Multiple sequence alignment - TraesCS4D01G357500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G357500 chr4D 100.000 2450 0 0 1 2450 505699443 505701892 0.000000e+00 4525.0
1 TraesCS4D01G357500 chr4D 82.222 450 43 16 2013 2450 505817174 505817598 1.080000e-93 353.0
2 TraesCS4D01G357500 chr4D 91.870 246 19 1 2150 2395 505833323 505833567 2.330000e-90 342.0
3 TraesCS4D01G357500 chr5A 89.856 1390 76 26 1 1361 701998002 701999355 0.000000e+00 1725.0
4 TraesCS4D01G357500 chr5A 87.771 646 31 18 1838 2450 702022583 702023213 0.000000e+00 712.0
5 TraesCS4D01G357500 chr4B 84.952 1256 86 35 1 1205 661691636 661690433 0.000000e+00 1177.0
6 TraesCS4D01G357500 chr4B 89.155 627 37 12 760 1367 661231890 661231276 0.000000e+00 752.0
7 TraesCS4D01G357500 chr4B 84.564 745 51 25 1760 2450 661245084 661245818 0.000000e+00 680.0
8 TraesCS4D01G357500 chr4B 84.638 690 53 21 1805 2450 661560791 661560111 2.660000e-179 638.0
9 TraesCS4D01G357500 chr4B 87.914 513 30 9 1 502 661234900 661234409 2.110000e-160 575.0
10 TraesCS4D01G357500 chr4B 87.990 408 40 6 96 499 661618491 661618089 7.930000e-130 473.0
11 TraesCS4D01G357500 chr3B 95.238 42 0 2 1537 1578 368734652 368734691 5.650000e-07 65.8
12 TraesCS4D01G357500 chr6B 88.462 52 6 0 1416 1467 694520474 694520525 2.030000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G357500 chr4D 505699443 505701892 2449 False 4525.0 4525 100.0000 1 2450 1 chr4D.!!$F1 2449
1 TraesCS4D01G357500 chr5A 701998002 701999355 1353 False 1725.0 1725 89.8560 1 1361 1 chr5A.!!$F1 1360
2 TraesCS4D01G357500 chr5A 702022583 702023213 630 False 712.0 712 87.7710 1838 2450 1 chr5A.!!$F2 612
3 TraesCS4D01G357500 chr4B 661690433 661691636 1203 True 1177.0 1177 84.9520 1 1205 1 chr4B.!!$R3 1204
4 TraesCS4D01G357500 chr4B 661245084 661245818 734 False 680.0 680 84.5640 1760 2450 1 chr4B.!!$F1 690
5 TraesCS4D01G357500 chr4B 661231276 661234900 3624 True 663.5 752 88.5345 1 1367 2 chr4B.!!$R4 1366
6 TraesCS4D01G357500 chr4B 661560111 661560791 680 True 638.0 638 84.6380 1805 2450 1 chr4B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 164 1.002544 GCAAGTAGCTGAAGGGTCTGT 59.997 52.381 0.00 0.00 41.15 3.41 F
851 3148 1.048160 TGCAGTCCCGGAGATGCATA 61.048 55.000 19.06 2.75 43.34 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1144 3460 0.027194 TCATCGGATTCGTCGTCGTC 59.973 55.0 1.33 0.0 38.33 4.20 R
2259 4636 0.105401 TGTGTAGGAGGTGGTGGTCA 60.105 55.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 65 5.491070 TCTGGTTCCAACTCTGAACATATG 58.509 41.667 0.00 0.00 43.05 1.78
147 162 1.352083 TGCAAGTAGCTGAAGGGTCT 58.648 50.000 0.00 0.00 45.94 3.85
149 164 1.002544 GCAAGTAGCTGAAGGGTCTGT 59.997 52.381 0.00 0.00 41.15 3.41
200 219 1.774254 AGGGATGGCAATCGGTAATCA 59.226 47.619 0.00 0.00 33.18 2.57
201 220 2.376518 AGGGATGGCAATCGGTAATCAT 59.623 45.455 0.00 0.00 33.18 2.45
245 264 5.373222 TGGCTACGGCATGACTAAATATTT 58.627 37.500 5.89 5.89 40.87 1.40
289 320 4.378253 GCTTCTGTTGCTGATTCTCTGTTC 60.378 45.833 0.00 0.00 0.00 3.18
291 322 2.746362 CTGTTGCTGATTCTCTGTTCCC 59.254 50.000 0.00 0.00 0.00 3.97
302 333 7.123383 TGATTCTCTGTTCCCACTATGTACTA 58.877 38.462 0.00 0.00 0.00 1.82
305 336 5.833667 TCTCTGTTCCCACTATGTACTATGG 59.166 44.000 0.00 0.00 0.00 2.74
306 337 5.525484 TCTGTTCCCACTATGTACTATGGT 58.475 41.667 0.00 0.00 0.00 3.55
400 434 8.253797 CGATTCTATCTTTCGTCGAAAACTTAG 58.746 37.037 20.11 18.29 30.84 2.18
403 437 9.467258 TTCTATCTTTCGTCGAAAACTTAGAAA 57.533 29.630 25.51 17.16 31.42 2.52
471 505 3.660865 TCGGCTTTTAAGAACCTCACTC 58.339 45.455 0.00 0.00 0.00 3.51
549 586 1.879380 GTAGAACTGTGCCATGCAACA 59.121 47.619 0.00 0.00 41.47 3.33
598 766 8.762645 TGTATGTGAAAATTCAGTAGGAGATCT 58.237 33.333 0.00 0.00 37.98 2.75
632 879 2.368655 TCGTAACGAGGTTTTAGGCC 57.631 50.000 0.00 0.00 0.00 5.19
645 892 8.095169 CGAGGTTTTAGGCCTATGTAGAAATAT 58.905 37.037 14.74 3.71 36.29 1.28
646 893 9.220767 GAGGTTTTAGGCCTATGTAGAAATATG 57.779 37.037 14.74 0.00 36.29 1.78
649 896 9.000486 GTTTTAGGCCTATGTAGAAATATGTCC 58.000 37.037 14.74 0.00 0.00 4.02
650 897 7.865530 TTAGGCCTATGTAGAAATATGTCCA 57.134 36.000 14.74 0.00 0.00 4.02
847 3144 2.202987 GCTGCAGTCCCGGAGATG 60.203 66.667 16.64 0.00 0.00 2.90
851 3148 1.048160 TGCAGTCCCGGAGATGCATA 61.048 55.000 19.06 2.75 43.34 3.14
922 3219 1.268625 TCACTCGCGTGAAGCTTCTTA 59.731 47.619 26.09 5.15 46.61 2.10
1134 3450 2.722071 GAGAGCTCCGATTACAACTCG 58.278 52.381 10.93 0.00 35.92 4.18
1143 3459 2.767678 CGATTACAACTCGTACGACGAC 59.232 50.000 15.28 0.00 46.73 4.34
1144 3460 2.211449 TTACAACTCGTACGACGACG 57.789 50.000 15.28 7.31 46.73 5.12
1145 3461 1.414378 TACAACTCGTACGACGACGA 58.586 50.000 15.28 17.26 46.73 4.20
1193 3512 2.941064 CGTACTACGAAGACCATGAGGA 59.059 50.000 2.17 0.00 46.05 3.71
1194 3513 3.564644 CGTACTACGAAGACCATGAGGAT 59.435 47.826 2.17 0.00 46.05 3.24
1195 3514 4.554919 CGTACTACGAAGACCATGAGGATG 60.555 50.000 2.17 0.00 46.05 3.51
1196 3515 3.632333 ACTACGAAGACCATGAGGATGA 58.368 45.455 0.00 0.00 38.69 2.92
1197 3516 3.634448 ACTACGAAGACCATGAGGATGAG 59.366 47.826 0.00 0.00 38.69 2.90
1218 3537 2.329399 GGAGGAGGAGGAGGAGGGT 61.329 68.421 0.00 0.00 0.00 4.34
1376 3698 4.790962 CGGCCACCTGCTGCATCT 62.791 66.667 1.31 0.00 40.07 2.90
1377 3699 2.362120 GGCCACCTGCTGCATCTT 60.362 61.111 1.31 0.00 40.92 2.40
1378 3700 2.707849 GGCCACCTGCTGCATCTTG 61.708 63.158 1.31 0.36 40.92 3.02
1379 3701 1.975407 GCCACCTGCTGCATCTTGT 60.975 57.895 1.31 0.00 36.87 3.16
1380 3702 1.530013 GCCACCTGCTGCATCTTGTT 61.530 55.000 1.31 0.00 36.87 2.83
1381 3703 0.963962 CCACCTGCTGCATCTTGTTT 59.036 50.000 1.31 0.00 0.00 2.83
1382 3704 2.161855 CCACCTGCTGCATCTTGTTTA 58.838 47.619 1.31 0.00 0.00 2.01
1383 3705 2.095059 CCACCTGCTGCATCTTGTTTAC 60.095 50.000 1.31 0.00 0.00 2.01
1384 3706 2.816087 CACCTGCTGCATCTTGTTTACT 59.184 45.455 1.31 0.00 0.00 2.24
1385 3707 4.002982 CACCTGCTGCATCTTGTTTACTA 58.997 43.478 1.31 0.00 0.00 1.82
1386 3708 4.003648 ACCTGCTGCATCTTGTTTACTAC 58.996 43.478 1.31 0.00 0.00 2.73
1387 3709 3.375299 CCTGCTGCATCTTGTTTACTACC 59.625 47.826 1.31 0.00 0.00 3.18
1388 3710 4.002982 CTGCTGCATCTTGTTTACTACCA 58.997 43.478 1.31 0.00 0.00 3.25
1389 3711 4.588899 TGCTGCATCTTGTTTACTACCAT 58.411 39.130 0.00 0.00 0.00 3.55
1390 3712 4.395854 TGCTGCATCTTGTTTACTACCATG 59.604 41.667 0.00 0.00 0.00 3.66
1391 3713 4.201950 GCTGCATCTTGTTTACTACCATGG 60.202 45.833 11.19 11.19 0.00 3.66
1392 3714 4.269183 TGCATCTTGTTTACTACCATGGG 58.731 43.478 18.09 0.85 0.00 4.00
1393 3715 4.018870 TGCATCTTGTTTACTACCATGGGA 60.019 41.667 18.09 6.59 0.00 4.37
1394 3716 4.335594 GCATCTTGTTTACTACCATGGGAC 59.664 45.833 18.09 5.31 0.00 4.46
1395 3717 5.745227 CATCTTGTTTACTACCATGGGACT 58.255 41.667 18.09 0.00 0.00 3.85
1396 3718 5.836024 TCTTGTTTACTACCATGGGACTT 57.164 39.130 18.09 0.00 0.00 3.01
1397 3719 6.195600 TCTTGTTTACTACCATGGGACTTT 57.804 37.500 18.09 0.00 0.00 2.66
1398 3720 6.235664 TCTTGTTTACTACCATGGGACTTTC 58.764 40.000 18.09 1.54 0.00 2.62
1399 3721 5.570205 TGTTTACTACCATGGGACTTTCA 57.430 39.130 18.09 4.25 0.00 2.69
1400 3722 6.134535 TGTTTACTACCATGGGACTTTCAT 57.865 37.500 18.09 0.00 0.00 2.57
1401 3723 6.548321 TGTTTACTACCATGGGACTTTCATT 58.452 36.000 18.09 0.00 0.00 2.57
1402 3724 7.007723 TGTTTACTACCATGGGACTTTCATTT 58.992 34.615 18.09 0.00 0.00 2.32
1403 3725 8.164733 TGTTTACTACCATGGGACTTTCATTTA 58.835 33.333 18.09 0.00 0.00 1.40
1404 3726 9.185680 GTTTACTACCATGGGACTTTCATTTAT 57.814 33.333 18.09 0.00 0.00 1.40
1405 3727 8.746052 TTACTACCATGGGACTTTCATTTATG 57.254 34.615 18.09 0.00 0.00 1.90
1406 3728 6.731467 ACTACCATGGGACTTTCATTTATGT 58.269 36.000 18.09 0.00 0.00 2.29
1407 3729 7.182060 ACTACCATGGGACTTTCATTTATGTT 58.818 34.615 18.09 0.00 0.00 2.71
1408 3730 6.284891 ACCATGGGACTTTCATTTATGTTG 57.715 37.500 18.09 0.00 0.00 3.33
1409 3731 5.779771 ACCATGGGACTTTCATTTATGTTGT 59.220 36.000 18.09 0.00 0.00 3.32
1410 3732 6.071391 ACCATGGGACTTTCATTTATGTTGTC 60.071 38.462 18.09 0.00 0.00 3.18
1411 3733 6.153340 CCATGGGACTTTCATTTATGTTGTCT 59.847 38.462 2.85 0.00 0.00 3.41
1412 3734 6.817765 TGGGACTTTCATTTATGTTGTCTC 57.182 37.500 0.00 0.00 0.00 3.36
1413 3735 5.710099 TGGGACTTTCATTTATGTTGTCTCC 59.290 40.000 0.00 0.00 0.00 3.71
1414 3736 5.163754 GGGACTTTCATTTATGTTGTCTCCG 60.164 44.000 0.00 0.00 0.00 4.63
1415 3737 5.296813 ACTTTCATTTATGTTGTCTCCGC 57.703 39.130 0.00 0.00 0.00 5.54
1416 3738 4.156008 ACTTTCATTTATGTTGTCTCCGCC 59.844 41.667 0.00 0.00 0.00 6.13
1417 3739 3.342377 TCATTTATGTTGTCTCCGCCA 57.658 42.857 0.00 0.00 0.00 5.69
1418 3740 3.680490 TCATTTATGTTGTCTCCGCCAA 58.320 40.909 0.00 0.00 0.00 4.52
1419 3741 3.689161 TCATTTATGTTGTCTCCGCCAAG 59.311 43.478 0.00 0.00 0.00 3.61
1420 3742 2.107950 TTATGTTGTCTCCGCCAAGG 57.892 50.000 0.00 0.00 42.97 3.61
1421 3743 0.981183 TATGTTGTCTCCGCCAAGGT 59.019 50.000 0.00 0.00 41.99 3.50
1422 3744 0.110486 ATGTTGTCTCCGCCAAGGTT 59.890 50.000 0.00 0.00 41.99 3.50
1423 3745 0.106918 TGTTGTCTCCGCCAAGGTTT 60.107 50.000 0.00 0.00 41.99 3.27
1424 3746 1.029681 GTTGTCTCCGCCAAGGTTTT 58.970 50.000 0.00 0.00 41.99 2.43
1425 3747 1.001706 GTTGTCTCCGCCAAGGTTTTC 60.002 52.381 0.00 0.00 41.99 2.29
1426 3748 0.882927 TGTCTCCGCCAAGGTTTTCG 60.883 55.000 0.00 0.00 41.99 3.46
1427 3749 0.601841 GTCTCCGCCAAGGTTTTCGA 60.602 55.000 0.00 0.00 41.99 3.71
1428 3750 0.320421 TCTCCGCCAAGGTTTTCGAG 60.320 55.000 0.00 0.00 41.99 4.04
1429 3751 0.602905 CTCCGCCAAGGTTTTCGAGT 60.603 55.000 0.00 0.00 41.99 4.18
1430 3752 0.601841 TCCGCCAAGGTTTTCGAGTC 60.602 55.000 0.00 0.00 41.99 3.36
1431 3753 0.882927 CCGCCAAGGTTTTCGAGTCA 60.883 55.000 0.00 0.00 34.51 3.41
1432 3754 0.941542 CGCCAAGGTTTTCGAGTCAA 59.058 50.000 0.00 0.00 0.00 3.18
1433 3755 1.333791 CGCCAAGGTTTTCGAGTCAAC 60.334 52.381 0.00 0.00 0.00 3.18
1434 3756 1.333791 GCCAAGGTTTTCGAGTCAACG 60.334 52.381 0.00 0.00 0.00 4.10
1435 3757 2.206750 CCAAGGTTTTCGAGTCAACGA 58.793 47.619 0.00 0.00 40.55 3.85
1436 3758 2.221055 CCAAGGTTTTCGAGTCAACGAG 59.779 50.000 0.00 0.00 43.04 4.18
1437 3759 2.864343 CAAGGTTTTCGAGTCAACGAGT 59.136 45.455 0.00 0.00 43.04 4.18
1438 3760 2.740452 AGGTTTTCGAGTCAACGAGTC 58.260 47.619 0.00 0.00 43.04 3.36
1439 3761 2.100252 AGGTTTTCGAGTCAACGAGTCA 59.900 45.455 0.00 0.00 43.04 3.41
1440 3762 3.057734 GGTTTTCGAGTCAACGAGTCAT 58.942 45.455 0.00 0.00 43.04 3.06
1441 3763 3.493503 GGTTTTCGAGTCAACGAGTCATT 59.506 43.478 0.00 0.00 43.04 2.57
1442 3764 4.376109 GGTTTTCGAGTCAACGAGTCATTC 60.376 45.833 0.00 0.00 43.04 2.67
1443 3765 3.917329 TTCGAGTCAACGAGTCATTCT 57.083 42.857 0.00 0.00 43.04 2.40
1444 3766 3.203161 TCGAGTCAACGAGTCATTCTG 57.797 47.619 0.00 0.00 37.37 3.02
1445 3767 2.095212 TCGAGTCAACGAGTCATTCTGG 60.095 50.000 0.00 0.00 37.37 3.86
1446 3768 2.611518 GAGTCAACGAGTCATTCTGGG 58.388 52.381 0.00 0.00 32.72 4.45
1447 3769 1.971357 AGTCAACGAGTCATTCTGGGT 59.029 47.619 0.00 0.00 0.00 4.51
1448 3770 3.162666 AGTCAACGAGTCATTCTGGGTA 58.837 45.455 0.00 0.00 0.00 3.69
1449 3771 3.193691 AGTCAACGAGTCATTCTGGGTAG 59.806 47.826 0.00 0.00 0.00 3.18
1450 3772 2.094182 TCAACGAGTCATTCTGGGTAGC 60.094 50.000 0.00 0.00 0.00 3.58
1451 3773 0.456221 ACGAGTCATTCTGGGTAGCG 59.544 55.000 0.00 0.00 0.00 4.26
1452 3774 0.738975 CGAGTCATTCTGGGTAGCGA 59.261 55.000 0.00 0.00 0.00 4.93
1453 3775 1.534175 CGAGTCATTCTGGGTAGCGAC 60.534 57.143 0.00 0.00 0.00 5.19
1454 3776 1.751924 GAGTCATTCTGGGTAGCGACT 59.248 52.381 0.00 0.00 36.47 4.18
1455 3777 1.751924 AGTCATTCTGGGTAGCGACTC 59.248 52.381 0.00 0.00 0.00 3.36
1456 3778 1.751924 GTCATTCTGGGTAGCGACTCT 59.248 52.381 0.00 0.00 0.00 3.24
1457 3779 2.166664 GTCATTCTGGGTAGCGACTCTT 59.833 50.000 0.00 0.00 0.00 2.85
1458 3780 2.166459 TCATTCTGGGTAGCGACTCTTG 59.834 50.000 0.00 0.00 0.00 3.02
1459 3781 1.919240 TTCTGGGTAGCGACTCTTGA 58.081 50.000 0.00 0.00 0.00 3.02
1460 3782 1.174783 TCTGGGTAGCGACTCTTGAC 58.825 55.000 0.00 0.00 0.00 3.18
1461 3783 0.179161 CTGGGTAGCGACTCTTGACG 60.179 60.000 0.00 0.00 34.73 4.35
1462 3784 0.607217 TGGGTAGCGACTCTTGACGA 60.607 55.000 0.00 0.00 33.54 4.20
1463 3785 0.099082 GGGTAGCGACTCTTGACGAG 59.901 60.000 0.00 0.00 45.56 4.18
1472 3794 2.121116 CTCTTGACGAGTCGTGTTGT 57.879 50.000 25.31 0.00 41.37 3.32
1473 3795 1.781429 CTCTTGACGAGTCGTGTTGTG 59.219 52.381 25.31 9.15 41.37 3.33
1474 3796 0.229753 CTTGACGAGTCGTGTTGTGC 59.770 55.000 25.31 7.93 41.37 4.57
1475 3797 1.149361 TTGACGAGTCGTGTTGTGCC 61.149 55.000 25.31 7.14 41.37 5.01
1476 3798 2.645510 GACGAGTCGTGTTGTGCCG 61.646 63.158 25.31 0.00 41.37 5.69
1477 3799 4.059459 CGAGTCGTGTTGTGCCGC 62.059 66.667 3.82 0.00 0.00 6.53
1478 3800 2.661866 GAGTCGTGTTGTGCCGCT 60.662 61.111 0.00 0.00 0.00 5.52
1479 3801 2.943345 GAGTCGTGTTGTGCCGCTG 61.943 63.158 0.00 0.00 0.00 5.18
1480 3802 4.012895 GTCGTGTTGTGCCGCTGG 62.013 66.667 0.00 0.00 0.00 4.85
1481 3803 4.228567 TCGTGTTGTGCCGCTGGA 62.229 61.111 0.00 0.00 0.00 3.86
1482 3804 4.012895 CGTGTTGTGCCGCTGGAC 62.013 66.667 0.00 0.00 0.00 4.02
1483 3805 2.591715 GTGTTGTGCCGCTGGACT 60.592 61.111 0.92 0.00 0.00 3.85
1484 3806 1.301401 GTGTTGTGCCGCTGGACTA 60.301 57.895 0.92 0.00 0.00 2.59
1485 3807 1.005037 TGTTGTGCCGCTGGACTAG 60.005 57.895 0.92 0.00 0.00 2.57
1486 3808 1.004918 GTTGTGCCGCTGGACTAGT 60.005 57.895 0.00 0.00 0.00 2.57
1487 3809 1.014564 GTTGTGCCGCTGGACTAGTC 61.015 60.000 14.87 14.87 0.00 2.59
1488 3810 2.202623 GTGCCGCTGGACTAGTCG 60.203 66.667 16.56 5.78 0.00 4.18
1489 3811 2.360726 TGCCGCTGGACTAGTCGA 60.361 61.111 16.56 12.04 0.00 4.20
1490 3812 2.407428 TGCCGCTGGACTAGTCGAG 61.407 63.158 25.75 25.75 38.29 4.04
1491 3813 3.111939 CCGCTGGACTAGTCGAGG 58.888 66.667 29.23 20.64 36.18 4.63
1492 3814 1.749638 CCGCTGGACTAGTCGAGGT 60.750 63.158 29.23 0.00 36.18 3.85
1493 3815 1.429825 CGCTGGACTAGTCGAGGTG 59.570 63.158 29.23 17.97 36.18 4.00
1494 3816 1.306642 CGCTGGACTAGTCGAGGTGT 61.307 60.000 29.23 0.00 36.18 4.16
1495 3817 0.889306 GCTGGACTAGTCGAGGTGTT 59.111 55.000 29.23 0.00 36.18 3.32
1496 3818 1.272769 GCTGGACTAGTCGAGGTGTTT 59.727 52.381 29.23 0.00 36.18 2.83
1497 3819 2.927014 GCTGGACTAGTCGAGGTGTTTG 60.927 54.545 29.23 9.66 36.18 2.93
1498 3820 2.557056 CTGGACTAGTCGAGGTGTTTGA 59.443 50.000 23.24 0.00 32.68 2.69
1499 3821 2.295349 TGGACTAGTCGAGGTGTTTGAC 59.705 50.000 16.56 0.00 40.06 3.18
1500 3822 2.352519 GGACTAGTCGAGGTGTTTGACC 60.353 54.545 16.56 0.00 46.58 4.02
1508 3830 2.399856 GGTGTTTGACCGACTTGCA 58.600 52.632 0.00 0.00 34.02 4.08
1509 3831 0.307760 GGTGTTTGACCGACTTGCAG 59.692 55.000 0.00 0.00 34.02 4.41
1510 3832 1.014352 GTGTTTGACCGACTTGCAGT 58.986 50.000 0.00 0.00 0.00 4.40
1511 3833 1.400494 GTGTTTGACCGACTTGCAGTT 59.600 47.619 0.00 0.00 0.00 3.16
1512 3834 2.610374 GTGTTTGACCGACTTGCAGTTA 59.390 45.455 0.00 0.00 0.00 2.24
1513 3835 2.610374 TGTTTGACCGACTTGCAGTTAC 59.390 45.455 0.00 0.00 0.00 2.50
1514 3836 1.493772 TTGACCGACTTGCAGTTACG 58.506 50.000 0.00 0.00 0.00 3.18
1515 3837 0.669619 TGACCGACTTGCAGTTACGA 59.330 50.000 0.00 0.00 0.00 3.43
1516 3838 1.058404 GACCGACTTGCAGTTACGAC 58.942 55.000 0.00 0.00 0.00 4.34
1517 3839 0.672342 ACCGACTTGCAGTTACGACT 59.328 50.000 0.00 0.00 36.25 4.18
1518 3840 1.335689 ACCGACTTGCAGTTACGACTC 60.336 52.381 0.00 0.00 32.54 3.36
1519 3841 1.335597 CCGACTTGCAGTTACGACTCA 60.336 52.381 0.00 0.00 32.54 3.41
1520 3842 2.596452 CGACTTGCAGTTACGACTCAT 58.404 47.619 0.00 0.00 32.54 2.90
1521 3843 2.594654 CGACTTGCAGTTACGACTCATC 59.405 50.000 0.00 0.00 32.54 2.92
1531 3853 2.405143 CGACTCATCGGCTAGTGGA 58.595 57.895 0.00 0.00 44.99 4.02
1532 3854 0.029567 CGACTCATCGGCTAGTGGAC 59.970 60.000 0.00 0.00 44.99 4.02
1539 3861 2.184579 GGCTAGTGGACGACAGCC 59.815 66.667 12.65 12.65 39.86 4.85
1540 3862 2.184579 GCTAGTGGACGACAGCCC 59.815 66.667 0.00 0.00 0.00 5.19
1541 3863 2.352032 GCTAGTGGACGACAGCCCT 61.352 63.158 0.00 0.00 0.00 5.19
1542 3864 1.810532 CTAGTGGACGACAGCCCTC 59.189 63.158 0.00 0.00 0.00 4.30
1543 3865 0.965866 CTAGTGGACGACAGCCCTCA 60.966 60.000 0.00 0.00 0.00 3.86
1544 3866 0.324368 TAGTGGACGACAGCCCTCAT 60.324 55.000 0.00 0.00 0.00 2.90
1545 3867 1.448540 GTGGACGACAGCCCTCATG 60.449 63.158 0.00 0.00 0.00 3.07
1546 3868 1.609210 TGGACGACAGCCCTCATGA 60.609 57.895 0.00 0.00 0.00 3.07
1547 3869 1.142748 GGACGACAGCCCTCATGAG 59.857 63.158 16.24 16.24 0.00 2.90
1548 3870 1.608717 GGACGACAGCCCTCATGAGT 61.609 60.000 21.11 2.94 0.00 3.41
1549 3871 0.247736 GACGACAGCCCTCATGAGTT 59.752 55.000 21.11 4.02 0.00 3.01
1550 3872 0.687354 ACGACAGCCCTCATGAGTTT 59.313 50.000 21.11 3.66 0.00 2.66
1551 3873 1.072331 ACGACAGCCCTCATGAGTTTT 59.928 47.619 21.11 3.30 0.00 2.43
1552 3874 2.154462 CGACAGCCCTCATGAGTTTTT 58.846 47.619 21.11 1.60 0.00 1.94
1573 3895 7.408756 TTTTTAGCCATGCTATCAATCACTT 57.591 32.000 0.00 0.00 41.01 3.16
1574 3896 6.624352 TTTAGCCATGCTATCAATCACTTC 57.376 37.500 0.00 0.00 41.01 3.01
1575 3897 3.136763 AGCCATGCTATCAATCACTTCG 58.863 45.455 0.00 0.00 36.99 3.79
1576 3898 2.225019 GCCATGCTATCAATCACTTCGG 59.775 50.000 0.00 0.00 0.00 4.30
1577 3899 3.470709 CCATGCTATCAATCACTTCGGT 58.529 45.455 0.00 0.00 0.00 4.69
1578 3900 3.249320 CCATGCTATCAATCACTTCGGTG 59.751 47.826 0.00 0.00 46.54 4.94
1579 3901 2.279741 TGCTATCAATCACTTCGGTGC 58.720 47.619 0.00 0.00 44.94 5.01
1580 3902 1.599542 GCTATCAATCACTTCGGTGCC 59.400 52.381 0.00 0.00 44.94 5.01
1581 3903 2.213499 CTATCAATCACTTCGGTGCCC 58.787 52.381 0.00 0.00 44.94 5.36
1582 3904 0.394352 ATCAATCACTTCGGTGCCCC 60.394 55.000 0.00 0.00 44.94 5.80
1583 3905 1.303236 CAATCACTTCGGTGCCCCA 60.303 57.895 0.00 0.00 44.94 4.96
1584 3906 0.893270 CAATCACTTCGGTGCCCCAA 60.893 55.000 0.00 0.00 44.94 4.12
1585 3907 0.893727 AATCACTTCGGTGCCCCAAC 60.894 55.000 0.00 0.00 44.94 3.77
1586 3908 2.764637 ATCACTTCGGTGCCCCAACC 62.765 60.000 0.00 0.00 44.94 3.77
1587 3909 4.280019 ACTTCGGTGCCCCAACCC 62.280 66.667 0.00 0.00 36.84 4.11
1588 3910 4.278513 CTTCGGTGCCCCAACCCA 62.279 66.667 0.00 0.00 36.84 4.51
1589 3911 4.589675 TTCGGTGCCCCAACCCAC 62.590 66.667 0.00 0.00 36.84 4.61
1592 3914 4.531426 GGTGCCCCAACCCACACA 62.531 66.667 0.00 0.00 34.69 3.72
1593 3915 3.223589 GTGCCCCAACCCACACAC 61.224 66.667 0.00 0.00 33.23 3.82
1594 3916 3.744155 TGCCCCAACCCACACACA 61.744 61.111 0.00 0.00 0.00 3.72
1595 3917 2.203625 GCCCCAACCCACACACAT 60.204 61.111 0.00 0.00 0.00 3.21
1596 3918 1.075836 GCCCCAACCCACACACATA 59.924 57.895 0.00 0.00 0.00 2.29
1597 3919 0.324275 GCCCCAACCCACACACATAT 60.324 55.000 0.00 0.00 0.00 1.78
1598 3920 1.064314 GCCCCAACCCACACACATATA 60.064 52.381 0.00 0.00 0.00 0.86
1599 3921 2.650322 CCCCAACCCACACACATATAC 58.350 52.381 0.00 0.00 0.00 1.47
1600 3922 2.025793 CCCCAACCCACACACATATACA 60.026 50.000 0.00 0.00 0.00 2.29
1601 3923 3.013921 CCCAACCCACACACATATACAC 58.986 50.000 0.00 0.00 0.00 2.90
1602 3924 3.308117 CCCAACCCACACACATATACACT 60.308 47.826 0.00 0.00 0.00 3.55
1603 3925 3.689161 CCAACCCACACACATATACACTG 59.311 47.826 0.00 0.00 0.00 3.66
1604 3926 2.985896 ACCCACACACATATACACTGC 58.014 47.619 0.00 0.00 0.00 4.40
1605 3927 2.288666 CCCACACACATATACACTGCC 58.711 52.381 0.00 0.00 0.00 4.85
1606 3928 2.355615 CCCACACACATATACACTGCCA 60.356 50.000 0.00 0.00 0.00 4.92
1607 3929 3.342719 CCACACACATATACACTGCCAA 58.657 45.455 0.00 0.00 0.00 4.52
1608 3930 3.755905 CCACACACATATACACTGCCAAA 59.244 43.478 0.00 0.00 0.00 3.28
1609 3931 4.379394 CCACACACATATACACTGCCAAAC 60.379 45.833 0.00 0.00 0.00 2.93
1610 3932 3.756434 ACACACATATACACTGCCAAACC 59.244 43.478 0.00 0.00 0.00 3.27
1611 3933 4.009675 CACACATATACACTGCCAAACCT 58.990 43.478 0.00 0.00 0.00 3.50
1612 3934 4.458989 CACACATATACACTGCCAAACCTT 59.541 41.667 0.00 0.00 0.00 3.50
1613 3935 4.458989 ACACATATACACTGCCAAACCTTG 59.541 41.667 0.00 0.00 0.00 3.61
1614 3936 4.458989 CACATATACACTGCCAAACCTTGT 59.541 41.667 0.00 0.00 0.00 3.16
1615 3937 4.700213 ACATATACACTGCCAAACCTTGTC 59.300 41.667 0.00 0.00 0.00 3.18
1616 3938 2.719531 TACACTGCCAAACCTTGTCA 57.280 45.000 0.00 0.00 0.00 3.58
1617 3939 1.392589 ACACTGCCAAACCTTGTCAG 58.607 50.000 0.00 0.00 0.00 3.51
1618 3940 0.031178 CACTGCCAAACCTTGTCAGC 59.969 55.000 0.00 0.00 0.00 4.26
1619 3941 0.106519 ACTGCCAAACCTTGTCAGCT 60.107 50.000 0.00 0.00 0.00 4.24
1620 3942 1.035139 CTGCCAAACCTTGTCAGCTT 58.965 50.000 0.00 0.00 0.00 3.74
1621 3943 2.229792 CTGCCAAACCTTGTCAGCTTA 58.770 47.619 0.00 0.00 0.00 3.09
1622 3944 2.622942 CTGCCAAACCTTGTCAGCTTAA 59.377 45.455 0.00 0.00 0.00 1.85
1623 3945 2.622942 TGCCAAACCTTGTCAGCTTAAG 59.377 45.455 0.00 0.00 0.00 1.85
1624 3946 2.029918 GCCAAACCTTGTCAGCTTAAGG 60.030 50.000 16.02 16.02 46.99 2.69
1631 3953 5.358298 CCTTGTCAGCTTAAGGTAACAAC 57.642 43.478 17.51 9.62 38.87 3.32
1632 3954 5.063880 CCTTGTCAGCTTAAGGTAACAACT 58.936 41.667 17.51 0.00 38.87 3.16
1633 3955 5.179555 CCTTGTCAGCTTAAGGTAACAACTC 59.820 44.000 17.51 1.13 38.87 3.01
1634 3956 5.546621 TGTCAGCTTAAGGTAACAACTCT 57.453 39.130 8.22 0.00 41.41 3.24
1635 3957 5.297547 TGTCAGCTTAAGGTAACAACTCTG 58.702 41.667 8.22 1.91 41.41 3.35
1636 3958 5.163343 TGTCAGCTTAAGGTAACAACTCTGT 60.163 40.000 8.22 0.00 37.39 3.41
1637 3959 6.041182 TGTCAGCTTAAGGTAACAACTCTGTA 59.959 38.462 8.22 0.00 33.45 2.74
1638 3960 6.586844 GTCAGCTTAAGGTAACAACTCTGTAG 59.413 42.308 6.90 0.00 33.45 2.74
1639 3961 5.869888 CAGCTTAAGGTAACAACTCTGTAGG 59.130 44.000 6.90 0.00 33.45 3.18
1640 3962 4.630505 GCTTAAGGTAACAACTCTGTAGGC 59.369 45.833 4.29 0.00 33.45 3.93
1641 3963 3.314541 AAGGTAACAACTCTGTAGGCG 57.685 47.619 0.00 0.00 33.45 5.52
1642 3964 1.067071 AGGTAACAACTCTGTAGGCGC 60.067 52.381 0.00 0.00 33.45 6.53
1643 3965 1.337447 GGTAACAACTCTGTAGGCGCA 60.337 52.381 10.83 0.00 33.45 6.09
1644 3966 2.618053 GTAACAACTCTGTAGGCGCAT 58.382 47.619 10.83 3.98 33.45 4.73
1645 3967 1.726853 AACAACTCTGTAGGCGCATC 58.273 50.000 10.83 0.00 33.45 3.91
1646 3968 0.898320 ACAACTCTGTAGGCGCATCT 59.102 50.000 10.83 0.00 32.54 2.90
1647 3969 1.284657 CAACTCTGTAGGCGCATCTG 58.715 55.000 10.83 2.99 0.00 2.90
1648 3970 0.176680 AACTCTGTAGGCGCATCTGG 59.823 55.000 10.83 0.00 0.00 3.86
1649 3971 0.972983 ACTCTGTAGGCGCATCTGGT 60.973 55.000 10.83 0.00 0.00 4.00
1650 3972 0.176680 CTCTGTAGGCGCATCTGGTT 59.823 55.000 10.83 0.00 0.00 3.67
1651 3973 0.175760 TCTGTAGGCGCATCTGGTTC 59.824 55.000 10.83 0.00 0.00 3.62
1652 3974 0.176680 CTGTAGGCGCATCTGGTTCT 59.823 55.000 10.83 0.00 0.00 3.01
1653 3975 0.108186 TGTAGGCGCATCTGGTTCTG 60.108 55.000 10.83 0.00 0.00 3.02
1654 3976 0.811616 GTAGGCGCATCTGGTTCTGG 60.812 60.000 10.83 0.00 0.00 3.86
1655 3977 1.264749 TAGGCGCATCTGGTTCTGGT 61.265 55.000 10.83 0.00 0.00 4.00
1656 3978 2.401766 GGCGCATCTGGTTCTGGTG 61.402 63.158 10.83 0.00 0.00 4.17
1657 3979 1.672356 GCGCATCTGGTTCTGGTGT 60.672 57.895 0.30 0.00 0.00 4.16
1658 3980 1.639298 GCGCATCTGGTTCTGGTGTC 61.639 60.000 0.30 0.00 0.00 3.67
1659 3981 1.354337 CGCATCTGGTTCTGGTGTCG 61.354 60.000 0.00 0.00 0.00 4.35
1660 3982 0.320771 GCATCTGGTTCTGGTGTCGT 60.321 55.000 0.00 0.00 0.00 4.34
1661 3983 1.878102 GCATCTGGTTCTGGTGTCGTT 60.878 52.381 0.00 0.00 0.00 3.85
1662 3984 2.069273 CATCTGGTTCTGGTGTCGTTC 58.931 52.381 0.00 0.00 0.00 3.95
1663 3985 1.410004 TCTGGTTCTGGTGTCGTTCT 58.590 50.000 0.00 0.00 0.00 3.01
1664 3986 1.068588 TCTGGTTCTGGTGTCGTTCTG 59.931 52.381 0.00 0.00 0.00 3.02
1665 3987 1.068588 CTGGTTCTGGTGTCGTTCTGA 59.931 52.381 0.00 0.00 0.00 3.27
1666 3988 1.691976 TGGTTCTGGTGTCGTTCTGAT 59.308 47.619 0.00 0.00 0.00 2.90
1667 3989 2.288825 TGGTTCTGGTGTCGTTCTGATC 60.289 50.000 0.00 0.00 0.00 2.92
1668 3990 1.986378 GTTCTGGTGTCGTTCTGATCG 59.014 52.381 1.81 1.81 0.00 3.69
1669 3991 1.244816 TCTGGTGTCGTTCTGATCGT 58.755 50.000 7.88 0.00 0.00 3.73
1670 3992 2.429478 TCTGGTGTCGTTCTGATCGTA 58.571 47.619 7.88 0.00 0.00 3.43
1671 3993 2.418976 TCTGGTGTCGTTCTGATCGTAG 59.581 50.000 7.88 2.06 0.00 3.51
1672 3994 1.471287 TGGTGTCGTTCTGATCGTAGG 59.529 52.381 7.88 0.00 0.00 3.18
1673 3995 1.202268 GGTGTCGTTCTGATCGTAGGG 60.202 57.143 7.88 0.00 0.00 3.53
1674 3996 0.454600 TGTCGTTCTGATCGTAGGGC 59.545 55.000 7.88 0.00 0.00 5.19
1675 3997 0.454600 GTCGTTCTGATCGTAGGGCA 59.545 55.000 7.88 0.00 0.00 5.36
1676 3998 0.454600 TCGTTCTGATCGTAGGGCAC 59.545 55.000 7.88 0.00 0.00 5.01
1677 3999 0.456221 CGTTCTGATCGTAGGGCACT 59.544 55.000 0.00 0.00 0.00 4.40
1678 4000 1.799181 CGTTCTGATCGTAGGGCACTG 60.799 57.143 0.00 0.00 0.00 3.66
1679 4001 0.175760 TTCTGATCGTAGGGCACTGC 59.824 55.000 0.00 0.00 0.00 4.40
1680 4002 0.684479 TCTGATCGTAGGGCACTGCT 60.684 55.000 0.00 0.00 0.00 4.24
1681 4003 0.529337 CTGATCGTAGGGCACTGCTG 60.529 60.000 0.00 0.00 0.00 4.41
1682 4004 0.970427 TGATCGTAGGGCACTGCTGA 60.970 55.000 0.00 0.00 0.00 4.26
1683 4005 0.175760 GATCGTAGGGCACTGCTGAA 59.824 55.000 0.00 0.00 0.00 3.02
1684 4006 0.108138 ATCGTAGGGCACTGCTGAAC 60.108 55.000 0.00 0.00 0.00 3.18
1685 4007 1.185618 TCGTAGGGCACTGCTGAACT 61.186 55.000 0.00 0.00 0.00 3.01
1686 4008 0.737715 CGTAGGGCACTGCTGAACTC 60.738 60.000 0.00 0.00 0.00 3.01
1687 4009 0.391793 GTAGGGCACTGCTGAACTCC 60.392 60.000 0.00 0.00 0.00 3.85
1688 4010 0.835971 TAGGGCACTGCTGAACTCCA 60.836 55.000 0.00 0.00 0.00 3.86
1689 4011 1.673665 GGGCACTGCTGAACTCCAG 60.674 63.158 0.00 0.00 45.67 3.86
1690 4012 1.673665 GGCACTGCTGAACTCCAGG 60.674 63.158 0.00 0.00 43.13 4.45
1691 4013 1.673665 GCACTGCTGAACTCCAGGG 60.674 63.158 0.00 0.00 43.13 4.45
1692 4014 1.002868 CACTGCTGAACTCCAGGGG 60.003 63.158 0.00 0.00 43.13 4.79
1693 4015 1.462238 ACTGCTGAACTCCAGGGGT 60.462 57.895 0.00 0.00 43.13 4.95
1694 4016 1.002868 CTGCTGAACTCCAGGGGTG 60.003 63.158 0.00 0.00 43.13 4.61
1695 4017 1.770110 TGCTGAACTCCAGGGGTGT 60.770 57.895 0.00 0.00 43.13 4.16
1696 4018 1.352622 TGCTGAACTCCAGGGGTGTT 61.353 55.000 0.00 2.62 43.13 3.32
1697 4019 0.690762 GCTGAACTCCAGGGGTGTTA 59.309 55.000 0.00 0.00 43.13 2.41
1698 4020 1.610886 GCTGAACTCCAGGGGTGTTAC 60.611 57.143 0.00 0.00 43.13 2.50
1699 4021 1.697432 CTGAACTCCAGGGGTGTTACA 59.303 52.381 0.00 0.00 39.15 2.41
1700 4022 2.305927 CTGAACTCCAGGGGTGTTACAT 59.694 50.000 0.00 0.00 39.15 2.29
1701 4023 3.517901 CTGAACTCCAGGGGTGTTACATA 59.482 47.826 0.00 0.00 39.15 2.29
1702 4024 4.108570 TGAACTCCAGGGGTGTTACATAT 58.891 43.478 0.00 0.00 39.15 1.78
1703 4025 4.538490 TGAACTCCAGGGGTGTTACATATT 59.462 41.667 0.00 0.00 39.15 1.28
1704 4026 4.503714 ACTCCAGGGGTGTTACATATTG 57.496 45.455 0.00 0.00 0.00 1.90
1705 4027 4.108570 ACTCCAGGGGTGTTACATATTGA 58.891 43.478 0.00 0.00 0.00 2.57
1706 4028 4.538490 ACTCCAGGGGTGTTACATATTGAA 59.462 41.667 0.00 0.00 0.00 2.69
1707 4029 5.014755 ACTCCAGGGGTGTTACATATTGAAA 59.985 40.000 0.00 0.00 0.00 2.69
1708 4030 6.086011 TCCAGGGGTGTTACATATTGAAAT 57.914 37.500 0.00 0.00 0.00 2.17
1709 4031 6.498538 TCCAGGGGTGTTACATATTGAAATT 58.501 36.000 0.00 0.00 0.00 1.82
1710 4032 6.957020 TCCAGGGGTGTTACATATTGAAATTT 59.043 34.615 0.00 0.00 0.00 1.82
1711 4033 7.123547 TCCAGGGGTGTTACATATTGAAATTTC 59.876 37.037 11.41 11.41 0.00 2.17
1712 4034 7.264947 CAGGGGTGTTACATATTGAAATTTCC 58.735 38.462 15.48 0.00 0.00 3.13
1713 4035 6.957020 AGGGGTGTTACATATTGAAATTTCCA 59.043 34.615 15.48 5.01 0.00 3.53
1714 4036 7.623278 AGGGGTGTTACATATTGAAATTTCCAT 59.377 33.333 15.48 12.29 0.00 3.41
1715 4037 7.926018 GGGGTGTTACATATTGAAATTTCCATC 59.074 37.037 15.48 3.31 0.00 3.51
1716 4038 8.474025 GGGTGTTACATATTGAAATTTCCATCA 58.526 33.333 15.48 1.10 0.00 3.07
1717 4039 9.520204 GGTGTTACATATTGAAATTTCCATCAG 57.480 33.333 15.48 8.55 0.00 2.90
1724 4046 9.655769 CATATTGAAATTTCCATCAGAAGTACG 57.344 33.333 15.48 0.00 35.40 3.67
1725 4047 7.921786 ATTGAAATTTCCATCAGAAGTACGA 57.078 32.000 15.48 0.00 35.40 3.43
1726 4048 7.921786 TTGAAATTTCCATCAGAAGTACGAT 57.078 32.000 15.48 0.00 35.40 3.73
1727 4049 7.539712 TGAAATTTCCATCAGAAGTACGATC 57.460 36.000 15.48 0.00 35.40 3.69
1728 4050 7.331026 TGAAATTTCCATCAGAAGTACGATCT 58.669 34.615 15.48 0.00 35.40 2.75
1729 4051 7.824289 TGAAATTTCCATCAGAAGTACGATCTT 59.176 33.333 15.48 0.00 35.40 2.40
1730 4052 8.567285 AAATTTCCATCAGAAGTACGATCTTT 57.433 30.769 1.93 0.00 35.40 2.52
1731 4053 8.567285 AATTTCCATCAGAAGTACGATCTTTT 57.433 30.769 1.93 0.00 35.40 2.27
1732 4054 7.979444 TTTCCATCAGAAGTACGATCTTTTT 57.021 32.000 1.93 0.00 35.40 1.94
1733 4055 9.667107 ATTTCCATCAGAAGTACGATCTTTTTA 57.333 29.630 1.93 0.00 35.40 1.52
1734 4056 8.475331 TTCCATCAGAAGTACGATCTTTTTAC 57.525 34.615 1.93 0.00 0.00 2.01
1735 4057 7.608153 TCCATCAGAAGTACGATCTTTTTACA 58.392 34.615 1.93 0.00 0.00 2.41
1736 4058 8.092068 TCCATCAGAAGTACGATCTTTTTACAA 58.908 33.333 1.93 0.00 0.00 2.41
1737 4059 8.383619 CCATCAGAAGTACGATCTTTTTACAAG 58.616 37.037 1.93 0.00 0.00 3.16
1738 4060 8.926710 CATCAGAAGTACGATCTTTTTACAAGT 58.073 33.333 1.93 0.00 0.00 3.16
1740 4062 9.970395 TCAGAAGTACGATCTTTTTACAAGTAA 57.030 29.630 1.93 0.00 0.00 2.24
1758 4080 7.871853 ACAAGTAATAACTCAACAATGTGTCC 58.128 34.615 0.00 0.00 33.75 4.02
1790 4112 6.732531 AAACCTCGCCTATTTTACAAGTAC 57.267 37.500 0.00 0.00 0.00 2.73
1794 4116 7.732996 ACCTCGCCTATTTTACAAGTACATAT 58.267 34.615 0.00 0.00 0.00 1.78
1795 4117 7.656137 ACCTCGCCTATTTTACAAGTACATATG 59.344 37.037 0.00 0.00 0.00 1.78
1840 4168 3.441222 TCGTCGCCTATTTCACAAGTAGA 59.559 43.478 0.00 0.00 0.00 2.59
1858 4186 4.901849 AGTAGAAATCCTGCATGCCTACTA 59.098 41.667 21.57 11.19 35.12 1.82
1860 4188 3.713764 AGAAATCCTGCATGCCTACTACT 59.286 43.478 16.68 3.95 0.00 2.57
1867 4195 2.959030 TGCATGCCTACTACTAGTCTGG 59.041 50.000 16.68 0.00 0.00 3.86
1933 4261 5.049680 CACAAACCATGCCGTCCTATTATAC 60.050 44.000 0.00 0.00 0.00 1.47
1934 4262 5.163237 ACAAACCATGCCGTCCTATTATACT 60.163 40.000 0.00 0.00 0.00 2.12
1935 4263 6.042322 ACAAACCATGCCGTCCTATTATACTA 59.958 38.462 0.00 0.00 0.00 1.82
1936 4264 6.869206 AACCATGCCGTCCTATTATACTAT 57.131 37.500 0.00 0.00 0.00 2.12
1937 4265 7.966339 AACCATGCCGTCCTATTATACTATA 57.034 36.000 0.00 0.00 0.00 1.31
1938 4266 8.548880 AACCATGCCGTCCTATTATACTATAT 57.451 34.615 0.00 0.00 0.00 0.86
1939 4267 9.650714 AACCATGCCGTCCTATTATACTATATA 57.349 33.333 0.00 0.00 0.00 0.86
1940 4268 9.298250 ACCATGCCGTCCTATTATACTATATAG 57.702 37.037 8.27 8.27 0.00 1.31
1941 4269 8.740906 CCATGCCGTCCTATTATACTATATAGG 58.259 40.741 14.25 0.00 43.11 2.57
1977 4318 9.106070 AGTTTTCTTTTGACGGGTATATACATC 57.894 33.333 14.70 9.10 0.00 3.06
1986 4327 4.093998 ACGGGTATATACATCGCTAGTTCG 59.906 45.833 20.45 9.26 0.00 3.95
1987 4328 4.093998 CGGGTATATACATCGCTAGTTCGT 59.906 45.833 14.70 0.00 0.00 3.85
1998 4347 8.211116 ACATCGCTAGTTCGTATATATAGCTT 57.789 34.615 0.00 0.00 37.34 3.74
2050 4411 5.051641 CGACTCCAGATTGCTAATTAACGAC 60.052 44.000 0.00 0.00 0.00 4.34
2076 4445 3.365291 TTCAGATCGGCCCGGTTCG 62.365 63.158 1.90 3.72 0.00 3.95
2077 4446 4.143333 CAGATCGGCCCGGTTCGT 62.143 66.667 1.90 2.11 0.00 3.85
2175 4552 0.117541 TGTGCCTCCCCTACAACCTA 59.882 55.000 0.00 0.00 0.00 3.08
2278 4655 0.105401 TGACCACCACCTCCTACACA 60.105 55.000 0.00 0.00 0.00 3.72
2327 4710 2.031870 TCAAGGATCGTCATGTCCGAT 58.968 47.619 18.34 18.34 46.91 4.18
2397 4780 1.654954 CCACTGACCCGGAGAGTACG 61.655 65.000 0.73 0.00 0.00 3.67
2398 4781 0.675837 CACTGACCCGGAGAGTACGA 60.676 60.000 0.73 0.00 0.00 3.43
2427 4824 6.582295 GTGATTGATTTGCACTAACAATCGTT 59.418 34.615 18.21 5.09 45.21 3.85
2446 4843 4.957759 GTTGGCCTTGTACAACGATATT 57.042 40.909 3.59 0.00 37.77 1.28
2448 4845 3.275143 TGGCCTTGTACAACGATATTGG 58.725 45.455 3.59 3.81 0.00 3.16
2449 4846 3.055021 TGGCCTTGTACAACGATATTGGA 60.055 43.478 3.59 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.003839 CAGAGGCCCGCTACAAACA 60.004 57.895 0.00 0.00 0.00 2.83
59 65 5.953183 TGATATGTCAATGGTGTTTCTTGC 58.047 37.500 0.00 0.00 0.00 4.01
219 238 2.238942 TAGTCATGCCGTAGCCAATG 57.761 50.000 0.00 0.00 38.69 2.82
245 264 1.915266 CAGAGGTCACCCTGAGGCA 60.915 63.158 6.49 0.00 42.86 4.75
289 320 7.556275 ACAATTTTCACCATAGTACATAGTGGG 59.444 37.037 0.00 0.00 36.05 4.61
302 333 6.996509 AGCAGAACAATACAATTTTCACCAT 58.003 32.000 0.00 0.00 0.00 3.55
305 336 8.025445 AGATGAGCAGAACAATACAATTTTCAC 58.975 33.333 0.00 0.00 0.00 3.18
306 337 8.024865 CAGATGAGCAGAACAATACAATTTTCA 58.975 33.333 0.00 0.00 0.00 2.69
471 505 0.974010 ATGGCCATTTGCTCCCACTG 60.974 55.000 14.09 0.00 40.92 3.66
485 519 1.669265 GCGGTACAAAACTAGATGGCC 59.331 52.381 0.00 0.00 0.00 5.36
549 586 7.771183 ACATAGAATTTTTATGCGTCCACATT 58.229 30.769 6.81 0.00 32.90 2.71
681 2205 5.324409 AGGGCAATATTCAGAAGTGTCAAA 58.676 37.500 0.00 0.00 0.00 2.69
844 3141 2.232452 AGTCGACTGGGCTATATGCATC 59.768 50.000 19.30 0.00 45.15 3.91
847 3144 2.821991 AAGTCGACTGGGCTATATGC 57.178 50.000 20.85 0.00 41.94 3.14
851 3148 1.183549 ACGAAAGTCGACTGGGCTAT 58.816 50.000 20.85 0.00 44.19 2.97
922 3219 3.055530 AGTGGATTGCGACTCTGAAGATT 60.056 43.478 0.00 0.00 0.00 2.40
1134 3450 1.572922 GTCGTCGTCGTCGTCGTAC 60.573 63.158 18.44 12.59 45.27 3.67
1143 3459 1.011463 ATCGGATTCGTCGTCGTCG 60.011 57.895 5.50 5.50 38.33 5.12
1144 3460 0.027194 TCATCGGATTCGTCGTCGTC 59.973 55.000 1.33 0.00 38.33 4.20
1145 3461 0.027716 CTCATCGGATTCGTCGTCGT 59.972 55.000 1.33 0.00 38.33 4.34
1170 3489 4.864219 TCCTCATGGTCTTCGTAGTACGAA 60.864 45.833 30.40 30.40 44.97 3.85
1188 3507 0.560193 CCTCCTCCTCCTCATCCTCA 59.440 60.000 0.00 0.00 0.00 3.86
1193 3512 0.859760 CTCCTCCTCCTCCTCCTCAT 59.140 60.000 0.00 0.00 0.00 2.90
1194 3513 1.292941 CCTCCTCCTCCTCCTCCTCA 61.293 65.000 0.00 0.00 0.00 3.86
1195 3514 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1196 3515 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1197 3516 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1361 3683 1.530013 AACAAGATGCAGCAGGTGGC 61.530 55.000 4.07 0.00 45.30 5.01
1362 3684 0.963962 AAACAAGATGCAGCAGGTGG 59.036 50.000 4.07 0.00 0.00 4.61
1367 3689 4.014569 TGGTAGTAAACAAGATGCAGCA 57.985 40.909 4.07 0.00 0.00 4.41
1368 3690 4.201950 CCATGGTAGTAAACAAGATGCAGC 60.202 45.833 2.57 0.00 0.00 5.25
1369 3691 4.336433 CCCATGGTAGTAAACAAGATGCAG 59.664 45.833 11.73 0.00 0.00 4.41
1370 3692 4.018870 TCCCATGGTAGTAAACAAGATGCA 60.019 41.667 11.73 0.00 0.00 3.96
1371 3693 4.335594 GTCCCATGGTAGTAAACAAGATGC 59.664 45.833 11.73 0.00 0.00 3.91
1372 3694 5.745227 AGTCCCATGGTAGTAAACAAGATG 58.255 41.667 11.73 0.00 0.00 2.90
1373 3695 6.388619 AAGTCCCATGGTAGTAAACAAGAT 57.611 37.500 11.73 0.00 0.00 2.40
1374 3696 5.836024 AAGTCCCATGGTAGTAAACAAGA 57.164 39.130 11.73 0.00 0.00 3.02
1375 3697 6.001460 TGAAAGTCCCATGGTAGTAAACAAG 58.999 40.000 11.73 0.00 0.00 3.16
1376 3698 5.942961 TGAAAGTCCCATGGTAGTAAACAA 58.057 37.500 11.73 0.00 0.00 2.83
1377 3699 5.570205 TGAAAGTCCCATGGTAGTAAACA 57.430 39.130 11.73 0.00 0.00 2.83
1378 3700 7.462571 AAATGAAAGTCCCATGGTAGTAAAC 57.537 36.000 11.73 0.00 0.00 2.01
1379 3701 9.184523 CATAAATGAAAGTCCCATGGTAGTAAA 57.815 33.333 11.73 0.00 0.00 2.01
1380 3702 8.333235 ACATAAATGAAAGTCCCATGGTAGTAA 58.667 33.333 11.73 0.00 0.00 2.24
1381 3703 7.867921 ACATAAATGAAAGTCCCATGGTAGTA 58.132 34.615 11.73 0.00 0.00 1.82
1382 3704 6.731467 ACATAAATGAAAGTCCCATGGTAGT 58.269 36.000 11.73 0.00 0.00 2.73
1383 3705 7.122650 ACAACATAAATGAAAGTCCCATGGTAG 59.877 37.037 11.73 0.00 0.00 3.18
1384 3706 6.951198 ACAACATAAATGAAAGTCCCATGGTA 59.049 34.615 11.73 0.00 0.00 3.25
1385 3707 5.779771 ACAACATAAATGAAAGTCCCATGGT 59.220 36.000 11.73 0.00 0.00 3.55
1386 3708 6.153340 AGACAACATAAATGAAAGTCCCATGG 59.847 38.462 4.14 4.14 31.79 3.66
1387 3709 7.161773 AGACAACATAAATGAAAGTCCCATG 57.838 36.000 0.00 0.00 31.79 3.66
1388 3710 6.378280 GGAGACAACATAAATGAAAGTCCCAT 59.622 38.462 0.00 0.00 31.79 4.00
1389 3711 5.710099 GGAGACAACATAAATGAAAGTCCCA 59.290 40.000 0.00 0.00 31.79 4.37
1390 3712 5.163754 CGGAGACAACATAAATGAAAGTCCC 60.164 44.000 0.00 4.99 31.79 4.46
1391 3713 5.673818 GCGGAGACAACATAAATGAAAGTCC 60.674 44.000 0.00 0.00 31.79 3.85
1392 3714 5.324697 GCGGAGACAACATAAATGAAAGTC 58.675 41.667 0.00 2.32 0.00 3.01
1393 3715 4.156008 GGCGGAGACAACATAAATGAAAGT 59.844 41.667 0.00 0.00 31.66 2.66
1394 3716 4.662145 GGCGGAGACAACATAAATGAAAG 58.338 43.478 0.00 0.00 31.66 2.62
1395 3717 4.695217 GGCGGAGACAACATAAATGAAA 57.305 40.909 0.00 0.00 31.66 2.69
1408 3730 0.601841 TCGAAAACCTTGGCGGAGAC 60.602 55.000 0.00 0.00 36.31 3.36
1409 3731 0.320421 CTCGAAAACCTTGGCGGAGA 60.320 55.000 0.00 0.00 36.31 3.71
1410 3732 0.602905 ACTCGAAAACCTTGGCGGAG 60.603 55.000 0.00 0.00 36.31 4.63
1411 3733 0.601841 GACTCGAAAACCTTGGCGGA 60.602 55.000 0.00 0.00 36.31 5.54
1412 3734 0.882927 TGACTCGAAAACCTTGGCGG 60.883 55.000 0.00 0.00 39.35 6.13
1413 3735 0.941542 TTGACTCGAAAACCTTGGCG 59.058 50.000 0.00 0.00 0.00 5.69
1414 3736 1.333791 CGTTGACTCGAAAACCTTGGC 60.334 52.381 0.00 0.00 0.00 4.52
1415 3737 2.206750 TCGTTGACTCGAAAACCTTGG 58.793 47.619 0.00 0.00 36.89 3.61
1416 3738 2.864343 ACTCGTTGACTCGAAAACCTTG 59.136 45.455 0.00 0.00 39.34 3.61
1417 3739 3.121544 GACTCGTTGACTCGAAAACCTT 58.878 45.455 0.00 0.00 39.34 3.50
1418 3740 2.100252 TGACTCGTTGACTCGAAAACCT 59.900 45.455 0.00 0.00 39.34 3.50
1419 3741 2.466846 TGACTCGTTGACTCGAAAACC 58.533 47.619 0.00 0.00 39.34 3.27
1420 3742 4.444720 AGAATGACTCGTTGACTCGAAAAC 59.555 41.667 0.00 0.00 39.34 2.43
1421 3743 4.444388 CAGAATGACTCGTTGACTCGAAAA 59.556 41.667 0.00 0.00 39.69 2.29
1422 3744 3.981416 CAGAATGACTCGTTGACTCGAAA 59.019 43.478 0.00 0.00 39.69 3.46
1423 3745 3.565516 CAGAATGACTCGTTGACTCGAA 58.434 45.455 0.00 0.00 39.69 3.71
1424 3746 2.095212 CCAGAATGACTCGTTGACTCGA 60.095 50.000 0.00 0.00 39.69 4.04
1425 3747 2.254459 CCAGAATGACTCGTTGACTCG 58.746 52.381 0.00 0.00 39.69 4.18
1426 3748 2.028930 ACCCAGAATGACTCGTTGACTC 60.029 50.000 0.00 0.00 39.69 3.36
1427 3749 1.971357 ACCCAGAATGACTCGTTGACT 59.029 47.619 0.00 0.00 39.69 3.41
1428 3750 2.457366 ACCCAGAATGACTCGTTGAC 57.543 50.000 0.00 0.00 39.69 3.18
1429 3751 2.094182 GCTACCCAGAATGACTCGTTGA 60.094 50.000 0.00 0.00 39.69 3.18
1430 3752 2.271800 GCTACCCAGAATGACTCGTTG 58.728 52.381 0.00 0.00 39.69 4.10
1431 3753 1.135083 CGCTACCCAGAATGACTCGTT 60.135 52.381 0.00 0.00 39.69 3.85
1432 3754 0.456221 CGCTACCCAGAATGACTCGT 59.544 55.000 0.00 0.00 39.69 4.18
1433 3755 0.738975 TCGCTACCCAGAATGACTCG 59.261 55.000 0.00 0.00 39.69 4.18
1434 3756 1.751924 AGTCGCTACCCAGAATGACTC 59.248 52.381 0.00 0.00 39.69 3.36
1435 3757 1.751924 GAGTCGCTACCCAGAATGACT 59.248 52.381 0.00 0.00 39.69 3.41
1436 3758 1.751924 AGAGTCGCTACCCAGAATGAC 59.248 52.381 0.00 0.00 39.69 3.06
1437 3759 2.145397 AGAGTCGCTACCCAGAATGA 57.855 50.000 0.00 0.00 39.69 2.57
1438 3760 2.166459 TCAAGAGTCGCTACCCAGAATG 59.834 50.000 0.00 0.00 0.00 2.67
1439 3761 2.166664 GTCAAGAGTCGCTACCCAGAAT 59.833 50.000 0.00 0.00 0.00 2.40
1440 3762 1.544691 GTCAAGAGTCGCTACCCAGAA 59.455 52.381 0.00 0.00 0.00 3.02
1441 3763 1.174783 GTCAAGAGTCGCTACCCAGA 58.825 55.000 0.00 0.00 0.00 3.86
1442 3764 0.179161 CGTCAAGAGTCGCTACCCAG 60.179 60.000 0.00 0.00 0.00 4.45
1443 3765 0.607217 TCGTCAAGAGTCGCTACCCA 60.607 55.000 0.00 0.00 0.00 4.51
1444 3766 0.099082 CTCGTCAAGAGTCGCTACCC 59.901 60.000 0.00 0.00 41.99 3.69
1445 3767 3.607777 CTCGTCAAGAGTCGCTACC 57.392 57.895 0.00 0.00 41.99 3.18
1454 3776 1.835121 CACAACACGACTCGTCAAGA 58.165 50.000 0.00 0.00 38.32 3.02
1455 3777 0.229753 GCACAACACGACTCGTCAAG 59.770 55.000 0.00 0.00 38.32 3.02
1456 3778 1.149361 GGCACAACACGACTCGTCAA 61.149 55.000 0.00 0.00 38.32 3.18
1457 3779 1.590525 GGCACAACACGACTCGTCA 60.591 57.895 0.00 0.00 38.32 4.35
1458 3780 2.645510 CGGCACAACACGACTCGTC 61.646 63.158 0.00 0.00 38.32 4.20
1459 3781 2.657296 CGGCACAACACGACTCGT 60.657 61.111 0.00 0.00 42.36 4.18
1460 3782 4.059459 GCGGCACAACACGACTCG 62.059 66.667 0.00 0.00 0.00 4.18
1461 3783 2.661866 AGCGGCACAACACGACTC 60.662 61.111 1.45 0.00 0.00 3.36
1462 3784 2.967076 CAGCGGCACAACACGACT 60.967 61.111 1.45 0.00 0.00 4.18
1463 3785 4.012895 CCAGCGGCACAACACGAC 62.013 66.667 1.45 0.00 0.00 4.34
1464 3786 4.228567 TCCAGCGGCACAACACGA 62.229 61.111 1.45 0.00 0.00 4.35
1465 3787 4.012895 GTCCAGCGGCACAACACG 62.013 66.667 1.45 0.00 0.00 4.49
1466 3788 1.291877 CTAGTCCAGCGGCACAACAC 61.292 60.000 1.45 0.00 0.00 3.32
1467 3789 1.005037 CTAGTCCAGCGGCACAACA 60.005 57.895 1.45 0.00 0.00 3.33
1468 3790 1.004918 ACTAGTCCAGCGGCACAAC 60.005 57.895 1.45 0.00 0.00 3.32
1469 3791 1.292223 GACTAGTCCAGCGGCACAA 59.708 57.895 12.13 0.00 0.00 3.33
1470 3792 2.970639 GACTAGTCCAGCGGCACA 59.029 61.111 12.13 0.00 0.00 4.57
1471 3793 2.202623 CGACTAGTCCAGCGGCAC 60.203 66.667 17.23 0.00 0.00 5.01
1472 3794 2.360726 TCGACTAGTCCAGCGGCA 60.361 61.111 17.23 0.00 0.00 5.69
1473 3795 2.409651 CTCGACTAGTCCAGCGGC 59.590 66.667 17.23 0.00 0.00 6.53
1474 3796 1.749638 ACCTCGACTAGTCCAGCGG 60.750 63.158 17.23 13.54 0.00 5.52
1475 3797 1.306642 ACACCTCGACTAGTCCAGCG 61.307 60.000 17.23 9.89 0.00 5.18
1476 3798 0.889306 AACACCTCGACTAGTCCAGC 59.111 55.000 17.23 0.00 0.00 4.85
1477 3799 2.557056 TCAAACACCTCGACTAGTCCAG 59.443 50.000 17.23 13.67 0.00 3.86
1478 3800 2.295349 GTCAAACACCTCGACTAGTCCA 59.705 50.000 17.23 3.38 0.00 4.02
1479 3801 2.352519 GGTCAAACACCTCGACTAGTCC 60.353 54.545 17.23 0.00 42.84 3.85
1480 3802 2.667724 CGGTCAAACACCTCGACTAGTC 60.668 54.545 13.18 13.18 44.21 2.59
1481 3803 1.268899 CGGTCAAACACCTCGACTAGT 59.731 52.381 0.00 0.00 44.21 2.57
1482 3804 1.538512 TCGGTCAAACACCTCGACTAG 59.461 52.381 0.00 0.00 44.21 2.57
1483 3805 1.267806 GTCGGTCAAACACCTCGACTA 59.732 52.381 0.00 0.00 44.21 2.59
1484 3806 0.031721 GTCGGTCAAACACCTCGACT 59.968 55.000 0.00 0.00 44.21 4.18
1485 3807 2.514267 GTCGGTCAAACACCTCGAC 58.486 57.895 0.00 0.00 44.21 4.20
1486 3808 0.748450 AAGTCGGTCAAACACCTCGA 59.252 50.000 0.00 0.00 44.21 4.04
1487 3809 0.859232 CAAGTCGGTCAAACACCTCG 59.141 55.000 0.00 0.00 44.21 4.63
1488 3810 0.586802 GCAAGTCGGTCAAACACCTC 59.413 55.000 0.00 0.00 44.21 3.85
1489 3811 0.107410 TGCAAGTCGGTCAAACACCT 60.107 50.000 0.00 0.00 44.21 4.00
1490 3812 0.307760 CTGCAAGTCGGTCAAACACC 59.692 55.000 0.00 0.00 42.69 4.16
1491 3813 3.825812 CTGCAAGTCGGTCAAACAC 57.174 52.632 0.00 0.00 0.00 3.32
1500 3822 4.794449 CGATGAGTCGTAACTGCAAGTCG 61.794 52.174 0.00 0.00 45.03 4.18
1501 3823 2.594654 CGATGAGTCGTAACTGCAAGTC 59.405 50.000 0.00 0.00 45.03 3.01
1502 3824 2.596452 CGATGAGTCGTAACTGCAAGT 58.404 47.619 0.00 0.00 46.73 3.16
1503 3825 1.920574 CCGATGAGTCGTAACTGCAAG 59.079 52.381 0.00 0.00 46.25 4.01
1504 3826 1.990799 CCGATGAGTCGTAACTGCAA 58.009 50.000 0.00 0.00 46.25 4.08
1505 3827 0.457853 GCCGATGAGTCGTAACTGCA 60.458 55.000 0.00 0.00 46.25 4.41
1506 3828 0.179134 AGCCGATGAGTCGTAACTGC 60.179 55.000 0.00 0.00 46.25 4.40
1507 3829 2.355132 ACTAGCCGATGAGTCGTAACTG 59.645 50.000 0.00 0.00 46.25 3.16
1508 3830 2.355132 CACTAGCCGATGAGTCGTAACT 59.645 50.000 0.00 0.00 46.25 2.24
1509 3831 2.541178 CCACTAGCCGATGAGTCGTAAC 60.541 54.545 0.00 0.00 46.25 2.50
1510 3832 1.674441 CCACTAGCCGATGAGTCGTAA 59.326 52.381 0.00 0.00 46.25 3.18
1511 3833 1.134310 TCCACTAGCCGATGAGTCGTA 60.134 52.381 0.00 0.00 46.25 3.43
1512 3834 0.393944 TCCACTAGCCGATGAGTCGT 60.394 55.000 0.00 0.00 46.25 4.34
1514 3836 0.029567 CGTCCACTAGCCGATGAGTC 59.970 60.000 0.00 0.00 0.00 3.36
1515 3837 0.393944 TCGTCCACTAGCCGATGAGT 60.394 55.000 0.00 0.00 0.00 3.41
1516 3838 0.029567 GTCGTCCACTAGCCGATGAG 59.970 60.000 2.55 0.00 32.68 2.90
1517 3839 0.678684 TGTCGTCCACTAGCCGATGA 60.679 55.000 0.00 0.00 32.68 2.92
1518 3840 0.248661 CTGTCGTCCACTAGCCGATG 60.249 60.000 0.00 0.00 32.68 3.84
1519 3841 2.005960 GCTGTCGTCCACTAGCCGAT 62.006 60.000 0.00 0.00 32.68 4.18
1520 3842 2.697761 GCTGTCGTCCACTAGCCGA 61.698 63.158 0.00 0.00 0.00 5.54
1521 3843 2.202623 GCTGTCGTCCACTAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
1523 3845 2.184579 GGGCTGTCGTCCACTAGC 59.815 66.667 0.00 0.00 34.11 3.42
1524 3846 0.965866 TGAGGGCTGTCGTCCACTAG 60.966 60.000 0.00 0.00 37.38 2.57
1525 3847 0.324368 ATGAGGGCTGTCGTCCACTA 60.324 55.000 0.00 0.00 37.38 2.74
1526 3848 1.610673 ATGAGGGCTGTCGTCCACT 60.611 57.895 0.00 0.00 37.38 4.00
1527 3849 1.448540 CATGAGGGCTGTCGTCCAC 60.449 63.158 0.00 0.00 37.38 4.02
1528 3850 1.607801 CTCATGAGGGCTGTCGTCCA 61.608 60.000 15.38 0.00 37.38 4.02
1529 3851 1.142748 CTCATGAGGGCTGTCGTCC 59.857 63.158 15.38 0.00 34.14 4.79
1530 3852 0.247736 AACTCATGAGGGCTGTCGTC 59.752 55.000 26.08 0.00 0.00 4.20
1531 3853 0.687354 AAACTCATGAGGGCTGTCGT 59.313 50.000 26.08 0.71 0.00 4.34
1532 3854 1.813513 AAAACTCATGAGGGCTGTCG 58.186 50.000 26.08 0.02 0.00 4.35
1549 3871 7.408756 AAGTGATTGATAGCATGGCTAAAAA 57.591 32.000 1.63 0.92 44.62 1.94
1550 3872 6.238456 CGAAGTGATTGATAGCATGGCTAAAA 60.238 38.462 1.63 1.25 44.62 1.52
1551 3873 5.237127 CGAAGTGATTGATAGCATGGCTAAA 59.763 40.000 1.63 0.00 44.62 1.85
1552 3874 4.751600 CGAAGTGATTGATAGCATGGCTAA 59.248 41.667 1.63 0.00 44.62 3.09
1553 3875 4.309933 CGAAGTGATTGATAGCATGGCTA 58.690 43.478 0.00 0.00 45.55 3.93
1554 3876 3.136763 CGAAGTGATTGATAGCATGGCT 58.863 45.455 0.00 0.00 43.41 4.75
1555 3877 2.225019 CCGAAGTGATTGATAGCATGGC 59.775 50.000 0.00 0.00 0.00 4.40
1556 3878 3.470709 ACCGAAGTGATTGATAGCATGG 58.529 45.455 0.00 0.00 0.00 3.66
1576 3898 3.223589 GTGTGTGGGTTGGGGCAC 61.224 66.667 0.00 0.00 0.00 5.01
1577 3899 1.720077 TATGTGTGTGGGTTGGGGCA 61.720 55.000 0.00 0.00 0.00 5.36
1578 3900 0.324275 ATATGTGTGTGGGTTGGGGC 60.324 55.000 0.00 0.00 0.00 5.80
1579 3901 2.025793 TGTATATGTGTGTGGGTTGGGG 60.026 50.000 0.00 0.00 0.00 4.96
1580 3902 3.013921 GTGTATATGTGTGTGGGTTGGG 58.986 50.000 0.00 0.00 0.00 4.12
1581 3903 3.689161 CAGTGTATATGTGTGTGGGTTGG 59.311 47.826 0.00 0.00 0.00 3.77
1582 3904 3.126858 GCAGTGTATATGTGTGTGGGTTG 59.873 47.826 0.00 0.00 0.00 3.77
1583 3905 3.343617 GCAGTGTATATGTGTGTGGGTT 58.656 45.455 0.00 0.00 0.00 4.11
1584 3906 2.355716 GGCAGTGTATATGTGTGTGGGT 60.356 50.000 0.00 0.00 0.00 4.51
1585 3907 2.288666 GGCAGTGTATATGTGTGTGGG 58.711 52.381 0.00 0.00 0.00 4.61
1586 3908 2.984562 TGGCAGTGTATATGTGTGTGG 58.015 47.619 0.00 0.00 0.00 4.17
1587 3909 4.379394 GGTTTGGCAGTGTATATGTGTGTG 60.379 45.833 0.00 0.00 0.00 3.82
1588 3910 3.756434 GGTTTGGCAGTGTATATGTGTGT 59.244 43.478 0.00 0.00 0.00 3.72
1589 3911 4.009675 AGGTTTGGCAGTGTATATGTGTG 58.990 43.478 0.00 0.00 0.00 3.82
1590 3912 4.301072 AGGTTTGGCAGTGTATATGTGT 57.699 40.909 0.00 0.00 0.00 3.72
1591 3913 4.458989 ACAAGGTTTGGCAGTGTATATGTG 59.541 41.667 0.00 0.00 34.12 3.21
1592 3914 4.662278 ACAAGGTTTGGCAGTGTATATGT 58.338 39.130 0.00 0.00 34.12 2.29
1593 3915 4.699735 TGACAAGGTTTGGCAGTGTATATG 59.300 41.667 0.00 0.00 45.57 1.78
1594 3916 4.917385 TGACAAGGTTTGGCAGTGTATAT 58.083 39.130 0.00 0.00 45.57 0.86
1595 3917 4.359434 TGACAAGGTTTGGCAGTGTATA 57.641 40.909 0.00 0.00 45.57 1.47
1596 3918 3.222173 TGACAAGGTTTGGCAGTGTAT 57.778 42.857 0.00 0.00 45.57 2.29
1597 3919 2.719531 TGACAAGGTTTGGCAGTGTA 57.280 45.000 0.00 0.00 45.57 2.90
1598 3920 3.586843 TGACAAGGTTTGGCAGTGT 57.413 47.368 0.00 0.00 45.57 3.55
1603 3925 2.029918 CCTTAAGCTGACAAGGTTTGGC 60.030 50.000 11.98 0.00 41.32 4.52
1604 3926 3.923017 CCTTAAGCTGACAAGGTTTGG 57.077 47.619 11.98 0.00 41.32 3.28
1609 3931 5.063880 AGTTGTTACCTTAAGCTGACAAGG 58.936 41.667 16.63 16.63 45.73 3.61
1610 3932 5.992217 AGAGTTGTTACCTTAAGCTGACAAG 59.008 40.000 8.05 0.00 0.00 3.16
1611 3933 5.758296 CAGAGTTGTTACCTTAAGCTGACAA 59.242 40.000 4.48 4.48 0.00 3.18
1612 3934 5.163343 ACAGAGTTGTTACCTTAAGCTGACA 60.163 40.000 0.00 0.00 32.28 3.58
1613 3935 5.298347 ACAGAGTTGTTACCTTAAGCTGAC 58.702 41.667 0.00 0.00 32.28 3.51
1614 3936 5.546621 ACAGAGTTGTTACCTTAAGCTGA 57.453 39.130 0.00 0.00 32.28 4.26
1615 3937 5.869888 CCTACAGAGTTGTTACCTTAAGCTG 59.130 44.000 0.00 0.00 38.76 4.24
1616 3938 5.569026 GCCTACAGAGTTGTTACCTTAAGCT 60.569 44.000 0.00 0.00 38.76 3.74
1617 3939 4.630505 GCCTACAGAGTTGTTACCTTAAGC 59.369 45.833 0.00 0.00 38.76 3.09
1618 3940 4.863131 CGCCTACAGAGTTGTTACCTTAAG 59.137 45.833 0.00 0.00 38.76 1.85
1619 3941 4.813027 CGCCTACAGAGTTGTTACCTTAA 58.187 43.478 0.00 0.00 38.76 1.85
1620 3942 3.367703 GCGCCTACAGAGTTGTTACCTTA 60.368 47.826 0.00 0.00 38.76 2.69
1621 3943 2.612221 GCGCCTACAGAGTTGTTACCTT 60.612 50.000 0.00 0.00 38.76 3.50
1622 3944 1.067071 GCGCCTACAGAGTTGTTACCT 60.067 52.381 0.00 0.00 38.76 3.08
1623 3945 1.337447 TGCGCCTACAGAGTTGTTACC 60.337 52.381 4.18 0.00 38.76 2.85
1624 3946 2.074547 TGCGCCTACAGAGTTGTTAC 57.925 50.000 4.18 0.00 38.76 2.50
1625 3947 2.496070 AGATGCGCCTACAGAGTTGTTA 59.504 45.455 4.18 0.00 38.76 2.41
1626 3948 1.276421 AGATGCGCCTACAGAGTTGTT 59.724 47.619 4.18 0.00 38.76 2.83
1627 3949 0.898320 AGATGCGCCTACAGAGTTGT 59.102 50.000 4.18 0.00 41.39 3.32
1628 3950 1.284657 CAGATGCGCCTACAGAGTTG 58.715 55.000 4.18 0.00 0.00 3.16
1629 3951 0.176680 CCAGATGCGCCTACAGAGTT 59.823 55.000 4.18 0.00 0.00 3.01
1630 3952 0.972983 ACCAGATGCGCCTACAGAGT 60.973 55.000 4.18 0.00 0.00 3.24
1631 3953 0.176680 AACCAGATGCGCCTACAGAG 59.823 55.000 4.18 0.00 0.00 3.35
1632 3954 0.175760 GAACCAGATGCGCCTACAGA 59.824 55.000 4.18 0.00 0.00 3.41
1633 3955 0.176680 AGAACCAGATGCGCCTACAG 59.823 55.000 4.18 0.00 0.00 2.74
1634 3956 0.108186 CAGAACCAGATGCGCCTACA 60.108 55.000 4.18 0.00 0.00 2.74
1635 3957 0.811616 CCAGAACCAGATGCGCCTAC 60.812 60.000 4.18 0.00 0.00 3.18
1636 3958 1.264749 ACCAGAACCAGATGCGCCTA 61.265 55.000 4.18 0.00 0.00 3.93
1637 3959 2.270205 CCAGAACCAGATGCGCCT 59.730 61.111 4.18 0.00 0.00 5.52
1638 3960 2.045926 ACCAGAACCAGATGCGCC 60.046 61.111 4.18 0.00 0.00 6.53
1639 3961 1.639298 GACACCAGAACCAGATGCGC 61.639 60.000 0.00 0.00 0.00 6.09
1640 3962 1.354337 CGACACCAGAACCAGATGCG 61.354 60.000 0.00 0.00 0.00 4.73
1641 3963 0.320771 ACGACACCAGAACCAGATGC 60.321 55.000 0.00 0.00 0.00 3.91
1642 3964 2.069273 GAACGACACCAGAACCAGATG 58.931 52.381 0.00 0.00 0.00 2.90
1643 3965 1.971357 AGAACGACACCAGAACCAGAT 59.029 47.619 0.00 0.00 0.00 2.90
1644 3966 1.068588 CAGAACGACACCAGAACCAGA 59.931 52.381 0.00 0.00 0.00 3.86
1645 3967 1.068588 TCAGAACGACACCAGAACCAG 59.931 52.381 0.00 0.00 0.00 4.00
1646 3968 1.116308 TCAGAACGACACCAGAACCA 58.884 50.000 0.00 0.00 0.00 3.67
1647 3969 2.338500 GATCAGAACGACACCAGAACC 58.662 52.381 0.00 0.00 0.00 3.62
1648 3970 1.986378 CGATCAGAACGACACCAGAAC 59.014 52.381 0.00 0.00 0.00 3.01
1649 3971 1.611977 ACGATCAGAACGACACCAGAA 59.388 47.619 7.14 0.00 34.70 3.02
1650 3972 1.244816 ACGATCAGAACGACACCAGA 58.755 50.000 7.14 0.00 34.70 3.86
1651 3973 2.478031 CCTACGATCAGAACGACACCAG 60.478 54.545 7.14 0.00 34.70 4.00
1652 3974 1.471287 CCTACGATCAGAACGACACCA 59.529 52.381 7.14 0.00 34.70 4.17
1653 3975 1.202268 CCCTACGATCAGAACGACACC 60.202 57.143 7.14 0.00 34.70 4.16
1654 3976 1.798079 GCCCTACGATCAGAACGACAC 60.798 57.143 7.14 0.00 34.70 3.67
1655 3977 0.454600 GCCCTACGATCAGAACGACA 59.545 55.000 7.14 0.00 34.70 4.35
1656 3978 0.454600 TGCCCTACGATCAGAACGAC 59.545 55.000 7.14 0.00 34.70 4.34
1657 3979 0.454600 GTGCCCTACGATCAGAACGA 59.545 55.000 7.14 0.00 34.70 3.85
1658 3980 0.456221 AGTGCCCTACGATCAGAACG 59.544 55.000 0.00 0.00 0.00 3.95
1659 3981 1.927895 CAGTGCCCTACGATCAGAAC 58.072 55.000 0.00 0.00 0.00 3.01
1660 3982 0.175760 GCAGTGCCCTACGATCAGAA 59.824 55.000 2.85 0.00 0.00 3.02
1661 3983 0.684479 AGCAGTGCCCTACGATCAGA 60.684 55.000 12.58 0.00 0.00 3.27
1662 3984 0.529337 CAGCAGTGCCCTACGATCAG 60.529 60.000 12.58 0.00 0.00 2.90
1663 3985 0.970427 TCAGCAGTGCCCTACGATCA 60.970 55.000 12.58 0.00 0.00 2.92
1664 3986 0.175760 TTCAGCAGTGCCCTACGATC 59.824 55.000 12.58 0.00 0.00 3.69
1665 3987 0.108138 GTTCAGCAGTGCCCTACGAT 60.108 55.000 12.58 0.00 0.00 3.73
1666 3988 1.185618 AGTTCAGCAGTGCCCTACGA 61.186 55.000 12.58 0.00 0.00 3.43
1667 3989 0.737715 GAGTTCAGCAGTGCCCTACG 60.738 60.000 12.58 0.00 0.00 3.51
1668 3990 0.391793 GGAGTTCAGCAGTGCCCTAC 60.392 60.000 12.58 7.23 0.00 3.18
1669 3991 0.835971 TGGAGTTCAGCAGTGCCCTA 60.836 55.000 12.58 0.00 0.00 3.53
1670 3992 2.121992 CTGGAGTTCAGCAGTGCCCT 62.122 60.000 12.58 2.46 36.60 5.19
1671 3993 1.673665 CTGGAGTTCAGCAGTGCCC 60.674 63.158 12.58 5.10 36.60 5.36
1672 3994 1.673665 CCTGGAGTTCAGCAGTGCC 60.674 63.158 12.58 0.00 42.05 5.01
1673 3995 1.673665 CCCTGGAGTTCAGCAGTGC 60.674 63.158 7.13 7.13 42.05 4.40
1674 3996 1.002868 CCCCTGGAGTTCAGCAGTG 60.003 63.158 0.00 0.00 42.05 3.66
1675 3997 1.462238 ACCCCTGGAGTTCAGCAGT 60.462 57.895 0.00 0.00 42.05 4.40
1676 3998 1.002868 CACCCCTGGAGTTCAGCAG 60.003 63.158 0.00 0.00 42.05 4.24
1677 3999 1.352622 AACACCCCTGGAGTTCAGCA 61.353 55.000 0.00 0.00 42.05 4.41
1678 4000 0.690762 TAACACCCCTGGAGTTCAGC 59.309 55.000 0.00 0.00 42.05 4.26
1679 4001 1.697432 TGTAACACCCCTGGAGTTCAG 59.303 52.381 0.00 0.00 37.62 3.02
1680 4002 1.809133 TGTAACACCCCTGGAGTTCA 58.191 50.000 0.00 0.00 37.62 3.18
1681 4003 4.772886 ATATGTAACACCCCTGGAGTTC 57.227 45.455 0.00 0.00 37.62 3.01
1682 4004 4.538490 TCAATATGTAACACCCCTGGAGTT 59.462 41.667 0.00 0.00 39.60 3.01
1683 4005 4.108570 TCAATATGTAACACCCCTGGAGT 58.891 43.478 0.00 0.00 0.00 3.85
1684 4006 4.771114 TCAATATGTAACACCCCTGGAG 57.229 45.455 0.00 0.00 0.00 3.86
1685 4007 5.522315 TTTCAATATGTAACACCCCTGGA 57.478 39.130 0.00 0.00 0.00 3.86
1686 4008 6.790232 AATTTCAATATGTAACACCCCTGG 57.210 37.500 0.00 0.00 0.00 4.45
1687 4009 7.093552 TGGAAATTTCAATATGTAACACCCCTG 60.094 37.037 19.49 0.00 0.00 4.45
1688 4010 6.957020 TGGAAATTTCAATATGTAACACCCCT 59.043 34.615 19.49 0.00 0.00 4.79
1689 4011 7.176589 TGGAAATTTCAATATGTAACACCCC 57.823 36.000 19.49 0.00 0.00 4.95
1690 4012 8.474025 TGATGGAAATTTCAATATGTAACACCC 58.526 33.333 19.49 0.00 0.00 4.61
1691 4013 9.520204 CTGATGGAAATTTCAATATGTAACACC 57.480 33.333 19.49 0.13 0.00 4.16
1698 4020 9.655769 CGTACTTCTGATGGAAATTTCAATATG 57.344 33.333 19.49 9.97 33.07 1.78
1699 4021 9.613428 TCGTACTTCTGATGGAAATTTCAATAT 57.387 29.630 19.49 10.36 33.07 1.28
1700 4022 9.613428 ATCGTACTTCTGATGGAAATTTCAATA 57.387 29.630 19.49 6.06 33.07 1.90
1701 4023 7.921786 TCGTACTTCTGATGGAAATTTCAAT 57.078 32.000 19.49 14.06 33.07 2.57
1702 4024 7.824289 AGATCGTACTTCTGATGGAAATTTCAA 59.176 33.333 19.49 9.26 33.07 2.69
1703 4025 7.331026 AGATCGTACTTCTGATGGAAATTTCA 58.669 34.615 19.49 6.65 33.07 2.69
1704 4026 7.778470 AGATCGTACTTCTGATGGAAATTTC 57.222 36.000 9.83 9.83 33.07 2.17
1705 4027 8.567285 AAAGATCGTACTTCTGATGGAAATTT 57.433 30.769 0.00 0.00 33.07 1.82
1706 4028 8.567285 AAAAGATCGTACTTCTGATGGAAATT 57.433 30.769 0.00 0.00 33.07 1.82
1707 4029 8.567285 AAAAAGATCGTACTTCTGATGGAAAT 57.433 30.769 0.00 0.00 33.07 2.17
1708 4030 7.979444 AAAAAGATCGTACTTCTGATGGAAA 57.021 32.000 0.00 0.00 33.07 3.13
1709 4031 8.092068 TGTAAAAAGATCGTACTTCTGATGGAA 58.908 33.333 0.00 0.00 0.00 3.53
1710 4032 7.608153 TGTAAAAAGATCGTACTTCTGATGGA 58.392 34.615 0.00 0.00 0.00 3.41
1711 4033 7.827819 TGTAAAAAGATCGTACTTCTGATGG 57.172 36.000 0.00 0.00 0.00 3.51
1712 4034 8.926710 ACTTGTAAAAAGATCGTACTTCTGATG 58.073 33.333 0.00 0.00 0.00 3.07
1714 4036 9.970395 TTACTTGTAAAAAGATCGTACTTCTGA 57.030 29.630 0.00 0.00 0.00 3.27
1732 4054 8.995220 GGACACATTGTTGAGTTATTACTTGTA 58.005 33.333 0.00 0.00 33.84 2.41
1733 4055 7.500892 TGGACACATTGTTGAGTTATTACTTGT 59.499 33.333 0.00 0.00 33.84 3.16
1734 4056 7.870826 TGGACACATTGTTGAGTTATTACTTG 58.129 34.615 0.00 0.00 33.84 3.16
1735 4057 8.458573 TTGGACACATTGTTGAGTTATTACTT 57.541 30.769 0.00 0.00 33.84 2.24
1736 4058 8.458573 TTTGGACACATTGTTGAGTTATTACT 57.541 30.769 0.00 0.00 37.31 2.24
1737 4059 9.522804 TTTTTGGACACATTGTTGAGTTATTAC 57.477 29.630 0.00 0.00 0.00 1.89
1774 4096 9.542462 TGAGTCATATGTACTTGTAAAATAGGC 57.458 33.333 1.90 0.00 0.00 3.93
1840 4168 4.656112 ACTAGTAGTAGGCATGCAGGATTT 59.344 41.667 21.36 1.98 0.00 2.17
1858 4186 2.444421 CGTAGTTGGACCCAGACTAGT 58.556 52.381 0.00 0.00 0.00 2.57
1860 4188 1.180029 GCGTAGTTGGACCCAGACTA 58.820 55.000 0.00 6.86 0.00 2.59
1867 4195 0.248949 GATCGAGGCGTAGTTGGACC 60.249 60.000 0.00 0.00 0.00 4.46
1900 4228 1.400494 GCATGGTTTGTGTCCGTATCC 59.600 52.381 0.00 0.00 0.00 2.59
1933 4261 7.445945 AGAAAACTAGCAGCCAACCTATATAG 58.554 38.462 2.46 2.46 0.00 1.31
1934 4262 7.374975 AGAAAACTAGCAGCCAACCTATATA 57.625 36.000 0.00 0.00 0.00 0.86
1935 4263 6.253946 AGAAAACTAGCAGCCAACCTATAT 57.746 37.500 0.00 0.00 0.00 0.86
1936 4264 5.693769 AGAAAACTAGCAGCCAACCTATA 57.306 39.130 0.00 0.00 0.00 1.31
1937 4265 4.576330 AGAAAACTAGCAGCCAACCTAT 57.424 40.909 0.00 0.00 0.00 2.57
1938 4266 4.367039 AAGAAAACTAGCAGCCAACCTA 57.633 40.909 0.00 0.00 0.00 3.08
1939 4267 2.959465 AGAAAACTAGCAGCCAACCT 57.041 45.000 0.00 0.00 0.00 3.50
1940 4268 4.051237 CAAAAGAAAACTAGCAGCCAACC 58.949 43.478 0.00 0.00 0.00 3.77
1941 4269 4.740205 GTCAAAAGAAAACTAGCAGCCAAC 59.260 41.667 0.00 0.00 0.00 3.77
1977 4318 8.552865 AGATCAAGCTATATATACGAACTAGCG 58.447 37.037 0.00 0.00 39.74 4.26
1986 4327 6.419413 GCGCTGGAAGATCAAGCTATATATAC 59.581 42.308 0.00 0.00 34.07 1.47
1987 4328 6.322456 AGCGCTGGAAGATCAAGCTATATATA 59.678 38.462 10.39 0.00 34.07 0.86
1998 4347 0.530744 ACGTAAGCGCTGGAAGATCA 59.469 50.000 12.58 0.00 42.83 2.92
2050 4411 1.472376 GGGCCGATCTGAAGAGACTTG 60.472 57.143 0.00 0.00 0.00 3.16
2076 4445 2.733593 GTCGCACCGGAGACACAC 60.734 66.667 9.46 0.00 42.61 3.82
2077 4446 4.337060 CGTCGCACCGGAGACACA 62.337 66.667 9.46 0.00 43.14 3.72
2175 4552 3.117171 CGGAGGACGTCGACGAGT 61.117 66.667 41.52 25.22 43.02 4.18
2259 4636 0.105401 TGTGTAGGAGGTGGTGGTCA 60.105 55.000 0.00 0.00 0.00 4.02
2278 4655 2.113052 TGGGAAGTAGGTGTAGAAGGGT 59.887 50.000 0.00 0.00 0.00 4.34
2372 4755 3.706373 CCGGGTCAGTGGGTCCAG 61.706 72.222 0.00 0.00 0.00 3.86
2397 4780 5.107104 TGTTAGTGCAAATCAATCACGTCTC 60.107 40.000 0.00 0.00 35.97 3.36
2398 4781 4.754618 TGTTAGTGCAAATCAATCACGTCT 59.245 37.500 0.00 0.00 35.97 4.18
2427 4824 3.055021 TCCAATATCGTTGTACAAGGCCA 60.055 43.478 20.77 12.26 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.