Multiple sequence alignment - TraesCS4D01G359200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G359200 chr4D 100.000 3900 0 0 1 3900 506719112 506723011 0.000000e+00 7203.0
1 TraesCS4D01G359200 chr4D 79.533 899 162 13 2014 2907 506104649 506105530 4.280000e-174 621.0
2 TraesCS4D01G359200 chr4D 85.872 453 57 6 1397 1845 506104074 506104523 3.530000e-130 475.0
3 TraesCS4D01G359200 chr4B 91.854 1780 121 9 1161 2917 664519562 664517784 0.000000e+00 2462.0
4 TraesCS4D01G359200 chr4B 85.670 321 45 1 1488 1808 661307533 661307852 1.740000e-88 337.0
5 TraesCS4D01G359200 chr4B 83.046 348 42 8 2915 3255 664517728 664517391 2.280000e-77 300.0
6 TraesCS4D01G359200 chr4B 85.789 190 24 1 952 1138 664525240 664525051 8.550000e-47 198.0
7 TraesCS4D01G359200 chr4B 80.714 140 20 2 2014 2153 661308151 661308283 6.890000e-18 102.0
8 TraesCS4D01G359200 chr5A 92.623 1098 62 5 887 1971 702982298 702983389 0.000000e+00 1561.0
9 TraesCS4D01G359200 chr5A 95.213 940 45 0 1978 2917 702983426 702984365 0.000000e+00 1487.0
10 TraesCS4D01G359200 chr5A 90.345 870 62 8 51 904 702974633 702975496 0.000000e+00 1122.0
11 TraesCS4D01G359200 chr5A 86.888 572 70 5 1239 1809 702230033 702230600 1.530000e-178 636.0
12 TraesCS4D01G359200 chr5A 92.733 344 17 7 3467 3805 702984776 702985116 1.260000e-134 490.0
13 TraesCS4D01G359200 chr5A 91.176 374 12 11 2912 3283 702984432 702984786 4.530000e-134 488.0
14 TraesCS4D01G359200 chr3B 93.617 940 60 0 1978 2917 800174876 800175815 0.000000e+00 1404.0
15 TraesCS4D01G359200 chr3B 88.665 1041 86 18 952 1971 800173808 800174837 0.000000e+00 1240.0
16 TraesCS4D01G359200 chr3B 84.546 893 130 5 2019 2904 566190341 566189450 0.000000e+00 878.0
17 TraesCS4D01G359200 chr3B 85.780 654 85 6 1158 1807 566190985 566190336 0.000000e+00 686.0
18 TraesCS4D01G359200 chr3B 83.761 351 40 9 2912 3255 800175868 800176208 2.260000e-82 316.0
19 TraesCS4D01G359200 chr3B 81.633 196 27 5 655 841 579893770 579893575 1.880000e-33 154.0
20 TraesCS4D01G359200 chr3A 84.434 893 131 5 2019 2904 571809013 571808122 0.000000e+00 872.0
21 TraesCS4D01G359200 chr3A 83.203 893 142 5 2019 2904 571912688 571911797 0.000000e+00 811.0
22 TraesCS4D01G359200 chr3A 84.557 654 90 8 1158 1807 571913329 571912683 4.250000e-179 638.0
23 TraesCS4D01G359200 chr3A 83.258 663 91 9 1158 1807 571809663 571809008 9.330000e-166 593.0
24 TraesCS4D01G359200 chr3A 89.241 158 9 5 3309 3466 666119297 666119446 1.430000e-44 191.0
25 TraesCS4D01G359200 chr3A 85.246 122 17 1 39 160 110005716 110005596 1.470000e-24 124.0
26 TraesCS4D01G359200 chr3A 82.258 124 22 0 46 169 485685240 485685117 1.480000e-19 108.0
27 TraesCS4D01G359200 chr3D 87.013 308 35 4 1241 1546 433427176 433426872 3.730000e-90 342.0
28 TraesCS4D01G359200 chr1A 86.755 151 18 2 688 836 108074912 108075062 2.410000e-37 167.0
29 TraesCS4D01G359200 chr1A 87.013 77 10 0 3824 3900 1497501 1497577 1.930000e-13 87.9
30 TraesCS4D01G359200 chr2B 86.885 122 16 0 39 160 679392428 679392307 1.890000e-28 137.0
31 TraesCS4D01G359200 chr2B 88.889 81 7 2 759 838 668678790 668678711 8.920000e-17 99.0
32 TraesCS4D01G359200 chr2B 89.474 76 8 0 3825 3900 416531194 416531269 3.210000e-16 97.1
33 TraesCS4D01G359200 chr2B 79.231 130 21 5 242 368 308726820 308726694 6.940000e-13 86.1
34 TraesCS4D01G359200 chrUn 86.957 115 15 0 46 160 439165545 439165431 3.160000e-26 130.0
35 TraesCS4D01G359200 chrUn 86.087 115 16 0 46 160 308283140 308283026 1.470000e-24 124.0
36 TraesCS4D01G359200 chrUn 86.087 115 16 0 46 160 361187695 361187581 1.470000e-24 124.0
37 TraesCS4D01G359200 chr1B 84.677 124 19 0 46 169 559095567 559095444 1.470000e-24 124.0
38 TraesCS4D01G359200 chr1B 89.189 74 8 0 3827 3900 205333734 205333807 4.150000e-15 93.5
39 TraesCS4D01G359200 chr1B 77.273 154 26 7 700 848 132532643 132532792 8.980000e-12 82.4
40 TraesCS4D01G359200 chr7D 80.435 138 26 1 694 830 393115583 393115446 1.920000e-18 104.0
41 TraesCS4D01G359200 chr7D 80.620 129 22 3 27 154 412759676 412759802 3.210000e-16 97.1
42 TraesCS4D01G359200 chr7D 82.500 80 10 3 315 392 21086977 21087054 2.510000e-07 67.6
43 TraesCS4D01G359200 chr7A 80.142 141 21 4 696 830 445648676 445648537 8.920000e-17 99.0
44 TraesCS4D01G359200 chr7A 89.189 74 8 0 3827 3900 559213385 559213312 4.150000e-15 93.5
45 TraesCS4D01G359200 chr2D 90.541 74 7 0 3827 3900 395063257 395063184 8.920000e-17 99.0
46 TraesCS4D01G359200 chr2D 80.769 104 18 2 334 436 486256370 486256472 3.230000e-11 80.5
47 TraesCS4D01G359200 chr2A 89.189 74 8 0 3827 3900 350328117 350328190 4.150000e-15 93.5
48 TraesCS4D01G359200 chr2A 86.667 75 9 1 3827 3900 754444040 754444114 8.980000e-12 82.4
49 TraesCS4D01G359200 chr1D 89.189 74 8 0 3827 3900 319656020 319655947 4.150000e-15 93.5
50 TraesCS4D01G359200 chr7B 83.178 107 9 6 694 799 72757221 72757123 5.370000e-14 89.8
51 TraesCS4D01G359200 chr7B 79.412 102 13 8 688 789 736785396 736785489 9.040000e-07 65.8
52 TraesCS4D01G359200 chr4A 87.671 73 9 0 3827 3899 215953306 215953234 6.940000e-13 86.1
53 TraesCS4D01G359200 chr4A 76.316 152 25 9 702 847 743396457 743396603 1.940000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G359200 chr4D 506719112 506723011 3899 False 7203.000000 7203 100.00000 1 3900 1 chr4D.!!$F1 3899
1 TraesCS4D01G359200 chr4D 506104074 506105530 1456 False 548.000000 621 82.70250 1397 2907 2 chr4D.!!$F2 1510
2 TraesCS4D01G359200 chr4B 664517391 664519562 2171 True 1381.000000 2462 87.45000 1161 3255 2 chr4B.!!$R2 2094
3 TraesCS4D01G359200 chr4B 661307533 661308283 750 False 219.500000 337 83.19200 1488 2153 2 chr4B.!!$F1 665
4 TraesCS4D01G359200 chr5A 702974633 702975496 863 False 1122.000000 1122 90.34500 51 904 1 chr5A.!!$F2 853
5 TraesCS4D01G359200 chr5A 702982298 702985116 2818 False 1006.500000 1561 92.93625 887 3805 4 chr5A.!!$F3 2918
6 TraesCS4D01G359200 chr5A 702230033 702230600 567 False 636.000000 636 86.88800 1239 1809 1 chr5A.!!$F1 570
7 TraesCS4D01G359200 chr3B 800173808 800176208 2400 False 986.666667 1404 88.68100 952 3255 3 chr3B.!!$F1 2303
8 TraesCS4D01G359200 chr3B 566189450 566190985 1535 True 782.000000 878 85.16300 1158 2904 2 chr3B.!!$R2 1746
9 TraesCS4D01G359200 chr3A 571808122 571809663 1541 True 732.500000 872 83.84600 1158 2904 2 chr3A.!!$R3 1746
10 TraesCS4D01G359200 chr3A 571911797 571913329 1532 True 724.500000 811 83.88000 1158 2904 2 chr3A.!!$R4 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 962 0.601311 GTCTGAGTTCGCCTGTGCTT 60.601 55.0 0.0 0.0 34.43 3.91 F
2196 2559 0.102663 GGAACCTACTACTCAGCCGC 59.897 60.0 0.0 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2642 3014 0.821517 TCCATGGCGTTCACGTAGAT 59.178 50.0 6.96 0.0 42.22 1.98 R
3328 3781 0.034863 GGGGCGAATGTGGTTTAGGA 60.035 55.0 0.00 0.0 0.00 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.915293 TTTGATAACCACAGAAATATGACGT 57.085 32.000 0.00 0.00 0.00 4.34
26 27 9.607988 TTTGATAACCACAGAAATATGACGTAT 57.392 29.630 0.00 0.00 0.00 3.06
27 28 9.607988 TTGATAACCACAGAAATATGACGTATT 57.392 29.630 0.00 0.00 34.46 1.89
28 29 9.040939 TGATAACCACAGAAATATGACGTATTG 57.959 33.333 0.61 0.00 33.32 1.90
29 30 5.734855 ACCACAGAAATATGACGTATTGC 57.265 39.130 0.61 0.00 33.32 3.56
30 31 5.428253 ACCACAGAAATATGACGTATTGCT 58.572 37.500 2.40 2.40 38.93 3.91
31 32 5.880332 ACCACAGAAATATGACGTATTGCTT 59.120 36.000 5.28 0.00 36.66 3.91
32 33 6.037172 ACCACAGAAATATGACGTATTGCTTC 59.963 38.462 5.28 0.00 36.66 3.86
33 34 6.037062 CCACAGAAATATGACGTATTGCTTCA 59.963 38.462 5.28 0.00 36.66 3.02
34 35 7.254898 CCACAGAAATATGACGTATTGCTTCAT 60.255 37.037 5.28 0.00 36.66 2.57
35 36 7.585210 CACAGAAATATGACGTATTGCTTCATG 59.415 37.037 5.28 2.20 36.66 3.07
36 37 7.073883 CAGAAATATGACGTATTGCTTCATGG 58.926 38.462 5.28 0.00 36.66 3.66
37 38 5.362556 AATATGACGTATTGCTTCATGGC 57.637 39.130 4.36 0.00 36.82 4.40
38 39 2.401583 TGACGTATTGCTTCATGGCT 57.598 45.000 0.00 0.00 0.00 4.75
39 40 3.535280 TGACGTATTGCTTCATGGCTA 57.465 42.857 0.00 0.00 0.00 3.93
40 41 4.071961 TGACGTATTGCTTCATGGCTAT 57.928 40.909 0.00 0.00 0.00 2.97
41 42 4.450976 TGACGTATTGCTTCATGGCTATT 58.549 39.130 0.00 0.00 0.00 1.73
42 43 5.606505 TGACGTATTGCTTCATGGCTATTA 58.393 37.500 0.00 0.00 0.00 0.98
43 44 5.465390 TGACGTATTGCTTCATGGCTATTAC 59.535 40.000 0.00 0.00 0.00 1.89
44 45 5.364778 ACGTATTGCTTCATGGCTATTACA 58.635 37.500 0.00 0.00 0.00 2.41
45 46 5.997746 ACGTATTGCTTCATGGCTATTACAT 59.002 36.000 0.00 0.00 0.00 2.29
46 47 6.147821 ACGTATTGCTTCATGGCTATTACATC 59.852 38.462 0.00 0.00 0.00 3.06
47 48 5.972107 ATTGCTTCATGGCTATTACATCC 57.028 39.130 0.00 0.00 0.00 3.51
48 49 4.436113 TGCTTCATGGCTATTACATCCA 57.564 40.909 0.00 0.00 0.00 3.41
49 50 4.989277 TGCTTCATGGCTATTACATCCAT 58.011 39.130 0.00 0.00 40.98 3.41
50 51 5.005740 TGCTTCATGGCTATTACATCCATC 58.994 41.667 0.00 0.00 38.46 3.51
51 52 4.397417 GCTTCATGGCTATTACATCCATCC 59.603 45.833 0.00 0.00 38.46 3.51
52 53 4.574674 TCATGGCTATTACATCCATCCC 57.425 45.455 0.00 0.00 38.46 3.85
53 54 3.915711 TCATGGCTATTACATCCATCCCA 59.084 43.478 0.00 0.00 38.46 4.37
54 55 4.353489 TCATGGCTATTACATCCATCCCAA 59.647 41.667 0.00 0.00 38.46 4.12
55 56 4.805140 TGGCTATTACATCCATCCCAAA 57.195 40.909 0.00 0.00 0.00 3.28
156 157 9.860898 AAATGTAAGACAAGAATTTTAGGATGC 57.139 29.630 0.00 0.00 0.00 3.91
161 162 5.416952 AGACAAGAATTTTAGGATGCAGGTG 59.583 40.000 0.00 0.00 0.00 4.00
185 186 8.635328 GTGGTATTATTTAAGGGGGTTTACATG 58.365 37.037 0.00 0.00 0.00 3.21
286 288 3.562973 ACTCATCCTTATGAATGCTTGCG 59.437 43.478 0.00 0.00 41.57 4.85
305 307 1.859080 CGCGCAAACCTTACTCCTATC 59.141 52.381 8.75 0.00 0.00 2.08
308 310 2.866762 CGCAAACCTTACTCCTATCAGC 59.133 50.000 0.00 0.00 0.00 4.26
309 311 2.866762 GCAAACCTTACTCCTATCAGCG 59.133 50.000 0.00 0.00 0.00 5.18
313 315 3.215975 ACCTTACTCCTATCAGCGTCTC 58.784 50.000 0.00 0.00 0.00 3.36
314 316 2.554893 CCTTACTCCTATCAGCGTCTCC 59.445 54.545 0.00 0.00 0.00 3.71
323 325 1.996292 TCAGCGTCTCCGAAAGATTG 58.004 50.000 0.00 0.00 36.11 2.67
336 338 4.334759 CCGAAAGATTGAGCTGACATCATT 59.665 41.667 0.00 0.00 0.00 2.57
360 362 7.439157 TTTAAGATTGATGAAGTCACCACAG 57.561 36.000 0.00 0.00 36.32 3.66
391 393 1.467713 GGTCGACGACAATGTCTCCTC 60.468 57.143 27.77 4.22 36.71 3.71
408 410 2.306805 TCCTCCACTGAACAAGCATCAT 59.693 45.455 0.00 0.00 0.00 2.45
467 469 5.183713 CACCAATGCCAAGTCTAGAATTCAA 59.816 40.000 8.44 0.00 0.00 2.69
553 555 3.259064 GCTGCTTAGTTACATGACCGAA 58.741 45.455 0.00 0.00 0.00 4.30
560 562 7.931407 TGCTTAGTTACATGACCGAATCAATAT 59.069 33.333 0.00 0.00 41.93 1.28
636 638 5.698545 ACACGTATATACTACCTCCGTTCTC 59.301 44.000 11.05 0.00 0.00 2.87
637 639 5.698089 CACGTATATACTACCTCCGTTCTCA 59.302 44.000 11.05 0.00 0.00 3.27
648 650 6.057321 ACCTCCGTTCTCATTTATTGGTTA 57.943 37.500 0.00 0.00 0.00 2.85
662 664 9.347934 CATTTATTGGTTAACTCGTATTTTGCA 57.652 29.630 5.42 0.00 0.00 4.08
668 670 7.354257 TGGTTAACTCGTATTTTGCACTAAAC 58.646 34.615 5.42 0.00 0.00 2.01
677 679 7.801315 TCGTATTTTGCACTAAACTTTGATCAC 59.199 33.333 0.00 0.00 0.00 3.06
754 767 9.683069 GAACATAGTTTCTGATGATGTTGTTTT 57.317 29.630 3.45 0.00 40.03 2.43
756 769 9.467258 ACATAGTTTCTGATGATGTTGTTTTTG 57.533 29.630 0.00 0.00 0.00 2.44
802 815 8.641498 ATTAGTGAAAATCCTGATCAAAGTGT 57.359 30.769 0.00 0.00 0.00 3.55
807 820 2.859165 TCCTGATCAAAGTGTGACCC 57.141 50.000 0.00 0.00 39.72 4.46
814 827 6.316390 CCTGATCAAAGTGTGACCCTAAATAC 59.684 42.308 0.00 0.00 39.72 1.89
816 829 4.571919 TCAAAGTGTGACCCTAAATACGG 58.428 43.478 0.00 0.00 0.00 4.02
916 930 5.591877 AGTCAGCAAATGAATAGACATTCCC 59.408 40.000 0.00 0.00 40.43 3.97
929 943 9.586435 GAATAGACATTCCCAAACTATTTTTGG 57.414 33.333 8.55 8.55 46.41 3.28
948 962 0.601311 GTCTGAGTTCGCCTGTGCTT 60.601 55.000 0.00 0.00 34.43 3.91
1153 1195 3.736252 GCCATACATAGCGTCACTTACTG 59.264 47.826 0.00 0.00 0.00 2.74
1291 1339 2.582498 CGTCGTCGGAGCCAATCC 60.582 66.667 0.00 0.00 45.64 3.01
1368 1416 2.808206 GGGGGAGGAGTACATGGCG 61.808 68.421 0.00 0.00 0.00 5.69
1425 1473 2.029073 CACACTGACCCGCGAAGT 59.971 61.111 8.23 4.06 0.00 3.01
1698 1749 2.874664 CGACCCTGTTCGGAACCCA 61.875 63.158 17.62 0.00 35.26 4.51
1705 1765 1.527380 GTTCGGAACCCAAGGCACA 60.527 57.895 9.75 0.00 0.00 4.57
1706 1766 1.228124 TTCGGAACCCAAGGCACAG 60.228 57.895 0.00 0.00 0.00 3.66
1728 1788 1.152312 ACCCAGTCTCGTGGACCTT 60.152 57.895 7.45 0.00 45.54 3.50
1845 2108 8.501580 ACGCTACTACCTTTTATTTTTGAACTC 58.498 33.333 0.00 0.00 0.00 3.01
1873 2136 7.095187 CCTTTAGCGGAATATTTTCGAGCTTAT 60.095 37.037 17.44 3.21 40.97 1.73
1879 2142 8.068380 GCGGAATATTTTCGAGCTTATTTAGTT 58.932 33.333 13.81 0.00 34.99 2.24
1888 2151 4.740695 CGAGCTTATTTAGTTCTTCCTCCG 59.259 45.833 0.00 0.00 32.37 4.63
1891 2154 4.503370 GCTTATTTAGTTCTTCCTCCGTCG 59.497 45.833 0.00 0.00 0.00 5.12
1928 2191 5.463724 GGCTCAAAAAGATGTATCTAGACGG 59.536 44.000 0.00 0.00 35.76 4.79
1929 2192 6.043411 GCTCAAAAAGATGTATCTAGACGGT 58.957 40.000 0.00 0.00 35.76 4.83
1941 2204 8.297470 TGTATCTAGACGGTTTTTAGTGGTAT 57.703 34.615 0.00 0.00 0.00 2.73
1973 2236 6.197788 GTTTGAACGGCAAGTAATTTCTTG 57.802 37.500 17.74 17.74 45.09 3.02
1974 2237 5.508200 TTGAACGGCAAGTAATTTCTTGT 57.492 34.783 21.42 6.13 44.41 3.16
1975 2238 4.854399 TGAACGGCAAGTAATTTCTTGTG 58.146 39.130 21.42 17.20 44.41 3.33
1976 2239 3.915437 ACGGCAAGTAATTTCTTGTGG 57.085 42.857 21.42 16.51 44.41 4.17
2196 2559 0.102663 GGAACCTACTACTCAGCCGC 59.897 60.000 0.00 0.00 0.00 6.53
2257 2620 4.415150 CTGTGGGAGGCATGGCGT 62.415 66.667 14.30 2.04 0.00 5.68
2351 2714 1.554160 TCTTCTACGACGAGGAGTCCT 59.446 52.381 12.85 12.85 46.92 3.85
2398 2761 1.534729 TGCTCGACACAGAGAAGCTA 58.465 50.000 0.00 0.00 40.57 3.32
2416 2779 3.259876 AGCTACGGTACAAGTTTGATGGA 59.740 43.478 0.00 0.00 0.00 3.41
2456 2819 1.599797 GCACGCCCACCTACAACTT 60.600 57.895 0.00 0.00 0.00 2.66
2464 2827 2.946990 CCCACCTACAACTTCAAACGTT 59.053 45.455 0.00 0.00 0.00 3.99
2602 2974 0.976641 AGGAAGTGCTGGTGATCGAA 59.023 50.000 0.00 0.00 0.00 3.71
2617 2989 0.824109 TCGAAGGCATTGAGACCGAT 59.176 50.000 0.00 0.00 0.00 4.18
2642 3014 3.804036 ACAGAAATGGTCAAGTTCGACA 58.196 40.909 0.00 0.00 37.66 4.35
2804 3176 3.685139 ACGAGCTCTTGGAAGATTTGA 57.315 42.857 12.85 0.00 33.93 2.69
2956 3403 0.893270 CTGTGTGAAATTCCCCCGCA 60.893 55.000 0.00 0.00 0.00 5.69
3097 3548 0.806868 ATGCGAGCCAATGTCTGTTG 59.193 50.000 0.00 0.00 0.00 3.33
3129 3580 3.382546 ACATCCATGCTATTCAAACTGGC 59.617 43.478 0.00 0.00 0.00 4.85
3208 3661 7.394016 TCTGAAAGGAAGTGCAATGTATCTTA 58.606 34.615 0.00 0.00 0.00 2.10
3283 3736 8.809468 AAAAATTTACCCCAAAGCTAAAACAA 57.191 26.923 0.00 0.00 0.00 2.83
3284 3737 8.809468 AAAATTTACCCCAAAGCTAAAACAAA 57.191 26.923 0.00 0.00 0.00 2.83
3285 3738 8.809468 AAATTTACCCCAAAGCTAAAACAAAA 57.191 26.923 0.00 0.00 0.00 2.44
3286 3739 8.809468 AATTTACCCCAAAGCTAAAACAAAAA 57.191 26.923 0.00 0.00 0.00 1.94
3287 3740 8.988546 ATTTACCCCAAAGCTAAAACAAAAAT 57.011 26.923 0.00 0.00 0.00 1.82
3289 3742 8.890124 TTACCCCAAAGCTAAAACAAAAATAC 57.110 30.769 0.00 0.00 0.00 1.89
3290 3743 7.131907 ACCCCAAAGCTAAAACAAAAATACT 57.868 32.000 0.00 0.00 0.00 2.12
3291 3744 8.252624 ACCCCAAAGCTAAAACAAAAATACTA 57.747 30.769 0.00 0.00 0.00 1.82
3292 3745 8.145767 ACCCCAAAGCTAAAACAAAAATACTAC 58.854 33.333 0.00 0.00 0.00 2.73
3293 3746 8.364894 CCCCAAAGCTAAAACAAAAATACTACT 58.635 33.333 0.00 0.00 0.00 2.57
3294 3747 9.758651 CCCAAAGCTAAAACAAAAATACTACTT 57.241 29.630 0.00 0.00 0.00 2.24
3298 3751 9.678941 AAGCTAAAACAAAAATACTACTTCTGC 57.321 29.630 0.00 0.00 0.00 4.26
3299 3752 8.015658 AGCTAAAACAAAAATACTACTTCTGCG 58.984 33.333 0.00 0.00 0.00 5.18
3300 3753 8.013378 GCTAAAACAAAAATACTACTTCTGCGA 58.987 33.333 0.00 0.00 0.00 5.10
3301 3754 9.872757 CTAAAACAAAAATACTACTTCTGCGAA 57.127 29.630 0.00 0.00 0.00 4.70
3302 3755 8.556517 AAAACAAAAATACTACTTCTGCGAAC 57.443 30.769 0.00 0.00 0.00 3.95
3303 3756 6.854496 ACAAAAATACTACTTCTGCGAACA 57.146 33.333 0.00 0.00 0.00 3.18
3304 3757 7.254227 ACAAAAATACTACTTCTGCGAACAA 57.746 32.000 0.00 0.00 0.00 2.83
3305 3758 7.130269 ACAAAAATACTACTTCTGCGAACAAC 58.870 34.615 0.00 0.00 0.00 3.32
3306 3759 5.511088 AAATACTACTTCTGCGAACAACG 57.489 39.130 0.00 0.00 45.66 4.10
3307 3760 2.503920 ACTACTTCTGCGAACAACGT 57.496 45.000 0.00 0.00 44.60 3.99
3308 3761 2.817901 ACTACTTCTGCGAACAACGTT 58.182 42.857 0.00 0.00 44.60 3.99
3309 3762 3.968649 ACTACTTCTGCGAACAACGTTA 58.031 40.909 0.00 0.00 44.60 3.18
3310 3763 3.732721 ACTACTTCTGCGAACAACGTTAC 59.267 43.478 0.00 0.00 44.60 2.50
3311 3764 1.519758 ACTTCTGCGAACAACGTTACG 59.480 47.619 0.00 2.19 44.60 3.18
3312 3765 1.782569 CTTCTGCGAACAACGTTACGA 59.217 47.619 13.03 8.68 44.60 3.43
3313 3766 1.837648 TCTGCGAACAACGTTACGAA 58.162 45.000 13.03 12.09 44.60 3.85
3314 3767 1.782569 TCTGCGAACAACGTTACGAAG 59.217 47.619 13.03 18.86 44.60 3.79
3315 3768 0.230260 TGCGAACAACGTTACGAAGC 59.770 50.000 13.03 14.05 44.60 3.86
3316 3769 0.449993 GCGAACAACGTTACGAAGCC 60.450 55.000 13.03 0.00 44.60 4.35
3317 3770 1.134226 CGAACAACGTTACGAAGCCT 58.866 50.000 13.03 0.00 37.22 4.58
3318 3771 1.523934 CGAACAACGTTACGAAGCCTT 59.476 47.619 13.03 0.00 37.22 4.35
3319 3772 2.725723 CGAACAACGTTACGAAGCCTTA 59.274 45.455 13.03 0.00 37.22 2.69
3320 3773 3.420927 CGAACAACGTTACGAAGCCTTAC 60.421 47.826 13.03 0.00 37.22 2.34
3321 3774 2.407090 ACAACGTTACGAAGCCTTACC 58.593 47.619 13.03 0.00 0.00 2.85
3322 3775 2.036346 ACAACGTTACGAAGCCTTACCT 59.964 45.455 13.03 0.00 0.00 3.08
3323 3776 3.255642 ACAACGTTACGAAGCCTTACCTA 59.744 43.478 13.03 0.00 0.00 3.08
3324 3777 4.236935 CAACGTTACGAAGCCTTACCTAA 58.763 43.478 13.03 0.00 0.00 2.69
3325 3778 4.725790 ACGTTACGAAGCCTTACCTAAT 57.274 40.909 13.03 0.00 0.00 1.73
3326 3779 5.077134 ACGTTACGAAGCCTTACCTAATT 57.923 39.130 13.03 0.00 0.00 1.40
3327 3780 5.482006 ACGTTACGAAGCCTTACCTAATTT 58.518 37.500 13.03 0.00 0.00 1.82
3328 3781 5.934043 ACGTTACGAAGCCTTACCTAATTTT 59.066 36.000 13.03 0.00 0.00 1.82
3329 3782 6.091305 ACGTTACGAAGCCTTACCTAATTTTC 59.909 38.462 13.03 0.00 0.00 2.29
3330 3783 6.456047 CGTTACGAAGCCTTACCTAATTTTCC 60.456 42.308 0.00 0.00 0.00 3.13
3331 3784 5.175388 ACGAAGCCTTACCTAATTTTCCT 57.825 39.130 0.00 0.00 0.00 3.36
3332 3785 6.303903 ACGAAGCCTTACCTAATTTTCCTA 57.696 37.500 0.00 0.00 0.00 2.94
3333 3786 6.714278 ACGAAGCCTTACCTAATTTTCCTAA 58.286 36.000 0.00 0.00 0.00 2.69
3334 3787 7.170277 ACGAAGCCTTACCTAATTTTCCTAAA 58.830 34.615 0.00 0.00 0.00 1.85
3335 3788 7.120285 ACGAAGCCTTACCTAATTTTCCTAAAC 59.880 37.037 0.00 0.00 0.00 2.01
3336 3789 7.414873 CGAAGCCTTACCTAATTTTCCTAAACC 60.415 40.741 0.00 0.00 0.00 3.27
3337 3790 6.796648 AGCCTTACCTAATTTTCCTAAACCA 58.203 36.000 0.00 0.00 0.00 3.67
3338 3791 6.662234 AGCCTTACCTAATTTTCCTAAACCAC 59.338 38.462 0.00 0.00 0.00 4.16
3339 3792 6.434965 GCCTTACCTAATTTTCCTAAACCACA 59.565 38.462 0.00 0.00 0.00 4.17
3340 3793 7.123697 GCCTTACCTAATTTTCCTAAACCACAT 59.876 37.037 0.00 0.00 0.00 3.21
3341 3794 9.031537 CCTTACCTAATTTTCCTAAACCACATT 57.968 33.333 0.00 0.00 0.00 2.71
3343 3796 7.153217 ACCTAATTTTCCTAAACCACATTCG 57.847 36.000 0.00 0.00 0.00 3.34
3344 3797 6.033966 CCTAATTTTCCTAAACCACATTCGC 58.966 40.000 0.00 0.00 0.00 4.70
3345 3798 3.926821 TTTTCCTAAACCACATTCGCC 57.073 42.857 0.00 0.00 0.00 5.54
3346 3799 1.828979 TTCCTAAACCACATTCGCCC 58.171 50.000 0.00 0.00 0.00 6.13
3347 3800 0.034863 TCCTAAACCACATTCGCCCC 60.035 55.000 0.00 0.00 0.00 5.80
3348 3801 1.035385 CCTAAACCACATTCGCCCCC 61.035 60.000 0.00 0.00 0.00 5.40
3371 3824 2.453242 CCTCCGGGATTTCTAGGGG 58.547 63.158 0.00 0.00 33.58 4.79
3372 3825 1.128188 CCTCCGGGATTTCTAGGGGG 61.128 65.000 0.00 0.00 38.17 5.40
3393 3846 4.902258 GGCCCCTCCTCCCCCTAC 62.902 77.778 0.00 0.00 0.00 3.18
3394 3847 3.780275 GCCCCTCCTCCCCCTACT 61.780 72.222 0.00 0.00 0.00 2.57
3395 3848 3.129976 CCCCTCCTCCCCCTACTT 58.870 66.667 0.00 0.00 0.00 2.24
3396 3849 1.074395 CCCCTCCTCCCCCTACTTC 60.074 68.421 0.00 0.00 0.00 3.01
3397 3850 1.074395 CCCTCCTCCCCCTACTTCC 60.074 68.421 0.00 0.00 0.00 3.46
3398 3851 1.710341 CCTCCTCCCCCTACTTCCA 59.290 63.158 0.00 0.00 0.00 3.53
3399 3852 0.044244 CCTCCTCCCCCTACTTCCAA 59.956 60.000 0.00 0.00 0.00 3.53
3400 3853 1.345526 CCTCCTCCCCCTACTTCCAAT 60.346 57.143 0.00 0.00 0.00 3.16
3401 3854 2.090153 CCTCCTCCCCCTACTTCCAATA 60.090 54.545 0.00 0.00 0.00 1.90
3402 3855 3.635267 CCTCCTCCCCCTACTTCCAATAA 60.635 52.174 0.00 0.00 0.00 1.40
3403 3856 3.390819 TCCTCCCCCTACTTCCAATAAC 58.609 50.000 0.00 0.00 0.00 1.89
3404 3857 3.120108 CCTCCCCCTACTTCCAATAACA 58.880 50.000 0.00 0.00 0.00 2.41
3405 3858 3.136626 CCTCCCCCTACTTCCAATAACAG 59.863 52.174 0.00 0.00 0.00 3.16
3406 3859 3.780850 CTCCCCCTACTTCCAATAACAGT 59.219 47.826 0.00 0.00 0.00 3.55
3407 3860 3.778629 TCCCCCTACTTCCAATAACAGTC 59.221 47.826 0.00 0.00 0.00 3.51
3408 3861 3.780850 CCCCCTACTTCCAATAACAGTCT 59.219 47.826 0.00 0.00 0.00 3.24
3409 3862 4.384208 CCCCCTACTTCCAATAACAGTCTG 60.384 50.000 0.00 0.00 0.00 3.51
3410 3863 4.192317 CCCTACTTCCAATAACAGTCTGC 58.808 47.826 0.00 0.00 0.00 4.26
3411 3864 4.192317 CCTACTTCCAATAACAGTCTGCC 58.808 47.826 0.00 0.00 0.00 4.85
3412 3865 3.788227 ACTTCCAATAACAGTCTGCCA 57.212 42.857 0.00 0.00 0.00 4.92
3413 3866 3.412386 ACTTCCAATAACAGTCTGCCAC 58.588 45.455 0.00 0.00 0.00 5.01
3414 3867 2.489938 TCCAATAACAGTCTGCCACC 57.510 50.000 0.00 0.00 0.00 4.61
3415 3868 1.985159 TCCAATAACAGTCTGCCACCT 59.015 47.619 0.00 0.00 0.00 4.00
3416 3869 2.086869 CCAATAACAGTCTGCCACCTG 58.913 52.381 0.00 0.00 34.82 4.00
3417 3870 2.086869 CAATAACAGTCTGCCACCTGG 58.913 52.381 0.00 0.00 38.53 4.45
3418 3871 1.362224 ATAACAGTCTGCCACCTGGT 58.638 50.000 0.00 0.00 37.57 4.00
3419 3872 1.136828 TAACAGTCTGCCACCTGGTT 58.863 50.000 0.00 0.00 37.57 3.67
3420 3873 0.466189 AACAGTCTGCCACCTGGTTG 60.466 55.000 0.00 0.00 37.57 3.77
3421 3874 1.149174 CAGTCTGCCACCTGGTTGT 59.851 57.895 0.00 0.00 37.57 3.32
3422 3875 0.466189 CAGTCTGCCACCTGGTTGTT 60.466 55.000 0.00 0.00 37.57 2.83
3423 3876 0.258774 AGTCTGCCACCTGGTTGTTT 59.741 50.000 0.00 0.00 37.57 2.83
3424 3877 1.493022 AGTCTGCCACCTGGTTGTTTA 59.507 47.619 0.00 0.00 37.57 2.01
3425 3878 2.108250 AGTCTGCCACCTGGTTGTTTAT 59.892 45.455 0.00 0.00 37.57 1.40
3426 3879 2.228822 GTCTGCCACCTGGTTGTTTATG 59.771 50.000 0.00 0.00 37.57 1.90
3427 3880 2.158534 TCTGCCACCTGGTTGTTTATGT 60.159 45.455 0.00 0.00 37.57 2.29
3428 3881 3.073209 TCTGCCACCTGGTTGTTTATGTA 59.927 43.478 0.00 0.00 37.57 2.29
3429 3882 3.823873 CTGCCACCTGGTTGTTTATGTAA 59.176 43.478 0.00 0.00 37.57 2.41
3430 3883 4.215908 TGCCACCTGGTTGTTTATGTAAA 58.784 39.130 0.00 0.00 37.57 2.01
3431 3884 4.649674 TGCCACCTGGTTGTTTATGTAAAA 59.350 37.500 0.00 0.00 37.57 1.52
3432 3885 4.986034 GCCACCTGGTTGTTTATGTAAAAC 59.014 41.667 0.00 0.00 37.57 2.43
3433 3886 5.221362 GCCACCTGGTTGTTTATGTAAAACT 60.221 40.000 0.00 0.00 37.57 2.66
3434 3887 6.443792 CCACCTGGTTGTTTATGTAAAACTC 58.556 40.000 0.00 0.00 0.00 3.01
3435 3888 6.039941 CCACCTGGTTGTTTATGTAAAACTCA 59.960 38.462 0.00 0.00 0.00 3.41
3436 3889 7.416890 CCACCTGGTTGTTTATGTAAAACTCAA 60.417 37.037 0.00 0.00 0.00 3.02
3437 3890 7.434013 CACCTGGTTGTTTATGTAAAACTCAAC 59.566 37.037 0.00 0.00 33.00 3.18
3438 3891 6.635239 CCTGGTTGTTTATGTAAAACTCAACG 59.365 38.462 2.67 0.00 33.81 4.10
3439 3892 7.086230 TGGTTGTTTATGTAAAACTCAACGT 57.914 32.000 2.67 0.00 33.81 3.99
3440 3893 8.206325 TGGTTGTTTATGTAAAACTCAACGTA 57.794 30.769 0.00 0.00 33.81 3.57
3441 3894 8.671921 TGGTTGTTTATGTAAAACTCAACGTAA 58.328 29.630 0.00 0.00 33.81 3.18
3443 3896 9.161684 GTTGTTTATGTAAAACTCAACGTAAGG 57.838 33.333 0.00 0.00 46.39 2.69
3444 3897 8.436046 TGTTTATGTAAAACTCAACGTAAGGT 57.564 30.769 0.00 0.00 46.39 3.50
3445 3898 8.891720 TGTTTATGTAAAACTCAACGTAAGGTT 58.108 29.630 0.00 0.00 46.39 3.50
3446 3899 9.720667 GTTTATGTAAAACTCAACGTAAGGTTT 57.279 29.630 15.65 15.65 46.39 3.27
3449 3902 8.667076 ATGTAAAACTCAACGTAAGGTTTAGT 57.333 30.769 17.00 9.44 43.21 2.24
3450 3903 9.762933 ATGTAAAACTCAACGTAAGGTTTAGTA 57.237 29.630 17.00 11.75 41.12 1.82
3451 3904 9.248291 TGTAAAACTCAACGTAAGGTTTAGTAG 57.752 33.333 17.00 0.00 41.12 2.57
3452 3905 9.463443 GTAAAACTCAACGTAAGGTTTAGTAGA 57.537 33.333 17.00 0.81 41.12 2.59
3454 3907 8.530269 AAACTCAACGTAAGGTTTAGTAGATG 57.470 34.615 9.77 0.00 41.12 2.90
3455 3908 7.224522 ACTCAACGTAAGGTTTAGTAGATGT 57.775 36.000 0.00 0.00 40.41 3.06
3456 3909 8.340618 ACTCAACGTAAGGTTTAGTAGATGTA 57.659 34.615 0.00 0.00 40.41 2.29
3457 3910 8.796475 ACTCAACGTAAGGTTTAGTAGATGTAA 58.204 33.333 0.00 0.00 40.41 2.41
3458 3911 8.970691 TCAACGTAAGGTTTAGTAGATGTAAC 57.029 34.615 0.00 0.00 46.39 2.50
3459 3912 8.575589 TCAACGTAAGGTTTAGTAGATGTAACA 58.424 33.333 0.00 0.00 46.39 2.41
3460 3913 9.362539 CAACGTAAGGTTTAGTAGATGTAACAT 57.637 33.333 0.00 0.00 46.39 2.71
3461 3914 9.933723 AACGTAAGGTTTAGTAGATGTAACATT 57.066 29.630 0.00 0.00 46.39 2.71
3462 3915 9.362539 ACGTAAGGTTTAGTAGATGTAACATTG 57.637 33.333 0.00 0.00 46.39 2.82
3463 3916 8.325997 CGTAAGGTTTAGTAGATGTAACATTGC 58.674 37.037 0.00 0.00 0.00 3.56
3464 3917 9.379791 GTAAGGTTTAGTAGATGTAACATTGCT 57.620 33.333 0.00 0.00 28.91 3.91
3465 3918 8.494016 AAGGTTTAGTAGATGTAACATTGCTC 57.506 34.615 0.00 0.00 0.00 4.26
3466 3919 7.620880 AGGTTTAGTAGATGTAACATTGCTCA 58.379 34.615 0.00 0.00 0.00 4.26
3467 3920 8.100791 AGGTTTAGTAGATGTAACATTGCTCAA 58.899 33.333 0.00 0.00 0.00 3.02
3468 3921 8.391106 GGTTTAGTAGATGTAACATTGCTCAAG 58.609 37.037 0.00 0.00 0.00 3.02
3469 3922 7.539712 TTAGTAGATGTAACATTGCTCAAGC 57.460 36.000 0.00 0.00 42.50 4.01
3470 3923 5.738909 AGTAGATGTAACATTGCTCAAGCT 58.261 37.500 3.32 0.00 42.66 3.74
3522 3975 6.947733 CCCTCATATTTGATGGCCTACATTAA 59.052 38.462 3.32 0.00 40.72 1.40
3553 4007 9.599322 CATAAATAACTGTCGAATGATAAAGGC 57.401 33.333 0.00 0.00 0.00 4.35
3555 4009 2.919228 ACTGTCGAATGATAAAGGCCC 58.081 47.619 0.00 0.00 0.00 5.80
3559 4013 4.082845 TGTCGAATGATAAAGGCCCAAAA 58.917 39.130 0.00 0.00 0.00 2.44
3560 4014 4.082463 TGTCGAATGATAAAGGCCCAAAAC 60.082 41.667 0.00 0.00 0.00 2.43
3561 4015 3.127895 TCGAATGATAAAGGCCCAAAACG 59.872 43.478 0.00 0.00 0.00 3.60
3562 4016 2.959507 ATGATAAAGGCCCAAAACGC 57.040 45.000 0.00 0.00 0.00 4.84
3572 4026 0.250124 CCCAAAACGCCCCCTTTTTC 60.250 55.000 0.00 0.00 0.00 2.29
3587 4041 4.320202 CCCTTTTTCATGGTGTTCTGTACG 60.320 45.833 0.00 0.00 0.00 3.67
3747 4203 9.791820 ATTTTTACAATTATACGGCTAACCAAC 57.208 29.630 0.00 0.00 34.57 3.77
3763 4220 7.043656 GGCTAACCAACGTTTCATATTTATTGC 60.044 37.037 0.00 0.00 35.26 3.56
3782 4239 1.534163 GCGAAAACGGCTAAAAGTCCT 59.466 47.619 0.00 0.00 0.00 3.85
3834 4291 9.448438 TGCACTCAACTAAATTATTGTGATAGT 57.552 29.630 0.00 0.00 0.00 2.12
3835 4292 9.922305 GCACTCAACTAAATTATTGTGATAGTC 57.078 33.333 0.00 0.00 0.00 2.59
3850 4307 9.911788 ATTGTGATAGTCTGACTTAAAATGGAT 57.088 29.630 16.53 0.15 0.00 3.41
3851 4308 8.722480 TGTGATAGTCTGACTTAAAATGGATG 57.278 34.615 16.53 0.00 0.00 3.51
3852 4309 8.539544 TGTGATAGTCTGACTTAAAATGGATGA 58.460 33.333 16.53 0.00 0.00 2.92
3853 4310 9.553064 GTGATAGTCTGACTTAAAATGGATGAT 57.447 33.333 16.53 0.00 0.00 2.45
3857 4314 6.995091 AGTCTGACTTAAAATGGATGATAGGC 59.005 38.462 4.06 0.00 0.00 3.93
3858 4315 6.995091 GTCTGACTTAAAATGGATGATAGGCT 59.005 38.462 0.00 0.00 0.00 4.58
3859 4316 8.150945 GTCTGACTTAAAATGGATGATAGGCTA 58.849 37.037 0.00 0.00 0.00 3.93
3860 4317 8.150945 TCTGACTTAAAATGGATGATAGGCTAC 58.849 37.037 0.00 0.00 0.00 3.58
3861 4318 8.034313 TGACTTAAAATGGATGATAGGCTACT 57.966 34.615 0.00 0.00 0.00 2.57
3862 4319 8.150945 TGACTTAAAATGGATGATAGGCTACTC 58.849 37.037 0.00 0.00 0.00 2.59
3863 4320 8.034313 ACTTAAAATGGATGATAGGCTACTCA 57.966 34.615 0.00 2.80 0.00 3.41
3864 4321 8.153550 ACTTAAAATGGATGATAGGCTACTCAG 58.846 37.037 0.00 0.00 0.00 3.35
3865 4322 6.753913 AAAATGGATGATAGGCTACTCAGA 57.246 37.500 0.00 0.00 0.00 3.27
3866 4323 6.949117 AAATGGATGATAGGCTACTCAGAT 57.051 37.500 0.00 0.00 0.00 2.90
3867 4324 6.543430 AATGGATGATAGGCTACTCAGATC 57.457 41.667 0.00 0.00 0.00 2.75
3868 4325 5.003096 TGGATGATAGGCTACTCAGATCA 57.997 43.478 0.00 0.00 0.00 2.92
3869 4326 5.397360 TGGATGATAGGCTACTCAGATCAA 58.603 41.667 0.00 0.00 30.75 2.57
3870 4327 6.021672 TGGATGATAGGCTACTCAGATCAAT 58.978 40.000 0.00 0.00 30.75 2.57
3871 4328 7.184862 TGGATGATAGGCTACTCAGATCAATA 58.815 38.462 0.00 0.00 30.75 1.90
3872 4329 7.675619 TGGATGATAGGCTACTCAGATCAATAA 59.324 37.037 0.00 0.00 30.75 1.40
3873 4330 8.196771 GGATGATAGGCTACTCAGATCAATAAG 58.803 40.741 0.00 0.00 30.75 1.73
3874 4331 8.891985 ATGATAGGCTACTCAGATCAATAAGA 57.108 34.615 0.00 0.00 30.75 2.10
3875 4332 8.712228 TGATAGGCTACTCAGATCAATAAGAA 57.288 34.615 0.00 0.00 0.00 2.52
3876 4333 9.147732 TGATAGGCTACTCAGATCAATAAGAAA 57.852 33.333 0.00 0.00 0.00 2.52
3879 4336 8.900983 AGGCTACTCAGATCAATAAGAAATTC 57.099 34.615 0.00 0.00 0.00 2.17
3880 4337 7.936301 AGGCTACTCAGATCAATAAGAAATTCC 59.064 37.037 0.00 0.00 0.00 3.01
3881 4338 7.936301 GGCTACTCAGATCAATAAGAAATTCCT 59.064 37.037 0.00 0.00 0.00 3.36
3882 4339 9.336171 GCTACTCAGATCAATAAGAAATTCCTT 57.664 33.333 0.00 0.00 0.00 3.36
3894 4351 5.966742 AGAAATTCCTTCTTTTTCGGGAG 57.033 39.130 0.00 0.00 41.97 4.30
3895 4352 4.218635 AGAAATTCCTTCTTTTTCGGGAGC 59.781 41.667 0.00 0.00 41.97 4.70
3896 4353 1.905637 TTCCTTCTTTTTCGGGAGCC 58.094 50.000 0.00 0.00 0.00 4.70
3897 4354 0.037734 TCCTTCTTTTTCGGGAGCCC 59.962 55.000 0.00 0.00 0.00 5.19
3898 4355 0.251165 CCTTCTTTTTCGGGAGCCCA 60.251 55.000 6.34 0.00 35.37 5.36
3899 4356 1.616994 CCTTCTTTTTCGGGAGCCCAT 60.617 52.381 6.34 0.00 35.37 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.915293 ACGTCATATTTCTGTGGTTATCAAA 57.085 32.000 0.00 0.00 0.00 2.69
1 2 9.607988 AATACGTCATATTTCTGTGGTTATCAA 57.392 29.630 0.00 0.00 28.26 2.57
2 3 9.040939 CAATACGTCATATTTCTGTGGTTATCA 57.959 33.333 0.00 0.00 30.54 2.15
3 4 8.009974 GCAATACGTCATATTTCTGTGGTTATC 58.990 37.037 0.00 0.00 30.54 1.75
6 7 5.880332 AGCAATACGTCATATTTCTGTGGTT 59.120 36.000 0.00 0.00 30.54 3.67
7 8 5.428253 AGCAATACGTCATATTTCTGTGGT 58.572 37.500 0.00 0.00 30.54 4.16
8 9 5.991328 AGCAATACGTCATATTTCTGTGG 57.009 39.130 0.00 0.00 30.54 4.17
9 10 7.003939 TGAAGCAATACGTCATATTTCTGTG 57.996 36.000 0.00 0.00 31.34 3.66
10 11 7.254898 CCATGAAGCAATACGTCATATTTCTGT 60.255 37.037 0.00 0.00 44.42 3.41
11 12 7.073883 CCATGAAGCAATACGTCATATTTCTG 58.926 38.462 0.00 0.00 44.42 3.02
12 13 6.293626 GCCATGAAGCAATACGTCATATTTCT 60.294 38.462 0.00 0.00 44.42 2.52
13 14 5.853282 GCCATGAAGCAATACGTCATATTTC 59.147 40.000 0.00 0.00 44.42 2.17
14 15 5.532406 AGCCATGAAGCAATACGTCATATTT 59.468 36.000 0.00 0.00 44.42 1.40
15 16 5.065914 AGCCATGAAGCAATACGTCATATT 58.934 37.500 0.00 0.00 44.42 1.28
16 17 4.645535 AGCCATGAAGCAATACGTCATAT 58.354 39.130 0.00 0.00 44.42 1.78
17 18 4.071961 AGCCATGAAGCAATACGTCATA 57.928 40.909 0.00 0.00 44.42 2.15
18 19 2.923121 AGCCATGAAGCAATACGTCAT 58.077 42.857 0.00 0.00 46.76 3.06
19 20 2.401583 AGCCATGAAGCAATACGTCA 57.598 45.000 0.00 0.00 41.18 4.35
20 21 5.465390 TGTAATAGCCATGAAGCAATACGTC 59.535 40.000 0.00 0.00 34.23 4.34
21 22 5.364778 TGTAATAGCCATGAAGCAATACGT 58.635 37.500 0.00 0.00 34.23 3.57
22 23 5.922739 TGTAATAGCCATGAAGCAATACG 57.077 39.130 0.00 0.00 34.23 3.06
23 24 6.430925 TGGATGTAATAGCCATGAAGCAATAC 59.569 38.462 0.00 0.00 40.67 1.89
24 25 6.541907 TGGATGTAATAGCCATGAAGCAATA 58.458 36.000 0.00 0.00 40.67 1.90
25 26 5.387788 TGGATGTAATAGCCATGAAGCAAT 58.612 37.500 0.00 0.00 40.67 3.56
26 27 4.790937 TGGATGTAATAGCCATGAAGCAA 58.209 39.130 0.00 0.00 40.67 3.91
27 28 4.436113 TGGATGTAATAGCCATGAAGCA 57.564 40.909 0.00 0.00 40.67 3.91
35 36 6.670695 AAATTTGGGATGGATGTAATAGCC 57.329 37.500 0.00 0.00 34.64 3.93
152 153 5.476945 CCCCTTAAATAATACCACCTGCATC 59.523 44.000 0.00 0.00 0.00 3.91
155 156 4.149598 CCCCCTTAAATAATACCACCTGC 58.850 47.826 0.00 0.00 0.00 4.85
156 157 5.397553 ACCCCCTTAAATAATACCACCTG 57.602 43.478 0.00 0.00 0.00 4.00
161 162 7.233962 CCCATGTAAACCCCCTTAAATAATACC 59.766 40.741 0.00 0.00 0.00 2.73
233 235 7.088272 TGCGTATATATTAGCGTCTGAACATT 58.912 34.615 0.00 0.00 0.00 2.71
234 236 6.617879 TGCGTATATATTAGCGTCTGAACAT 58.382 36.000 0.00 0.00 0.00 2.71
255 257 7.907045 GCATTCATAAGGATGAGTTTATATGCG 59.093 37.037 0.00 0.00 43.03 4.73
286 288 2.866762 CTGATAGGAGTAAGGTTTGCGC 59.133 50.000 0.00 0.00 0.00 6.09
309 311 2.926838 GTCAGCTCAATCTTTCGGAGAC 59.073 50.000 0.00 0.00 37.17 3.36
313 315 3.264947 TGATGTCAGCTCAATCTTTCGG 58.735 45.455 0.00 0.00 0.00 4.30
314 316 5.481200 AATGATGTCAGCTCAATCTTTCG 57.519 39.130 0.00 0.00 0.00 3.46
323 325 8.618677 TCATCAATCTTAAAATGATGTCAGCTC 58.381 33.333 17.50 0.00 46.61 4.09
336 338 7.223584 TCTGTGGTGACTTCATCAATCTTAAA 58.776 34.615 0.00 0.00 38.92 1.52
377 379 1.546029 TCAGTGGAGGAGACATTGTCG 59.454 52.381 11.01 0.00 37.67 4.35
379 381 2.705658 TGTTCAGTGGAGGAGACATTGT 59.294 45.455 0.00 0.00 0.00 2.71
380 382 3.407424 TGTTCAGTGGAGGAGACATTG 57.593 47.619 0.00 0.00 0.00 2.82
391 393 5.885230 TTTCTATGATGCTTGTTCAGTGG 57.115 39.130 0.00 0.00 0.00 4.00
458 460 8.365060 ACCAATCCATCATGTTTTGAATTCTA 57.635 30.769 7.05 0.00 38.03 2.10
517 519 0.654683 GCAGCCTAGCACGAATTGAG 59.345 55.000 0.00 0.00 0.00 3.02
524 526 2.194271 GTAACTAAGCAGCCTAGCACG 58.806 52.381 0.00 0.00 36.85 5.34
604 606 7.445402 GGAGGTAGTATATACGTGTCCAACTAA 59.555 40.741 15.90 0.00 0.00 2.24
636 638 9.347934 TGCAAAATACGAGTTAACCAATAAATG 57.652 29.630 0.88 0.00 0.00 2.32
637 639 9.349145 GTGCAAAATACGAGTTAACCAATAAAT 57.651 29.630 0.88 0.00 0.00 1.40
648 650 7.699566 TCAAAGTTTAGTGCAAAATACGAGTT 58.300 30.769 0.00 0.00 0.00 3.01
727 740 7.984422 ACAACATCATCAGAAACTATGTTCA 57.016 32.000 0.00 0.00 38.39 3.18
781 794 6.145535 GTCACACTTTGATCAGGATTTTCAC 58.854 40.000 0.00 0.00 36.32 3.18
799 812 1.283736 CGCCGTATTTAGGGTCACAC 58.716 55.000 0.00 0.00 33.89 3.82
801 814 0.531311 CCCGCCGTATTTAGGGTCAC 60.531 60.000 0.00 0.00 39.05 3.67
802 815 0.687098 TCCCGCCGTATTTAGGGTCA 60.687 55.000 0.00 0.00 44.13 4.02
807 820 5.406477 GGTTTATTAGTCCCGCCGTATTTAG 59.594 44.000 0.00 0.00 0.00 1.85
814 827 1.578583 CTGGTTTATTAGTCCCGCCG 58.421 55.000 0.00 0.00 0.00 6.46
816 829 2.994186 TCCTGGTTTATTAGTCCCGC 57.006 50.000 0.00 0.00 0.00 6.13
873 887 4.586841 TGACTGATTTTCGTTTGGGGATTT 59.413 37.500 0.00 0.00 0.00 2.17
916 930 5.625311 GCGAACTCAGACCAAAAATAGTTTG 59.375 40.000 0.00 0.00 33.42 2.93
929 943 3.555428 GCACAGGCGAACTCAGAC 58.445 61.111 0.00 0.00 0.00 3.51
948 962 4.097437 CGAACCGCCAGGCTATATATAAGA 59.903 45.833 10.54 0.00 42.76 2.10
1050 1071 2.879233 AACGGCGCAGAGGAGGAAA 61.879 57.895 16.26 0.00 0.00 3.13
1131 1158 3.736252 CAGTAAGTGACGCTATGTATGGC 59.264 47.826 0.00 0.00 0.00 4.40
1171 1213 4.814294 AGACCCGCCGACATTCGC 62.814 66.667 0.00 0.00 38.82 4.70
1227 1272 4.483243 GGGAGCGGATTTGGCGGA 62.483 66.667 0.00 0.00 35.00 5.54
1291 1339 1.592223 GGTCCGGGAGAGTGAAGTG 59.408 63.158 0.00 0.00 0.00 3.16
1355 1403 1.404391 CGTACTTCGCCATGTACTCCT 59.596 52.381 6.08 0.00 37.47 3.69
1368 1416 2.577785 GATGGCGCGCTCGTACTTC 61.578 63.158 32.29 16.71 38.14 3.01
1413 1461 0.037975 GGTAGAAACTTCGCGGGTCA 60.038 55.000 6.13 0.00 0.00 4.02
1422 1470 3.181434 TGTTGGCCATCTGGTAGAAACTT 60.181 43.478 6.09 0.00 37.57 2.66
1425 1473 3.620488 GATGTTGGCCATCTGGTAGAAA 58.380 45.455 6.09 0.00 45.50 2.52
1705 1765 3.314331 CACGAGACTGGGTGGCCT 61.314 66.667 3.32 0.00 0.00 5.19
1706 1766 4.394712 CCACGAGACTGGGTGGCC 62.395 72.222 8.85 0.00 46.34 5.36
1845 2108 5.333416 GCTCGAAAATATTCCGCTAAAGGAG 60.333 44.000 5.60 0.00 41.98 3.69
1873 2136 2.242043 ACCGACGGAGGAAGAACTAAA 58.758 47.619 23.38 0.00 34.73 1.85
1879 2142 3.094572 AGAAATTACCGACGGAGGAAGA 58.905 45.455 23.38 0.00 34.73 2.87
1888 2151 3.071479 TGAGCCACAAGAAATTACCGAC 58.929 45.455 0.00 0.00 0.00 4.79
1891 2154 6.512297 TCTTTTTGAGCCACAAGAAATTACC 58.488 36.000 0.00 0.00 39.77 2.85
1971 2234 3.394674 TTATCGTTCAGTGAGCCACAA 57.605 42.857 0.93 0.00 36.74 3.33
1972 2235 3.394674 TTTATCGTTCAGTGAGCCACA 57.605 42.857 0.93 0.00 36.74 4.17
1973 2236 3.309954 GGATTTATCGTTCAGTGAGCCAC 59.690 47.826 0.93 0.00 34.10 5.01
1974 2237 3.531538 GGATTTATCGTTCAGTGAGCCA 58.468 45.455 0.93 0.00 0.00 4.75
1975 2238 2.540101 CGGATTTATCGTTCAGTGAGCC 59.460 50.000 0.93 0.00 0.00 4.70
1976 2239 2.540101 CCGGATTTATCGTTCAGTGAGC 59.460 50.000 0.00 0.00 0.00 4.26
2196 2559 1.104630 GTAGAAGAGTGGGTCTCGGG 58.895 60.000 0.00 0.00 46.86 5.14
2257 2620 4.124351 CGGGTAGCGCCGACTTCA 62.124 66.667 2.29 0.00 38.44 3.02
2270 2633 4.318949 GCCACGGTAACCACGGGT 62.319 66.667 0.00 0.00 37.65 5.28
2351 2714 2.900273 GGTGATCCGCACTAGGCA 59.100 61.111 0.00 0.00 46.86 4.75
2398 2761 3.764237 ACTCCATCAAACTTGTACCGT 57.236 42.857 0.00 0.00 0.00 4.83
2416 2779 4.666253 AGCCACGGCATGCCAACT 62.666 61.111 34.93 22.25 44.88 3.16
2456 2819 6.508777 AGGCTTTATTTTTGCTAACGTTTGA 58.491 32.000 14.01 0.00 0.00 2.69
2556 2928 1.517242 CTCCTTCTCTTGCGTGCTTT 58.483 50.000 0.00 0.00 0.00 3.51
2602 2974 0.911769 TTCCATCGGTCTCAATGCCT 59.088 50.000 0.00 0.00 0.00 4.75
2617 2989 3.563808 CGAACTTGACCATTTCTGTTCCA 59.436 43.478 0.00 0.00 36.19 3.53
2642 3014 0.821517 TCCATGGCGTTCACGTAGAT 59.178 50.000 6.96 0.00 42.22 1.98
2804 3176 1.552337 AGTCTCATCACCGTCTGCATT 59.448 47.619 0.00 0.00 0.00 3.56
3161 3612 8.188139 TCAGATTTACAAAACCAAGACAAAGAC 58.812 33.333 0.00 0.00 0.00 3.01
3276 3729 9.654417 GTTCGCAGAAGTAGTATTTTTGTTTTA 57.346 29.630 0.00 0.00 45.90 1.52
3277 3730 8.185505 TGTTCGCAGAAGTAGTATTTTTGTTTT 58.814 29.630 0.00 0.00 45.90 2.43
3278 3731 7.699566 TGTTCGCAGAAGTAGTATTTTTGTTT 58.300 30.769 0.00 0.00 45.90 2.83
3279 3732 7.254227 TGTTCGCAGAAGTAGTATTTTTGTT 57.746 32.000 0.00 0.00 45.90 2.83
3280 3733 6.854496 TGTTCGCAGAAGTAGTATTTTTGT 57.146 33.333 0.00 0.00 45.90 2.83
3281 3734 6.299966 CGTTGTTCGCAGAAGTAGTATTTTTG 59.700 38.462 0.00 0.00 45.90 2.44
3282 3735 6.018507 ACGTTGTTCGCAGAAGTAGTATTTTT 60.019 34.615 0.00 0.00 45.90 1.94
3283 3736 5.464389 ACGTTGTTCGCAGAAGTAGTATTTT 59.536 36.000 0.00 0.00 45.90 1.82
3284 3737 4.986659 ACGTTGTTCGCAGAAGTAGTATTT 59.013 37.500 0.00 0.00 45.90 1.40
3285 3738 4.553323 ACGTTGTTCGCAGAAGTAGTATT 58.447 39.130 0.00 0.00 45.90 1.89
3286 3739 4.170292 ACGTTGTTCGCAGAAGTAGTAT 57.830 40.909 0.00 0.00 45.90 2.12
3287 3740 3.631145 ACGTTGTTCGCAGAAGTAGTA 57.369 42.857 0.00 0.00 45.90 1.82
3288 3741 2.503920 ACGTTGTTCGCAGAAGTAGT 57.496 45.000 0.00 0.00 45.90 2.73
3289 3742 3.181556 CGTAACGTTGTTCGCAGAAGTAG 60.182 47.826 11.99 0.00 45.90 2.57
3290 3743 2.720578 CGTAACGTTGTTCGCAGAAGTA 59.279 45.455 11.99 0.00 45.90 2.24
3291 3744 1.519758 CGTAACGTTGTTCGCAGAAGT 59.480 47.619 11.99 0.00 45.90 3.01
3292 3745 1.782569 TCGTAACGTTGTTCGCAGAAG 59.217 47.619 11.99 0.00 45.90 2.85
3293 3746 1.837648 TCGTAACGTTGTTCGCAGAA 58.162 45.000 11.99 0.00 45.90 3.02
3294 3747 1.782569 CTTCGTAACGTTGTTCGCAGA 59.217 47.619 11.99 0.00 44.19 4.26
3295 3748 1.717429 GCTTCGTAACGTTGTTCGCAG 60.717 52.381 11.99 13.08 44.19 5.18
3296 3749 0.230260 GCTTCGTAACGTTGTTCGCA 59.770 50.000 11.99 3.04 44.19 5.10
3297 3750 0.449993 GGCTTCGTAACGTTGTTCGC 60.450 55.000 11.99 6.94 44.19 4.70
3298 3751 1.134226 AGGCTTCGTAACGTTGTTCG 58.866 50.000 11.99 12.83 46.00 3.95
3299 3752 3.120889 GGTAAGGCTTCGTAACGTTGTTC 60.121 47.826 11.99 0.47 0.00 3.18
3300 3753 2.802247 GGTAAGGCTTCGTAACGTTGTT 59.198 45.455 11.99 0.00 0.00 2.83
3301 3754 2.036346 AGGTAAGGCTTCGTAACGTTGT 59.964 45.455 11.99 0.00 0.00 3.32
3302 3755 2.680577 AGGTAAGGCTTCGTAACGTTG 58.319 47.619 11.99 0.00 0.00 4.10
3303 3756 4.519540 TTAGGTAAGGCTTCGTAACGTT 57.480 40.909 1.30 5.88 0.00 3.99
3304 3757 4.725790 ATTAGGTAAGGCTTCGTAACGT 57.274 40.909 1.30 0.24 0.00 3.99
3305 3758 6.413018 AAAATTAGGTAAGGCTTCGTAACG 57.587 37.500 1.30 0.00 0.00 3.18
3306 3759 6.596888 AGGAAAATTAGGTAAGGCTTCGTAAC 59.403 38.462 1.30 0.00 0.00 2.50
3307 3760 6.714278 AGGAAAATTAGGTAAGGCTTCGTAA 58.286 36.000 1.30 8.42 0.00 3.18
3308 3761 6.303903 AGGAAAATTAGGTAAGGCTTCGTA 57.696 37.500 1.30 0.00 0.00 3.43
3309 3762 5.175388 AGGAAAATTAGGTAAGGCTTCGT 57.825 39.130 1.30 0.07 0.00 3.85
3310 3763 7.414873 GGTTTAGGAAAATTAGGTAAGGCTTCG 60.415 40.741 1.30 0.00 0.00 3.79
3311 3764 7.395206 TGGTTTAGGAAAATTAGGTAAGGCTTC 59.605 37.037 1.30 0.00 0.00 3.86
3312 3765 7.177921 GTGGTTTAGGAAAATTAGGTAAGGCTT 59.822 37.037 4.58 4.58 0.00 4.35
3313 3766 6.662234 GTGGTTTAGGAAAATTAGGTAAGGCT 59.338 38.462 0.00 0.00 0.00 4.58
3314 3767 6.434965 TGTGGTTTAGGAAAATTAGGTAAGGC 59.565 38.462 0.00 0.00 0.00 4.35
3315 3768 8.589701 ATGTGGTTTAGGAAAATTAGGTAAGG 57.410 34.615 0.00 0.00 0.00 2.69
3317 3770 8.732531 CGAATGTGGTTTAGGAAAATTAGGTAA 58.267 33.333 0.00 0.00 0.00 2.85
3318 3771 7.148205 GCGAATGTGGTTTAGGAAAATTAGGTA 60.148 37.037 0.00 0.00 0.00 3.08
3319 3772 6.349860 GCGAATGTGGTTTAGGAAAATTAGGT 60.350 38.462 0.00 0.00 0.00 3.08
3320 3773 6.033966 GCGAATGTGGTTTAGGAAAATTAGG 58.966 40.000 0.00 0.00 0.00 2.69
3321 3774 6.033966 GGCGAATGTGGTTTAGGAAAATTAG 58.966 40.000 0.00 0.00 0.00 1.73
3322 3775 5.105675 GGGCGAATGTGGTTTAGGAAAATTA 60.106 40.000 0.00 0.00 0.00 1.40
3323 3776 4.322424 GGGCGAATGTGGTTTAGGAAAATT 60.322 41.667 0.00 0.00 0.00 1.82
3324 3777 3.194755 GGGCGAATGTGGTTTAGGAAAAT 59.805 43.478 0.00 0.00 0.00 1.82
3325 3778 2.559231 GGGCGAATGTGGTTTAGGAAAA 59.441 45.455 0.00 0.00 0.00 2.29
3326 3779 2.164338 GGGCGAATGTGGTTTAGGAAA 58.836 47.619 0.00 0.00 0.00 3.13
3327 3780 1.614850 GGGGCGAATGTGGTTTAGGAA 60.615 52.381 0.00 0.00 0.00 3.36
3328 3781 0.034863 GGGGCGAATGTGGTTTAGGA 60.035 55.000 0.00 0.00 0.00 2.94
3329 3782 1.035385 GGGGGCGAATGTGGTTTAGG 61.035 60.000 0.00 0.00 0.00 2.69
3330 3783 2.489040 GGGGGCGAATGTGGTTTAG 58.511 57.895 0.00 0.00 0.00 1.85
3331 3784 4.747218 GGGGGCGAATGTGGTTTA 57.253 55.556 0.00 0.00 0.00 2.01
3354 3807 2.453242 CCCCCTAGAAATCCCGGAG 58.547 63.158 0.73 0.00 0.00 4.63
3355 3808 4.741647 CCCCCTAGAAATCCCGGA 57.258 61.111 0.73 0.00 0.00 5.14
3376 3829 4.902258 GTAGGGGGAGGAGGGGCC 62.902 77.778 0.00 0.00 0.00 5.80
3377 3830 3.349090 AAGTAGGGGGAGGAGGGGC 62.349 68.421 0.00 0.00 0.00 5.80
3378 3831 1.074395 GAAGTAGGGGGAGGAGGGG 60.074 68.421 0.00 0.00 0.00 4.79
3379 3832 1.074395 GGAAGTAGGGGGAGGAGGG 60.074 68.421 0.00 0.00 0.00 4.30
3380 3833 0.044244 TTGGAAGTAGGGGGAGGAGG 59.956 60.000 0.00 0.00 0.00 4.30
3381 3834 2.198334 ATTGGAAGTAGGGGGAGGAG 57.802 55.000 0.00 0.00 0.00 3.69
3382 3835 3.246572 TGTTATTGGAAGTAGGGGGAGGA 60.247 47.826 0.00 0.00 0.00 3.71
3383 3836 3.120108 TGTTATTGGAAGTAGGGGGAGG 58.880 50.000 0.00 0.00 0.00 4.30
3384 3837 3.780850 ACTGTTATTGGAAGTAGGGGGAG 59.219 47.826 0.00 0.00 0.00 4.30
3385 3838 3.778629 GACTGTTATTGGAAGTAGGGGGA 59.221 47.826 0.00 0.00 0.00 4.81
3386 3839 3.780850 AGACTGTTATTGGAAGTAGGGGG 59.219 47.826 0.00 0.00 0.00 5.40
3387 3840 4.770795 CAGACTGTTATTGGAAGTAGGGG 58.229 47.826 0.00 0.00 0.00 4.79
3388 3841 4.192317 GCAGACTGTTATTGGAAGTAGGG 58.808 47.826 3.99 0.00 0.00 3.53
3389 3842 4.192317 GGCAGACTGTTATTGGAAGTAGG 58.808 47.826 3.99 0.00 0.00 3.18
3390 3843 4.631813 GTGGCAGACTGTTATTGGAAGTAG 59.368 45.833 3.99 0.00 0.00 2.57
3391 3844 4.564821 GGTGGCAGACTGTTATTGGAAGTA 60.565 45.833 3.99 0.00 0.00 2.24
3392 3845 3.412386 GTGGCAGACTGTTATTGGAAGT 58.588 45.455 3.99 0.00 0.00 3.01
3393 3846 2.749621 GGTGGCAGACTGTTATTGGAAG 59.250 50.000 3.99 0.00 0.00 3.46
3394 3847 2.375174 AGGTGGCAGACTGTTATTGGAA 59.625 45.455 3.99 0.00 0.00 3.53
3395 3848 1.985159 AGGTGGCAGACTGTTATTGGA 59.015 47.619 3.99 0.00 0.00 3.53
3396 3849 2.086869 CAGGTGGCAGACTGTTATTGG 58.913 52.381 3.99 0.00 0.00 3.16
3397 3850 2.086869 CCAGGTGGCAGACTGTTATTG 58.913 52.381 15.48 0.00 32.90 1.90
3398 3851 1.705186 ACCAGGTGGCAGACTGTTATT 59.295 47.619 15.48 0.00 39.32 1.40
3399 3852 1.362224 ACCAGGTGGCAGACTGTTAT 58.638 50.000 15.48 1.65 39.32 1.89
3400 3853 1.136828 AACCAGGTGGCAGACTGTTA 58.863 50.000 15.48 0.00 39.32 2.41
3401 3854 0.466189 CAACCAGGTGGCAGACTGTT 60.466 55.000 15.48 8.79 39.32 3.16
3402 3855 1.149174 CAACCAGGTGGCAGACTGT 59.851 57.895 15.48 4.20 39.32 3.55
3403 3856 0.466189 AACAACCAGGTGGCAGACTG 60.466 55.000 11.16 11.16 39.32 3.51
3404 3857 0.258774 AAACAACCAGGTGGCAGACT 59.741 50.000 0.00 0.00 39.32 3.24
3405 3858 1.975660 TAAACAACCAGGTGGCAGAC 58.024 50.000 0.00 0.00 39.32 3.51
3406 3859 2.158534 ACATAAACAACCAGGTGGCAGA 60.159 45.455 0.00 0.00 39.32 4.26
3407 3860 2.238521 ACATAAACAACCAGGTGGCAG 58.761 47.619 0.00 0.00 39.32 4.85
3408 3861 2.373335 ACATAAACAACCAGGTGGCA 57.627 45.000 0.00 0.00 39.32 4.92
3409 3862 4.857509 TTTACATAAACAACCAGGTGGC 57.142 40.909 0.00 0.00 39.32 5.01
3410 3863 6.039941 TGAGTTTTACATAAACAACCAGGTGG 59.960 38.462 0.00 0.00 35.49 4.61
3411 3864 7.033530 TGAGTTTTACATAAACAACCAGGTG 57.966 36.000 0.00 0.00 32.81 4.00
3412 3865 7.485810 GTTGAGTTTTACATAAACAACCAGGT 58.514 34.615 0.00 0.00 32.82 4.00
3413 3866 6.635239 CGTTGAGTTTTACATAAACAACCAGG 59.365 38.462 0.00 0.00 34.62 4.45
3414 3867 7.190871 ACGTTGAGTTTTACATAAACAACCAG 58.809 34.615 0.00 0.00 34.62 4.00
3415 3868 7.086230 ACGTTGAGTTTTACATAAACAACCA 57.914 32.000 0.00 0.00 34.62 3.67
3416 3869 9.161684 CTTACGTTGAGTTTTACATAAACAACC 57.838 33.333 0.00 0.00 34.62 3.77
3417 3870 9.161684 CCTTACGTTGAGTTTTACATAAACAAC 57.838 33.333 0.00 0.00 34.72 3.32
3418 3871 8.891720 ACCTTACGTTGAGTTTTACATAAACAA 58.108 29.630 0.00 0.00 32.81 2.83
3419 3872 8.436046 ACCTTACGTTGAGTTTTACATAAACA 57.564 30.769 0.00 0.00 32.81 2.83
3420 3873 9.720667 AAACCTTACGTTGAGTTTTACATAAAC 57.279 29.630 0.00 0.00 33.93 2.01
3423 3876 9.762933 ACTAAACCTTACGTTGAGTTTTACATA 57.237 29.630 12.70 0.00 42.76 2.29
3424 3877 8.667076 ACTAAACCTTACGTTGAGTTTTACAT 57.333 30.769 12.70 0.00 42.76 2.29
3425 3878 9.248291 CTACTAAACCTTACGTTGAGTTTTACA 57.752 33.333 12.70 0.00 42.76 2.41
3426 3879 9.463443 TCTACTAAACCTTACGTTGAGTTTTAC 57.537 33.333 12.70 0.00 42.76 2.01
3428 3881 8.985805 CATCTACTAAACCTTACGTTGAGTTTT 58.014 33.333 12.70 6.98 42.76 2.43
3429 3882 8.146412 ACATCTACTAAACCTTACGTTGAGTTT 58.854 33.333 12.27 12.27 42.76 2.66
3430 3883 7.664758 ACATCTACTAAACCTTACGTTGAGTT 58.335 34.615 0.00 0.00 42.76 3.01
3431 3884 7.224522 ACATCTACTAAACCTTACGTTGAGT 57.775 36.000 0.00 0.00 46.41 3.41
3432 3885 9.070149 GTTACATCTACTAAACCTTACGTTGAG 57.930 37.037 0.00 0.00 38.75 3.02
3433 3886 8.575589 TGTTACATCTACTAAACCTTACGTTGA 58.424 33.333 0.00 0.00 33.93 3.18
3434 3887 8.746922 TGTTACATCTACTAAACCTTACGTTG 57.253 34.615 0.00 0.00 33.93 4.10
3435 3888 9.933723 AATGTTACATCTACTAAACCTTACGTT 57.066 29.630 0.00 0.00 35.70 3.99
3436 3889 9.362539 CAATGTTACATCTACTAAACCTTACGT 57.637 33.333 0.00 0.00 0.00 3.57
3437 3890 8.325997 GCAATGTTACATCTACTAAACCTTACG 58.674 37.037 0.00 0.00 0.00 3.18
3438 3891 9.379791 AGCAATGTTACATCTACTAAACCTTAC 57.620 33.333 0.00 0.00 0.00 2.34
3439 3892 9.595823 GAGCAATGTTACATCTACTAAACCTTA 57.404 33.333 0.00 0.00 0.00 2.69
3440 3893 8.100791 TGAGCAATGTTACATCTACTAAACCTT 58.899 33.333 0.00 0.00 0.00 3.50
3441 3894 7.620880 TGAGCAATGTTACATCTACTAAACCT 58.379 34.615 0.00 0.00 0.00 3.50
3442 3895 7.843490 TGAGCAATGTTACATCTACTAAACC 57.157 36.000 0.00 0.00 0.00 3.27
3443 3896 7.905493 GCTTGAGCAATGTTACATCTACTAAAC 59.095 37.037 0.00 0.00 41.59 2.01
3444 3897 7.824289 AGCTTGAGCAATGTTACATCTACTAAA 59.176 33.333 5.70 0.00 45.16 1.85
3445 3898 7.331026 AGCTTGAGCAATGTTACATCTACTAA 58.669 34.615 5.70 0.00 45.16 2.24
3446 3899 6.878317 AGCTTGAGCAATGTTACATCTACTA 58.122 36.000 5.70 0.00 45.16 1.82
3447 3900 5.738909 AGCTTGAGCAATGTTACATCTACT 58.261 37.500 5.70 0.00 45.16 2.57
3448 3901 7.539712 TTAGCTTGAGCAATGTTACATCTAC 57.460 36.000 5.70 0.00 45.16 2.59
3449 3902 8.450964 GTTTTAGCTTGAGCAATGTTACATCTA 58.549 33.333 5.70 0.00 45.16 1.98
3450 3903 7.040478 TGTTTTAGCTTGAGCAATGTTACATCT 60.040 33.333 5.70 0.00 45.16 2.90
3451 3904 7.083858 TGTTTTAGCTTGAGCAATGTTACATC 58.916 34.615 5.70 0.00 45.16 3.06
3452 3905 6.980593 TGTTTTAGCTTGAGCAATGTTACAT 58.019 32.000 5.70 0.00 45.16 2.29
3453 3906 6.384258 TGTTTTAGCTTGAGCAATGTTACA 57.616 33.333 5.70 0.00 45.16 2.41
3454 3907 7.272084 CAGATGTTTTAGCTTGAGCAATGTTAC 59.728 37.037 5.70 0.00 45.16 2.50
3455 3908 7.307694 CAGATGTTTTAGCTTGAGCAATGTTA 58.692 34.615 5.70 0.00 45.16 2.41
3456 3909 6.154445 CAGATGTTTTAGCTTGAGCAATGTT 58.846 36.000 5.70 0.00 45.16 2.71
3457 3910 5.336213 CCAGATGTTTTAGCTTGAGCAATGT 60.336 40.000 5.70 0.00 45.16 2.71
3458 3911 5.100259 CCAGATGTTTTAGCTTGAGCAATG 58.900 41.667 5.70 0.00 45.16 2.82
3459 3912 4.381292 GCCAGATGTTTTAGCTTGAGCAAT 60.381 41.667 5.70 0.00 45.16 3.56
3460 3913 3.057315 GCCAGATGTTTTAGCTTGAGCAA 60.057 43.478 5.70 0.00 45.16 3.91
3461 3914 2.489329 GCCAGATGTTTTAGCTTGAGCA 59.511 45.455 5.70 0.00 45.16 4.26
3462 3915 2.489329 TGCCAGATGTTTTAGCTTGAGC 59.511 45.455 0.00 0.00 42.49 4.26
3463 3916 4.978083 ATGCCAGATGTTTTAGCTTGAG 57.022 40.909 0.00 0.00 0.00 3.02
3464 3917 4.158394 GGAATGCCAGATGTTTTAGCTTGA 59.842 41.667 0.00 0.00 0.00 3.02
3465 3918 4.082081 TGGAATGCCAGATGTTTTAGCTTG 60.082 41.667 0.00 0.00 39.92 4.01
3466 3919 4.088634 TGGAATGCCAGATGTTTTAGCTT 58.911 39.130 0.00 0.00 39.92 3.74
3467 3920 3.700538 TGGAATGCCAGATGTTTTAGCT 58.299 40.909 0.00 0.00 39.92 3.32
3552 4006 2.332312 AAAAAGGGGGCGTTTTGGGC 62.332 55.000 0.00 0.00 32.87 5.36
3553 4007 0.250124 GAAAAAGGGGGCGTTTTGGG 60.250 55.000 0.00 0.00 32.87 4.12
3555 4009 2.142319 CATGAAAAAGGGGGCGTTTTG 58.858 47.619 0.00 0.00 32.87 2.44
3559 4013 1.155155 ACCATGAAAAAGGGGGCGT 59.845 52.632 0.00 0.00 32.41 5.68
3560 4014 1.184970 ACACCATGAAAAAGGGGGCG 61.185 55.000 0.00 0.00 36.19 6.13
3561 4015 1.001974 GAACACCATGAAAAAGGGGGC 59.998 52.381 0.00 0.00 36.19 5.80
3562 4016 2.299867 CAGAACACCATGAAAAAGGGGG 59.700 50.000 0.00 0.00 39.82 5.40
3572 4026 1.726791 GAGTGCGTACAGAACACCATG 59.273 52.381 6.38 0.00 34.83 3.66
3587 4041 1.003116 GCATGTGGATTCATCGAGTGC 60.003 52.381 0.00 0.00 0.00 4.40
3671 4125 7.320443 TCCAATCTTTATTGAATTCAGTCCG 57.680 36.000 6.74 0.00 44.50 4.79
3721 4175 9.791820 GTTGGTTAGCCGTATAATTGTAAAAAT 57.208 29.630 0.00 0.00 37.67 1.82
3728 4184 5.473796 AACGTTGGTTAGCCGTATAATTG 57.526 39.130 0.00 0.00 37.67 2.32
3747 4203 6.614592 CCGTTTTCGCAATAAATATGAAACG 58.385 36.000 10.09 10.09 42.58 3.60
3763 4220 3.742369 TGTAGGACTTTTAGCCGTTTTCG 59.258 43.478 0.00 0.00 43.67 3.46
3808 4265 9.448438 ACTATCACAATAATTTAGTTGAGTGCA 57.552 29.630 5.31 0.00 0.00 4.57
3809 4266 9.922305 GACTATCACAATAATTTAGTTGAGTGC 57.078 33.333 5.31 0.00 0.00 4.40
3824 4281 9.911788 ATCCATTTTAAGTCAGACTATCACAAT 57.088 29.630 2.64 0.00 0.00 2.71
3825 4282 9.166173 CATCCATTTTAAGTCAGACTATCACAA 57.834 33.333 2.64 0.00 0.00 3.33
3826 4283 8.539544 TCATCCATTTTAAGTCAGACTATCACA 58.460 33.333 2.64 0.00 0.00 3.58
3827 4284 8.948631 TCATCCATTTTAAGTCAGACTATCAC 57.051 34.615 2.64 0.00 0.00 3.06
3831 4288 8.150945 GCCTATCATCCATTTTAAGTCAGACTA 58.849 37.037 2.64 0.00 0.00 2.59
3832 4289 6.995091 GCCTATCATCCATTTTAAGTCAGACT 59.005 38.462 0.00 0.00 0.00 3.24
3833 4290 6.995091 AGCCTATCATCCATTTTAAGTCAGAC 59.005 38.462 0.00 0.00 0.00 3.51
3834 4291 7.141758 AGCCTATCATCCATTTTAAGTCAGA 57.858 36.000 0.00 0.00 0.00 3.27
3835 4292 8.153550 AGTAGCCTATCATCCATTTTAAGTCAG 58.846 37.037 0.00 0.00 0.00 3.51
3836 4293 8.034313 AGTAGCCTATCATCCATTTTAAGTCA 57.966 34.615 0.00 0.00 0.00 3.41
3837 4294 8.150945 TGAGTAGCCTATCATCCATTTTAAGTC 58.849 37.037 0.00 0.00 0.00 3.01
3838 4295 8.034313 TGAGTAGCCTATCATCCATTTTAAGT 57.966 34.615 0.00 0.00 0.00 2.24
3839 4296 8.370940 TCTGAGTAGCCTATCATCCATTTTAAG 58.629 37.037 0.00 0.00 0.00 1.85
3840 4297 8.262601 TCTGAGTAGCCTATCATCCATTTTAA 57.737 34.615 0.00 0.00 0.00 1.52
3841 4298 7.855784 TCTGAGTAGCCTATCATCCATTTTA 57.144 36.000 0.00 0.00 0.00 1.52
3842 4299 6.753913 TCTGAGTAGCCTATCATCCATTTT 57.246 37.500 0.00 0.00 0.00 1.82
3843 4300 6.499699 TGATCTGAGTAGCCTATCATCCATTT 59.500 38.462 0.00 0.00 0.00 2.32
3844 4301 6.021672 TGATCTGAGTAGCCTATCATCCATT 58.978 40.000 0.00 0.00 0.00 3.16
3845 4302 5.587861 TGATCTGAGTAGCCTATCATCCAT 58.412 41.667 0.00 0.00 0.00 3.41
3846 4303 5.003096 TGATCTGAGTAGCCTATCATCCA 57.997 43.478 0.00 0.00 0.00 3.41
3847 4304 5.991933 TTGATCTGAGTAGCCTATCATCC 57.008 43.478 0.00 0.00 0.00 3.51
3848 4305 8.965819 TCTTATTGATCTGAGTAGCCTATCATC 58.034 37.037 0.00 0.00 0.00 2.92
3849 4306 8.891985 TCTTATTGATCTGAGTAGCCTATCAT 57.108 34.615 0.00 0.00 0.00 2.45
3850 4307 8.712228 TTCTTATTGATCTGAGTAGCCTATCA 57.288 34.615 0.00 0.00 0.00 2.15
3853 4310 9.988815 GAATTTCTTATTGATCTGAGTAGCCTA 57.011 33.333 0.00 0.00 0.00 3.93
3854 4311 7.936301 GGAATTTCTTATTGATCTGAGTAGCCT 59.064 37.037 0.00 0.00 0.00 4.58
3855 4312 7.936301 AGGAATTTCTTATTGATCTGAGTAGCC 59.064 37.037 0.00 0.00 0.00 3.93
3856 4313 8.900983 AGGAATTTCTTATTGATCTGAGTAGC 57.099 34.615 0.00 0.00 0.00 3.58
3873 4330 4.486090 GCTCCCGAAAAAGAAGGAATTTC 58.514 43.478 0.00 0.00 35.97 2.17
3874 4331 3.258372 GGCTCCCGAAAAAGAAGGAATTT 59.742 43.478 0.00 0.00 0.00 1.82
3875 4332 2.826128 GGCTCCCGAAAAAGAAGGAATT 59.174 45.455 0.00 0.00 0.00 2.17
3876 4333 2.447443 GGCTCCCGAAAAAGAAGGAAT 58.553 47.619 0.00 0.00 0.00 3.01
3877 4334 1.546998 GGGCTCCCGAAAAAGAAGGAA 60.547 52.381 0.00 0.00 0.00 3.36
3878 4335 0.037734 GGGCTCCCGAAAAAGAAGGA 59.962 55.000 0.00 0.00 0.00 3.36
3879 4336 0.251165 TGGGCTCCCGAAAAAGAAGG 60.251 55.000 0.00 0.00 39.42 3.46
3880 4337 1.839424 ATGGGCTCCCGAAAAAGAAG 58.161 50.000 0.00 0.00 39.42 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.