Multiple sequence alignment - TraesCS4D01G358900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G358900 chr4D 100.000 2950 0 0 1 2950 506341266 506338317 0.000000e+00 5448.0
1 TraesCS4D01G358900 chr3B 89.971 1386 89 21 664 2031 799983535 799982182 0.000000e+00 1744.0
2 TraesCS4D01G358900 chr3B 86.853 928 72 19 740 1641 799860984 799860081 0.000000e+00 992.0
3 TraesCS4D01G358900 chr3B 89.983 589 57 2 1143 1730 799926927 799927514 0.000000e+00 760.0
4 TraesCS4D01G358900 chr3B 89.981 539 45 5 2306 2838 799859065 799858530 0.000000e+00 688.0
5 TraesCS4D01G358900 chr3B 86.318 592 72 6 1324 1912 800000282 799999697 1.150000e-178 636.0
6 TraesCS4D01G358900 chr3B 82.171 258 27 13 1787 2033 799927517 799927766 1.390000e-48 204.0
7 TraesCS4D01G358900 chr3B 84.211 190 17 5 744 922 799971322 799971135 3.910000e-39 172.0
8 TraesCS4D01G358900 chr3B 93.694 111 7 0 475 585 799983715 799983605 1.820000e-37 167.0
9 TraesCS4D01G358900 chr3B 91.579 95 6 2 1912 2005 799859414 799859321 2.390000e-26 130.0
10 TraesCS4D01G358900 chr4B 89.771 1398 77 37 664 2031 662471454 662470093 0.000000e+00 1729.0
11 TraesCS4D01G358900 chr4B 85.354 990 91 29 773 1733 662459275 662458311 0.000000e+00 976.0
12 TraesCS4D01G358900 chr4B 87.346 814 83 13 1112 1912 662536741 662535935 0.000000e+00 915.0
13 TraesCS4D01G358900 chr4B 89.683 504 47 3 1139 1641 664759239 664759738 3.210000e-179 638.0
14 TraesCS4D01G358900 chr4B 82.673 404 19 20 383 785 662459713 662459360 7.940000e-81 311.0
15 TraesCS4D01G358900 chr4B 93.035 201 12 2 386 585 662471723 662471524 2.880000e-75 292.0
16 TraesCS4D01G358900 chr4B 85.039 254 18 8 282 534 662539754 662539520 1.060000e-59 241.0
17 TraesCS4D01G358900 chr4B 80.620 258 26 11 664 919 662537133 662536898 8.400000e-41 178.0
18 TraesCS4D01G358900 chr5A 88.916 1245 73 22 889 2085 702632823 702631596 0.000000e+00 1474.0
19 TraesCS4D01G358900 chr5A 90.769 520 45 1 1136 1652 704342966 704343485 0.000000e+00 691.0
20 TraesCS4D01G358900 chr5A 88.750 560 61 2 2280 2838 362292967 362292409 0.000000e+00 684.0
21 TraesCS4D01G358900 chr5A 90.180 499 35 6 38 530 702633993 702633503 3.210000e-179 638.0
22 TraesCS4D01G358900 chr5A 88.917 397 40 2 1080 1476 702605739 702605347 1.230000e-133 486.0
23 TraesCS4D01G358900 chr5A 91.077 325 17 5 569 893 702633498 702633186 2.100000e-116 429.0
24 TraesCS4D01G358900 chr5A 79.812 426 49 14 1499 1909 702597404 702597001 2.900000e-70 276.0
25 TraesCS4D01G358900 chr7A 89.165 563 58 3 2278 2838 705625861 705625300 0.000000e+00 699.0
26 TraesCS4D01G358900 chr1B 88.929 560 61 1 2279 2838 439855906 439855348 0.000000e+00 689.0
27 TraesCS4D01G358900 chr7D 83.019 106 17 1 2517 2622 553355855 553355751 8.700000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G358900 chr4D 506338317 506341266 2949 True 5448.000000 5448 100.000000 1 2950 1 chr4D.!!$R1 2949
1 TraesCS4D01G358900 chr3B 799982182 799983715 1533 True 955.500000 1744 91.832500 475 2031 2 chr3B.!!$R4 1556
2 TraesCS4D01G358900 chr3B 799999697 800000282 585 True 636.000000 636 86.318000 1324 1912 1 chr3B.!!$R2 588
3 TraesCS4D01G358900 chr3B 799858530 799860984 2454 True 603.333333 992 89.471000 740 2838 3 chr3B.!!$R3 2098
4 TraesCS4D01G358900 chr3B 799926927 799927766 839 False 482.000000 760 86.077000 1143 2033 2 chr3B.!!$F1 890
5 TraesCS4D01G358900 chr4B 662470093 662471723 1630 True 1010.500000 1729 91.403000 386 2031 2 chr4B.!!$R2 1645
6 TraesCS4D01G358900 chr4B 662458311 662459713 1402 True 643.500000 976 84.013500 383 1733 2 chr4B.!!$R1 1350
7 TraesCS4D01G358900 chr4B 662535935 662539754 3819 True 444.666667 915 84.335000 282 1912 3 chr4B.!!$R3 1630
8 TraesCS4D01G358900 chr5A 702631596 702633993 2397 True 847.000000 1474 90.057667 38 2085 3 chr5A.!!$R4 2047
9 TraesCS4D01G358900 chr5A 704342966 704343485 519 False 691.000000 691 90.769000 1136 1652 1 chr5A.!!$F1 516
10 TraesCS4D01G358900 chr5A 362292409 362292967 558 True 684.000000 684 88.750000 2280 2838 1 chr5A.!!$R1 558
11 TraesCS4D01G358900 chr7A 705625300 705625861 561 True 699.000000 699 89.165000 2278 2838 1 chr7A.!!$R1 560
12 TraesCS4D01G358900 chr1B 439855348 439855906 558 True 689.000000 689 88.929000 2279 2838 1 chr1B.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 443 0.392461 TGACTAACCAATCAGCCGGC 60.392 55.0 21.89 21.89 0.0 6.13 F
561 2855 0.682852 CGTGGTGTTCTTCCCCTGTA 59.317 55.0 0.00 0.00 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 4613 0.671781 ACGCGCATCTTCTTCTTGCT 60.672 50.0 5.73 0.0 34.23 3.91 R
2057 5355 1.318158 CCTTGATGGGCTGCTTCACC 61.318 60.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.287059 GCAACTGCAACCAAACACG 58.713 52.632 0.00 0.00 41.59 4.49
35 36 1.751536 GCAACTGCAACCAAACACGC 61.752 55.000 0.00 0.00 41.59 5.34
36 37 1.140804 AACTGCAACCAAACACGCC 59.859 52.632 0.00 0.00 0.00 5.68
64 65 6.612863 AGGGCCTCATTATTTCTAAAAATGCT 59.387 34.615 0.00 0.00 35.84 3.79
140 143 8.821686 AACTAATGATGATGGTTAATTGTCCA 57.178 30.769 6.01 6.01 38.14 4.02
141 144 8.455903 ACTAATGATGATGGTTAATTGTCCAG 57.544 34.615 8.85 0.00 37.14 3.86
143 146 5.449297 TGATGATGGTTAATTGTCCAGGA 57.551 39.130 8.85 0.00 37.14 3.86
158 161 2.242965 TCCAGGAACGTATAGAGGGTCA 59.757 50.000 0.00 0.00 0.00 4.02
162 165 5.480772 CCAGGAACGTATAGAGGGTCATATT 59.519 44.000 0.00 0.00 0.00 1.28
193 199 1.466856 GCTGCAGATGATTGAACCCA 58.533 50.000 20.43 0.00 0.00 4.51
194 200 1.820519 GCTGCAGATGATTGAACCCAA 59.179 47.619 20.43 0.00 36.61 4.12
195 201 2.231964 GCTGCAGATGATTGAACCCAAA 59.768 45.455 20.43 0.00 35.67 3.28
197 203 4.491676 CTGCAGATGATTGAACCCAAAAG 58.508 43.478 8.42 0.00 35.67 2.27
201 207 5.990996 GCAGATGATTGAACCCAAAAGAAAA 59.009 36.000 0.00 0.00 35.67 2.29
203 209 7.307573 GCAGATGATTGAACCCAAAAGAAAAAG 60.308 37.037 0.00 0.00 35.67 2.27
255 262 2.032680 TGGTACGCTTGGAATTAGCC 57.967 50.000 0.00 0.00 35.18 3.93
261 268 1.393603 GCTTGGAATTAGCCTGGACC 58.606 55.000 0.00 0.00 32.45 4.46
263 270 2.648059 CTTGGAATTAGCCTGGACCAG 58.352 52.381 15.15 15.15 0.00 4.00
295 302 2.755469 TCGCCACGTACTACCCCC 60.755 66.667 0.00 0.00 0.00 5.40
300 307 1.066918 CACGTACTACCCCCGATGC 59.933 63.158 0.00 0.00 0.00 3.91
302 309 2.732658 GTACTACCCCCGATGCCG 59.267 66.667 0.00 0.00 0.00 5.69
413 420 4.034742 GCGACAAAGCTAAATCCGGAAATA 59.965 41.667 9.01 3.54 0.00 1.40
436 443 0.392461 TGACTAACCAATCAGCCGGC 60.392 55.000 21.89 21.89 0.00 6.13
439 447 1.153449 TAACCAATCAGCCGGCGAG 60.153 57.895 23.20 18.47 0.00 5.03
561 2855 0.682852 CGTGGTGTTCTTCCCCTGTA 59.317 55.000 0.00 0.00 0.00 2.74
654 2957 4.382320 GTGTCGCCTACGCCCCAA 62.382 66.667 0.00 0.00 39.84 4.12
659 2962 1.300697 CGCCTACGCCCCAATAGAC 60.301 63.158 0.00 0.00 0.00 2.59
1078 3931 2.163818 AGACCAATCGCGAGTGAAAA 57.836 45.000 35.37 0.00 0.00 2.29
1701 4581 2.863153 CGCAGAGGCCAAAAGACG 59.137 61.111 5.01 0.00 36.38 4.18
1725 4605 2.184579 GCTTCTCGACGGGGAAGG 59.815 66.667 22.71 11.65 39.25 3.46
1733 4613 4.974438 ACGGGGAAGGCCAGGTGA 62.974 66.667 5.01 0.00 35.15 4.02
1969 5267 5.587443 ACGTAATACATAGGGACTTTTTGGC 59.413 40.000 0.00 0.00 41.75 4.52
1997 5295 2.079925 ACGACGTGGTAGGAGTACTTC 58.920 52.381 0.00 0.00 0.00 3.01
2044 5342 2.770164 AGCTACGCTCAGATGGTTTT 57.230 45.000 0.00 0.00 30.62 2.43
2045 5343 3.059352 AGCTACGCTCAGATGGTTTTT 57.941 42.857 0.00 0.00 30.62 1.94
2046 5344 4.202245 AGCTACGCTCAGATGGTTTTTA 57.798 40.909 0.00 0.00 30.62 1.52
2047 5345 4.770795 AGCTACGCTCAGATGGTTTTTAT 58.229 39.130 0.00 0.00 30.62 1.40
2051 5349 7.335924 AGCTACGCTCAGATGGTTTTTATTTTA 59.664 33.333 0.00 0.00 30.62 1.52
2085 5383 2.755103 CAGCCCATCAAGGTTTAAGTCC 59.245 50.000 0.00 0.00 34.66 3.85
2086 5384 1.743394 GCCCATCAAGGTTTAAGTCCG 59.257 52.381 0.00 0.00 34.66 4.79
2087 5385 2.617021 GCCCATCAAGGTTTAAGTCCGA 60.617 50.000 0.00 0.00 34.66 4.55
2088 5386 3.886123 CCCATCAAGGTTTAAGTCCGAT 58.114 45.455 0.00 0.00 34.66 4.18
2089 5387 3.627577 CCCATCAAGGTTTAAGTCCGATG 59.372 47.826 0.00 0.00 34.66 3.84
2090 5388 4.261801 CCATCAAGGTTTAAGTCCGATGT 58.738 43.478 0.00 0.00 0.00 3.06
2091 5389 5.424757 CCATCAAGGTTTAAGTCCGATGTA 58.575 41.667 0.00 0.00 0.00 2.29
2092 5390 5.293569 CCATCAAGGTTTAAGTCCGATGTAC 59.706 44.000 0.00 0.00 0.00 2.90
2093 5391 5.471556 TCAAGGTTTAAGTCCGATGTACA 57.528 39.130 0.00 0.00 0.00 2.90
2094 5392 5.232463 TCAAGGTTTAAGTCCGATGTACAC 58.768 41.667 0.00 0.00 0.00 2.90
2095 5393 4.877378 AGGTTTAAGTCCGATGTACACA 57.123 40.909 0.00 0.00 0.00 3.72
2096 5394 4.563061 AGGTTTAAGTCCGATGTACACAC 58.437 43.478 0.00 0.00 0.00 3.82
2097 5395 4.282703 AGGTTTAAGTCCGATGTACACACT 59.717 41.667 0.00 0.00 0.00 3.55
2098 5396 4.992951 GGTTTAAGTCCGATGTACACACTT 59.007 41.667 0.00 7.10 0.00 3.16
2099 5397 5.467735 GGTTTAAGTCCGATGTACACACTTT 59.532 40.000 13.57 2.06 0.00 2.66
2100 5398 6.360329 GTTTAAGTCCGATGTACACACTTTG 58.640 40.000 13.57 0.00 0.00 2.77
2101 5399 3.746045 AGTCCGATGTACACACTTTGT 57.254 42.857 0.00 0.00 42.84 2.83
2102 5400 4.067972 AGTCCGATGTACACACTTTGTT 57.932 40.909 0.00 0.00 39.91 2.83
2103 5401 3.807622 AGTCCGATGTACACACTTTGTTG 59.192 43.478 0.00 0.00 39.91 3.33
2104 5402 3.805422 GTCCGATGTACACACTTTGTTGA 59.195 43.478 0.00 0.00 39.91 3.18
2105 5403 4.055360 TCCGATGTACACACTTTGTTGAG 58.945 43.478 0.00 0.00 39.91 3.02
2106 5404 3.807622 CCGATGTACACACTTTGTTGAGT 59.192 43.478 0.00 0.00 39.91 3.41
2107 5405 4.272504 CCGATGTACACACTTTGTTGAGTT 59.727 41.667 0.00 0.00 39.91 3.01
2108 5406 5.220777 CCGATGTACACACTTTGTTGAGTTT 60.221 40.000 0.00 0.00 39.91 2.66
2109 5407 6.018588 CCGATGTACACACTTTGTTGAGTTTA 60.019 38.462 0.00 0.00 39.91 2.01
2110 5408 7.307751 CCGATGTACACACTTTGTTGAGTTTAT 60.308 37.037 0.00 0.00 39.91 1.40
2111 5409 8.067784 CGATGTACACACTTTGTTGAGTTTATT 58.932 33.333 0.00 0.00 39.91 1.40
2114 5412 9.163899 TGTACACACTTTGTTGAGTTTATTACA 57.836 29.630 0.00 0.00 39.91 2.41
2115 5413 9.646336 GTACACACTTTGTTGAGTTTATTACAG 57.354 33.333 0.00 0.00 39.91 2.74
2116 5414 8.276252 ACACACTTTGTTGAGTTTATTACAGT 57.724 30.769 0.00 0.00 33.09 3.55
2117 5415 9.386010 ACACACTTTGTTGAGTTTATTACAGTA 57.614 29.630 0.00 0.00 33.09 2.74
2135 5433 6.971726 ACAGTATATACGTTCAATGGGAGA 57.028 37.500 7.23 0.00 0.00 3.71
2142 5440 1.726791 CGTTCAATGGGAGAAGACGTG 59.273 52.381 0.00 0.00 0.00 4.49
2148 5446 4.221924 TCAATGGGAGAAGACGTGTTGATA 59.778 41.667 1.19 0.00 0.00 2.15
2163 5461 9.304731 GACGTGTTGATATATGGTTACTTTGTA 57.695 33.333 0.00 0.00 0.00 2.41
2210 5508 7.682787 ATGGTTACTTTGATCCAGTATCTCT 57.317 36.000 3.36 0.00 35.45 3.10
2213 5511 8.642432 TGGTTACTTTGATCCAGTATCTCTATG 58.358 37.037 3.36 0.00 35.45 2.23
2224 5562 8.572855 TCCAGTATCTCTATGATGAGTGTATG 57.427 38.462 0.00 0.00 36.65 2.39
2226 5564 9.454859 CCAGTATCTCTATGATGAGTGTATGTA 57.545 37.037 0.00 0.00 36.65 2.29
2254 5592 0.036732 TGAGGGTCTGTGATTGTGCC 59.963 55.000 0.00 0.00 0.00 5.01
2255 5593 0.678048 GAGGGTCTGTGATTGTGCCC 60.678 60.000 0.00 0.00 36.46 5.36
2265 5603 3.146066 GTGATTGTGCCCTGTGTTAGAA 58.854 45.455 0.00 0.00 0.00 2.10
2266 5604 3.189287 GTGATTGTGCCCTGTGTTAGAAG 59.811 47.826 0.00 0.00 0.00 2.85
2267 5605 1.604604 TTGTGCCCTGTGTTAGAAGC 58.395 50.000 0.00 0.00 0.00 3.86
2268 5606 0.764890 TGTGCCCTGTGTTAGAAGCT 59.235 50.000 0.00 0.00 0.00 3.74
2269 5607 1.974957 TGTGCCCTGTGTTAGAAGCTA 59.025 47.619 0.00 0.00 0.00 3.32
2270 5608 2.571653 TGTGCCCTGTGTTAGAAGCTAT 59.428 45.455 0.00 0.00 0.00 2.97
2271 5609 3.772572 TGTGCCCTGTGTTAGAAGCTATA 59.227 43.478 0.00 0.00 0.00 1.31
2272 5610 4.141937 TGTGCCCTGTGTTAGAAGCTATAG 60.142 45.833 0.00 0.00 0.00 1.31
2275 5613 5.163405 TGCCCTGTGTTAGAAGCTATAGAAG 60.163 44.000 3.21 0.00 0.00 2.85
2298 5636 4.456566 GCAAGGGAAATACTTACCGTCAAA 59.543 41.667 0.00 0.00 41.04 2.69
2299 5637 5.048573 GCAAGGGAAATACTTACCGTCAAAA 60.049 40.000 0.00 0.00 41.04 2.44
2304 5642 6.205270 GGGAAATACTTACCGTCAAAAGACAA 59.795 38.462 0.00 0.00 0.00 3.18
2338 5743 4.481112 CCGCCACCTCATTTGCGC 62.481 66.667 0.00 0.00 45.28 6.09
2381 5786 0.538057 CCACTGCTGTCACACCCAAT 60.538 55.000 0.00 0.00 0.00 3.16
2434 5840 2.170187 CCATGAGTCTTCTTCCCTGGAG 59.830 54.545 0.00 0.00 0.00 3.86
2462 5868 1.229428 TGCTTTCTTCTCGCCAACAG 58.771 50.000 0.00 0.00 0.00 3.16
2499 5905 2.687935 AGTTGTCGCCAAAAGTCACAAT 59.312 40.909 0.00 0.00 30.94 2.71
2504 5910 2.100584 TCGCCAAAAGTCACAATTGCTT 59.899 40.909 5.05 0.00 0.00 3.91
2515 5921 2.093869 CACAATTGCTTATGCCCTTGCT 60.094 45.455 5.05 0.20 38.71 3.91
2552 5958 2.706071 GGAGAGGAGGATGGGGGT 59.294 66.667 0.00 0.00 0.00 4.95
2572 5978 1.602237 CGGTTGTAGCCAGGGTCAT 59.398 57.895 0.00 0.00 0.00 3.06
2608 6014 4.778143 GCCACCCGCTTCCATCGT 62.778 66.667 0.00 0.00 0.00 3.73
2612 6018 2.885644 CCCGCTTCCATCGTGACG 60.886 66.667 0.00 0.00 0.00 4.35
2665 6071 1.735376 GAGGAGGATAACGGCGAGCA 61.735 60.000 16.62 0.00 0.00 4.26
2701 6107 0.459237 CAGCGTCGCTCTTTCCTCAT 60.459 55.000 18.76 0.00 36.40 2.90
2705 6111 0.179070 GTCGCTCTTTCCTCATCCCC 60.179 60.000 0.00 0.00 0.00 4.81
2706 6112 0.617535 TCGCTCTTTCCTCATCCCCA 60.618 55.000 0.00 0.00 0.00 4.96
2781 6188 4.338118 TCTTCCGTGTTGCAAGAAAGATTT 59.662 37.500 0.00 0.00 0.00 2.17
2797 6204 8.316640 AGAAAGATTTCTGTAACATCAGTGAC 57.683 34.615 7.02 0.00 45.27 3.67
2858 6270 3.737559 AAAACAGCCTGATGGGATACA 57.262 42.857 0.00 0.00 37.23 2.29
2859 6271 3.959495 AAACAGCCTGATGGGATACAT 57.041 42.857 0.00 0.00 44.18 2.29
2867 6279 2.376808 GATGGGATACATCGGCTGAG 57.623 55.000 0.00 0.00 45.87 3.35
2868 6280 1.620819 GATGGGATACATCGGCTGAGT 59.379 52.381 0.00 2.16 45.87 3.41
2869 6281 2.375014 TGGGATACATCGGCTGAGTA 57.625 50.000 0.00 4.45 39.74 2.59
2870 6282 2.889512 TGGGATACATCGGCTGAGTAT 58.110 47.619 13.98 13.98 39.74 2.12
2871 6283 2.826128 TGGGATACATCGGCTGAGTATC 59.174 50.000 23.37 23.37 41.97 2.24
2872 6284 2.159366 GGGATACATCGGCTGAGTATCG 60.159 54.545 23.90 4.98 43.03 2.92
2873 6285 2.488545 GGATACATCGGCTGAGTATCGT 59.511 50.000 23.90 11.59 43.03 3.73
2874 6286 3.426426 GGATACATCGGCTGAGTATCGTC 60.426 52.174 23.90 15.22 43.03 4.20
2875 6287 1.681538 ACATCGGCTGAGTATCGTCT 58.318 50.000 0.00 0.00 38.61 4.18
2876 6288 1.335182 ACATCGGCTGAGTATCGTCTG 59.665 52.381 0.00 0.00 38.61 3.51
2877 6289 1.604278 CATCGGCTGAGTATCGTCTGA 59.396 52.381 0.00 0.00 38.61 3.27
2878 6290 1.300481 TCGGCTGAGTATCGTCTGAG 58.700 55.000 0.00 0.00 38.61 3.35
2879 6291 1.134491 TCGGCTGAGTATCGTCTGAGA 60.134 52.381 0.00 0.00 38.61 3.27
2880 6292 1.262950 CGGCTGAGTATCGTCTGAGAG 59.737 57.143 0.00 0.00 38.61 3.20
2881 6293 1.606668 GGCTGAGTATCGTCTGAGAGG 59.393 57.143 0.00 0.00 38.61 3.69
2882 6294 1.001815 GCTGAGTATCGTCTGAGAGGC 60.002 57.143 0.00 0.00 38.61 4.70
2883 6295 1.262950 CTGAGTATCGTCTGAGAGGCG 59.737 57.143 0.00 0.00 46.14 5.52
2884 6296 0.589223 GAGTATCGTCTGAGAGGCGG 59.411 60.000 0.00 0.00 44.63 6.13
2885 6297 1.008309 GTATCGTCTGAGAGGCGGC 60.008 63.158 0.00 0.00 44.63 6.53
2886 6298 2.194212 TATCGTCTGAGAGGCGGCC 61.194 63.158 12.11 12.11 44.63 6.13
2887 6299 2.904178 TATCGTCTGAGAGGCGGCCA 62.904 60.000 23.09 0.00 44.63 5.36
2888 6300 4.504916 CGTCTGAGAGGCGGCCAG 62.505 72.222 23.09 9.89 40.10 4.85
2889 6301 4.154347 GTCTGAGAGGCGGCCAGG 62.154 72.222 23.09 6.11 0.00 4.45
2897 6309 3.787001 GGCGGCCAGGCTCTAGTT 61.787 66.667 15.62 0.00 42.90 2.24
2898 6310 2.269241 GCGGCCAGGCTCTAGTTT 59.731 61.111 12.43 0.00 0.00 2.66
2899 6311 1.815840 GCGGCCAGGCTCTAGTTTC 60.816 63.158 12.43 0.00 0.00 2.78
2900 6312 1.901085 CGGCCAGGCTCTAGTTTCT 59.099 57.895 12.43 0.00 0.00 2.52
2901 6313 0.179097 CGGCCAGGCTCTAGTTTCTC 60.179 60.000 12.43 0.00 0.00 2.87
2902 6314 0.179234 GGCCAGGCTCTAGTTTCTCC 59.821 60.000 12.43 0.00 0.00 3.71
2903 6315 0.179234 GCCAGGCTCTAGTTTCTCCC 59.821 60.000 3.29 0.00 0.00 4.30
2904 6316 0.833949 CCAGGCTCTAGTTTCTCCCC 59.166 60.000 0.00 0.00 0.00 4.81
2905 6317 0.833949 CAGGCTCTAGTTTCTCCCCC 59.166 60.000 0.00 0.00 0.00 5.40
2906 6318 0.719623 AGGCTCTAGTTTCTCCCCCT 59.280 55.000 0.00 0.00 0.00 4.79
2907 6319 1.124780 GGCTCTAGTTTCTCCCCCTC 58.875 60.000 0.00 0.00 0.00 4.30
2908 6320 1.124780 GCTCTAGTTTCTCCCCCTCC 58.875 60.000 0.00 0.00 0.00 4.30
2909 6321 1.343580 GCTCTAGTTTCTCCCCCTCCT 60.344 57.143 0.00 0.00 0.00 3.69
2910 6322 2.673258 CTCTAGTTTCTCCCCCTCCTC 58.327 57.143 0.00 0.00 0.00 3.71
2911 6323 1.291335 TCTAGTTTCTCCCCCTCCTCC 59.709 57.143 0.00 0.00 0.00 4.30
2912 6324 0.342313 TAGTTTCTCCCCCTCCTCCC 59.658 60.000 0.00 0.00 0.00 4.30
2913 6325 1.229853 GTTTCTCCCCCTCCTCCCA 60.230 63.158 0.00 0.00 0.00 4.37
2914 6326 1.229853 TTTCTCCCCCTCCTCCCAC 60.230 63.158 0.00 0.00 0.00 4.61
2915 6327 3.618855 TTCTCCCCCTCCTCCCACG 62.619 68.421 0.00 0.00 0.00 4.94
2916 6328 4.075793 CTCCCCCTCCTCCCACGA 62.076 72.222 0.00 0.00 0.00 4.35
2917 6329 4.393778 TCCCCCTCCTCCCACGAC 62.394 72.222 0.00 0.00 0.00 4.34
2921 6333 3.827898 CCTCCTCCCACGACGCTC 61.828 72.222 0.00 0.00 0.00 5.03
2922 6334 3.827898 CTCCTCCCACGACGCTCC 61.828 72.222 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.751536 GCGTGTTTGGTTGCAGTTGC 61.752 55.000 0.00 0.00 42.50 4.17
17 18 1.145162 GGCGTGTTTGGTTGCAGTTG 61.145 55.000 0.00 0.00 0.00 3.16
18 19 1.140804 GGCGTGTTTGGTTGCAGTT 59.859 52.632 0.00 0.00 0.00 3.16
19 20 2.049185 TGGCGTGTTTGGTTGCAGT 61.049 52.632 0.00 0.00 0.00 4.40
20 21 1.588667 GTGGCGTGTTTGGTTGCAG 60.589 57.895 0.00 0.00 0.00 4.41
21 22 2.276863 CTGTGGCGTGTTTGGTTGCA 62.277 55.000 0.00 0.00 0.00 4.08
22 23 1.588667 CTGTGGCGTGTTTGGTTGC 60.589 57.895 0.00 0.00 0.00 4.17
23 24 1.065600 CCTGTGGCGTGTTTGGTTG 59.934 57.895 0.00 0.00 0.00 3.77
24 25 2.124693 CCCTGTGGCGTGTTTGGTT 61.125 57.895 0.00 0.00 0.00 3.67
25 26 2.518349 CCCTGTGGCGTGTTTGGT 60.518 61.111 0.00 0.00 0.00 3.67
35 36 3.303351 AGAAATAATGAGGCCCTGTGG 57.697 47.619 0.00 0.00 0.00 4.17
36 37 6.773976 TTTTAGAAATAATGAGGCCCTGTG 57.226 37.500 0.00 0.00 0.00 3.66
103 106 7.202093 CCATCATCATTAGTTCCACTAACCCTA 60.202 40.741 0.00 0.00 42.78 3.53
122 125 5.220854 CGTTCCTGGACAATTAACCATCATC 60.221 44.000 0.00 0.00 35.54 2.92
126 129 4.028993 ACGTTCCTGGACAATTAACCAT 57.971 40.909 0.00 0.00 35.54 3.55
130 133 6.183360 CCCTCTATACGTTCCTGGACAATTAA 60.183 42.308 0.00 0.00 0.00 1.40
131 134 5.303589 CCCTCTATACGTTCCTGGACAATTA 59.696 44.000 0.00 0.00 0.00 1.40
132 135 4.101119 CCCTCTATACGTTCCTGGACAATT 59.899 45.833 0.00 0.00 0.00 2.32
133 136 3.641906 CCCTCTATACGTTCCTGGACAAT 59.358 47.826 0.00 0.00 0.00 2.71
140 143 6.553852 ACAAATATGACCCTCTATACGTTCCT 59.446 38.462 0.00 0.00 0.00 3.36
141 144 6.756221 ACAAATATGACCCTCTATACGTTCC 58.244 40.000 0.00 0.00 0.00 3.62
143 146 7.562135 ACAACAAATATGACCCTCTATACGTT 58.438 34.615 0.00 0.00 0.00 3.99
158 161 2.687425 TGCAGCCGCATACAACAAATAT 59.313 40.909 0.00 0.00 45.36 1.28
162 165 4.071459 TGCAGCCGCATACAACAA 57.929 50.000 0.00 0.00 45.36 2.83
201 207 8.234546 GTCGTTTGTATATTGTTCAATCACCTT 58.765 33.333 1.11 0.00 0.00 3.50
203 209 7.523219 TGTCGTTTGTATATTGTTCAATCACC 58.477 34.615 1.11 0.00 0.00 4.02
272 279 2.398554 TAGTACGTGGCGACCGACC 61.399 63.158 6.14 0.00 0.00 4.79
273 280 1.226128 GTAGTACGTGGCGACCGAC 60.226 63.158 6.14 0.00 0.00 4.79
275 282 2.100991 GGTAGTACGTGGCGACCG 59.899 66.667 0.00 0.00 0.00 4.79
368 375 0.905357 GCCGGATATATGCCTGAGGT 59.095 55.000 5.05 0.00 0.00 3.85
413 420 3.443681 CCGGCTGATTGGTTAGTCAAAAT 59.556 43.478 0.00 0.00 0.00 1.82
436 443 1.379044 AAAATGGCAGCTCCCCTCG 60.379 57.895 0.00 0.00 0.00 4.63
439 447 0.749049 GATGAAAATGGCAGCTCCCC 59.251 55.000 0.00 0.00 0.00 4.81
561 2855 8.603242 ATCTAAAGAAACAATCTAACGTGTGT 57.397 30.769 0.00 0.00 37.42 3.72
591 2885 6.668323 CAACAAGTGGTAGAAAATGTGTAGG 58.332 40.000 0.00 0.00 0.00 3.18
631 2934 1.805945 GCGTAGGCGACACTCCTTG 60.806 63.158 0.00 0.00 41.33 3.61
654 2957 0.657659 CGATTGTCGCGCTCGTCTAT 60.658 55.000 5.56 0.00 36.96 1.98
659 2962 3.315521 CCTCGATTGTCGCGCTCG 61.316 66.667 5.56 7.87 40.21 5.03
1696 4576 3.941657 GAGAAGCAGCCGCCGTCTT 62.942 63.158 0.00 0.00 39.83 3.01
1725 4605 1.163554 CTTCTTCTTGCTCACCTGGC 58.836 55.000 0.00 0.00 0.00 4.85
1733 4613 0.671781 ACGCGCATCTTCTTCTTGCT 60.672 50.000 5.73 0.00 34.23 3.91
1969 5267 4.164294 CTCCTACCACGTCGTCTAAAAAG 58.836 47.826 0.00 0.00 0.00 2.27
1997 5295 2.602217 GCTCACAAAGTAGTTTGCCACG 60.602 50.000 20.59 8.87 46.13 4.94
2041 5339 9.943163 GCTGCTTCACCAAAAATAAAATAAAAA 57.057 25.926 0.00 0.00 0.00 1.94
2042 5340 8.563732 GGCTGCTTCACCAAAAATAAAATAAAA 58.436 29.630 0.00 0.00 0.00 1.52
2043 5341 7.174080 GGGCTGCTTCACCAAAAATAAAATAAA 59.826 33.333 0.00 0.00 0.00 1.40
2044 5342 6.652900 GGGCTGCTTCACCAAAAATAAAATAA 59.347 34.615 0.00 0.00 0.00 1.40
2045 5343 6.169800 GGGCTGCTTCACCAAAAATAAAATA 58.830 36.000 0.00 0.00 0.00 1.40
2046 5344 5.003160 GGGCTGCTTCACCAAAAATAAAAT 58.997 37.500 0.00 0.00 0.00 1.82
2047 5345 4.141620 TGGGCTGCTTCACCAAAAATAAAA 60.142 37.500 0.00 0.00 0.00 1.52
2051 5349 1.422531 TGGGCTGCTTCACCAAAAAT 58.577 45.000 0.00 0.00 0.00 1.82
2057 5355 1.318158 CCTTGATGGGCTGCTTCACC 61.318 60.000 0.00 0.00 0.00 4.02
2064 5362 2.755103 GGACTTAAACCTTGATGGGCTG 59.245 50.000 0.00 0.00 41.11 4.85
2085 5383 5.403897 AACTCAACAAAGTGTGTACATCG 57.596 39.130 0.00 0.00 40.60 3.84
2088 5386 9.163899 TGTAATAAACTCAACAAAGTGTGTACA 57.836 29.630 0.00 0.00 40.60 2.90
2089 5387 9.646336 CTGTAATAAACTCAACAAAGTGTGTAC 57.354 33.333 0.00 0.00 40.60 2.90
2090 5388 9.386010 ACTGTAATAAACTCAACAAAGTGTGTA 57.614 29.630 0.00 0.00 40.60 2.90
2091 5389 8.276252 ACTGTAATAAACTCAACAAAGTGTGT 57.724 30.769 0.00 0.00 44.64 3.72
2109 5407 9.085645 TCTCCCATTGAACGTATATACTGTAAT 57.914 33.333 11.05 5.92 0.00 1.89
2110 5408 8.467963 TCTCCCATTGAACGTATATACTGTAA 57.532 34.615 11.05 4.15 0.00 2.41
2111 5409 8.467963 TTCTCCCATTGAACGTATATACTGTA 57.532 34.615 11.05 0.00 0.00 2.74
2112 5410 6.971726 TCTCCCATTGAACGTATATACTGT 57.028 37.500 11.05 7.72 0.00 3.55
2113 5411 7.595502 GTCTTCTCCCATTGAACGTATATACTG 59.404 40.741 11.05 7.14 0.00 2.74
2114 5412 7.521748 CGTCTTCTCCCATTGAACGTATATACT 60.522 40.741 11.05 0.00 0.00 2.12
2115 5413 6.581542 CGTCTTCTCCCATTGAACGTATATAC 59.418 42.308 2.53 2.53 0.00 1.47
2116 5414 6.263842 ACGTCTTCTCCCATTGAACGTATATA 59.736 38.462 0.00 0.00 28.98 0.86
2117 5415 5.068723 ACGTCTTCTCCCATTGAACGTATAT 59.931 40.000 0.00 0.00 28.98 0.86
2118 5416 4.400251 ACGTCTTCTCCCATTGAACGTATA 59.600 41.667 0.00 0.00 28.98 1.47
2119 5417 3.194968 ACGTCTTCTCCCATTGAACGTAT 59.805 43.478 0.00 0.00 28.98 3.06
2120 5418 2.559668 ACGTCTTCTCCCATTGAACGTA 59.440 45.455 0.00 0.00 28.98 3.57
2121 5419 1.343465 ACGTCTTCTCCCATTGAACGT 59.657 47.619 0.00 0.00 0.00 3.99
2122 5420 1.726791 CACGTCTTCTCCCATTGAACG 59.273 52.381 0.00 0.00 0.00 3.95
2123 5421 2.767505 ACACGTCTTCTCCCATTGAAC 58.232 47.619 0.00 0.00 0.00 3.18
2124 5422 3.138304 CAACACGTCTTCTCCCATTGAA 58.862 45.455 0.00 0.00 0.00 2.69
2125 5423 2.367241 TCAACACGTCTTCTCCCATTGA 59.633 45.455 0.00 0.00 0.00 2.57
2126 5424 2.766313 TCAACACGTCTTCTCCCATTG 58.234 47.619 0.00 0.00 0.00 2.82
2127 5425 3.703001 ATCAACACGTCTTCTCCCATT 57.297 42.857 0.00 0.00 0.00 3.16
2128 5426 6.459066 CATATATCAACACGTCTTCTCCCAT 58.541 40.000 0.00 0.00 0.00 4.00
2129 5427 5.221441 CCATATATCAACACGTCTTCTCCCA 60.221 44.000 0.00 0.00 0.00 4.37
2130 5428 5.221461 ACCATATATCAACACGTCTTCTCCC 60.221 44.000 0.00 0.00 0.00 4.30
2131 5429 5.844004 ACCATATATCAACACGTCTTCTCC 58.156 41.667 0.00 0.00 0.00 3.71
2132 5430 8.136165 AGTAACCATATATCAACACGTCTTCTC 58.864 37.037 0.00 0.00 0.00 2.87
2133 5431 8.008513 AGTAACCATATATCAACACGTCTTCT 57.991 34.615 0.00 0.00 0.00 2.85
2134 5432 8.644318 AAGTAACCATATATCAACACGTCTTC 57.356 34.615 0.00 0.00 0.00 2.87
2135 5433 8.879759 CAAAGTAACCATATATCAACACGTCTT 58.120 33.333 0.00 0.00 0.00 3.01
2175 5473 9.783256 GGATCAAAGTAACCATATAAACACAAC 57.217 33.333 0.00 0.00 0.00 3.32
2176 5474 9.521841 TGGATCAAAGTAACCATATAAACACAA 57.478 29.630 0.00 0.00 0.00 3.33
2177 5475 9.173021 CTGGATCAAAGTAACCATATAAACACA 57.827 33.333 0.00 0.00 0.00 3.72
2178 5476 9.174166 ACTGGATCAAAGTAACCATATAAACAC 57.826 33.333 0.00 0.00 0.00 3.32
2184 5482 9.386122 AGAGATACTGGATCAAAGTAACCATAT 57.614 33.333 10.53 0.00 36.98 1.78
2185 5483 8.783660 AGAGATACTGGATCAAAGTAACCATA 57.216 34.615 10.53 0.00 36.98 2.74
2186 5484 7.682787 AGAGATACTGGATCAAAGTAACCAT 57.317 36.000 10.53 0.00 36.98 3.55
2187 5485 8.642432 CATAGAGATACTGGATCAAAGTAACCA 58.358 37.037 10.53 0.00 36.98 3.67
2188 5486 8.861086 TCATAGAGATACTGGATCAAAGTAACC 58.139 37.037 10.53 6.90 36.98 2.85
2191 5489 9.813826 TCATCATAGAGATACTGGATCAAAGTA 57.186 33.333 2.12 9.27 36.98 2.24
2192 5490 8.718158 TCATCATAGAGATACTGGATCAAAGT 57.282 34.615 2.12 5.70 36.98 2.66
2193 5491 8.805175 ACTCATCATAGAGATACTGGATCAAAG 58.195 37.037 2.12 0.00 38.98 2.77
2194 5492 8.583296 CACTCATCATAGAGATACTGGATCAAA 58.417 37.037 2.12 0.00 38.98 2.69
2195 5493 7.727634 ACACTCATCATAGAGATACTGGATCAA 59.272 37.037 2.12 0.00 38.98 2.57
2213 5511 9.847706 CCTCATATACACTTACATACACTCATC 57.152 37.037 0.00 0.00 0.00 2.92
2224 5562 6.710597 TCACAGACCCTCATATACACTTAC 57.289 41.667 0.00 0.00 0.00 2.34
2226 5564 6.156949 ACAATCACAGACCCTCATATACACTT 59.843 38.462 0.00 0.00 0.00 3.16
2266 5604 7.388224 GGTAAGTATTTCCCTTGCTTCTATAGC 59.612 40.741 0.00 0.00 38.82 2.97
2267 5605 7.599245 CGGTAAGTATTTCCCTTGCTTCTATAG 59.401 40.741 0.00 0.00 30.90 1.31
2268 5606 7.070322 ACGGTAAGTATTTCCCTTGCTTCTATA 59.930 37.037 0.00 0.00 30.90 1.31
2269 5607 6.126854 ACGGTAAGTATTTCCCTTGCTTCTAT 60.127 38.462 0.00 0.00 30.90 1.98
2270 5608 5.188359 ACGGTAAGTATTTCCCTTGCTTCTA 59.812 40.000 0.00 0.00 30.90 2.10
2271 5609 4.019591 ACGGTAAGTATTTCCCTTGCTTCT 60.020 41.667 0.00 0.00 30.90 2.85
2272 5610 4.259356 ACGGTAAGTATTTCCCTTGCTTC 58.741 43.478 0.00 0.00 30.90 3.86
2275 5613 3.602483 TGACGGTAAGTATTTCCCTTGC 58.398 45.455 0.00 0.00 30.90 4.01
2338 5743 4.337060 TCCACTGGACACGCGTCG 62.337 66.667 9.86 8.08 43.61 5.12
2381 5786 2.516448 CGCCTCTGGTGGGATAAGA 58.484 57.895 0.00 0.00 0.00 2.10
2434 5840 3.002144 GCGAGAAGAAAGCAATGGAGATC 59.998 47.826 0.00 0.00 0.00 2.75
2471 5877 4.902308 TGGCGACAACTATCGTGG 57.098 55.556 0.00 0.00 44.13 4.94
2499 5905 2.582272 CCAGCAAGGGCATAAGCAA 58.418 52.632 0.00 0.00 44.61 3.91
2552 5958 3.246112 ACCCTGGCTACAACCGCA 61.246 61.111 0.00 0.00 0.00 5.69
2639 6045 0.757935 CGTTATCCTCCTCCCCGGAA 60.758 60.000 0.73 0.00 42.53 4.30
2640 6046 1.152610 CGTTATCCTCCTCCCCGGA 60.153 63.158 0.73 0.00 40.30 5.14
2728 6134 2.052782 AATAAATCACAGTCCCCCGC 57.947 50.000 0.00 0.00 0.00 6.13
2732 6138 5.643379 TGCAAGAAATAAATCACAGTCCC 57.357 39.130 0.00 0.00 0.00 4.46
2781 6188 3.057019 GCAACGTCACTGATGTTACAGA 58.943 45.455 14.94 0.00 39.41 3.41
2797 6204 6.248210 GTGTTTTGGAAGAAAATTTTGCAACG 59.752 34.615 8.47 0.00 35.93 4.10
2838 6250 3.737559 TGTATCCCATCAGGCTGTTTT 57.262 42.857 15.27 0.00 34.51 2.43
2839 6251 3.959495 ATGTATCCCATCAGGCTGTTT 57.041 42.857 15.27 0.24 34.51 2.83
2848 6260 1.620819 ACTCAGCCGATGTATCCCATC 59.379 52.381 0.00 0.00 45.50 3.51
2849 6261 1.722034 ACTCAGCCGATGTATCCCAT 58.278 50.000 0.00 0.00 36.13 4.00
2850 6262 2.375014 TACTCAGCCGATGTATCCCA 57.625 50.000 0.00 0.00 0.00 4.37
2851 6263 2.159366 CGATACTCAGCCGATGTATCCC 60.159 54.545 11.02 0.00 39.29 3.85
2852 6264 2.488545 ACGATACTCAGCCGATGTATCC 59.511 50.000 11.02 0.59 39.29 2.59
2853 6265 3.437395 AGACGATACTCAGCCGATGTATC 59.563 47.826 0.00 0.00 39.17 2.24
2854 6266 3.189495 CAGACGATACTCAGCCGATGTAT 59.811 47.826 0.00 0.00 0.00 2.29
2855 6267 2.548480 CAGACGATACTCAGCCGATGTA 59.452 50.000 0.00 0.00 0.00 2.29
2856 6268 1.335182 CAGACGATACTCAGCCGATGT 59.665 52.381 0.00 0.00 0.00 3.06
2857 6269 1.604278 TCAGACGATACTCAGCCGATG 59.396 52.381 0.00 0.00 0.00 3.84
2858 6270 1.876799 CTCAGACGATACTCAGCCGAT 59.123 52.381 0.00 0.00 0.00 4.18
2859 6271 1.134491 TCTCAGACGATACTCAGCCGA 60.134 52.381 0.00 0.00 0.00 5.54
2860 6272 1.262950 CTCTCAGACGATACTCAGCCG 59.737 57.143 0.00 0.00 0.00 5.52
2861 6273 1.606668 CCTCTCAGACGATACTCAGCC 59.393 57.143 0.00 0.00 0.00 4.85
2862 6274 1.001815 GCCTCTCAGACGATACTCAGC 60.002 57.143 0.00 0.00 0.00 4.26
2863 6275 1.262950 CGCCTCTCAGACGATACTCAG 59.737 57.143 0.00 0.00 0.00 3.35
2864 6276 1.300481 CGCCTCTCAGACGATACTCA 58.700 55.000 0.00 0.00 0.00 3.41
2865 6277 0.589223 CCGCCTCTCAGACGATACTC 59.411 60.000 0.00 0.00 0.00 2.59
2866 6278 1.448922 GCCGCCTCTCAGACGATACT 61.449 60.000 0.00 0.00 0.00 2.12
2867 6279 1.008309 GCCGCCTCTCAGACGATAC 60.008 63.158 0.00 0.00 0.00 2.24
2868 6280 2.194212 GGCCGCCTCTCAGACGATA 61.194 63.158 0.71 0.00 0.00 2.92
2869 6281 3.532155 GGCCGCCTCTCAGACGAT 61.532 66.667 0.71 0.00 0.00 3.73
2871 6283 4.504916 CTGGCCGCCTCTCAGACG 62.505 72.222 11.61 0.00 0.00 4.18
2872 6284 4.154347 CCTGGCCGCCTCTCAGAC 62.154 72.222 11.61 0.00 0.00 3.51
2877 6289 4.465446 TAGAGCCTGGCCGCCTCT 62.465 66.667 16.57 19.48 0.00 3.69
2878 6290 3.922640 CTAGAGCCTGGCCGCCTC 61.923 72.222 16.57 6.28 0.00 4.70
2879 6291 4.787280 ACTAGAGCCTGGCCGCCT 62.787 66.667 16.57 12.67 0.00 5.52
2880 6292 3.330992 AAACTAGAGCCTGGCCGCC 62.331 63.158 16.57 1.04 0.00 6.13
2881 6293 1.815840 GAAACTAGAGCCTGGCCGC 60.816 63.158 16.57 8.14 0.00 6.53
2882 6294 0.179097 GAGAAACTAGAGCCTGGCCG 60.179 60.000 16.57 4.17 0.00 6.13
2883 6295 0.179234 GGAGAAACTAGAGCCTGGCC 59.821 60.000 16.57 7.08 0.00 5.36
2884 6296 0.179234 GGGAGAAACTAGAGCCTGGC 59.821 60.000 11.65 11.65 0.00 4.85
2885 6297 0.833949 GGGGAGAAACTAGAGCCTGG 59.166 60.000 0.00 0.00 0.00 4.45
2886 6298 0.833949 GGGGGAGAAACTAGAGCCTG 59.166 60.000 0.00 0.00 0.00 4.85
2887 6299 0.719623 AGGGGGAGAAACTAGAGCCT 59.280 55.000 0.00 0.00 0.00 4.58
2888 6300 1.124780 GAGGGGGAGAAACTAGAGCC 58.875 60.000 0.00 0.00 0.00 4.70
2889 6301 1.124780 GGAGGGGGAGAAACTAGAGC 58.875 60.000 0.00 0.00 0.00 4.09
2890 6302 2.673258 GAGGAGGGGGAGAAACTAGAG 58.327 57.143 0.00 0.00 0.00 2.43
2891 6303 1.291335 GGAGGAGGGGGAGAAACTAGA 59.709 57.143 0.00 0.00 0.00 2.43
2892 6304 1.693083 GGGAGGAGGGGGAGAAACTAG 60.693 61.905 0.00 0.00 0.00 2.57
2893 6305 0.342313 GGGAGGAGGGGGAGAAACTA 59.658 60.000 0.00 0.00 0.00 2.24
2894 6306 1.083141 GGGAGGAGGGGGAGAAACT 59.917 63.158 0.00 0.00 0.00 2.66
2895 6307 1.229853 TGGGAGGAGGGGGAGAAAC 60.230 63.158 0.00 0.00 0.00 2.78
2896 6308 1.229853 GTGGGAGGAGGGGGAGAAA 60.230 63.158 0.00 0.00 0.00 2.52
2897 6309 2.454941 GTGGGAGGAGGGGGAGAA 59.545 66.667 0.00 0.00 0.00 2.87
2898 6310 4.075793 CGTGGGAGGAGGGGGAGA 62.076 72.222 0.00 0.00 0.00 3.71
2899 6311 4.075793 TCGTGGGAGGAGGGGGAG 62.076 72.222 0.00 0.00 0.00 4.30
2900 6312 4.393778 GTCGTGGGAGGAGGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
2904 6316 3.827898 GAGCGTCGTGGGAGGAGG 61.828 72.222 0.00 0.00 0.00 4.30
2905 6317 3.827898 GGAGCGTCGTGGGAGGAG 61.828 72.222 0.00 0.00 0.00 3.69
2930 6342 0.313357 GCTAGGTTATCGTCCCGGAC 59.687 60.000 0.73 7.59 0.00 4.79
2931 6343 2.724520 GCTAGGTTATCGTCCCGGA 58.275 57.895 0.73 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.