00 0.00 39.91 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.