Multiple sequence alignment - TraesCS4D01G359300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G359300 chr4D 100.000 2597 0 0 1 2597 506745707 506748303 0.000000e+00 4796.0
1 TraesCS4D01G359300 chr4D 98.776 245 3 0 181 425 506741372 506741616 1.100000e-118 436.0
2 TraesCS4D01G359300 chr4D 85.938 64 4 4 2376 2437 12693139 12693079 2.160000e-06 63.9
3 TraesCS4D01G359300 chr4B 93.787 1352 75 1 545 1887 664393818 664392467 0.000000e+00 2023.0
4 TraesCS4D01G359300 chr4B 88.820 161 16 2 2436 2595 664392470 664392311 2.040000e-46 196.0
5 TraesCS4D01G359300 chr5A 93.699 1222 68 2 610 1822 702996763 702997984 0.000000e+00 1821.0
6 TraesCS4D01G359300 chr5A 85.017 574 60 17 1882 2439 40615747 40616310 6.280000e-156 560.0
7 TraesCS4D01G359300 chr5A 83.944 573 64 23 1882 2437 40616308 40616869 8.230000e-145 523.0
8 TraesCS4D01G359300 chr5A 87.365 277 26 1 1617 1884 702998357 702998633 2.510000e-80 309.0
9 TraesCS4D01G359300 chr5A 87.654 162 17 3 2436 2595 702998672 702998832 4.410000e-43 185.0
10 TraesCS4D01G359300 chr5A 89.655 58 5 1 494 551 702996673 702996729 3.580000e-09 73.1
11 TraesCS4D01G359300 chr3B 96.266 1098 40 1 507 1603 800222445 800223542 0.000000e+00 1799.0
12 TraesCS4D01G359300 chr3B 85.794 535 73 2 926 1460 800606242 800606773 4.850000e-157 564.0
13 TraesCS4D01G359300 chr3B 85.681 433 52 2 1462 1884 800615441 800615873 5.100000e-122 448.0
14 TraesCS4D01G359300 chr3B 83.871 372 32 11 2237 2595 800223884 800224240 1.930000e-86 329.0
15 TraesCS4D01G359300 chr3B 87.956 274 23 5 1695 1959 800223583 800223855 5.390000e-82 315.0
16 TraesCS4D01G359300 chr3B 87.578 161 18 2 2436 2595 800615873 800616032 4.410000e-43 185.0
17 TraesCS4D01G359300 chr5D 96.471 425 15 0 1 425 130304067 130304491 0.000000e+00 702.0
18 TraesCS4D01G359300 chr5D 95.902 244 10 0 182 425 130294957 130295200 1.870000e-106 396.0
19 TraesCS4D01G359300 chr5D 82.305 243 22 12 2215 2444 434932525 434932291 9.490000e-45 191.0
20 TraesCS4D01G359300 chr5D 85.484 62 2 6 2378 2436 412211568 412211511 1.000000e-04 58.4
21 TraesCS4D01G359300 chr2D 95.035 423 20 1 3 425 518075736 518075315 0.000000e+00 664.0
22 TraesCS4D01G359300 chr2D 84.722 576 64 15 1883 2437 325807891 325807319 2.920000e-154 555.0
23 TraesCS4D01G359300 chr2D 86.374 455 51 7 1940 2390 372172321 372171874 1.080000e-133 486.0
24 TraesCS4D01G359300 chr2D 93.333 195 13 0 231 425 518146071 518145877 3.270000e-74 289.0
25 TraesCS4D01G359300 chr2B 85.192 574 63 11 1883 2437 697672044 697672614 1.040000e-158 569.0
26 TraesCS4D01G359300 chr2B 89.370 254 19 7 178 425 749287450 749287199 1.940000e-81 313.0
27 TraesCS4D01G359300 chr2B 82.201 309 30 8 2161 2449 754669493 754669796 2.580000e-60 243.0
28 TraesCS4D01G359300 chr4A 85.742 519 61 11 1884 2395 136760918 136760406 1.060000e-148 536.0
29 TraesCS4D01G359300 chr4A 80.282 426 61 18 1 416 369004528 369004116 1.510000e-77 300.0
30 TraesCS4D01G359300 chr4A 86.159 289 23 5 2161 2438 124223543 124223825 1.950000e-76 296.0
31 TraesCS4D01G359300 chr7B 89.302 430 33 11 1 421 481850910 481851335 6.370000e-146 527.0
32 TraesCS4D01G359300 chr7B 87.692 65 1 6 2376 2437 742183339 742183399 4.640000e-08 69.4
33 TraesCS4D01G359300 chr6B 88.941 425 33 10 3 425 593716590 593716178 1.780000e-141 512.0
34 TraesCS4D01G359300 chr6D 86.551 461 50 6 1940 2394 108812560 108813014 4.990000e-137 497.0
35 TraesCS4D01G359300 chr6D 83.685 521 63 18 1932 2436 26356938 26357452 3.030000e-129 472.0
36 TraesCS4D01G359300 chr6D 92.453 53 4 0 426 478 367156756 367156704 2.770000e-10 76.8
37 TraesCS4D01G359300 chr5B 86.927 436 39 14 1 425 598157570 598157142 8.410000e-130 473.0
38 TraesCS4D01G359300 chr5B 86.364 220 21 9 213 425 598162363 598162146 5.590000e-57 231.0
39 TraesCS4D01G359300 chr2A 86.270 437 41 15 1 425 713460974 713461403 8.470000e-125 457.0
40 TraesCS4D01G359300 chr2A 85.294 68 9 1 2371 2438 281661010 281661076 4.640000e-08 69.4
41 TraesCS4D01G359300 chr2A 83.784 74 8 4 2364 2437 654449565 654449634 1.670000e-07 67.6
42 TraesCS4D01G359300 chr1D 86.207 435 43 13 1 425 477492134 477491707 3.050000e-124 455.0
43 TraesCS4D01G359300 chr1D 85.388 219 20 11 213 425 477496909 477496697 1.570000e-52 217.0
44 TraesCS4D01G359300 chr1B 82.600 523 74 10 1881 2395 134579610 134580123 1.830000e-121 446.0
45 TraesCS4D01G359300 chr7D 86.517 356 37 9 1 349 578713825 578714176 5.240000e-102 381.0
46 TraesCS4D01G359300 chr3D 83.590 195 17 5 2265 2447 552786437 552786628 4.440000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G359300 chr4D 506745707 506748303 2596 False 4796.000000 4796 100.000000 1 2597 1 chr4D.!!$F2 2596
1 TraesCS4D01G359300 chr4B 664392311 664393818 1507 True 1109.500000 2023 91.303500 545 2595 2 chr4B.!!$R1 2050
2 TraesCS4D01G359300 chr5A 702996673 702998832 2159 False 597.025000 1821 89.593250 494 2595 4 chr5A.!!$F2 2101
3 TraesCS4D01G359300 chr5A 40615747 40616869 1122 False 541.500000 560 84.480500 1882 2439 2 chr5A.!!$F1 557
4 TraesCS4D01G359300 chr3B 800222445 800224240 1795 False 814.333333 1799 89.364333 507 2595 3 chr3B.!!$F2 2088
5 TraesCS4D01G359300 chr3B 800606242 800606773 531 False 564.000000 564 85.794000 926 1460 1 chr3B.!!$F1 534
6 TraesCS4D01G359300 chr3B 800615441 800616032 591 False 316.500000 448 86.629500 1462 2595 2 chr3B.!!$F3 1133
7 TraesCS4D01G359300 chr2D 325807319 325807891 572 True 555.000000 555 84.722000 1883 2437 1 chr2D.!!$R1 554
8 TraesCS4D01G359300 chr2B 697672044 697672614 570 False 569.000000 569 85.192000 1883 2437 1 chr2B.!!$F1 554
9 TraesCS4D01G359300 chr4A 136760406 136760918 512 True 536.000000 536 85.742000 1884 2395 1 chr4A.!!$R1 511
10 TraesCS4D01G359300 chr6D 26356938 26357452 514 False 472.000000 472 83.685000 1932 2436 1 chr6D.!!$F1 504
11 TraesCS4D01G359300 chr1B 134579610 134580123 513 False 446.000000 446 82.600000 1881 2395 1 chr1B.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.03601 AGGATCAACTTGCAGACGGG 60.036 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 3008 0.631753 TCACCACCCCTTTGTCCAAA 59.368 50.0 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.883731 CCAAACATATCGAAATAGACTTTCACT 58.116 33.333 0.00 0.00 0.00 3.41
30 31 9.436957 ACATATCGAAATAGACTTTCACTTTGT 57.563 29.630 0.00 0.00 0.00 2.83
31 32 9.907576 CATATCGAAATAGACTTTCACTTTGTC 57.092 33.333 0.00 0.00 0.00 3.18
33 34 7.408132 TCGAAATAGACTTTCACTTTGTCAG 57.592 36.000 0.00 0.00 33.56 3.51
35 36 7.382488 TCGAAATAGACTTTCACTTTGTCAGAG 59.618 37.037 0.00 0.00 33.56 3.35
45 46 4.572389 TCACTTTGTCAGAGAAAGAGTTGC 59.428 41.667 23.45 0.00 34.94 4.17
46 47 4.333649 CACTTTGTCAGAGAAAGAGTTGCA 59.666 41.667 23.45 0.00 34.94 4.08
47 48 4.943705 ACTTTGTCAGAGAAAGAGTTGCAA 59.056 37.500 23.45 0.00 34.94 4.08
48 49 5.415701 ACTTTGTCAGAGAAAGAGTTGCAAA 59.584 36.000 23.45 1.95 34.94 3.68
49 50 6.623767 ACTTTGTCAGAGAAAGAGTTGCAAAC 60.624 38.462 23.45 0.00 39.18 2.93
50 51 8.916757 ACTTTGTCAGAGAAAGAGTTGCAAACA 61.917 37.037 23.45 0.00 40.25 2.83
65 66 5.643379 TGCAAACAAATAGTTGGAGATCC 57.357 39.130 7.93 0.00 41.19 3.36
66 67 4.155826 TGCAAACAAATAGTTGGAGATCCG 59.844 41.667 7.93 0.00 41.19 4.18
67 68 4.438744 GCAAACAAATAGTTGGAGATCCGG 60.439 45.833 7.93 0.00 41.19 5.14
68 69 4.569719 AACAAATAGTTGGAGATCCGGT 57.430 40.909 7.93 0.00 39.49 5.28
69 70 4.569719 ACAAATAGTTGGAGATCCGGTT 57.430 40.909 7.93 0.00 39.22 4.44
70 71 4.514401 ACAAATAGTTGGAGATCCGGTTC 58.486 43.478 7.93 1.92 39.22 3.62
72 73 5.126067 CAAATAGTTGGAGATCCGGTTCAT 58.874 41.667 14.83 0.00 39.43 2.57
74 75 3.268023 AGTTGGAGATCCGGTTCATTC 57.732 47.619 14.83 4.47 39.43 2.67
75 76 2.092914 AGTTGGAGATCCGGTTCATTCC 60.093 50.000 14.83 13.25 39.43 3.01
76 77 1.578897 TGGAGATCCGGTTCATTCCA 58.421 50.000 15.98 15.98 39.43 3.53
77 78 2.126882 TGGAGATCCGGTTCATTCCAT 58.873 47.619 15.98 0.00 39.43 3.41
79 80 2.551071 GGAGATCCGGTTCATTCCATCC 60.551 54.545 14.83 7.72 0.00 3.51
81 82 2.509548 AGATCCGGTTCATTCCATCCAA 59.490 45.455 14.83 0.00 0.00 3.53
82 83 2.418368 TCCGGTTCATTCCATCCAAG 57.582 50.000 0.00 0.00 0.00 3.61
84 85 1.064758 CCGGTTCATTCCATCCAAGGA 60.065 52.381 0.00 0.00 35.41 3.36
85 86 2.423373 CCGGTTCATTCCATCCAAGGAT 60.423 50.000 0.00 0.00 37.56 3.24
86 87 2.880890 CGGTTCATTCCATCCAAGGATC 59.119 50.000 0.00 0.00 37.56 3.36
89 90 4.098501 GGTTCATTCCATCCAAGGATCAAC 59.901 45.833 0.00 0.00 37.56 3.18
91 92 5.197224 TCATTCCATCCAAGGATCAACTT 57.803 39.130 0.00 0.00 37.56 2.66
92 93 4.951715 TCATTCCATCCAAGGATCAACTTG 59.048 41.667 0.00 5.08 45.71 3.16
93 94 2.726821 TCCATCCAAGGATCAACTTGC 58.273 47.619 0.00 0.00 44.98 4.01
94 95 2.041485 TCCATCCAAGGATCAACTTGCA 59.959 45.455 0.00 0.00 44.98 4.08
96 97 3.349927 CATCCAAGGATCAACTTGCAGA 58.650 45.455 0.00 1.33 44.98 4.26
97 98 2.783135 TCCAAGGATCAACTTGCAGAC 58.217 47.619 6.27 0.00 44.98 3.51
98 99 1.466167 CCAAGGATCAACTTGCAGACG 59.534 52.381 6.27 0.00 44.98 4.18
99 100 1.466167 CAAGGATCAACTTGCAGACGG 59.534 52.381 0.00 0.00 41.09 4.79
100 101 0.036010 AGGATCAACTTGCAGACGGG 60.036 55.000 0.00 0.00 0.00 5.28
101 102 0.321653 GGATCAACTTGCAGACGGGT 60.322 55.000 0.00 0.00 0.00 5.28
102 103 1.523758 GATCAACTTGCAGACGGGTT 58.476 50.000 0.00 0.00 0.00 4.11
103 104 1.464997 GATCAACTTGCAGACGGGTTC 59.535 52.381 0.00 0.00 0.00 3.62
104 105 0.179234 TCAACTTGCAGACGGGTTCA 59.821 50.000 0.00 0.00 0.00 3.18
105 106 0.307760 CAACTTGCAGACGGGTTCAC 59.692 55.000 0.00 0.00 0.00 3.18
106 107 0.107410 AACTTGCAGACGGGTTCACA 60.107 50.000 0.00 0.00 0.00 3.58
107 108 0.107410 ACTTGCAGACGGGTTCACAA 60.107 50.000 0.00 0.00 0.00 3.33
108 109 1.021202 CTTGCAGACGGGTTCACAAA 58.979 50.000 0.00 0.00 0.00 2.83
110 111 0.817634 TGCAGACGGGTTCACAAAGG 60.818 55.000 0.00 0.00 0.00 3.11
112 113 0.817634 CAGACGGGTTCACAAAGGCA 60.818 55.000 0.00 0.00 0.00 4.75
113 114 0.818040 AGACGGGTTCACAAAGGCAC 60.818 55.000 0.00 0.00 0.00 5.01
116 117 0.872388 CGGGTTCACAAAGGCACTAC 59.128 55.000 0.00 0.00 38.49 2.73
117 118 1.244816 GGGTTCACAAAGGCACTACC 58.755 55.000 0.00 0.00 38.49 3.18
118 119 1.477923 GGGTTCACAAAGGCACTACCA 60.478 52.381 0.00 0.00 43.14 3.25
119 120 2.303175 GGTTCACAAAGGCACTACCAA 58.697 47.619 0.00 0.00 43.14 3.67
120 121 2.034179 GGTTCACAAAGGCACTACCAAC 59.966 50.000 0.00 0.00 43.14 3.77
122 123 1.213182 TCACAAAGGCACTACCAACCA 59.787 47.619 0.00 0.00 43.14 3.67
123 124 1.608590 CACAAAGGCACTACCAACCAG 59.391 52.381 0.00 0.00 43.14 4.00
124 125 1.493022 ACAAAGGCACTACCAACCAGA 59.507 47.619 0.00 0.00 43.14 3.86
126 127 2.554032 CAAAGGCACTACCAACCAGAAG 59.446 50.000 0.00 0.00 43.14 2.85
127 128 0.036875 AGGCACTACCAACCAGAAGC 59.963 55.000 0.00 0.00 43.14 3.86
131 132 2.030805 GCACTACCAACCAGAAGCTTTG 60.031 50.000 0.00 0.90 0.00 2.77
132 133 3.476552 CACTACCAACCAGAAGCTTTGA 58.523 45.455 0.00 0.00 0.00 2.69
134 135 4.023707 CACTACCAACCAGAAGCTTTGAAG 60.024 45.833 0.00 0.00 0.00 3.02
135 136 3.297134 ACCAACCAGAAGCTTTGAAGA 57.703 42.857 0.00 0.00 0.00 2.87
137 138 4.218312 ACCAACCAGAAGCTTTGAAGAAT 58.782 39.130 0.00 0.00 0.00 2.40
138 139 4.651045 ACCAACCAGAAGCTTTGAAGAATT 59.349 37.500 0.00 0.00 0.00 2.17
139 140 5.129320 ACCAACCAGAAGCTTTGAAGAATTT 59.871 36.000 0.00 0.00 0.00 1.82
140 141 5.693555 CCAACCAGAAGCTTTGAAGAATTTC 59.306 40.000 0.00 0.00 0.00 2.17
141 142 5.113502 ACCAGAAGCTTTGAAGAATTTCG 57.886 39.130 0.00 0.00 36.04 3.46
143 144 5.149977 CCAGAAGCTTTGAAGAATTTCGTC 58.850 41.667 0.00 5.51 36.04 4.20
145 146 4.511826 AGAAGCTTTGAAGAATTTCGTCGT 59.488 37.500 0.00 0.00 36.04 4.34
146 147 5.694910 AGAAGCTTTGAAGAATTTCGTCGTA 59.305 36.000 0.00 0.00 36.04 3.43
148 149 6.481954 AGCTTTGAAGAATTTCGTCGTAAT 57.518 33.333 7.65 0.00 36.04 1.89
149 150 6.534934 AGCTTTGAAGAATTTCGTCGTAATC 58.465 36.000 7.65 1.98 36.04 1.75
154 155 9.801714 TTTGAAGAATTTCGTCGTAATCTAAAC 57.198 29.630 7.65 0.00 36.04 2.01
155 156 7.956558 TGAAGAATTTCGTCGTAATCTAAACC 58.043 34.615 7.65 0.00 36.04 3.27
156 157 7.816031 TGAAGAATTTCGTCGTAATCTAAACCT 59.184 33.333 7.65 0.00 36.04 3.50
158 159 8.853469 AGAATTTCGTCGTAATCTAAACCTAG 57.147 34.615 0.00 0.00 0.00 3.02
159 160 8.465201 AGAATTTCGTCGTAATCTAAACCTAGT 58.535 33.333 0.00 0.00 0.00 2.57
161 162 8.626093 ATTTCGTCGTAATCTAAACCTAGTTC 57.374 34.615 0.00 0.00 0.00 3.01
163 164 4.966366 CGTCGTAATCTAAACCTAGTTCGG 59.034 45.833 0.00 0.00 0.00 4.30
164 165 5.447818 CGTCGTAATCTAAACCTAGTTCGGT 60.448 44.000 0.00 0.00 39.48 4.69
175 176 6.753107 AACCTAGTTCGGTTTTGATTATGG 57.247 37.500 0.00 0.00 44.65 2.74
178 179 3.361786 AGTTCGGTTTTGATTATGGGGG 58.638 45.455 0.00 0.00 0.00 5.40
180 181 3.290948 TCGGTTTTGATTATGGGGGAG 57.709 47.619 0.00 0.00 0.00 4.30
181 182 2.578940 TCGGTTTTGATTATGGGGGAGT 59.421 45.455 0.00 0.00 0.00 3.85
182 183 2.687935 CGGTTTTGATTATGGGGGAGTG 59.312 50.000 0.00 0.00 0.00 3.51
183 184 3.708451 GGTTTTGATTATGGGGGAGTGT 58.292 45.455 0.00 0.00 0.00 3.55
184 185 4.093743 GGTTTTGATTATGGGGGAGTGTT 58.906 43.478 0.00 0.00 0.00 3.32
186 187 5.717654 GGTTTTGATTATGGGGGAGTGTTAA 59.282 40.000 0.00 0.00 0.00 2.01
187 188 6.211785 GGTTTTGATTATGGGGGAGTGTTAAA 59.788 38.462 0.00 0.00 0.00 1.52
188 189 6.844097 TTTGATTATGGGGGAGTGTTAAAC 57.156 37.500 0.00 0.00 0.00 2.01
190 191 6.086011 TGATTATGGGGGAGTGTTAAACAT 57.914 37.500 0.00 0.00 0.00 2.71
191 192 6.126409 TGATTATGGGGGAGTGTTAAACATC 58.874 40.000 0.00 0.00 0.00 3.06
192 193 5.522315 TTATGGGGGAGTGTTAAACATCA 57.478 39.130 0.00 0.00 0.00 3.07
193 194 4.608170 ATGGGGGAGTGTTAAACATCAT 57.392 40.909 0.00 0.00 0.00 2.45
197 198 5.890985 TGGGGGAGTGTTAAACATCATATTG 59.109 40.000 0.00 0.00 0.00 1.90
198 199 5.891551 GGGGGAGTGTTAAACATCATATTGT 59.108 40.000 0.00 0.00 0.00 2.71
199 200 6.039382 GGGGGAGTGTTAAACATCATATTGTC 59.961 42.308 0.00 0.00 0.00 3.18
200 201 6.601613 GGGGAGTGTTAAACATCATATTGTCA 59.398 38.462 0.00 0.00 0.00 3.58
201 202 7.415206 GGGGAGTGTTAAACATCATATTGTCAC 60.415 40.741 0.00 0.00 0.00 3.67
202 203 7.180079 GGAGTGTTAAACATCATATTGTCACG 58.820 38.462 0.00 0.00 0.00 4.35
203 204 7.064134 GGAGTGTTAAACATCATATTGTCACGA 59.936 37.037 0.00 0.00 0.00 4.35
204 205 7.739295 AGTGTTAAACATCATATTGTCACGAC 58.261 34.615 0.00 0.00 0.00 4.34
205 206 7.386573 AGTGTTAAACATCATATTGTCACGACA 59.613 33.333 0.00 0.00 39.98 4.35
206 207 7.477422 GTGTTAAACATCATATTGTCACGACAC 59.523 37.037 0.00 0.00 41.67 3.67
207 208 5.545658 AAACATCATATTGTCACGACACC 57.454 39.130 0.00 0.00 41.67 4.16
209 210 4.574892 ACATCATATTGTCACGACACCAA 58.425 39.130 0.00 0.00 41.67 3.67
210 211 5.185454 ACATCATATTGTCACGACACCAAT 58.815 37.500 0.00 0.00 41.67 3.16
212 213 4.574892 TCATATTGTCACGACACCAATGT 58.425 39.130 0.00 0.00 41.67 2.71
216 217 2.073056 TGTCACGACACCAATGTATGC 58.927 47.619 0.00 0.00 39.95 3.14
217 218 1.060553 GTCACGACACCAATGTATGCG 59.939 52.381 0.00 0.00 39.95 4.73
218 219 1.075542 CACGACACCAATGTATGCGT 58.924 50.000 0.00 0.00 39.95 5.24
219 220 1.463056 CACGACACCAATGTATGCGTT 59.537 47.619 0.00 0.00 39.95 4.84
239 240 9.929180 ATGCGTTACATATCTTGTATATCAAGT 57.071 29.630 11.96 5.63 44.29 3.16
258 259 8.943594 ATCAAGTTAGGTAGTTAGGGATAGAG 57.056 38.462 0.00 0.00 0.00 2.43
259 260 6.776603 TCAAGTTAGGTAGTTAGGGATAGAGC 59.223 42.308 0.00 0.00 0.00 4.09
260 261 6.533639 AGTTAGGTAGTTAGGGATAGAGCT 57.466 41.667 0.00 0.00 0.00 4.09
262 263 7.692172 AGTTAGGTAGTTAGGGATAGAGCTAG 58.308 42.308 0.00 0.00 0.00 3.42
264 265 6.533639 AGGTAGTTAGGGATAGAGCTAGTT 57.466 41.667 0.00 0.00 0.00 2.24
266 267 6.778559 AGGTAGTTAGGGATAGAGCTAGTTTG 59.221 42.308 0.00 0.00 0.00 2.93
269 270 9.129532 GTAGTTAGGGATAGAGCTAGTTTGTTA 57.870 37.037 0.00 0.00 0.00 2.41
270 271 8.785184 AGTTAGGGATAGAGCTAGTTTGTTAT 57.215 34.615 0.00 0.00 0.00 1.89
271 272 9.214962 AGTTAGGGATAGAGCTAGTTTGTTATT 57.785 33.333 0.00 0.00 0.00 1.40
275 276 9.833917 AGGGATAGAGCTAGTTTGTTATTTAAC 57.166 33.333 0.00 0.00 36.74 2.01
276 277 9.833917 GGGATAGAGCTAGTTTGTTATTTAACT 57.166 33.333 0.00 0.00 38.16 2.24
298 299 7.849322 ACTTTTCTATCTCTTCTCCCTATCC 57.151 40.000 0.00 0.00 0.00 2.59
299 300 6.785466 ACTTTTCTATCTCTTCTCCCTATCCC 59.215 42.308 0.00 0.00 0.00 3.85
300 301 4.577988 TCTATCTCTTCTCCCTATCCCG 57.422 50.000 0.00 0.00 0.00 5.14
301 302 1.931635 ATCTCTTCTCCCTATCCCGC 58.068 55.000 0.00 0.00 0.00 6.13
302 303 0.556258 TCTCTTCTCCCTATCCCGCA 59.444 55.000 0.00 0.00 0.00 5.69
303 304 1.148027 TCTCTTCTCCCTATCCCGCAT 59.852 52.381 0.00 0.00 0.00 4.73
304 305 1.274728 CTCTTCTCCCTATCCCGCATG 59.725 57.143 0.00 0.00 0.00 4.06
305 306 1.051812 CTTCTCCCTATCCCGCATGT 58.948 55.000 0.00 0.00 0.00 3.21
306 307 2.158370 TCTTCTCCCTATCCCGCATGTA 60.158 50.000 0.00 0.00 0.00 2.29
307 308 2.623418 TCTCCCTATCCCGCATGTAT 57.377 50.000 0.00 0.00 0.00 2.29
308 309 2.457598 TCTCCCTATCCCGCATGTATC 58.542 52.381 0.00 0.00 0.00 2.24
309 310 2.043115 TCTCCCTATCCCGCATGTATCT 59.957 50.000 0.00 0.00 0.00 1.98
310 311 2.428890 CTCCCTATCCCGCATGTATCTC 59.571 54.545 0.00 0.00 0.00 2.75
311 312 2.043115 TCCCTATCCCGCATGTATCTCT 59.957 50.000 0.00 0.00 0.00 3.10
312 313 2.834549 CCCTATCCCGCATGTATCTCTT 59.165 50.000 0.00 0.00 0.00 2.85
313 314 3.368843 CCCTATCCCGCATGTATCTCTTG 60.369 52.174 0.00 0.00 0.00 3.02
314 315 3.511540 CCTATCCCGCATGTATCTCTTGA 59.488 47.826 0.00 0.00 0.00 3.02
315 316 3.674528 ATCCCGCATGTATCTCTTGAG 57.325 47.619 0.00 0.00 0.00 3.02
316 317 1.688735 TCCCGCATGTATCTCTTGAGG 59.311 52.381 0.00 0.00 39.55 3.86
317 318 1.414181 CCCGCATGTATCTCTTGAGGT 59.586 52.381 0.00 0.00 38.70 3.85
318 319 2.158900 CCCGCATGTATCTCTTGAGGTT 60.159 50.000 0.00 0.00 38.70 3.50
319 320 2.868583 CCGCATGTATCTCTTGAGGTTG 59.131 50.000 0.00 0.00 36.77 3.77
320 321 3.525537 CGCATGTATCTCTTGAGGTTGT 58.474 45.455 0.00 0.00 0.00 3.32
321 322 3.935203 CGCATGTATCTCTTGAGGTTGTT 59.065 43.478 0.00 0.00 0.00 2.83
322 323 4.033358 CGCATGTATCTCTTGAGGTTGTTC 59.967 45.833 0.00 0.00 0.00 3.18
323 324 4.333926 GCATGTATCTCTTGAGGTTGTTCC 59.666 45.833 0.00 0.00 0.00 3.62
324 325 5.491070 CATGTATCTCTTGAGGTTGTTCCA 58.509 41.667 0.00 0.00 39.02 3.53
325 326 5.560722 TGTATCTCTTGAGGTTGTTCCAA 57.439 39.130 0.00 0.00 39.02 3.53
326 327 5.305585 TGTATCTCTTGAGGTTGTTCCAAC 58.694 41.667 0.00 0.00 39.02 3.77
327 328 2.833794 TCTCTTGAGGTTGTTCCAACG 58.166 47.619 1.40 0.00 39.02 4.10
328 329 2.432874 TCTCTTGAGGTTGTTCCAACGA 59.567 45.455 0.00 0.00 39.02 3.85
329 330 3.071023 TCTCTTGAGGTTGTTCCAACGAT 59.929 43.478 0.00 0.00 39.02 3.73
330 331 3.399330 TCTTGAGGTTGTTCCAACGATC 58.601 45.455 0.00 3.34 39.02 3.69
331 332 3.071023 TCTTGAGGTTGTTCCAACGATCT 59.929 43.478 0.00 0.00 36.46 2.75
332 333 3.040147 TGAGGTTGTTCCAACGATCTC 57.960 47.619 11.69 11.69 46.38 2.75
333 334 2.632996 TGAGGTTGTTCCAACGATCTCT 59.367 45.455 17.35 2.13 46.35 3.10
334 335 3.830178 TGAGGTTGTTCCAACGATCTCTA 59.170 43.478 17.35 5.28 46.35 2.43
335 336 4.174762 GAGGTTGTTCCAACGATCTCTAC 58.825 47.826 11.41 0.00 43.98 2.59
336 337 3.833070 AGGTTGTTCCAACGATCTCTACT 59.167 43.478 0.00 0.00 39.02 2.57
337 338 4.283722 AGGTTGTTCCAACGATCTCTACTT 59.716 41.667 0.00 0.00 39.02 2.24
338 339 4.389077 GGTTGTTCCAACGATCTCTACTTG 59.611 45.833 0.00 0.00 35.97 3.16
339 340 4.866508 TGTTCCAACGATCTCTACTTGT 57.133 40.909 0.00 0.00 0.00 3.16
340 341 5.970317 TGTTCCAACGATCTCTACTTGTA 57.030 39.130 0.00 0.00 0.00 2.41
341 342 6.335471 TGTTCCAACGATCTCTACTTGTAA 57.665 37.500 0.00 0.00 0.00 2.41
342 343 6.154445 TGTTCCAACGATCTCTACTTGTAAC 58.846 40.000 0.00 0.00 0.00 2.50
343 344 4.978186 TCCAACGATCTCTACTTGTAACG 58.022 43.478 0.00 0.00 0.00 3.18
344 345 3.546670 CCAACGATCTCTACTTGTAACGC 59.453 47.826 0.00 0.00 0.00 4.84
345 346 3.417690 ACGATCTCTACTTGTAACGCC 57.582 47.619 0.00 0.00 0.00 5.68
346 347 2.751259 ACGATCTCTACTTGTAACGCCA 59.249 45.455 0.00 0.00 0.00 5.69
347 348 3.106672 CGATCTCTACTTGTAACGCCAC 58.893 50.000 0.00 0.00 0.00 5.01
348 349 2.624316 TCTCTACTTGTAACGCCACG 57.376 50.000 0.00 0.00 0.00 4.94
349 350 2.153645 TCTCTACTTGTAACGCCACGA 58.846 47.619 0.00 0.00 0.00 4.35
350 351 2.161012 TCTCTACTTGTAACGCCACGAG 59.839 50.000 0.00 3.30 36.21 4.18
351 352 2.153645 TCTACTTGTAACGCCACGAGA 58.846 47.619 10.42 0.00 34.51 4.04
352 353 2.095567 TCTACTTGTAACGCCACGAGAC 60.096 50.000 10.42 0.00 34.51 3.36
353 354 0.662374 ACTTGTAACGCCACGAGACG 60.662 55.000 10.42 0.00 34.51 4.18
354 355 0.662374 CTTGTAACGCCACGAGACGT 60.662 55.000 0.00 0.00 46.07 4.34
355 356 0.661187 TTGTAACGCCACGAGACGTC 60.661 55.000 7.70 7.70 42.68 4.34
356 357 1.208614 GTAACGCCACGAGACGTCT 59.791 57.895 20.18 20.18 42.68 4.18
357 358 0.792356 GTAACGCCACGAGACGTCTC 60.792 60.000 31.46 31.46 42.68 3.36
358 359 0.952497 TAACGCCACGAGACGTCTCT 60.952 55.000 35.60 23.04 42.68 3.10
359 360 2.098680 CGCCACGAGACGTCTCTC 59.901 66.667 35.60 22.60 38.32 3.20
377 378 8.814733 CGTCTCTCGTCAGAATCAATATATAC 57.185 38.462 0.00 0.00 34.52 1.47
378 379 7.906010 CGTCTCTCGTCAGAATCAATATATACC 59.094 40.741 0.00 0.00 34.52 2.73
379 380 8.952278 GTCTCTCGTCAGAATCAATATATACCT 58.048 37.037 0.00 0.00 0.00 3.08
380 381 8.951243 TCTCTCGTCAGAATCAATATATACCTG 58.049 37.037 0.00 0.00 0.00 4.00
381 382 7.539436 TCTCGTCAGAATCAATATATACCTGC 58.461 38.462 0.00 0.00 0.00 4.85
382 383 6.322491 TCGTCAGAATCAATATATACCTGCG 58.678 40.000 0.00 0.00 0.00 5.18
383 384 5.516696 CGTCAGAATCAATATATACCTGCGG 59.483 44.000 0.00 0.00 0.00 5.69
384 385 5.292101 GTCAGAATCAATATATACCTGCGGC 59.708 44.000 0.00 0.00 0.00 6.53
385 386 5.187772 TCAGAATCAATATATACCTGCGGCT 59.812 40.000 0.00 0.00 0.00 5.52
386 387 5.521735 CAGAATCAATATATACCTGCGGCTC 59.478 44.000 0.00 0.00 0.00 4.70
387 388 5.423610 AGAATCAATATATACCTGCGGCTCT 59.576 40.000 0.00 0.00 0.00 4.09
388 389 4.720649 TCAATATATACCTGCGGCTCTC 57.279 45.455 0.00 0.00 0.00 3.20
389 390 3.447586 TCAATATATACCTGCGGCTCTCC 59.552 47.826 0.00 0.00 0.00 3.71
390 391 1.848652 TATATACCTGCGGCTCTCCC 58.151 55.000 0.00 0.00 0.00 4.30
391 392 0.115349 ATATACCTGCGGCTCTCCCT 59.885 55.000 0.00 0.00 0.00 4.20
392 393 0.827925 TATACCTGCGGCTCTCCCTG 60.828 60.000 0.00 0.00 0.00 4.45
393 394 2.880629 ATACCTGCGGCTCTCCCTGT 62.881 60.000 0.00 0.00 0.00 4.00
394 395 2.219449 TACCTGCGGCTCTCCCTGTA 62.219 60.000 0.00 0.00 0.00 2.74
395 396 2.136878 CCTGCGGCTCTCCCTGTAT 61.137 63.158 0.00 0.00 0.00 2.29
396 397 1.068753 CTGCGGCTCTCCCTGTATG 59.931 63.158 0.00 0.00 0.00 2.39
397 398 1.381191 TGCGGCTCTCCCTGTATGA 60.381 57.895 0.00 0.00 0.00 2.15
398 399 0.975556 TGCGGCTCTCCCTGTATGAA 60.976 55.000 0.00 0.00 0.00 2.57
399 400 0.249657 GCGGCTCTCCCTGTATGAAG 60.250 60.000 0.00 0.00 0.00 3.02
400 401 1.403814 CGGCTCTCCCTGTATGAAGA 58.596 55.000 0.00 0.00 0.00 2.87
401 402 1.339610 CGGCTCTCCCTGTATGAAGAG 59.660 57.143 0.00 0.00 0.00 2.85
402 403 2.393646 GGCTCTCCCTGTATGAAGAGT 58.606 52.381 0.00 0.00 0.00 3.24
403 404 3.567397 GGCTCTCCCTGTATGAAGAGTA 58.433 50.000 0.00 0.00 0.00 2.59
404 405 3.572255 GGCTCTCCCTGTATGAAGAGTAG 59.428 52.174 0.00 0.00 0.00 2.57
405 406 3.572255 GCTCTCCCTGTATGAAGAGTAGG 59.428 52.174 0.00 0.00 0.00 3.18
406 407 4.690261 GCTCTCCCTGTATGAAGAGTAGGA 60.690 50.000 0.00 0.00 0.00 2.94
407 408 5.450453 CTCTCCCTGTATGAAGAGTAGGAA 58.550 45.833 0.00 0.00 0.00 3.36
408 409 5.202004 TCTCCCTGTATGAAGAGTAGGAAC 58.798 45.833 0.00 0.00 0.00 3.62
409 410 3.952323 TCCCTGTATGAAGAGTAGGAACG 59.048 47.826 0.00 0.00 0.00 3.95
410 411 3.491104 CCCTGTATGAAGAGTAGGAACGC 60.491 52.174 0.00 0.00 0.00 4.84
411 412 3.381908 CCTGTATGAAGAGTAGGAACGCT 59.618 47.826 0.00 0.00 37.35 5.07
412 413 4.142138 CCTGTATGAAGAGTAGGAACGCTT 60.142 45.833 0.00 0.00 46.80 4.68
426 427 4.278678 GAACGCTTCCATATTTCACAGG 57.721 45.455 0.00 0.00 0.00 4.00
427 428 2.017049 ACGCTTCCATATTTCACAGGC 58.983 47.619 0.00 0.00 0.00 4.85
428 429 1.334869 CGCTTCCATATTTCACAGGCC 59.665 52.381 0.00 0.00 0.00 5.19
429 430 1.334869 GCTTCCATATTTCACAGGCCG 59.665 52.381 0.00 0.00 0.00 6.13
430 431 2.643551 CTTCCATATTTCACAGGCCGT 58.356 47.619 0.00 0.00 0.00 5.68
431 432 3.804036 CTTCCATATTTCACAGGCCGTA 58.196 45.455 0.00 0.00 0.00 4.02
432 433 4.389374 CTTCCATATTTCACAGGCCGTAT 58.611 43.478 0.00 0.00 0.00 3.06
433 434 3.738982 TCCATATTTCACAGGCCGTATG 58.261 45.455 0.00 0.00 0.00 2.39
434 435 2.226437 CCATATTTCACAGGCCGTATGC 59.774 50.000 0.00 0.00 40.16 3.14
435 436 2.700722 TATTTCACAGGCCGTATGCA 57.299 45.000 0.00 0.00 43.89 3.96
436 437 2.057137 ATTTCACAGGCCGTATGCAT 57.943 45.000 3.79 3.79 43.89 3.96
437 438 1.378531 TTTCACAGGCCGTATGCATC 58.621 50.000 0.19 0.00 43.89 3.91
438 439 0.541392 TTCACAGGCCGTATGCATCT 59.459 50.000 0.19 0.00 43.89 2.90
439 440 0.541392 TCACAGGCCGTATGCATCTT 59.459 50.000 0.19 0.00 43.89 2.40
440 441 1.065491 TCACAGGCCGTATGCATCTTT 60.065 47.619 0.19 0.00 43.89 2.52
441 442 1.745087 CACAGGCCGTATGCATCTTTT 59.255 47.619 0.19 0.00 43.89 2.27
442 443 2.164219 CACAGGCCGTATGCATCTTTTT 59.836 45.455 0.19 0.00 43.89 1.94
443 444 2.164219 ACAGGCCGTATGCATCTTTTTG 59.836 45.455 0.19 0.00 43.89 2.44
444 445 2.423185 CAGGCCGTATGCATCTTTTTGA 59.577 45.455 0.19 0.00 43.89 2.69
445 446 3.067180 CAGGCCGTATGCATCTTTTTGAT 59.933 43.478 0.19 0.00 43.89 2.57
446 447 3.701040 AGGCCGTATGCATCTTTTTGATT 59.299 39.130 0.19 0.00 43.89 2.57
447 448 4.044426 GGCCGTATGCATCTTTTTGATTC 58.956 43.478 0.19 0.00 43.89 2.52
448 449 4.439974 GGCCGTATGCATCTTTTTGATTCA 60.440 41.667 0.19 0.00 43.89 2.57
449 450 4.736793 GCCGTATGCATCTTTTTGATTCAG 59.263 41.667 0.19 0.00 40.77 3.02
450 451 5.449041 GCCGTATGCATCTTTTTGATTCAGA 60.449 40.000 0.19 0.00 40.77 3.27
451 452 6.197276 CCGTATGCATCTTTTTGATTCAGAG 58.803 40.000 0.19 0.00 32.27 3.35
452 453 6.197276 CGTATGCATCTTTTTGATTCAGAGG 58.803 40.000 0.19 0.00 32.27 3.69
453 454 4.445452 TGCATCTTTTTGATTCAGAGGC 57.555 40.909 4.02 4.02 43.16 4.70
454 455 3.194116 TGCATCTTTTTGATTCAGAGGCC 59.806 43.478 0.00 0.00 42.39 5.19
455 456 3.733077 GCATCTTTTTGATTCAGAGGCCG 60.733 47.826 0.00 0.00 38.19 6.13
456 457 2.436417 TCTTTTTGATTCAGAGGCCGG 58.564 47.619 0.00 0.00 0.00 6.13
457 458 1.474077 CTTTTTGATTCAGAGGCCGGG 59.526 52.381 2.18 0.00 0.00 5.73
458 459 0.323360 TTTTGATTCAGAGGCCGGGG 60.323 55.000 2.18 0.00 0.00 5.73
459 460 1.204786 TTTGATTCAGAGGCCGGGGA 61.205 55.000 2.18 0.00 0.00 4.81
460 461 1.626356 TTGATTCAGAGGCCGGGGAG 61.626 60.000 2.18 0.00 0.00 4.30
461 462 2.041265 ATTCAGAGGCCGGGGAGT 59.959 61.111 2.18 0.00 0.00 3.85
462 463 2.034048 GATTCAGAGGCCGGGGAGTC 62.034 65.000 2.18 0.00 0.00 3.36
463 464 4.779733 TCAGAGGCCGGGGAGTCC 62.780 72.222 2.18 0.00 0.00 3.85
532 533 1.531739 ATCACGCACGGCCCATTTTT 61.532 50.000 0.00 0.00 0.00 1.94
573 574 3.307410 GGCCAACCTTTCTTATTTTGGGG 60.307 47.826 0.00 0.00 37.73 4.96
592 593 3.119137 GGGGTAAGCTGCCATGTTTTTAG 60.119 47.826 9.46 0.00 0.00 1.85
750 751 5.741982 GCACACGTTTCACTTTTAGTTGAAT 59.258 36.000 0.00 0.00 0.00 2.57
783 784 3.681874 GCGACAGGGAAGGCTTAATAACT 60.682 47.826 0.00 0.00 0.00 2.24
842 844 3.606346 CACGAAGTTTTCACTTTTGCGTT 59.394 39.130 0.00 0.00 43.79 4.84
923 925 5.986135 CCTATATATATCGCAGAAACCAGCC 59.014 44.000 0.00 0.00 43.58 4.85
933 935 2.760387 GAAACCAGCCTGCTTGCAGC 62.760 60.000 16.37 11.84 42.82 5.25
1110 1112 2.206750 GTTTGGAAGCACACAGTCGTA 58.793 47.619 0.00 0.00 0.00 3.43
1170 1172 1.208535 CTTATTACGGTGCAGTCCCCA 59.791 52.381 0.00 0.00 0.00 4.96
1390 1392 1.691219 GGCCCCATTCTGGACTTCA 59.309 57.895 0.00 0.00 40.96 3.02
1443 1445 3.810896 GGCGTGTTTCGGATGGCC 61.811 66.667 0.00 0.00 40.26 5.36
1483 1485 0.675837 GCTTGTGCCAGAGATGAGCA 60.676 55.000 0.00 0.00 0.00 4.26
1508 1510 5.012239 ACCCGATAAGTACAGTGTCTACAA 58.988 41.667 0.00 0.00 0.00 2.41
1544 1546 2.637383 AACTCAGCTCGGACCGTCC 61.637 63.158 14.79 7.59 0.00 4.79
1672 1674 3.067106 CCAGAAACGTGCTGTAGTTCAT 58.933 45.455 15.10 0.00 0.00 2.57
1754 1766 1.399727 GGATCGTGGCGAAGTTTGTTG 60.400 52.381 0.00 0.00 39.99 3.33
1765 1777 6.099341 GGCGAAGTTTGTTGATGGAATAAAT 58.901 36.000 0.00 0.00 28.63 1.40
1847 2446 5.220912 GCACATGCTTGCTATCTCATTAACA 60.221 40.000 0.00 0.00 39.59 2.41
1867 2466 2.168936 CAGCCCACCATAAAATGCATGT 59.831 45.455 0.00 0.00 0.00 3.21
1996 2901 3.788333 AATGTTCATCAAATCTGCCCG 57.212 42.857 0.00 0.00 0.00 6.13
1997 2902 2.198827 TGTTCATCAAATCTGCCCGT 57.801 45.000 0.00 0.00 0.00 5.28
2013 2919 7.305813 TCTGCCCGTGATTTACCTTATATTA 57.694 36.000 0.00 0.00 0.00 0.98
2014 2920 7.913789 TCTGCCCGTGATTTACCTTATATTAT 58.086 34.615 0.00 0.00 0.00 1.28
2018 2924 8.827677 GCCCGTGATTTACCTTATATTATGATC 58.172 37.037 0.00 0.00 0.00 2.92
2035 2941 8.723942 ATTATGATCAGAAGTTTGGTGAGTAC 57.276 34.615 8.95 0.00 0.00 2.73
2042 2948 8.740123 TCAGAAGTTTGGTGAGTACATTAAAA 57.260 30.769 0.00 0.00 0.00 1.52
2098 3008 8.826765 AGATGATTGATTATTATACGGGGAAGT 58.173 33.333 0.00 0.00 0.00 3.01
2105 3015 4.847990 ATTATACGGGGAAGTTTGGACA 57.152 40.909 0.00 0.00 0.00 4.02
2117 3027 0.631753 TTTGGACAAAGGGGTGGTGA 59.368 50.000 0.00 0.00 0.00 4.02
2127 3037 0.609406 GGGGTGGTGAGAAGAAAGGC 60.609 60.000 0.00 0.00 0.00 4.35
2194 3388 4.207165 AGTGCGTTGCAAAGGGATATAAT 58.793 39.130 14.31 0.00 41.47 1.28
2276 3470 7.630242 AATGTTCATCAAATTCTGACCGTAT 57.370 32.000 0.00 0.00 36.69 3.06
2395 3594 0.978907 GAAGGTTGGACGAAGGGGTA 59.021 55.000 0.00 0.00 0.00 3.69
2397 3596 0.115745 AGGTTGGACGAAGGGGTAGA 59.884 55.000 0.00 0.00 0.00 2.59
2400 3599 2.108970 GTTGGACGAAGGGGTAGAGAT 58.891 52.381 0.00 0.00 0.00 2.75
2403 3602 3.294214 TGGACGAAGGGGTAGAGATAAC 58.706 50.000 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.883731 AGTGAAAGTCTATTTCGATATGTTTGG 58.116 33.333 0.00 0.00 0.00 3.28
4 5 9.436957 ACAAAGTGAAAGTCTATTTCGATATGT 57.563 29.630 0.00 0.00 0.00 2.29
5 6 9.907576 GACAAAGTGAAAGTCTATTTCGATATG 57.092 33.333 0.00 0.00 0.00 1.78
6 7 9.653287 TGACAAAGTGAAAGTCTATTTCGATAT 57.347 29.630 0.00 0.00 33.56 1.63
7 8 9.140286 CTGACAAAGTGAAAGTCTATTTCGATA 57.860 33.333 0.00 0.00 33.56 2.92
9 10 7.207383 TCTGACAAAGTGAAAGTCTATTTCGA 58.793 34.615 0.00 0.00 33.56 3.71
10 11 7.382488 TCTCTGACAAAGTGAAAGTCTATTTCG 59.618 37.037 0.00 0.00 33.56 3.46
11 12 8.594881 TCTCTGACAAAGTGAAAGTCTATTTC 57.405 34.615 0.00 0.00 33.56 2.17
12 13 8.964476 TTCTCTGACAAAGTGAAAGTCTATTT 57.036 30.769 0.00 0.00 35.88 1.40
13 14 8.964476 TTTCTCTGACAAAGTGAAAGTCTATT 57.036 30.769 0.00 0.00 41.28 1.73
21 22 5.065218 GCAACTCTTTCTCTGACAAAGTGAA 59.935 40.000 12.35 0.00 36.78 3.18
23 24 4.333649 TGCAACTCTTTCTCTGACAAAGTG 59.666 41.667 5.51 5.82 33.32 3.16
26 27 5.182950 TGTTTGCAACTCTTTCTCTGACAAA 59.817 36.000 0.00 0.00 0.00 2.83
27 28 4.699735 TGTTTGCAACTCTTTCTCTGACAA 59.300 37.500 0.00 0.00 0.00 3.18
28 29 4.260985 TGTTTGCAACTCTTTCTCTGACA 58.739 39.130 0.00 0.00 0.00 3.58
30 31 5.895636 TTTGTTTGCAACTCTTTCTCTGA 57.104 34.783 0.00 0.00 33.82 3.27
31 32 7.420800 ACTATTTGTTTGCAACTCTTTCTCTG 58.579 34.615 0.00 0.00 33.82 3.35
33 34 7.168135 CCAACTATTTGTTTGCAACTCTTTCTC 59.832 37.037 0.00 0.00 36.63 2.87
35 36 6.978080 TCCAACTATTTGTTTGCAACTCTTTC 59.022 34.615 0.00 0.00 36.63 2.62
39 40 6.072112 TCTCCAACTATTTGTTTGCAACTC 57.928 37.500 0.00 0.00 36.63 3.01
41 42 5.863935 GGATCTCCAACTATTTGTTTGCAAC 59.136 40.000 0.00 0.00 36.63 4.17
45 46 4.700213 ACCGGATCTCCAACTATTTGTTTG 59.300 41.667 9.46 0.00 36.63 2.93
46 47 4.918588 ACCGGATCTCCAACTATTTGTTT 58.081 39.130 9.46 0.00 36.63 2.83
47 48 4.569719 ACCGGATCTCCAACTATTTGTT 57.430 40.909 9.46 0.00 39.92 2.83
48 49 4.019681 TGAACCGGATCTCCAACTATTTGT 60.020 41.667 9.46 0.00 35.14 2.83
49 50 4.513442 TGAACCGGATCTCCAACTATTTG 58.487 43.478 9.46 0.00 35.14 2.32
50 51 4.837093 TGAACCGGATCTCCAACTATTT 57.163 40.909 9.46 0.00 35.14 1.40
51 52 5.368989 GAATGAACCGGATCTCCAACTATT 58.631 41.667 9.46 0.00 35.14 1.73
52 53 4.202367 GGAATGAACCGGATCTCCAACTAT 60.202 45.833 9.46 0.00 35.14 2.12
54 55 2.092914 GGAATGAACCGGATCTCCAACT 60.093 50.000 9.46 0.00 35.14 3.16
55 56 2.289565 GGAATGAACCGGATCTCCAAC 58.710 52.381 9.46 0.00 35.14 3.77
56 57 1.912731 TGGAATGAACCGGATCTCCAA 59.087 47.619 17.24 4.75 35.14 3.53
57 58 1.578897 TGGAATGAACCGGATCTCCA 58.421 50.000 16.04 16.04 35.14 3.86
58 59 2.551071 GGATGGAATGAACCGGATCTCC 60.551 54.545 9.46 10.98 0.00 3.71
59 60 2.104792 TGGATGGAATGAACCGGATCTC 59.895 50.000 9.46 0.00 0.00 2.75
60 61 2.126882 TGGATGGAATGAACCGGATCT 58.873 47.619 9.46 0.00 0.00 2.75
61 62 2.638480 TGGATGGAATGAACCGGATC 57.362 50.000 9.46 6.62 0.00 3.36
63 64 1.064758 CCTTGGATGGAATGAACCGGA 60.065 52.381 9.46 0.00 0.00 5.14
64 65 1.064758 TCCTTGGATGGAATGAACCGG 60.065 52.381 0.00 0.00 32.39 5.28
65 66 2.418368 TCCTTGGATGGAATGAACCG 57.582 50.000 0.00 0.00 32.39 4.44
66 67 3.902218 TGATCCTTGGATGGAATGAACC 58.098 45.455 6.92 0.00 39.85 3.62
67 68 4.952335 AGTTGATCCTTGGATGGAATGAAC 59.048 41.667 6.92 0.00 39.85 3.18
68 69 5.197224 AGTTGATCCTTGGATGGAATGAA 57.803 39.130 6.92 0.00 39.85 2.57
69 70 4.868172 AGTTGATCCTTGGATGGAATGA 57.132 40.909 6.92 0.00 39.85 2.57
70 71 4.441079 GCAAGTTGATCCTTGGATGGAATG 60.441 45.833 7.16 1.71 41.70 2.67
72 73 3.091545 GCAAGTTGATCCTTGGATGGAA 58.908 45.455 7.16 0.00 41.70 3.53
74 75 2.426024 CTGCAAGTTGATCCTTGGATGG 59.574 50.000 7.16 0.00 41.17 3.51
75 76 3.128242 GTCTGCAAGTTGATCCTTGGATG 59.872 47.826 7.16 5.58 41.17 3.51
76 77 3.350833 GTCTGCAAGTTGATCCTTGGAT 58.649 45.455 7.16 1.18 41.17 3.41
77 78 2.783135 GTCTGCAAGTTGATCCTTGGA 58.217 47.619 7.16 9.05 41.70 3.53
79 80 1.466167 CCGTCTGCAAGTTGATCCTTG 59.534 52.381 7.16 7.21 43.76 3.61
81 82 0.036010 CCCGTCTGCAAGTTGATCCT 60.036 55.000 7.16 0.00 33.76 3.24
82 83 0.321653 ACCCGTCTGCAAGTTGATCC 60.322 55.000 7.16 0.00 33.76 3.36
84 85 1.202758 TGAACCCGTCTGCAAGTTGAT 60.203 47.619 7.16 0.00 33.76 2.57
85 86 0.179234 TGAACCCGTCTGCAAGTTGA 59.821 50.000 7.16 0.00 33.76 3.18
86 87 0.307760 GTGAACCCGTCTGCAAGTTG 59.692 55.000 0.00 0.00 33.76 3.16
89 90 1.002468 CTTTGTGAACCCGTCTGCAAG 60.002 52.381 0.00 0.00 0.00 4.01
91 92 0.817634 CCTTTGTGAACCCGTCTGCA 60.818 55.000 0.00 0.00 0.00 4.41
92 93 1.949257 CCTTTGTGAACCCGTCTGC 59.051 57.895 0.00 0.00 0.00 4.26
93 94 0.817634 TGCCTTTGTGAACCCGTCTG 60.818 55.000 0.00 0.00 0.00 3.51
94 95 0.818040 GTGCCTTTGTGAACCCGTCT 60.818 55.000 0.00 0.00 0.00 4.18
96 97 0.470766 TAGTGCCTTTGTGAACCCGT 59.529 50.000 0.00 0.00 0.00 5.28
97 98 0.872388 GTAGTGCCTTTGTGAACCCG 59.128 55.000 0.00 0.00 0.00 5.28
98 99 1.244816 GGTAGTGCCTTTGTGAACCC 58.755 55.000 0.00 0.00 0.00 4.11
99 100 1.975660 TGGTAGTGCCTTTGTGAACC 58.024 50.000 0.00 0.00 38.35 3.62
100 101 2.034179 GGTTGGTAGTGCCTTTGTGAAC 59.966 50.000 0.00 0.00 38.35 3.18
101 102 2.303175 GGTTGGTAGTGCCTTTGTGAA 58.697 47.619 0.00 0.00 38.35 3.18
102 103 1.213182 TGGTTGGTAGTGCCTTTGTGA 59.787 47.619 0.00 0.00 38.35 3.58
103 104 1.608590 CTGGTTGGTAGTGCCTTTGTG 59.391 52.381 0.00 0.00 38.35 3.33
104 105 1.493022 TCTGGTTGGTAGTGCCTTTGT 59.507 47.619 0.00 0.00 38.35 2.83
105 106 2.270352 TCTGGTTGGTAGTGCCTTTG 57.730 50.000 0.00 0.00 38.35 2.77
106 107 2.863809 CTTCTGGTTGGTAGTGCCTTT 58.136 47.619 0.00 0.00 38.35 3.11
107 108 1.545651 GCTTCTGGTTGGTAGTGCCTT 60.546 52.381 0.00 0.00 38.35 4.35
108 109 0.036875 GCTTCTGGTTGGTAGTGCCT 59.963 55.000 0.00 0.00 38.35 4.75
110 111 1.897560 AAGCTTCTGGTTGGTAGTGC 58.102 50.000 0.00 0.00 32.09 4.40
112 113 3.857157 TCAAAGCTTCTGGTTGGTAGT 57.143 42.857 0.00 0.00 33.79 2.73
113 114 4.389374 TCTTCAAAGCTTCTGGTTGGTAG 58.611 43.478 0.00 0.00 33.79 3.18
116 117 4.861102 ATTCTTCAAAGCTTCTGGTTGG 57.139 40.909 0.00 0.00 33.79 3.77
117 118 5.400485 CGAAATTCTTCAAAGCTTCTGGTTG 59.600 40.000 0.00 0.00 33.79 3.77
118 119 5.067805 ACGAAATTCTTCAAAGCTTCTGGTT 59.932 36.000 0.00 0.00 35.14 3.67
119 120 4.580580 ACGAAATTCTTCAAAGCTTCTGGT 59.419 37.500 0.00 0.00 0.00 4.00
120 121 5.113502 ACGAAATTCTTCAAAGCTTCTGG 57.886 39.130 0.00 0.00 0.00 3.86
122 123 4.511826 ACGACGAAATTCTTCAAAGCTTCT 59.488 37.500 0.00 0.00 0.00 2.85
123 124 4.773510 ACGACGAAATTCTTCAAAGCTTC 58.226 39.130 0.00 0.00 0.00 3.86
124 125 4.813296 ACGACGAAATTCTTCAAAGCTT 57.187 36.364 0.00 0.00 0.00 3.74
126 127 6.534934 AGATTACGACGAAATTCTTCAAAGC 58.465 36.000 0.00 0.00 0.00 3.51
131 132 8.182658 AGGTTTAGATTACGACGAAATTCTTC 57.817 34.615 0.00 0.00 0.00 2.87
132 133 9.298774 CTAGGTTTAGATTACGACGAAATTCTT 57.701 33.333 0.00 0.00 0.00 2.52
134 135 8.626093 ACTAGGTTTAGATTACGACGAAATTC 57.374 34.615 0.00 0.00 0.00 2.17
135 136 8.992835 AACTAGGTTTAGATTACGACGAAATT 57.007 30.769 0.00 0.00 0.00 1.82
137 138 6.742718 CGAACTAGGTTTAGATTACGACGAAA 59.257 38.462 0.00 0.00 0.00 3.46
138 139 6.250819 CGAACTAGGTTTAGATTACGACGAA 58.749 40.000 0.00 0.00 0.00 3.85
139 140 5.220662 CCGAACTAGGTTTAGATTACGACGA 60.221 44.000 0.00 0.00 0.00 4.20
140 141 4.966366 CCGAACTAGGTTTAGATTACGACG 59.034 45.833 0.00 0.00 0.00 5.12
141 142 5.884771 ACCGAACTAGGTTTAGATTACGAC 58.115 41.667 0.00 0.00 43.00 4.34
154 155 4.578928 CCCCATAATCAAAACCGAACTAGG 59.421 45.833 0.00 0.00 37.30 3.02
155 156 4.578928 CCCCCATAATCAAAACCGAACTAG 59.421 45.833 0.00 0.00 0.00 2.57
156 157 4.227754 TCCCCCATAATCAAAACCGAACTA 59.772 41.667 0.00 0.00 0.00 2.24
158 159 3.358118 TCCCCCATAATCAAAACCGAAC 58.642 45.455 0.00 0.00 0.00 3.95
159 160 3.010808 ACTCCCCCATAATCAAAACCGAA 59.989 43.478 0.00 0.00 0.00 4.30
161 162 2.687935 CACTCCCCCATAATCAAAACCG 59.312 50.000 0.00 0.00 0.00 4.44
163 164 6.844097 TTAACACTCCCCCATAATCAAAAC 57.156 37.500 0.00 0.00 0.00 2.43
164 165 6.782988 TGTTTAACACTCCCCCATAATCAAAA 59.217 34.615 0.00 0.00 0.00 2.44
167 168 5.522315 TGTTTAACACTCCCCCATAATCA 57.478 39.130 0.00 0.00 0.00 2.57
169 170 6.086011 TGATGTTTAACACTCCCCCATAAT 57.914 37.500 0.00 0.00 0.00 1.28
171 172 5.725551 ATGATGTTTAACACTCCCCCATA 57.274 39.130 0.00 0.00 0.00 2.74
173 174 5.725551 ATATGATGTTTAACACTCCCCCA 57.274 39.130 0.00 0.00 0.00 4.96
174 175 5.891551 ACAATATGATGTTTAACACTCCCCC 59.108 40.000 0.00 0.00 0.00 5.40
175 176 6.601613 TGACAATATGATGTTTAACACTCCCC 59.398 38.462 0.00 0.00 32.57 4.81
178 179 7.898309 GTCGTGACAATATGATGTTTAACACTC 59.102 37.037 0.00 0.65 32.57 3.51
180 181 7.477422 GTGTCGTGACAATATGATGTTTAACAC 59.523 37.037 3.92 0.00 43.77 3.32
181 182 7.360522 GGTGTCGTGACAATATGATGTTTAACA 60.361 37.037 3.92 0.00 43.77 2.41
182 183 6.959311 GGTGTCGTGACAATATGATGTTTAAC 59.041 38.462 3.92 0.00 43.77 2.01
183 184 6.651225 TGGTGTCGTGACAATATGATGTTTAA 59.349 34.615 3.92 0.00 43.77 1.52
184 185 6.166982 TGGTGTCGTGACAATATGATGTTTA 58.833 36.000 3.92 0.00 43.77 2.01
186 187 4.574892 TGGTGTCGTGACAATATGATGTT 58.425 39.130 3.92 0.00 43.77 2.71
187 188 4.200838 TGGTGTCGTGACAATATGATGT 57.799 40.909 3.92 0.00 43.77 3.06
188 189 5.065090 ACATTGGTGTCGTGACAATATGATG 59.935 40.000 18.87 14.20 43.77 3.07
190 191 4.574892 ACATTGGTGTCGTGACAATATGA 58.425 39.130 18.87 2.86 43.77 2.15
191 192 4.944962 ACATTGGTGTCGTGACAATATG 57.055 40.909 3.92 10.48 43.77 1.78
192 193 5.007626 GCATACATTGGTGTCGTGACAATAT 59.992 40.000 3.92 0.00 43.77 1.28
193 194 4.331443 GCATACATTGGTGTCGTGACAATA 59.669 41.667 3.92 0.00 43.77 1.90
197 198 1.060553 CGCATACATTGGTGTCGTGAC 59.939 52.381 0.00 0.00 39.77 3.67
198 199 1.337354 ACGCATACATTGGTGTCGTGA 60.337 47.619 10.43 0.00 39.77 4.35
199 200 1.075542 ACGCATACATTGGTGTCGTG 58.924 50.000 10.43 0.00 39.77 4.35
200 201 1.803334 AACGCATACATTGGTGTCGT 58.197 45.000 0.00 0.00 37.75 4.34
201 202 2.668945 TGTAACGCATACATTGGTGTCG 59.331 45.455 0.00 0.00 39.60 4.35
227 228 9.940974 TCCCTAACTACCTAACTTGATATACAA 57.059 33.333 0.00 0.00 36.97 2.41
233 234 7.452189 GCTCTATCCCTAACTACCTAACTTGAT 59.548 40.741 0.00 0.00 0.00 2.57
234 235 6.776603 GCTCTATCCCTAACTACCTAACTTGA 59.223 42.308 0.00 0.00 0.00 3.02
235 236 6.778559 AGCTCTATCCCTAACTACCTAACTTG 59.221 42.308 0.00 0.00 0.00 3.16
239 240 7.645132 ACTAGCTCTATCCCTAACTACCTAA 57.355 40.000 0.00 0.00 0.00 2.69
240 241 7.645132 AACTAGCTCTATCCCTAACTACCTA 57.355 40.000 0.00 0.00 0.00 3.08
246 247 9.833917 AAATAACAAACTAGCTCTATCCCTAAC 57.166 33.333 0.00 0.00 0.00 2.34
249 250 9.833917 GTTAAATAACAAACTAGCTCTATCCCT 57.166 33.333 0.00 0.00 36.25 4.20
274 275 6.785466 GGGATAGGGAGAAGAGATAGAAAAGT 59.215 42.308 0.00 0.00 0.00 2.66
275 276 6.071616 CGGGATAGGGAGAAGAGATAGAAAAG 60.072 46.154 0.00 0.00 0.00 2.27
276 277 5.775701 CGGGATAGGGAGAAGAGATAGAAAA 59.224 44.000 0.00 0.00 0.00 2.29
277 278 5.326069 CGGGATAGGGAGAAGAGATAGAAA 58.674 45.833 0.00 0.00 0.00 2.52
279 280 3.308545 GCGGGATAGGGAGAAGAGATAGA 60.309 52.174 0.00 0.00 0.00 1.98
280 281 3.020984 GCGGGATAGGGAGAAGAGATAG 58.979 54.545 0.00 0.00 0.00 2.08
281 282 2.378886 TGCGGGATAGGGAGAAGAGATA 59.621 50.000 0.00 0.00 0.00 1.98
282 283 1.148027 TGCGGGATAGGGAGAAGAGAT 59.852 52.381 0.00 0.00 0.00 2.75
283 284 0.556258 TGCGGGATAGGGAGAAGAGA 59.444 55.000 0.00 0.00 0.00 3.10
284 285 1.274728 CATGCGGGATAGGGAGAAGAG 59.725 57.143 0.00 0.00 0.00 2.85
285 286 1.342074 CATGCGGGATAGGGAGAAGA 58.658 55.000 0.00 0.00 0.00 2.87
286 287 1.051812 ACATGCGGGATAGGGAGAAG 58.948 55.000 0.00 0.00 0.00 2.85
287 288 2.391926 TACATGCGGGATAGGGAGAA 57.608 50.000 0.00 0.00 0.00 2.87
288 289 2.043115 AGATACATGCGGGATAGGGAGA 59.957 50.000 0.00 0.00 0.00 3.71
289 290 2.428890 GAGATACATGCGGGATAGGGAG 59.571 54.545 0.00 0.00 0.00 4.30
290 291 2.043115 AGAGATACATGCGGGATAGGGA 59.957 50.000 0.00 0.00 0.00 4.20
291 292 2.461695 AGAGATACATGCGGGATAGGG 58.538 52.381 0.00 0.00 0.00 3.53
292 293 3.511540 TCAAGAGATACATGCGGGATAGG 59.488 47.826 0.00 0.00 0.00 2.57
293 294 4.381398 CCTCAAGAGATACATGCGGGATAG 60.381 50.000 0.00 0.00 0.00 2.08
294 295 3.511540 CCTCAAGAGATACATGCGGGATA 59.488 47.826 0.00 0.00 0.00 2.59
295 296 2.301296 CCTCAAGAGATACATGCGGGAT 59.699 50.000 0.00 0.00 0.00 3.85
296 297 1.688735 CCTCAAGAGATACATGCGGGA 59.311 52.381 0.00 0.00 0.00 5.14
297 298 1.414181 ACCTCAAGAGATACATGCGGG 59.586 52.381 0.00 0.00 0.00 6.13
298 299 2.868583 CAACCTCAAGAGATACATGCGG 59.131 50.000 0.00 0.00 0.00 5.69
299 300 3.525537 ACAACCTCAAGAGATACATGCG 58.474 45.455 0.00 0.00 0.00 4.73
300 301 4.333926 GGAACAACCTCAAGAGATACATGC 59.666 45.833 0.00 0.00 35.41 4.06
301 302 5.491070 TGGAACAACCTCAAGAGATACATG 58.509 41.667 0.00 0.00 39.86 3.21
302 303 5.762179 TGGAACAACCTCAAGAGATACAT 57.238 39.130 0.00 0.00 39.86 2.29
318 319 4.866508 ACAAGTAGAGATCGTTGGAACA 57.133 40.909 0.00 0.00 0.00 3.18
319 320 5.285607 CGTTACAAGTAGAGATCGTTGGAAC 59.714 44.000 10.44 10.44 39.42 3.62
320 321 5.396484 CGTTACAAGTAGAGATCGTTGGAA 58.604 41.667 0.00 0.00 0.00 3.53
321 322 4.673580 GCGTTACAAGTAGAGATCGTTGGA 60.674 45.833 0.00 0.00 0.00 3.53
322 323 3.546670 GCGTTACAAGTAGAGATCGTTGG 59.453 47.826 0.00 0.00 0.00 3.77
323 324 3.546670 GGCGTTACAAGTAGAGATCGTTG 59.453 47.826 0.00 0.00 0.00 4.10
324 325 3.192001 TGGCGTTACAAGTAGAGATCGTT 59.808 43.478 0.00 0.00 0.00 3.85
325 326 2.751259 TGGCGTTACAAGTAGAGATCGT 59.249 45.455 0.00 0.00 0.00 3.73
326 327 3.106672 GTGGCGTTACAAGTAGAGATCG 58.893 50.000 0.00 0.00 0.00 3.69
327 328 3.106672 CGTGGCGTTACAAGTAGAGATC 58.893 50.000 0.00 0.00 0.00 2.75
328 329 2.751259 TCGTGGCGTTACAAGTAGAGAT 59.249 45.455 0.00 0.00 0.00 2.75
329 330 2.153645 TCGTGGCGTTACAAGTAGAGA 58.846 47.619 0.00 0.00 0.00 3.10
330 331 2.161012 TCTCGTGGCGTTACAAGTAGAG 59.839 50.000 0.00 0.00 0.00 2.43
331 332 2.095567 GTCTCGTGGCGTTACAAGTAGA 60.096 50.000 0.00 0.00 0.00 2.59
332 333 2.248487 GTCTCGTGGCGTTACAAGTAG 58.752 52.381 0.00 0.00 0.00 2.57
333 334 1.400113 CGTCTCGTGGCGTTACAAGTA 60.400 52.381 2.85 0.00 0.00 2.24
334 335 0.662374 CGTCTCGTGGCGTTACAAGT 60.662 55.000 2.85 0.00 0.00 3.16
335 336 0.662374 ACGTCTCGTGGCGTTACAAG 60.662 55.000 11.82 0.00 39.18 3.16
336 337 0.661187 GACGTCTCGTGGCGTTACAA 60.661 55.000 18.77 0.00 41.37 2.41
337 338 1.081906 GACGTCTCGTGGCGTTACA 60.082 57.895 18.77 0.00 41.37 2.41
338 339 0.792356 GAGACGTCTCGTGGCGTTAC 60.792 60.000 28.46 11.61 41.37 2.50
339 340 1.499056 GAGACGTCTCGTGGCGTTA 59.501 57.895 28.46 0.00 41.37 3.18
340 341 2.254651 GAGACGTCTCGTGGCGTT 59.745 61.111 28.46 8.60 41.37 4.84
353 354 8.952278 AGGTATATATTGATTCTGACGAGAGAC 58.048 37.037 0.00 0.00 0.00 3.36
354 355 8.951243 CAGGTATATATTGATTCTGACGAGAGA 58.049 37.037 0.00 0.00 0.00 3.10
355 356 7.700234 GCAGGTATATATTGATTCTGACGAGAG 59.300 40.741 0.00 0.00 0.00 3.20
356 357 7.539436 GCAGGTATATATTGATTCTGACGAGA 58.461 38.462 0.00 0.00 0.00 4.04
357 358 6.470556 CGCAGGTATATATTGATTCTGACGAG 59.529 42.308 0.00 0.00 0.00 4.18
358 359 6.322491 CGCAGGTATATATTGATTCTGACGA 58.678 40.000 0.00 0.00 0.00 4.20
359 360 6.560493 CGCAGGTATATATTGATTCTGACG 57.440 41.667 0.00 0.00 0.00 4.35
378 379 1.068753 CATACAGGGAGAGCCGCAG 59.931 63.158 0.00 0.00 33.83 5.18
379 380 0.975556 TTCATACAGGGAGAGCCGCA 60.976 55.000 0.00 0.00 33.83 5.69
380 381 0.249657 CTTCATACAGGGAGAGCCGC 60.250 60.000 0.00 0.00 33.83 6.53
381 382 1.339610 CTCTTCATACAGGGAGAGCCG 59.660 57.143 0.00 0.00 33.83 5.52
382 383 2.393646 ACTCTTCATACAGGGAGAGCC 58.606 52.381 0.00 0.00 0.00 4.70
383 384 3.572255 CCTACTCTTCATACAGGGAGAGC 59.428 52.174 0.00 0.00 0.00 4.09
384 385 5.055265 TCCTACTCTTCATACAGGGAGAG 57.945 47.826 0.00 0.00 0.00 3.20
385 386 5.202004 GTTCCTACTCTTCATACAGGGAGA 58.798 45.833 0.00 0.00 0.00 3.71
386 387 4.036971 CGTTCCTACTCTTCATACAGGGAG 59.963 50.000 0.00 0.00 0.00 4.30
387 388 3.952323 CGTTCCTACTCTTCATACAGGGA 59.048 47.826 0.00 0.00 0.00 4.20
388 389 3.491104 GCGTTCCTACTCTTCATACAGGG 60.491 52.174 0.00 0.00 0.00 4.45
389 390 3.381908 AGCGTTCCTACTCTTCATACAGG 59.618 47.826 0.00 0.00 0.00 4.00
390 391 4.640789 AGCGTTCCTACTCTTCATACAG 57.359 45.455 0.00 0.00 0.00 2.74
391 392 4.142227 GGAAGCGTTCCTACTCTTCATACA 60.142 45.833 9.42 0.00 44.26 2.29
392 393 4.361420 GGAAGCGTTCCTACTCTTCATAC 58.639 47.826 9.42 0.00 44.26 2.39
393 394 4.650754 GGAAGCGTTCCTACTCTTCATA 57.349 45.455 9.42 0.00 44.26 2.15
394 395 3.528597 GGAAGCGTTCCTACTCTTCAT 57.471 47.619 9.42 0.00 44.26 2.57
405 406 3.487544 GCCTGTGAAATATGGAAGCGTTC 60.488 47.826 0.00 0.00 0.00 3.95
406 407 2.423538 GCCTGTGAAATATGGAAGCGTT 59.576 45.455 0.00 0.00 0.00 4.84
407 408 2.017049 GCCTGTGAAATATGGAAGCGT 58.983 47.619 0.00 0.00 0.00 5.07
408 409 1.334869 GGCCTGTGAAATATGGAAGCG 59.665 52.381 0.00 0.00 0.00 4.68
409 410 1.334869 CGGCCTGTGAAATATGGAAGC 59.665 52.381 0.00 0.00 0.00 3.86
410 411 2.643551 ACGGCCTGTGAAATATGGAAG 58.356 47.619 0.00 0.00 0.00 3.46
411 412 2.799126 ACGGCCTGTGAAATATGGAA 57.201 45.000 0.00 0.00 0.00 3.53
412 413 3.738982 CATACGGCCTGTGAAATATGGA 58.261 45.455 0.00 0.00 0.00 3.41
413 414 2.226437 GCATACGGCCTGTGAAATATGG 59.774 50.000 0.00 0.00 36.11 2.74
414 415 2.877786 TGCATACGGCCTGTGAAATATG 59.122 45.455 0.00 2.45 43.89 1.78
415 416 3.207265 TGCATACGGCCTGTGAAATAT 57.793 42.857 0.00 0.00 43.89 1.28
416 417 2.700722 TGCATACGGCCTGTGAAATA 57.299 45.000 0.00 0.00 43.89 1.40
417 418 1.949525 GATGCATACGGCCTGTGAAAT 59.050 47.619 0.00 0.00 43.89 2.17
418 419 1.065491 AGATGCATACGGCCTGTGAAA 60.065 47.619 0.00 0.00 43.89 2.69
419 420 0.541392 AGATGCATACGGCCTGTGAA 59.459 50.000 0.00 0.00 43.89 3.18
420 421 0.541392 AAGATGCATACGGCCTGTGA 59.459 50.000 0.00 0.00 43.89 3.58
421 422 1.382522 AAAGATGCATACGGCCTGTG 58.617 50.000 0.00 0.00 43.89 3.66
422 423 2.128771 AAAAGATGCATACGGCCTGT 57.871 45.000 0.00 2.95 43.89 4.00
423 424 2.423185 TCAAAAAGATGCATACGGCCTG 59.577 45.455 0.00 0.00 43.89 4.85
424 425 2.722094 TCAAAAAGATGCATACGGCCT 58.278 42.857 0.00 0.00 43.89 5.19
425 426 3.715628 ATCAAAAAGATGCATACGGCC 57.284 42.857 0.00 0.00 43.89 6.13
426 427 4.671377 TGAATCAAAAAGATGCATACGGC 58.329 39.130 0.00 0.00 37.37 5.68
427 428 6.122850 TCTGAATCAAAAAGATGCATACGG 57.877 37.500 0.00 0.00 41.54 4.02
428 429 6.197276 CCTCTGAATCAAAAAGATGCATACG 58.803 40.000 0.00 0.00 41.54 3.06
429 430 5.975939 GCCTCTGAATCAAAAAGATGCATAC 59.024 40.000 0.00 0.00 41.54 2.39
430 431 5.068198 GGCCTCTGAATCAAAAAGATGCATA 59.932 40.000 0.00 0.00 41.54 3.14
431 432 4.142004 GGCCTCTGAATCAAAAAGATGCAT 60.142 41.667 0.00 0.00 41.54 3.96
432 433 3.194116 GGCCTCTGAATCAAAAAGATGCA 59.806 43.478 0.00 0.00 40.11 3.96
433 434 3.733077 CGGCCTCTGAATCAAAAAGATGC 60.733 47.826 0.00 0.00 36.96 3.91
434 435 3.181493 CCGGCCTCTGAATCAAAAAGATG 60.181 47.826 0.00 0.00 36.96 2.90
435 436 3.019564 CCGGCCTCTGAATCAAAAAGAT 58.980 45.455 0.00 0.00 39.09 2.40
436 437 2.436417 CCGGCCTCTGAATCAAAAAGA 58.564 47.619 0.00 0.00 0.00 2.52
437 438 1.474077 CCCGGCCTCTGAATCAAAAAG 59.526 52.381 0.00 0.00 0.00 2.27
438 439 1.544724 CCCGGCCTCTGAATCAAAAA 58.455 50.000 0.00 0.00 0.00 1.94
439 440 0.323360 CCCCGGCCTCTGAATCAAAA 60.323 55.000 0.00 0.00 0.00 2.44
440 441 1.204786 TCCCCGGCCTCTGAATCAAA 61.205 55.000 0.00 0.00 0.00 2.69
441 442 1.615124 TCCCCGGCCTCTGAATCAA 60.615 57.895 0.00 0.00 0.00 2.57
442 443 2.040442 TCCCCGGCCTCTGAATCA 59.960 61.111 0.00 0.00 0.00 2.57
443 444 2.034048 GACTCCCCGGCCTCTGAATC 62.034 65.000 0.00 0.00 0.00 2.52
444 445 2.041265 ACTCCCCGGCCTCTGAAT 59.959 61.111 0.00 0.00 0.00 2.57
445 446 2.683933 GACTCCCCGGCCTCTGAA 60.684 66.667 0.00 0.00 0.00 3.02
446 447 4.779733 GGACTCCCCGGCCTCTGA 62.780 72.222 0.00 0.00 0.00 3.27
478 479 0.853530 ACTCTGGCCTCTGGGTTTTT 59.146 50.000 3.32 0.00 34.45 1.94
479 480 0.853530 AACTCTGGCCTCTGGGTTTT 59.146 50.000 3.32 0.00 32.61 2.43
480 481 1.742308 TAACTCTGGCCTCTGGGTTT 58.258 50.000 12.90 0.00 36.93 3.27
481 482 1.561542 CATAACTCTGGCCTCTGGGTT 59.438 52.381 3.32 9.31 38.71 4.11
482 483 1.207791 CATAACTCTGGCCTCTGGGT 58.792 55.000 3.32 0.00 34.45 4.51
483 484 0.179034 GCATAACTCTGGCCTCTGGG 60.179 60.000 3.32 0.00 0.00 4.45
484 485 0.835941 AGCATAACTCTGGCCTCTGG 59.164 55.000 3.32 0.00 0.00 3.86
485 486 2.706339 AAGCATAACTCTGGCCTCTG 57.294 50.000 3.32 0.00 0.00 3.35
486 487 3.326297 GGATAAGCATAACTCTGGCCTCT 59.674 47.826 3.32 0.00 0.00 3.69
487 488 3.669536 GGATAAGCATAACTCTGGCCTC 58.330 50.000 3.32 0.00 0.00 4.70
488 489 2.037772 CGGATAAGCATAACTCTGGCCT 59.962 50.000 3.32 0.00 0.00 5.19
489 490 2.037251 TCGGATAAGCATAACTCTGGCC 59.963 50.000 0.00 0.00 0.00 5.36
490 491 3.386768 TCGGATAAGCATAACTCTGGC 57.613 47.619 0.00 0.00 0.00 4.85
491 492 5.139435 TCATCGGATAAGCATAACTCTGG 57.861 43.478 0.00 0.00 0.00 3.86
492 493 6.309980 GTGATCATCGGATAAGCATAACTCTG 59.690 42.308 0.00 0.00 32.67 3.35
532 533 0.663269 CGAAGTGCACACGCTACAGA 60.663 55.000 21.04 0.00 39.64 3.41
573 574 4.459337 AGGACTAAAAACATGGCAGCTTAC 59.541 41.667 0.00 0.00 0.00 2.34
592 593 1.534729 AAAGAATTGGGTGCGAGGAC 58.465 50.000 0.00 0.00 0.00 3.85
671 672 2.223456 TGCACACAGTTCGAACCAAATG 60.223 45.455 24.22 17.64 0.00 2.32
750 751 0.888619 CCCTGTCGCACACTCTAGAA 59.111 55.000 0.00 0.00 0.00 2.10
842 844 8.264347 TCCATAGAATGTTATTTGCTCACTACA 58.736 33.333 0.00 0.00 0.00 2.74
933 935 1.890041 TTTGTTGACGGGTGAGGCG 60.890 57.895 0.00 0.00 0.00 5.52
1110 1112 1.114627 TCAGCCTCTCGTGCATGTAT 58.885 50.000 5.68 0.00 0.00 2.29
1170 1172 4.295119 AAGTTGTCGCCGCCGAGT 62.295 61.111 0.00 0.00 45.38 4.18
1443 1445 2.173669 CATGAAGCTGTACCCGCGG 61.174 63.158 21.04 21.04 0.00 6.46
1473 1475 4.411927 ACTTATCGGGTATGCTCATCTCT 58.588 43.478 0.00 0.00 0.00 3.10
1483 1485 6.359804 TGTAGACACTGTACTTATCGGGTAT 58.640 40.000 0.00 0.00 0.00 2.73
1522 1524 1.009389 CGGTCCGAGCTGAGTTGAAC 61.009 60.000 4.91 0.00 0.00 3.18
1672 1674 2.201921 TATTAACTTGGGCCGCAACA 57.798 45.000 0.00 0.00 0.00 3.33
1847 2446 2.469952 ACATGCATTTTATGGTGGGCT 58.530 42.857 0.00 0.00 0.00 5.19
1929 2807 3.727970 GCAGGTAAATCACAAGCTAACGC 60.728 47.826 0.00 0.00 0.00 4.84
2013 2919 6.114187 TGTACTCACCAAACTTCTGATCAT 57.886 37.500 0.00 0.00 0.00 2.45
2014 2920 5.545063 TGTACTCACCAAACTTCTGATCA 57.455 39.130 0.00 0.00 0.00 2.92
2018 2924 9.398170 CATTTTAATGTACTCACCAAACTTCTG 57.602 33.333 0.00 0.00 0.00 3.02
2027 2933 9.705290 AACCAATTTCATTTTAATGTACTCACC 57.295 29.630 2.66 0.00 37.65 4.02
2074 2980 9.807921 AAACTTCCCCGTATAATAATCAATCAT 57.192 29.630 0.00 0.00 0.00 2.45
2098 3008 0.631753 TCACCACCCCTTTGTCCAAA 59.368 50.000 0.00 0.00 0.00 3.28
2105 3015 2.158460 CCTTTCTTCTCACCACCCCTTT 60.158 50.000 0.00 0.00 0.00 3.11
2117 3027 3.753797 GGTTCTCATTTCGCCTTTCTTCT 59.246 43.478 0.00 0.00 0.00 2.85
2158 3070 4.968626 CAACGCACTTGCATTGTTCTATA 58.031 39.130 1.89 0.00 39.14 1.31
2159 3071 3.825308 CAACGCACTTGCATTGTTCTAT 58.175 40.909 1.89 0.00 39.14 1.98
2171 3365 1.904287 TATCCCTTTGCAACGCACTT 58.096 45.000 0.00 0.00 38.71 3.16
2172 3366 2.128771 ATATCCCTTTGCAACGCACT 57.871 45.000 0.00 0.00 38.71 4.40
2194 3388 9.890629 AAATCACAAGCTGATGTACTAGAATAA 57.109 29.630 0.00 0.00 38.82 1.40
2208 3402 5.633830 ATTGACAGGTAAATCACAAGCTG 57.366 39.130 0.00 0.34 44.72 4.24
2395 3594 7.741554 AGAATGTAAGGTTCCTGTTATCTCT 57.258 36.000 0.00 0.00 0.00 3.10
2397 3596 9.588096 AAAAAGAATGTAAGGTTCCTGTTATCT 57.412 29.630 0.00 0.00 0.00 1.98
2481 3693 5.012239 GGTGGCATATGTGGTGATATGAAT 58.988 41.667 4.29 0.00 38.20 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.