Multiple sequence alignment - TraesCS4D01G355700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G355700 chr4D 100.000 2807 0 0 1 2807 504995489 504998295 0.000000e+00 5184.0
1 TraesCS4D01G355700 chr4D 91.254 1292 71 23 709 1982 504344626 504345893 0.000000e+00 1722.0
2 TraesCS4D01G355700 chr4D 91.311 1289 70 24 712 1982 505189769 505188505 0.000000e+00 1722.0
3 TraesCS4D01G355700 chr4D 77.948 653 111 22 5 643 288214709 288215342 7.340000e-101 377.0
4 TraesCS4D01G355700 chr5A 90.018 2234 136 36 318 2488 689298395 689300604 0.000000e+00 2809.0
5 TraesCS4D01G355700 chr5A 93.279 982 39 10 1005 1982 688989536 688990494 0.000000e+00 1423.0
6 TraesCS4D01G355700 chr5A 84.521 491 63 10 1495 1982 689028689 689029169 9.100000e-130 473.0
7 TraesCS4D01G355700 chr5A 80.653 429 78 4 216 643 602921658 602922082 7.500000e-86 327.0
8 TraesCS4D01G355700 chr5A 91.824 159 10 2 709 867 688989268 688989423 4.710000e-53 219.0
9 TraesCS4D01G355700 chr5A 98.361 61 1 0 2489 2549 689300584 689300644 1.060000e-19 108.0
10 TraesCS4D01G355700 chr4B 94.854 991 38 3 1005 1982 651752934 651753924 0.000000e+00 1535.0
11 TraesCS4D01G355700 chr4B 94.652 991 40 3 1005 1982 651770217 651769227 0.000000e+00 1524.0
12 TraesCS4D01G355700 chr4B 97.206 859 20 1 1005 1859 651022026 651022884 0.000000e+00 1450.0
13 TraesCS4D01G355700 chr4B 91.152 599 46 5 1309 1906 651768745 651768153 0.000000e+00 806.0
14 TraesCS4D01G355700 chr4B 85.969 392 35 1 1 372 651751791 651752182 4.360000e-108 401.0
15 TraesCS4D01G355700 chr4B 87.582 153 10 3 709 852 651752652 651752804 4.810000e-38 169.0
16 TraesCS4D01G355700 chr4B 88.000 150 9 3 712 852 651770496 651770347 4.810000e-38 169.0
17 TraesCS4D01G355700 chr7D 77.868 619 113 16 39 643 461668538 461667930 2.060000e-96 363.0
18 TraesCS4D01G355700 chr7D 79.805 411 71 8 244 643 149185479 149185888 3.540000e-74 289.0
19 TraesCS4D01G355700 chr2D 78.857 525 86 20 135 643 93269349 93269864 5.800000e-87 331.0
20 TraesCS4D01G355700 chr2D 77.532 316 57 11 338 643 108895088 108895399 7.990000e-41 178.0
21 TraesCS4D01G355700 chr2D 77.301 326 54 12 332 643 39019873 39020192 1.030000e-39 174.0
22 TraesCS4D01G355700 chr6A 78.018 555 101 12 101 643 130364682 130365227 2.080000e-86 329.0
23 TraesCS4D01G355700 chr6A 78.137 526 93 16 131 643 490513182 490512666 5.840000e-82 315.0
24 TraesCS4D01G355700 chr6D 79.861 432 81 5 215 643 470449441 470449013 7.550000e-81 311.0
25 TraesCS4D01G355700 chr6D 100.000 32 0 0 1917 1948 375822505 375822474 3.020000e-05 60.2
26 TraesCS4D01G355700 chr7A 78.652 445 71 16 108 540 570317963 570318395 9.910000e-70 274.0
27 TraesCS4D01G355700 chr3B 74.579 653 117 29 7 643 104226066 104226685 1.000000e-59 241.0
28 TraesCS4D01G355700 chr5D 78.438 320 55 9 335 643 534284927 534284611 2.210000e-46 196.0
29 TraesCS4D01G355700 chr3A 77.882 321 57 9 335 644 270646872 270646555 1.330000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G355700 chr4D 504995489 504998295 2806 False 5184.000000 5184 100.000000 1 2807 1 chr4D.!!$F3 2806
1 TraesCS4D01G355700 chr4D 504344626 504345893 1267 False 1722.000000 1722 91.254000 709 1982 1 chr4D.!!$F2 1273
2 TraesCS4D01G355700 chr4D 505188505 505189769 1264 True 1722.000000 1722 91.311000 712 1982 1 chr4D.!!$R1 1270
3 TraesCS4D01G355700 chr4D 288214709 288215342 633 False 377.000000 377 77.948000 5 643 1 chr4D.!!$F1 638
4 TraesCS4D01G355700 chr5A 689298395 689300644 2249 False 1458.500000 2809 94.189500 318 2549 2 chr5A.!!$F4 2231
5 TraesCS4D01G355700 chr5A 688989268 688990494 1226 False 821.000000 1423 92.551500 709 1982 2 chr5A.!!$F3 1273
6 TraesCS4D01G355700 chr4B 651022026 651022884 858 False 1450.000000 1450 97.206000 1005 1859 1 chr4B.!!$F1 854
7 TraesCS4D01G355700 chr4B 651768153 651770496 2343 True 833.000000 1524 91.268000 712 1982 3 chr4B.!!$R1 1270
8 TraesCS4D01G355700 chr4B 651751791 651753924 2133 False 701.666667 1535 89.468333 1 1982 3 chr4B.!!$F2 1981
9 TraesCS4D01G355700 chr7D 461667930 461668538 608 True 363.000000 363 77.868000 39 643 1 chr7D.!!$R1 604
10 TraesCS4D01G355700 chr2D 93269349 93269864 515 False 331.000000 331 78.857000 135 643 1 chr2D.!!$F2 508
11 TraesCS4D01G355700 chr6A 130364682 130365227 545 False 329.000000 329 78.018000 101 643 1 chr6A.!!$F1 542
12 TraesCS4D01G355700 chr6A 490512666 490513182 516 True 315.000000 315 78.137000 131 643 1 chr6A.!!$R1 512
13 TraesCS4D01G355700 chr3B 104226066 104226685 619 False 241.000000 241 74.579000 7 643 1 chr3B.!!$F1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.598065 ACGCCTGCAAGATTTTCACC 59.402 50.0 0.0 0.0 34.07 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2508 0.38539 CACCCAGAACTTGTTGCACC 59.615 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.250939 CGCCGACAAGCTTTCCACA 61.251 57.895 0.00 0.00 0.00 4.17
36 37 1.577328 CGCCGACAAGCTTTCCACAT 61.577 55.000 0.00 0.00 0.00 3.21
55 56 0.755686 TGGGCAAATTTTTCACGCCT 59.244 45.000 14.18 0.00 42.56 5.52
61 62 3.122297 CAAATTTTTCACGCCTGCAAGA 58.878 40.909 0.00 0.00 34.07 3.02
69 70 0.598065 ACGCCTGCAAGATTTTCACC 59.402 50.000 0.00 0.00 34.07 4.02
78 79 4.669809 ATTTTCACCCGGCCGGCA 62.670 61.111 39.46 21.59 33.26 5.69
144 145 2.239400 GGCAGACAAGCTTTTAACCCT 58.761 47.619 0.00 0.00 34.17 4.34
168 236 0.827507 AGCTTTCCACACGGGCAAAT 60.828 50.000 0.00 0.00 36.21 2.32
295 451 2.603776 GGGTGTCTGGTCCCTCGT 60.604 66.667 0.00 0.00 40.48 4.18
301 457 1.153061 TCTGGTCCCTCGTGTCACT 59.847 57.895 0.65 0.00 0.00 3.41
330 487 4.025401 CACCGGTCCGCAAAGTGC 62.025 66.667 2.59 0.00 40.69 4.40
393 550 4.997905 ACATATCAAAATCGATCGCCTG 57.002 40.909 11.09 4.81 0.00 4.85
459 623 3.054287 TGGAGGTATAATTGGCCGAACAA 60.054 43.478 0.00 0.00 34.41 2.83
475 639 6.534793 GGCCGAACAATGATTTGAACATAAAT 59.465 34.615 0.00 0.00 36.64 1.40
503 901 4.213564 ACTTTGAACACAATTTTGGCCA 57.786 36.364 0.00 0.00 0.00 5.36
519 917 1.543429 GGCCATTAAGATGAGGTCGGG 60.543 57.143 0.00 0.00 35.16 5.14
530 928 4.077184 GGTCGGGTGGCGATGACA 62.077 66.667 0.00 0.00 33.04 3.58
572 971 4.545823 TTCGACGATGCAAAACTTTTCT 57.454 36.364 0.00 0.00 0.00 2.52
573 972 3.872354 TCGACGATGCAAAACTTTTCTG 58.128 40.909 0.00 0.00 0.00 3.02
643 1074 2.616376 TGTCAAAATCGGGTGTCAACAG 59.384 45.455 0.00 0.00 0.00 3.16
662 1093 1.342174 AGAAGGACGTTAAACTGCCGA 59.658 47.619 0.00 0.00 0.00 5.54
663 1094 1.458445 GAAGGACGTTAAACTGCCGAC 59.542 52.381 0.00 0.00 0.00 4.79
664 1095 0.665369 AGGACGTTAAACTGCCGACG 60.665 55.000 0.00 0.00 41.00 5.12
666 1097 1.130955 GACGTTAAACTGCCGACGAA 58.869 50.000 0.00 0.00 38.74 3.85
667 1098 1.723003 GACGTTAAACTGCCGACGAAT 59.277 47.619 0.00 0.00 38.74 3.34
702 1133 2.939103 ACAGAGTTGAAGTTGACAGCAC 59.061 45.455 0.00 0.00 0.00 4.40
745 1176 3.762293 TGCACCTTCACCATGCAC 58.238 55.556 0.00 0.00 44.17 4.57
793 1232 1.152860 TGGCTTTGGTCCGCAAGAA 60.153 52.632 5.03 0.00 43.02 2.52
962 1413 3.383761 CATCGATAGCACATACACAGCA 58.616 45.455 0.00 0.00 0.00 4.41
965 1416 1.524355 GATAGCACATACACAGCAGCG 59.476 52.381 0.00 0.00 0.00 5.18
969 1420 0.717784 CACATACACAGCAGCGACAG 59.282 55.000 0.00 0.00 0.00 3.51
970 1421 0.603065 ACATACACAGCAGCGACAGA 59.397 50.000 0.00 0.00 0.00 3.41
971 1422 1.000843 ACATACACAGCAGCGACAGAA 59.999 47.619 0.00 0.00 0.00 3.02
974 1425 1.378531 ACACAGCAGCGACAGAAAAA 58.621 45.000 0.00 0.00 0.00 1.94
975 1426 1.064060 ACACAGCAGCGACAGAAAAAC 59.936 47.619 0.00 0.00 0.00 2.43
976 1427 0.663153 ACAGCAGCGACAGAAAAACC 59.337 50.000 0.00 0.00 0.00 3.27
977 1428 0.662619 CAGCAGCGACAGAAAAACCA 59.337 50.000 0.00 0.00 0.00 3.67
978 1429 1.065401 CAGCAGCGACAGAAAAACCAA 59.935 47.619 0.00 0.00 0.00 3.67
979 1430 1.334869 AGCAGCGACAGAAAAACCAAG 59.665 47.619 0.00 0.00 0.00 3.61
981 1432 2.854805 GCAGCGACAGAAAAACCAAGAC 60.855 50.000 0.00 0.00 0.00 3.01
982 1433 1.947456 AGCGACAGAAAAACCAAGACC 59.053 47.619 0.00 0.00 0.00 3.85
983 1434 1.947456 GCGACAGAAAAACCAAGACCT 59.053 47.619 0.00 0.00 0.00 3.85
985 1436 2.287009 CGACAGAAAAACCAAGACCTGC 60.287 50.000 0.00 0.00 0.00 4.85
986 1437 2.031870 ACAGAAAAACCAAGACCTGCC 58.968 47.619 0.00 0.00 0.00 4.85
987 1438 2.031120 CAGAAAAACCAAGACCTGCCA 58.969 47.619 0.00 0.00 0.00 4.92
989 1440 3.103742 AGAAAAACCAAGACCTGCCAAA 58.896 40.909 0.00 0.00 0.00 3.28
990 1441 3.711190 AGAAAAACCAAGACCTGCCAAAT 59.289 39.130 0.00 0.00 0.00 2.32
991 1442 4.164030 AGAAAAACCAAGACCTGCCAAATT 59.836 37.500 0.00 0.00 0.00 1.82
992 1443 5.365314 AGAAAAACCAAGACCTGCCAAATTA 59.635 36.000 0.00 0.00 0.00 1.40
994 1445 4.600692 AACCAAGACCTGCCAAATTAAC 57.399 40.909 0.00 0.00 0.00 2.01
995 1446 3.844640 ACCAAGACCTGCCAAATTAACT 58.155 40.909 0.00 0.00 0.00 2.24
996 1447 3.826729 ACCAAGACCTGCCAAATTAACTC 59.173 43.478 0.00 0.00 0.00 3.01
997 1448 3.826157 CCAAGACCTGCCAAATTAACTCA 59.174 43.478 0.00 0.00 0.00 3.41
998 1449 4.280677 CCAAGACCTGCCAAATTAACTCAA 59.719 41.667 0.00 0.00 0.00 3.02
999 1450 5.464168 CAAGACCTGCCAAATTAACTCAAG 58.536 41.667 0.00 0.00 0.00 3.02
1000 1451 4.985538 AGACCTGCCAAATTAACTCAAGA 58.014 39.130 0.00 0.00 0.00 3.02
1002 1453 5.416952 AGACCTGCCAAATTAACTCAAGATG 59.583 40.000 0.00 0.00 0.00 2.90
1003 1454 4.463891 ACCTGCCAAATTAACTCAAGATGG 59.536 41.667 0.00 0.00 0.00 3.51
1472 1923 2.502492 CCGGCGAGGTGGAGATCAT 61.502 63.158 9.30 0.00 34.51 2.45
1569 2020 1.675310 CCTGGCGCTGGTGATCAAA 60.675 57.895 7.64 0.00 0.00 2.69
1637 2088 2.432628 CGAGGACAAGTGGACCGC 60.433 66.667 0.00 0.00 0.00 5.68
1638 2089 2.741092 GAGGACAAGTGGACCGCA 59.259 61.111 7.99 0.00 0.00 5.69
1859 2327 5.212934 GCGGCCAGCTTAATTAATTAACTC 58.787 41.667 15.19 10.60 44.04 3.01
1863 2340 7.426410 GGCCAGCTTAATTAATTAACTCCTTC 58.574 38.462 15.19 5.20 0.00 3.46
1892 2369 4.671766 CGAAAAGAAGAATAAACCAGCCGG 60.672 45.833 0.00 0.00 38.77 6.13
1909 2388 6.183360 ACCAGCCGGACATATATCATACATAC 60.183 42.308 5.05 0.00 35.59 2.39
1913 2392 7.664318 AGCCGGACATATATCATACATACGATA 59.336 37.037 5.05 0.00 0.00 2.92
1914 2393 8.459635 GCCGGACATATATCATACATACGATAT 58.540 37.037 5.05 0.00 38.20 1.63
1924 2432 6.719365 TCATACATACGATATGATGAGAGCG 58.281 40.000 10.64 0.00 34.77 5.03
1974 2482 1.594331 GGAAAGAGCGTGGACAACTT 58.406 50.000 0.00 0.00 0.00 2.66
1994 2502 6.187727 ACTTCTAATTTGAGGTCCAGAACA 57.812 37.500 0.00 0.00 0.00 3.18
2000 2508 2.549064 TGAGGTCCAGAACATGTGTG 57.451 50.000 0.00 0.00 0.00 3.82
2015 2523 1.472082 TGTGTGGTGCAACAAGTTCTG 59.528 47.619 5.70 0.00 39.98 3.02
2020 2528 1.102978 GTGCAACAAGTTCTGGGTGT 58.897 50.000 0.00 0.00 36.32 4.16
2044 2558 6.599356 AACCTTACAACCAACCAATAATCC 57.401 37.500 0.00 0.00 0.00 3.01
2065 2579 6.906157 TCCATACCTACTAATAAAGGACGG 57.094 41.667 0.00 0.00 36.66 4.79
2075 2589 6.523840 ACTAATAAAGGACGGTGTGTTTGTA 58.476 36.000 0.00 0.00 0.00 2.41
2077 2591 5.873179 ATAAAGGACGGTGTGTTTGTATG 57.127 39.130 0.00 0.00 0.00 2.39
2098 2612 5.201713 TGAAATTTTCGTTTACCCATGCA 57.798 34.783 4.76 0.00 0.00 3.96
2106 2620 5.508200 TCGTTTACCCATGCATATTTTCC 57.492 39.130 0.00 0.00 0.00 3.13
2170 2684 0.679640 TTGTTATTGGGGCTCGGCTG 60.680 55.000 0.00 0.00 0.00 4.85
2190 2704 1.933853 GGACGCCACACTGATGTTATC 59.066 52.381 0.00 0.00 36.72 1.75
2203 2717 1.707106 TGTTATCGGGCCTCGGATAA 58.293 50.000 15.70 15.70 40.51 1.75
2237 2751 0.176680 CTGTCCCCTTCATCTGTCGG 59.823 60.000 0.00 0.00 0.00 4.79
2240 2754 0.041238 TCCCCTTCATCTGTCGGTCT 59.959 55.000 0.00 0.00 0.00 3.85
2241 2755 0.905357 CCCCTTCATCTGTCGGTCTT 59.095 55.000 0.00 0.00 0.00 3.01
2258 2772 3.189495 GGTCTTAGAGCAGCAAAAAGGTC 59.811 47.826 6.55 0.00 0.00 3.85
2265 2779 4.343239 AGAGCAGCAAAAAGGTCATTCTTT 59.657 37.500 0.00 0.00 38.48 2.52
2267 2781 3.426525 GCAGCAAAAAGGTCATTCTTTCG 59.573 43.478 0.00 0.00 36.09 3.46
2278 2792 4.406943 GTCATTCTTTCGTGCAAGGATTC 58.593 43.478 0.00 0.00 0.00 2.52
2285 2799 1.798223 TCGTGCAAGGATTCAAACTCG 59.202 47.619 0.00 0.00 0.00 4.18
2353 2868 9.674824 GCTTATCCTTATGATGAAACAAGATTG 57.325 33.333 0.00 0.00 34.76 2.67
2401 2916 2.931969 CGTTGGTTCTTATACGGGGAAC 59.068 50.000 0.00 0.00 38.71 3.62
2436 2951 4.665833 ACTAATAACACTATCGGCTGCA 57.334 40.909 0.50 0.00 0.00 4.41
2448 2963 2.595463 GCTGCAACCACCTGAGCA 60.595 61.111 0.00 0.00 35.43 4.26
2488 3003 9.489084 TGATAGAATAAGGATTTGTTATCCACG 57.511 33.333 6.57 0.00 40.61 4.94
2489 3004 9.706691 GATAGAATAAGGATTTGTTATCCACGA 57.293 33.333 6.57 0.00 40.61 4.35
2491 3006 8.980481 AGAATAAGGATTTGTTATCCACGAAT 57.020 30.769 6.57 0.00 41.64 3.34
2495 3010 7.568199 AAGGATTTGTTATCCACGAATAAGG 57.432 36.000 6.57 0.00 39.34 2.69
2496 3011 6.895782 AGGATTTGTTATCCACGAATAAGGA 58.104 36.000 6.57 0.00 39.34 3.36
2497 3012 7.518188 AGGATTTGTTATCCACGAATAAGGAT 58.482 34.615 6.57 0.00 46.09 3.24
2498 3013 7.998964 AGGATTTGTTATCCACGAATAAGGATT 59.001 33.333 6.57 0.00 41.80 3.01
2499 3014 8.630037 GGATTTGTTATCCACGAATAAGGATTT 58.370 33.333 0.00 0.00 41.80 2.17
2500 3015 9.450807 GATTTGTTATCCACGAATAAGGATTTG 57.549 33.333 0.00 0.00 41.80 2.32
2501 3016 7.931578 TTGTTATCCACGAATAAGGATTTGT 57.068 32.000 0.00 0.00 41.80 2.83
2502 3017 7.931578 TGTTATCCACGAATAAGGATTTGTT 57.068 32.000 0.00 0.00 41.80 2.83
2503 3018 9.451002 TTGTTATCCACGAATAAGGATTTGTTA 57.549 29.630 0.00 0.00 41.80 2.41
2504 3019 9.621629 TGTTATCCACGAATAAGGATTTGTTAT 57.378 29.630 0.00 0.00 41.80 1.89
2506 3021 7.745620 ATCCACGAATAAGGATTTGTTATCC 57.254 36.000 0.00 0.00 41.80 2.59
2507 3022 6.654959 TCCACGAATAAGGATTTGTTATCCA 58.345 36.000 6.57 0.00 37.54 3.41
2508 3023 6.540914 TCCACGAATAAGGATTTGTTATCCAC 59.459 38.462 6.57 0.00 37.54 4.02
2549 3064 5.547465 TGCCTATTCTAATACGGGATGTTG 58.453 41.667 0.00 0.00 0.00 3.33
2550 3065 5.071250 TGCCTATTCTAATACGGGATGTTGT 59.929 40.000 0.00 0.00 0.00 3.32
2551 3066 5.995897 GCCTATTCTAATACGGGATGTTGTT 59.004 40.000 0.00 0.00 0.00 2.83
2552 3067 6.147328 GCCTATTCTAATACGGGATGTTGTTC 59.853 42.308 0.00 0.00 0.00 3.18
2553 3068 6.649557 CCTATTCTAATACGGGATGTTGTTCC 59.350 42.308 0.00 0.00 34.83 3.62
2554 3069 5.687166 TTCTAATACGGGATGTTGTTCCT 57.313 39.130 0.00 0.00 35.97 3.36
2555 3070 5.687166 TCTAATACGGGATGTTGTTCCTT 57.313 39.130 0.00 0.00 35.97 3.36
2556 3071 6.057321 TCTAATACGGGATGTTGTTCCTTT 57.943 37.500 0.00 0.00 35.97 3.11
2557 3072 7.185318 TCTAATACGGGATGTTGTTCCTTTA 57.815 36.000 0.00 0.00 35.97 1.85
2558 3073 7.043565 TCTAATACGGGATGTTGTTCCTTTAC 58.956 38.462 0.00 0.00 35.97 2.01
2559 3074 3.495434 ACGGGATGTTGTTCCTTTACA 57.505 42.857 0.00 0.00 35.97 2.41
2560 3075 4.028993 ACGGGATGTTGTTCCTTTACAT 57.971 40.909 0.00 0.00 35.97 2.29
2561 3076 5.168647 ACGGGATGTTGTTCCTTTACATA 57.831 39.130 0.00 0.00 35.97 2.29
2562 3077 4.939439 ACGGGATGTTGTTCCTTTACATAC 59.061 41.667 0.00 0.00 35.97 2.39
2563 3078 5.183228 CGGGATGTTGTTCCTTTACATACT 58.817 41.667 0.00 0.00 34.29 2.12
2564 3079 5.646360 CGGGATGTTGTTCCTTTACATACTT 59.354 40.000 0.00 0.00 34.29 2.24
2565 3080 6.403200 CGGGATGTTGTTCCTTTACATACTTG 60.403 42.308 0.00 0.00 34.29 3.16
2566 3081 6.433093 GGGATGTTGTTCCTTTACATACTTGT 59.567 38.462 0.00 0.00 34.29 3.16
2567 3082 7.361799 GGGATGTTGTTCCTTTACATACTTGTC 60.362 40.741 0.00 0.00 34.29 3.18
2568 3083 7.174253 GGATGTTGTTCCTTTACATACTTGTCA 59.826 37.037 0.00 0.00 33.66 3.58
2569 3084 7.254227 TGTTGTTCCTTTACATACTTGTCAC 57.746 36.000 0.00 0.00 37.28 3.67
2570 3085 6.824196 TGTTGTTCCTTTACATACTTGTCACA 59.176 34.615 0.00 0.00 37.28 3.58
2571 3086 7.337184 TGTTGTTCCTTTACATACTTGTCACAA 59.663 33.333 0.00 0.00 37.28 3.33
2572 3087 7.254227 TGTTCCTTTACATACTTGTCACAAC 57.746 36.000 0.00 0.00 37.28 3.32
2573 3088 7.051623 TGTTCCTTTACATACTTGTCACAACT 58.948 34.615 0.00 0.00 37.28 3.16
2574 3089 7.554835 TGTTCCTTTACATACTTGTCACAACTT 59.445 33.333 0.00 0.00 37.28 2.66
2575 3090 8.403236 GTTCCTTTACATACTTGTCACAACTTT 58.597 33.333 0.00 0.00 37.28 2.66
2576 3091 8.514330 TCCTTTACATACTTGTCACAACTTTT 57.486 30.769 0.00 0.00 37.28 2.27
2577 3092 8.962679 TCCTTTACATACTTGTCACAACTTTTT 58.037 29.630 0.00 0.00 37.28 1.94
2601 3116 9.528018 TTTTTAAAGAAAAACTAGGTGATGCTG 57.472 29.630 0.00 0.00 39.16 4.41
2602 3117 7.817418 TTAAAGAAAAACTAGGTGATGCTGT 57.183 32.000 0.00 0.00 0.00 4.40
2603 3118 8.911918 TTAAAGAAAAACTAGGTGATGCTGTA 57.088 30.769 0.00 0.00 0.00 2.74
2604 3119 9.515226 TTAAAGAAAAACTAGGTGATGCTGTAT 57.485 29.630 0.00 0.00 0.00 2.29
2605 3120 8.409358 AAAGAAAAACTAGGTGATGCTGTATT 57.591 30.769 0.00 0.00 0.00 1.89
2606 3121 8.409358 AAGAAAAACTAGGTGATGCTGTATTT 57.591 30.769 0.00 0.00 0.00 1.40
2607 3122 8.409358 AGAAAAACTAGGTGATGCTGTATTTT 57.591 30.769 0.00 0.00 0.00 1.82
2608 3123 9.515226 AGAAAAACTAGGTGATGCTGTATTTTA 57.485 29.630 0.00 0.00 0.00 1.52
2609 3124 9.774742 GAAAAACTAGGTGATGCTGTATTTTAG 57.225 33.333 0.00 0.00 0.00 1.85
2610 3125 6.927294 AACTAGGTGATGCTGTATTTTAGC 57.073 37.500 0.00 0.00 41.49 3.09
2611 3126 6.240549 ACTAGGTGATGCTGTATTTTAGCT 57.759 37.500 0.00 0.00 41.66 3.32
2612 3127 6.284459 ACTAGGTGATGCTGTATTTTAGCTC 58.716 40.000 0.00 0.00 41.66 4.09
2613 3128 5.102953 AGGTGATGCTGTATTTTAGCTCA 57.897 39.130 0.00 0.00 41.66 4.26
2614 3129 5.688807 AGGTGATGCTGTATTTTAGCTCAT 58.311 37.500 0.00 0.00 41.66 2.90
2615 3130 6.125029 AGGTGATGCTGTATTTTAGCTCATT 58.875 36.000 0.00 0.00 41.66 2.57
2616 3131 6.039047 AGGTGATGCTGTATTTTAGCTCATTG 59.961 38.462 0.00 0.00 41.66 2.82
2617 3132 5.684626 GTGATGCTGTATTTTAGCTCATTGC 59.315 40.000 0.00 0.00 41.66 3.56
2618 3133 4.637483 TGCTGTATTTTAGCTCATTGCC 57.363 40.909 0.00 0.00 44.23 4.52
2619 3134 3.381272 TGCTGTATTTTAGCTCATTGCCC 59.619 43.478 0.00 0.00 44.23 5.36
2620 3135 3.548818 GCTGTATTTTAGCTCATTGCCCG 60.549 47.826 0.00 0.00 44.23 6.13
2621 3136 2.357637 TGTATTTTAGCTCATTGCCCGC 59.642 45.455 0.00 0.00 44.23 6.13
2622 3137 0.746659 ATTTTAGCTCATTGCCCGCC 59.253 50.000 0.00 0.00 44.23 6.13
2623 3138 0.323360 TTTTAGCTCATTGCCCGCCT 60.323 50.000 0.00 0.00 44.23 5.52
2624 3139 0.323360 TTTAGCTCATTGCCCGCCTT 60.323 50.000 0.00 0.00 44.23 4.35
2625 3140 0.748005 TTAGCTCATTGCCCGCCTTC 60.748 55.000 0.00 0.00 44.23 3.46
2626 3141 1.909459 TAGCTCATTGCCCGCCTTCA 61.909 55.000 0.00 0.00 44.23 3.02
2627 3142 3.056313 GCTCATTGCCCGCCTTCAC 62.056 63.158 0.00 0.00 35.15 3.18
2628 3143 2.361104 TCATTGCCCGCCTTCACC 60.361 61.111 0.00 0.00 0.00 4.02
2629 3144 2.676121 CATTGCCCGCCTTCACCA 60.676 61.111 0.00 0.00 0.00 4.17
2630 3145 2.117206 ATTGCCCGCCTTCACCAA 59.883 55.556 0.00 0.00 0.00 3.67
2631 3146 2.275380 ATTGCCCGCCTTCACCAAC 61.275 57.895 0.00 0.00 0.00 3.77
2632 3147 2.713531 ATTGCCCGCCTTCACCAACT 62.714 55.000 0.00 0.00 0.00 3.16
2633 3148 2.058125 TTGCCCGCCTTCACCAACTA 62.058 55.000 0.00 0.00 0.00 2.24
2634 3149 1.745489 GCCCGCCTTCACCAACTAG 60.745 63.158 0.00 0.00 0.00 2.57
2635 3150 1.078426 CCCGCCTTCACCAACTAGG 60.078 63.158 0.00 0.00 45.67 3.02
2636 3151 1.078426 CCGCCTTCACCAACTAGGG 60.078 63.158 0.00 0.00 43.89 3.53
2637 3152 1.677552 CGCCTTCACCAACTAGGGT 59.322 57.895 0.00 0.00 43.89 4.34
2638 3153 0.899720 CGCCTTCACCAACTAGGGTA 59.100 55.000 0.00 0.00 43.89 3.69
2642 3157 2.505819 CCTTCACCAACTAGGGTAGCAT 59.494 50.000 0.00 0.00 43.89 3.79
2647 3162 4.344102 TCACCAACTAGGGTAGCATACATC 59.656 45.833 0.00 0.00 45.43 3.06
2651 3166 5.934625 CCAACTAGGGTAGCATACATCAATC 59.065 44.000 0.00 0.00 45.43 2.67
2652 3167 6.239714 CCAACTAGGGTAGCATACATCAATCT 60.240 42.308 0.00 0.00 45.43 2.40
2654 3169 8.367911 CAACTAGGGTAGCATACATCAATCTTA 58.632 37.037 0.00 0.00 45.43 2.10
2655 3170 7.897864 ACTAGGGTAGCATACATCAATCTTAC 58.102 38.462 0.00 0.00 45.43 2.34
2656 3171 6.747414 AGGGTAGCATACATCAATCTTACA 57.253 37.500 0.00 0.00 45.43 2.41
2657 3172 7.136822 AGGGTAGCATACATCAATCTTACAA 57.863 36.000 0.00 0.00 45.43 2.41
2682 3197 2.934107 TTTTCATGTTCGTTCGTCCG 57.066 45.000 0.00 0.00 0.00 4.79
2683 3198 1.855513 TTTCATGTTCGTTCGTCCGT 58.144 45.000 0.00 0.00 0.00 4.69
2684 3199 1.855513 TTCATGTTCGTTCGTCCGTT 58.144 45.000 0.00 0.00 0.00 4.44
2686 3201 3.010624 TCATGTTCGTTCGTCCGTTAA 57.989 42.857 0.00 0.00 0.00 2.01
2687 3202 3.379240 TCATGTTCGTTCGTCCGTTAAA 58.621 40.909 0.00 0.00 0.00 1.52
2688 3203 3.989167 TCATGTTCGTTCGTCCGTTAAAT 59.011 39.130 0.00 0.00 0.00 1.40
2689 3204 5.159925 TCATGTTCGTTCGTCCGTTAAATA 58.840 37.500 0.00 0.00 0.00 1.40
2690 3205 5.286797 TCATGTTCGTTCGTCCGTTAAATAG 59.713 40.000 0.00 0.00 0.00 1.73
2691 3206 4.545610 TGTTCGTTCGTCCGTTAAATAGT 58.454 39.130 0.00 0.00 0.00 2.12
2693 3208 3.758300 TCGTTCGTCCGTTAAATAGTCC 58.242 45.455 0.00 0.00 0.00 3.85
2694 3209 2.854185 CGTTCGTCCGTTAAATAGTCCC 59.146 50.000 0.00 0.00 0.00 4.46
2695 3210 3.673052 CGTTCGTCCGTTAAATAGTCCCA 60.673 47.826 0.00 0.00 0.00 4.37
2696 3211 3.508744 TCGTCCGTTAAATAGTCCCAC 57.491 47.619 0.00 0.00 0.00 4.61
2697 3212 2.166254 TCGTCCGTTAAATAGTCCCACC 59.834 50.000 0.00 0.00 0.00 4.61
2698 3213 2.167075 CGTCCGTTAAATAGTCCCACCT 59.833 50.000 0.00 0.00 0.00 4.00
2701 3216 4.035112 TCCGTTAAATAGTCCCACCTCAT 58.965 43.478 0.00 0.00 0.00 2.90
2725 4113 6.371595 TTTTTATCCAGCATTCCACCATTT 57.628 33.333 0.00 0.00 0.00 2.32
2726 4114 6.371595 TTTTATCCAGCATTCCACCATTTT 57.628 33.333 0.00 0.00 0.00 1.82
2727 4115 7.487822 TTTTATCCAGCATTCCACCATTTTA 57.512 32.000 0.00 0.00 0.00 1.52
2728 4116 7.673641 TTTATCCAGCATTCCACCATTTTAT 57.326 32.000 0.00 0.00 0.00 1.40
2729 4117 8.774546 TTTATCCAGCATTCCACCATTTTATA 57.225 30.769 0.00 0.00 0.00 0.98
2730 4118 8.954834 TTATCCAGCATTCCACCATTTTATAT 57.045 30.769 0.00 0.00 0.00 0.86
2733 4121 8.352137 TCCAGCATTCCACCATTTTATATATG 57.648 34.615 0.00 0.00 0.00 1.78
2734 4122 7.949565 TCCAGCATTCCACCATTTTATATATGT 59.050 33.333 0.00 0.00 0.00 2.29
2735 4123 8.246180 CCAGCATTCCACCATTTTATATATGTC 58.754 37.037 0.00 0.00 0.00 3.06
2736 4124 8.246180 CAGCATTCCACCATTTTATATATGTCC 58.754 37.037 0.00 0.00 0.00 4.02
2737 4125 7.397192 AGCATTCCACCATTTTATATATGTCCC 59.603 37.037 0.00 0.00 0.00 4.46
2738 4126 7.363793 GCATTCCACCATTTTATATATGTCCCC 60.364 40.741 0.00 0.00 0.00 4.81
2739 4127 6.788509 TCCACCATTTTATATATGTCCCCA 57.211 37.500 0.00 0.00 0.00 4.96
2740 4128 7.168022 TCCACCATTTTATATATGTCCCCAA 57.832 36.000 0.00 0.00 0.00 4.12
2741 4129 7.237982 TCCACCATTTTATATATGTCCCCAAG 58.762 38.462 0.00 0.00 0.00 3.61
2742 4130 7.010160 CCACCATTTTATATATGTCCCCAAGT 58.990 38.462 0.00 0.00 0.00 3.16
2743 4131 7.508977 CCACCATTTTATATATGTCCCCAAGTT 59.491 37.037 0.00 0.00 0.00 2.66
2744 4132 9.581289 CACCATTTTATATATGTCCCCAAGTTA 57.419 33.333 0.00 0.00 0.00 2.24
2751 4139 7.996758 ATATATGTCCCCAAGTTATCTAGGG 57.003 40.000 0.00 0.00 41.12 3.53
2752 4140 3.502051 TGTCCCCAAGTTATCTAGGGT 57.498 47.619 8.14 0.00 39.76 4.34
2753 4141 3.381335 TGTCCCCAAGTTATCTAGGGTC 58.619 50.000 8.14 4.71 39.76 4.46
2754 4142 3.013648 TGTCCCCAAGTTATCTAGGGTCT 59.986 47.826 8.14 0.00 39.76 3.85
2755 4143 3.642377 GTCCCCAAGTTATCTAGGGTCTC 59.358 52.174 8.14 0.41 39.76 3.36
2756 4144 3.273886 TCCCCAAGTTATCTAGGGTCTCA 59.726 47.826 8.14 0.00 39.76 3.27
2757 4145 4.037927 CCCCAAGTTATCTAGGGTCTCAA 58.962 47.826 0.00 0.00 39.76 3.02
2758 4146 4.141688 CCCCAAGTTATCTAGGGTCTCAAC 60.142 50.000 0.00 0.00 39.76 3.18
2759 4147 4.469945 CCCAAGTTATCTAGGGTCTCAACA 59.530 45.833 0.00 0.00 36.52 3.33
2760 4148 5.045869 CCCAAGTTATCTAGGGTCTCAACAA 60.046 44.000 0.00 0.00 36.52 2.83
2761 4149 6.109359 CCAAGTTATCTAGGGTCTCAACAAG 58.891 44.000 0.00 0.00 0.00 3.16
2762 4150 5.346181 AGTTATCTAGGGTCTCAACAAGC 57.654 43.478 0.00 0.00 0.00 4.01
2763 4151 4.162509 AGTTATCTAGGGTCTCAACAAGCC 59.837 45.833 0.00 0.00 34.42 4.35
2764 4152 0.895530 TCTAGGGTCTCAACAAGCCG 59.104 55.000 0.00 0.00 39.31 5.52
2765 4153 0.608640 CTAGGGTCTCAACAAGCCGT 59.391 55.000 0.00 0.00 39.31 5.68
2766 4154 0.606604 TAGGGTCTCAACAAGCCGTC 59.393 55.000 0.00 0.00 39.31 4.79
2767 4155 1.122019 AGGGTCTCAACAAGCCGTCT 61.122 55.000 0.00 0.00 39.31 4.18
2768 4156 0.250338 GGGTCTCAACAAGCCGTCTT 60.250 55.000 0.00 0.00 0.00 3.01
2782 4170 5.662674 AGCCGTCTTGAGAACTAATAAGT 57.337 39.130 0.00 0.00 37.65 2.24
2783 4171 6.770746 AGCCGTCTTGAGAACTAATAAGTA 57.229 37.500 0.00 0.00 33.75 2.24
2784 4172 6.797454 AGCCGTCTTGAGAACTAATAAGTAG 58.203 40.000 0.00 0.00 33.75 2.57
2785 4173 6.602406 AGCCGTCTTGAGAACTAATAAGTAGA 59.398 38.462 0.00 0.00 33.75 2.59
2786 4174 6.913673 GCCGTCTTGAGAACTAATAAGTAGAG 59.086 42.308 0.00 0.00 33.75 2.43
2787 4175 7.419204 CCGTCTTGAGAACTAATAAGTAGAGG 58.581 42.308 0.00 0.00 33.75 3.69
2788 4176 7.419204 CGTCTTGAGAACTAATAAGTAGAGGG 58.581 42.308 0.00 0.00 33.75 4.30
2798 4186 1.207791 AAGTAGAGGGTGAGGCCATG 58.792 55.000 5.01 0.00 39.65 3.66
2799 4187 0.339859 AGTAGAGGGTGAGGCCATGA 59.660 55.000 5.01 0.00 39.65 3.07
2801 4189 1.346068 GTAGAGGGTGAGGCCATGATC 59.654 57.143 5.01 0.00 39.65 2.92
2802 4190 0.030297 AGAGGGTGAGGCCATGATCT 60.030 55.000 5.01 0.00 39.65 2.75
2804 4192 2.050144 GAGGGTGAGGCCATGATCTAA 58.950 52.381 5.01 0.00 39.65 2.10
2805 4193 2.641815 GAGGGTGAGGCCATGATCTAAT 59.358 50.000 5.01 0.00 39.65 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.249953 TGGAAAGCTTGTCGGCGTTA 60.250 50.000 6.85 0.00 34.42 3.18
35 36 1.347378 AGGCGTGAAAAATTTGCCCAT 59.653 42.857 11.71 0.00 46.92 4.00
36 37 0.755686 AGGCGTGAAAAATTTGCCCA 59.244 45.000 11.71 0.00 46.92 5.36
55 56 1.531739 GGCCGGGTGAAAATCTTGCA 61.532 55.000 2.18 0.00 0.00 4.08
61 62 4.669809 TGCCGGCCGGGTGAAAAT 62.670 61.111 43.31 0.00 38.44 1.82
69 70 4.722855 CAAAAGCTTGCCGGCCGG 62.723 66.667 40.26 40.26 38.57 6.13
78 79 1.535226 GGTTTTCCGACGCAAAAGCTT 60.535 47.619 16.72 0.00 37.94 3.74
96 97 2.361610 CTTGCCGGCATGGAAGGT 60.362 61.111 33.25 0.00 42.00 3.50
104 105 1.391157 AAGTGAAAAGCTTGCCGGCA 61.391 50.000 29.03 29.03 34.17 5.69
139 140 1.064017 TGTGGAAAGCTTGTCAGGGTT 60.064 47.619 0.00 0.00 0.00 4.11
144 145 0.817634 CCCGTGTGGAAAGCTTGTCA 60.818 55.000 0.00 0.00 37.49 3.58
168 236 3.467374 AAAGCTTTCCGGCATGAAAAA 57.533 38.095 5.69 0.00 34.06 1.94
181 249 0.534203 TCGGCCGAGTGAAAAGCTTT 60.534 50.000 27.28 5.69 0.00 3.51
295 451 2.682856 GGTGCTGAGTGAAAAAGTGACA 59.317 45.455 0.00 0.00 0.00 3.58
301 457 1.305201 GACCGGTGCTGAGTGAAAAA 58.695 50.000 14.63 0.00 0.00 1.94
330 487 3.932710 TCGTATGCAAAAGTTAGAGGCAG 59.067 43.478 0.00 0.00 37.96 4.85
393 550 1.129998 TCGATTGTCTTCGTCTCGTCC 59.870 52.381 0.00 0.00 40.03 4.79
475 639 8.821894 GCCAAAATTGTGTTCAAAGTTGTAATA 58.178 29.630 0.00 0.00 37.11 0.98
503 901 1.141053 GCCACCCGACCTCATCTTAAT 59.859 52.381 0.00 0.00 0.00 1.40
519 917 1.535028 TGATGTTTGTGTCATCGCCAC 59.465 47.619 0.00 0.00 42.96 5.01
643 1074 1.458445 GTCGGCAGTTTAACGTCCTTC 59.542 52.381 0.00 0.00 0.00 3.46
662 1093 5.237815 TCTGTTATCTTCAAGCACATTCGT 58.762 37.500 0.00 0.00 0.00 3.85
663 1094 5.349817 ACTCTGTTATCTTCAAGCACATTCG 59.650 40.000 0.00 0.00 0.00 3.34
664 1095 6.734104 ACTCTGTTATCTTCAAGCACATTC 57.266 37.500 0.00 0.00 0.00 2.67
666 1097 6.233434 TCAACTCTGTTATCTTCAAGCACAT 58.767 36.000 0.00 0.00 0.00 3.21
667 1098 5.610398 TCAACTCTGTTATCTTCAAGCACA 58.390 37.500 0.00 0.00 0.00 4.57
702 1133 8.511604 AGTTATCAAAAGGACATCAAGTATGG 57.488 34.615 0.00 0.00 40.16 2.74
745 1176 7.424803 TGTTTAGAATGTCTGAACCATTTGTG 58.575 34.615 9.59 0.00 40.85 3.33
793 1232 1.037579 TCATCGTCGGAGGTGCATCT 61.038 55.000 0.00 0.00 0.00 2.90
936 1381 2.037121 TGTATGTGCTATCGATGGGTGG 59.963 50.000 8.54 0.00 0.00 4.61
944 1390 1.524355 GCTGCTGTGTATGTGCTATCG 59.476 52.381 0.00 0.00 0.00 2.92
962 1413 1.947456 GGTCTTGGTTTTTCTGTCGCT 59.053 47.619 0.00 0.00 0.00 4.93
965 1416 2.034685 GGCAGGTCTTGGTTTTTCTGTC 59.965 50.000 0.00 0.00 0.00 3.51
969 1420 3.535280 TTTGGCAGGTCTTGGTTTTTC 57.465 42.857 0.00 0.00 0.00 2.29
970 1421 4.502105 AATTTGGCAGGTCTTGGTTTTT 57.498 36.364 0.00 0.00 0.00 1.94
971 1422 5.130311 AGTTAATTTGGCAGGTCTTGGTTTT 59.870 36.000 0.00 0.00 0.00 2.43
974 1425 3.826729 GAGTTAATTTGGCAGGTCTTGGT 59.173 43.478 0.00 0.00 0.00 3.67
975 1426 3.826157 TGAGTTAATTTGGCAGGTCTTGG 59.174 43.478 0.00 0.00 0.00 3.61
976 1427 5.241506 TCTTGAGTTAATTTGGCAGGTCTTG 59.758 40.000 0.00 0.00 0.00 3.02
977 1428 5.385198 TCTTGAGTTAATTTGGCAGGTCTT 58.615 37.500 0.00 0.00 0.00 3.01
978 1429 4.985538 TCTTGAGTTAATTTGGCAGGTCT 58.014 39.130 0.00 0.00 0.00 3.85
979 1430 5.393461 CCATCTTGAGTTAATTTGGCAGGTC 60.393 44.000 0.00 0.00 0.00 3.85
981 1432 4.678840 GCCATCTTGAGTTAATTTGGCAGG 60.679 45.833 13.13 0.00 41.92 4.85
982 1433 4.159135 AGCCATCTTGAGTTAATTTGGCAG 59.841 41.667 17.74 0.00 43.45 4.85
983 1434 4.088634 AGCCATCTTGAGTTAATTTGGCA 58.911 39.130 17.74 0.00 43.45 4.92
985 1436 5.420104 AGGAAGCCATCTTGAGTTAATTTGG 59.580 40.000 0.00 0.00 31.48 3.28
986 1437 6.521151 AGGAAGCCATCTTGAGTTAATTTG 57.479 37.500 0.00 0.00 31.48 2.32
987 1438 5.355350 CGAGGAAGCCATCTTGAGTTAATTT 59.645 40.000 0.00 0.00 31.48 1.82
989 1440 4.080863 ACGAGGAAGCCATCTTGAGTTAAT 60.081 41.667 0.00 0.00 31.48 1.40
990 1441 3.260884 ACGAGGAAGCCATCTTGAGTTAA 59.739 43.478 0.00 0.00 31.48 2.01
991 1442 2.832129 ACGAGGAAGCCATCTTGAGTTA 59.168 45.455 0.00 0.00 31.48 2.24
992 1443 1.625818 ACGAGGAAGCCATCTTGAGTT 59.374 47.619 0.00 0.00 31.48 3.01
994 1445 1.800655 CGACGAGGAAGCCATCTTGAG 60.801 57.143 0.00 0.00 31.48 3.02
995 1446 0.173481 CGACGAGGAAGCCATCTTGA 59.827 55.000 0.00 0.00 31.48 3.02
996 1447 0.807667 CCGACGAGGAAGCCATCTTG 60.808 60.000 0.00 0.00 45.00 3.02
997 1448 1.258445 ACCGACGAGGAAGCCATCTT 61.258 55.000 8.56 0.00 45.00 2.40
998 1449 1.682684 ACCGACGAGGAAGCCATCT 60.683 57.895 8.56 0.00 45.00 2.90
999 1450 1.519455 CACCGACGAGGAAGCCATC 60.519 63.158 8.56 0.00 45.00 3.51
1000 1451 2.579201 CACCGACGAGGAAGCCAT 59.421 61.111 8.56 0.00 45.00 4.40
1002 1453 4.070552 AGCACCGACGAGGAAGCC 62.071 66.667 8.56 0.00 45.00 4.35
1003 1454 2.811317 CAGCACCGACGAGGAAGC 60.811 66.667 8.56 10.87 45.00 3.86
1061 1512 3.140814 GAACCTTGGGGATGCCGC 61.141 66.667 0.00 0.00 36.97 6.53
1168 1619 3.961414 GTTGTCCTTGGGCCCGGA 61.961 66.667 19.37 16.48 0.00 5.14
1472 1923 4.595538 ACTTGACGCGCCGGAACA 62.596 61.111 5.05 0.00 0.00 3.18
1569 2020 2.584608 CCGTCGCCTTGGAGGAAT 59.415 61.111 0.00 0.00 37.67 3.01
1613 2064 1.376037 CACTTGTCCTCGCCCTTCC 60.376 63.158 0.00 0.00 0.00 3.46
1637 2088 1.372997 CCCCACGACTCGTTGAGTG 60.373 63.158 3.85 0.21 43.53 3.51
1638 2089 1.524863 CTCCCCACGACTCGTTGAGT 61.525 60.000 0.00 0.00 46.42 3.41
1859 2327 3.045601 TCTTCTTTTCGAGCCAGAAGG 57.954 47.619 21.19 9.86 42.61 3.46
1863 2340 5.181245 TGGTTTATTCTTCTTTTCGAGCCAG 59.819 40.000 0.00 0.00 0.00 4.85
1909 2388 3.550950 ACTCACGCTCTCATCATATCG 57.449 47.619 0.00 0.00 0.00 2.92
1913 2392 7.695480 ATAAGTATACTCACGCTCTCATCAT 57.305 36.000 5.70 0.00 0.00 2.45
1914 2393 7.228706 TGAATAAGTATACTCACGCTCTCATCA 59.771 37.037 5.70 0.00 0.00 3.07
1951 2459 0.895530 TGTCCACGCTCTTTCCCTAG 59.104 55.000 0.00 0.00 0.00 3.02
1974 2482 5.939883 CACATGTTCTGGACCTCAAATTAGA 59.060 40.000 0.00 0.00 0.00 2.10
1994 2502 2.099592 CAGAACTTGTTGCACCACACAT 59.900 45.455 0.00 0.00 0.00 3.21
2000 2508 0.385390 CACCCAGAACTTGTTGCACC 59.615 55.000 0.00 0.00 0.00 5.01
2015 2523 2.886523 GGTTGGTTGTAAGGTTACACCC 59.113 50.000 9.02 9.02 43.95 4.61
2020 2528 7.239438 TGGATTATTGGTTGGTTGTAAGGTTA 58.761 34.615 0.00 0.00 0.00 2.85
2027 2535 5.837829 AGGTATGGATTATTGGTTGGTTGT 58.162 37.500 0.00 0.00 0.00 3.32
2044 2558 6.921857 CACACCGTCCTTTATTAGTAGGTATG 59.078 42.308 0.00 0.00 33.15 2.39
2065 2579 9.823979 GTAAACGAAAATTTCATACAAACACAC 57.176 29.630 6.53 0.00 0.00 3.82
2075 2589 5.788450 TGCATGGGTAAACGAAAATTTCAT 58.212 33.333 6.53 0.00 0.00 2.57
2077 2591 8.419076 AATATGCATGGGTAAACGAAAATTTC 57.581 30.769 10.16 0.00 0.00 2.17
2098 2612 9.866655 AATGTATGTATGTGTGGAGGAAAATAT 57.133 29.630 0.00 0.00 0.00 1.28
2137 2651 6.205853 CCCCAATAACAACAGCGCTATTATTA 59.794 38.462 10.99 5.34 0.00 0.98
2138 2652 5.009610 CCCCAATAACAACAGCGCTATTATT 59.990 40.000 10.99 14.77 0.00 1.40
2139 2653 4.518970 CCCCAATAACAACAGCGCTATTAT 59.481 41.667 10.99 9.45 0.00 1.28
2140 2654 3.880490 CCCCAATAACAACAGCGCTATTA 59.120 43.478 10.99 7.34 0.00 0.98
2141 2655 2.687935 CCCCAATAACAACAGCGCTATT 59.312 45.455 10.99 0.18 0.00 1.73
2170 2684 1.933853 GATAACATCAGTGTGGCGTCC 59.066 52.381 0.00 0.00 38.92 4.79
2183 2697 1.933021 TATCCGAGGCCCGATAACAT 58.067 50.000 14.30 2.56 41.76 2.71
2207 2721 3.244770 TGAAGGGGACAGCGAATAAACTT 60.245 43.478 0.00 0.00 0.00 2.66
2208 2722 2.304761 TGAAGGGGACAGCGAATAAACT 59.695 45.455 0.00 0.00 0.00 2.66
2217 2731 0.460987 CGACAGATGAAGGGGACAGC 60.461 60.000 0.00 0.00 0.00 4.40
2218 2732 0.176680 CCGACAGATGAAGGGGACAG 59.823 60.000 0.00 0.00 0.00 3.51
2219 2733 0.544357 ACCGACAGATGAAGGGGACA 60.544 55.000 0.00 0.00 0.00 4.02
2220 2734 0.175989 GACCGACAGATGAAGGGGAC 59.824 60.000 0.00 0.00 0.00 4.46
2221 2735 0.041238 AGACCGACAGATGAAGGGGA 59.959 55.000 0.00 0.00 0.00 4.81
2222 2736 0.905357 AAGACCGACAGATGAAGGGG 59.095 55.000 0.00 0.00 0.00 4.79
2237 2751 3.815401 TGACCTTTTTGCTGCTCTAAGAC 59.185 43.478 0.00 1.26 0.00 3.01
2240 2754 5.072741 AGAATGACCTTTTTGCTGCTCTAA 58.927 37.500 0.00 0.00 0.00 2.10
2241 2755 4.655963 AGAATGACCTTTTTGCTGCTCTA 58.344 39.130 0.00 0.00 0.00 2.43
2258 2772 4.424061 TGAATCCTTGCACGAAAGAATG 57.576 40.909 0.00 0.00 0.00 2.67
2265 2779 1.798223 CGAGTTTGAATCCTTGCACGA 59.202 47.619 0.00 0.00 0.00 4.35
2267 2781 1.725931 CGCGAGTTTGAATCCTTGCAC 60.726 52.381 0.00 0.00 37.87 4.57
2278 2792 2.061773 ACTGATGAGTTCGCGAGTTTG 58.938 47.619 9.59 0.00 0.00 2.93
2285 2799 1.269166 CGGTACACTGATGAGTTCGC 58.731 55.000 0.00 0.00 0.00 4.70
2321 2835 7.716998 TGTTTCATCATAAGGATAAGCTTCCTC 59.283 37.037 7.44 4.09 45.63 3.71
2353 2868 6.819649 GGTTGGCCTATTTTAATTGGGTAAAC 59.180 38.462 3.32 0.00 32.82 2.01
2354 2869 6.731448 AGGTTGGCCTATTTTAATTGGGTAAA 59.269 34.615 3.32 0.00 44.90 2.01
2436 2951 1.212935 ACAGACTTTGCTCAGGTGGTT 59.787 47.619 0.00 0.00 0.00 3.67
2448 2963 9.877178 CCTTATTCTATCACAACTACAGACTTT 57.123 33.333 0.00 0.00 0.00 2.66
2502 3017 9.127277 GCAAGGTGGTAATATTTTAAGTGGATA 57.873 33.333 0.00 0.00 0.00 2.59
2503 3018 7.069455 GGCAAGGTGGTAATATTTTAAGTGGAT 59.931 37.037 0.00 0.00 0.00 3.41
2504 3019 6.378848 GGCAAGGTGGTAATATTTTAAGTGGA 59.621 38.462 0.00 0.00 0.00 4.02
2505 3020 6.379988 AGGCAAGGTGGTAATATTTTAAGTGG 59.620 38.462 0.00 0.00 0.00 4.00
2506 3021 7.404671 AGGCAAGGTGGTAATATTTTAAGTG 57.595 36.000 0.00 0.00 0.00 3.16
2507 3022 9.709387 AATAGGCAAGGTGGTAATATTTTAAGT 57.291 29.630 0.00 0.00 0.00 2.24
2520 3035 4.315803 CCGTATTAGAATAGGCAAGGTGG 58.684 47.826 0.00 0.00 0.00 4.61
2549 3064 7.492352 AGTTGTGACAAGTATGTAAAGGAAC 57.508 36.000 3.39 0.00 40.74 3.62
2550 3065 8.514330 AAAGTTGTGACAAGTATGTAAAGGAA 57.486 30.769 6.03 0.00 40.74 3.36
2551 3066 8.514330 AAAAGTTGTGACAAGTATGTAAAGGA 57.486 30.769 6.03 0.00 40.74 3.36
2575 3090 9.528018 CAGCATCACCTAGTTTTTCTTTAAAAA 57.472 29.630 0.00 0.00 41.21 1.94
2576 3091 8.691797 ACAGCATCACCTAGTTTTTCTTTAAAA 58.308 29.630 0.00 0.00 33.41 1.52
2577 3092 8.232913 ACAGCATCACCTAGTTTTTCTTTAAA 57.767 30.769 0.00 0.00 0.00 1.52
2578 3093 7.817418 ACAGCATCACCTAGTTTTTCTTTAA 57.183 32.000 0.00 0.00 0.00 1.52
2579 3094 9.515226 AATACAGCATCACCTAGTTTTTCTTTA 57.485 29.630 0.00 0.00 0.00 1.85
2580 3095 8.409358 AATACAGCATCACCTAGTTTTTCTTT 57.591 30.769 0.00 0.00 0.00 2.52
2581 3096 8.409358 AAATACAGCATCACCTAGTTTTTCTT 57.591 30.769 0.00 0.00 0.00 2.52
2582 3097 8.409358 AAAATACAGCATCACCTAGTTTTTCT 57.591 30.769 0.00 0.00 0.00 2.52
2583 3098 9.774742 CTAAAATACAGCATCACCTAGTTTTTC 57.225 33.333 0.00 0.00 0.00 2.29
2584 3099 8.244113 GCTAAAATACAGCATCACCTAGTTTTT 58.756 33.333 0.00 0.00 38.93 1.94
2585 3100 7.611855 AGCTAAAATACAGCATCACCTAGTTTT 59.388 33.333 0.00 0.00 41.66 2.43
2586 3101 7.112779 AGCTAAAATACAGCATCACCTAGTTT 58.887 34.615 0.00 0.00 41.66 2.66
2587 3102 6.653989 AGCTAAAATACAGCATCACCTAGTT 58.346 36.000 0.00 0.00 41.66 2.24
2588 3103 6.127054 TGAGCTAAAATACAGCATCACCTAGT 60.127 38.462 0.00 0.00 41.66 2.57
2589 3104 6.283694 TGAGCTAAAATACAGCATCACCTAG 58.716 40.000 0.00 0.00 41.66 3.02
2590 3105 6.233905 TGAGCTAAAATACAGCATCACCTA 57.766 37.500 0.00 0.00 41.66 3.08
2591 3106 5.102953 TGAGCTAAAATACAGCATCACCT 57.897 39.130 0.00 0.00 41.66 4.00
2592 3107 6.204359 CAATGAGCTAAAATACAGCATCACC 58.796 40.000 0.00 0.00 41.66 4.02
2593 3108 5.684626 GCAATGAGCTAAAATACAGCATCAC 59.315 40.000 0.00 0.00 41.66 3.06
2594 3109 5.221106 GGCAATGAGCTAAAATACAGCATCA 60.221 40.000 0.00 0.00 44.79 3.07
2595 3110 5.218139 GGCAATGAGCTAAAATACAGCATC 58.782 41.667 0.00 0.00 44.79 3.91
2596 3111 4.038402 GGGCAATGAGCTAAAATACAGCAT 59.962 41.667 0.00 0.00 44.79 3.79
2597 3112 3.381272 GGGCAATGAGCTAAAATACAGCA 59.619 43.478 0.00 0.00 44.79 4.41
2598 3113 3.548818 CGGGCAATGAGCTAAAATACAGC 60.549 47.826 0.00 0.00 44.79 4.40
2599 3114 3.548818 GCGGGCAATGAGCTAAAATACAG 60.549 47.826 0.00 0.00 44.79 2.74
2600 3115 2.357637 GCGGGCAATGAGCTAAAATACA 59.642 45.455 0.00 0.00 44.79 2.29
2601 3116 2.287608 GGCGGGCAATGAGCTAAAATAC 60.288 50.000 0.00 0.00 44.79 1.89
2602 3117 1.953686 GGCGGGCAATGAGCTAAAATA 59.046 47.619 0.00 0.00 44.79 1.40
2603 3118 0.746659 GGCGGGCAATGAGCTAAAAT 59.253 50.000 0.00 0.00 44.79 1.82
2604 3119 0.323360 AGGCGGGCAATGAGCTAAAA 60.323 50.000 3.78 0.00 44.79 1.52
2605 3120 0.323360 AAGGCGGGCAATGAGCTAAA 60.323 50.000 3.78 0.00 44.79 1.85
2606 3121 0.748005 GAAGGCGGGCAATGAGCTAA 60.748 55.000 3.78 0.00 44.79 3.09
2607 3122 1.153168 GAAGGCGGGCAATGAGCTA 60.153 57.895 3.78 0.00 44.79 3.32
2608 3123 2.439156 GAAGGCGGGCAATGAGCT 60.439 61.111 3.78 0.00 44.79 4.09
2609 3124 2.751436 TGAAGGCGGGCAATGAGC 60.751 61.111 3.78 0.00 44.65 4.26
2610 3125 2.409870 GGTGAAGGCGGGCAATGAG 61.410 63.158 3.78 0.00 0.00 2.90
2611 3126 2.361104 GGTGAAGGCGGGCAATGA 60.361 61.111 3.78 0.00 0.00 2.57
2612 3127 2.274645 TTGGTGAAGGCGGGCAATG 61.275 57.895 3.78 0.00 0.00 2.82
2613 3128 2.117206 TTGGTGAAGGCGGGCAAT 59.883 55.556 3.78 0.00 0.00 3.56
2614 3129 2.058125 TAGTTGGTGAAGGCGGGCAA 62.058 55.000 3.78 0.00 0.00 4.52
2615 3130 2.463589 CTAGTTGGTGAAGGCGGGCA 62.464 60.000 3.78 0.00 0.00 5.36
2616 3131 1.745489 CTAGTTGGTGAAGGCGGGC 60.745 63.158 0.00 0.00 0.00 6.13
2617 3132 1.078426 CCTAGTTGGTGAAGGCGGG 60.078 63.158 0.00 0.00 0.00 6.13
2618 3133 1.078426 CCCTAGTTGGTGAAGGCGG 60.078 63.158 0.00 0.00 0.00 6.13
2619 3134 0.899720 TACCCTAGTTGGTGAAGGCG 59.100 55.000 1.21 0.00 39.53 5.52
2620 3135 1.407025 GCTACCCTAGTTGGTGAAGGC 60.407 57.143 1.21 0.00 39.53 4.35
2621 3136 1.906574 TGCTACCCTAGTTGGTGAAGG 59.093 52.381 1.21 0.00 39.53 3.46
2622 3137 3.914426 ATGCTACCCTAGTTGGTGAAG 57.086 47.619 1.21 0.00 39.53 3.02
2623 3138 4.098155 TGTATGCTACCCTAGTTGGTGAA 58.902 43.478 1.21 0.00 39.53 3.18
2624 3139 3.715287 TGTATGCTACCCTAGTTGGTGA 58.285 45.455 1.21 0.00 39.53 4.02
2625 3140 4.100963 TGATGTATGCTACCCTAGTTGGTG 59.899 45.833 1.21 0.00 39.53 4.17
2626 3141 4.295201 TGATGTATGCTACCCTAGTTGGT 58.705 43.478 0.00 0.00 42.62 3.67
2627 3142 4.955811 TGATGTATGCTACCCTAGTTGG 57.044 45.455 0.00 0.00 0.00 3.77
2628 3143 6.763355 AGATTGATGTATGCTACCCTAGTTG 58.237 40.000 0.00 0.00 0.00 3.16
2629 3144 7.380423 AAGATTGATGTATGCTACCCTAGTT 57.620 36.000 0.00 0.00 0.00 2.24
2630 3145 7.509318 TGTAAGATTGATGTATGCTACCCTAGT 59.491 37.037 0.00 0.00 0.00 2.57
2631 3146 7.896811 TGTAAGATTGATGTATGCTACCCTAG 58.103 38.462 0.00 0.00 0.00 3.02
2632 3147 7.849322 TGTAAGATTGATGTATGCTACCCTA 57.151 36.000 0.00 0.00 0.00 3.53
2633 3148 6.747414 TGTAAGATTGATGTATGCTACCCT 57.253 37.500 0.00 0.00 0.00 4.34
2634 3149 7.880195 AGATTGTAAGATTGATGTATGCTACCC 59.120 37.037 0.00 0.00 0.00 3.69
2635 3150 8.839310 AGATTGTAAGATTGATGTATGCTACC 57.161 34.615 0.00 0.00 0.00 3.18
2664 3179 1.855513 ACGGACGAACGAACATGAAA 58.144 45.000 0.00 0.00 37.61 2.69
2667 3182 3.774282 TTTAACGGACGAACGAACATG 57.226 42.857 10.16 0.00 37.61 3.21
2669 3184 4.545610 ACTATTTAACGGACGAACGAACA 58.454 39.130 10.16 0.00 37.61 3.18
2670 3185 4.030641 GGACTATTTAACGGACGAACGAAC 59.969 45.833 10.16 0.00 37.61 3.95
2671 3186 4.165779 GGACTATTTAACGGACGAACGAA 58.834 43.478 10.16 0.00 37.61 3.85
2672 3187 3.427503 GGGACTATTTAACGGACGAACGA 60.428 47.826 10.16 0.00 37.61 3.85
2673 3188 2.854185 GGGACTATTTAACGGACGAACG 59.146 50.000 0.00 0.00 40.31 3.95
2674 3189 3.614176 GTGGGACTATTTAACGGACGAAC 59.386 47.826 0.00 0.00 0.00 3.95
2675 3190 3.368323 GGTGGGACTATTTAACGGACGAA 60.368 47.826 0.00 0.00 0.00 3.85
2676 3191 2.166254 GGTGGGACTATTTAACGGACGA 59.834 50.000 0.00 0.00 0.00 4.20
2678 3193 3.196254 TGAGGTGGGACTATTTAACGGAC 59.804 47.826 0.00 0.00 0.00 4.79
2680 3195 3.899052 TGAGGTGGGACTATTTAACGG 57.101 47.619 0.00 0.00 0.00 4.44
2681 3196 6.753107 AAAATGAGGTGGGACTATTTAACG 57.247 37.500 0.00 0.00 0.00 3.18
2709 4097 8.125978 ACATATATAAAATGGTGGAATGCTGG 57.874 34.615 4.11 0.00 0.00 4.85
2710 4098 8.246180 GGACATATATAAAATGGTGGAATGCTG 58.754 37.037 4.11 0.00 0.00 4.41
2711 4099 7.397192 GGGACATATATAAAATGGTGGAATGCT 59.603 37.037 4.11 0.00 0.00 3.79
2712 4100 7.363793 GGGGACATATATAAAATGGTGGAATGC 60.364 40.741 4.11 0.00 0.00 3.56
2713 4101 7.673504 TGGGGACATATATAAAATGGTGGAATG 59.326 37.037 4.11 0.00 33.40 2.67
2714 4102 7.774713 TGGGGACATATATAAAATGGTGGAAT 58.225 34.615 4.11 0.00 33.40 3.01
2715 4103 7.168022 TGGGGACATATATAAAATGGTGGAA 57.832 36.000 4.11 0.00 33.40 3.53
2716 4104 6.788509 TGGGGACATATATAAAATGGTGGA 57.211 37.500 4.11 0.00 33.40 4.02
2717 4105 7.010160 ACTTGGGGACATATATAAAATGGTGG 58.990 38.462 4.11 0.00 42.32 4.61
2718 4106 8.477419 AACTTGGGGACATATATAAAATGGTG 57.523 34.615 4.11 0.00 42.32 4.17
2737 4125 5.677319 TGTTGAGACCCTAGATAACTTGG 57.323 43.478 0.00 0.00 38.43 3.61
2738 4126 5.582665 GCTTGTTGAGACCCTAGATAACTTG 59.417 44.000 0.00 0.00 0.00 3.16
2739 4127 5.338463 GGCTTGTTGAGACCCTAGATAACTT 60.338 44.000 0.00 0.00 0.00 2.66
2740 4128 4.162509 GGCTTGTTGAGACCCTAGATAACT 59.837 45.833 0.00 0.00 0.00 2.24
2741 4129 4.443621 GGCTTGTTGAGACCCTAGATAAC 58.556 47.826 0.00 0.00 0.00 1.89
2742 4130 3.132289 CGGCTTGTTGAGACCCTAGATAA 59.868 47.826 0.00 0.00 0.00 1.75
2743 4131 2.693591 CGGCTTGTTGAGACCCTAGATA 59.306 50.000 0.00 0.00 0.00 1.98
2744 4132 1.482593 CGGCTTGTTGAGACCCTAGAT 59.517 52.381 0.00 0.00 0.00 1.98
2745 4133 0.895530 CGGCTTGTTGAGACCCTAGA 59.104 55.000 0.00 0.00 0.00 2.43
2746 4134 0.608640 ACGGCTTGTTGAGACCCTAG 59.391 55.000 0.00 0.00 0.00 3.02
2747 4135 0.606604 GACGGCTTGTTGAGACCCTA 59.393 55.000 0.00 0.00 0.00 3.53
2748 4136 1.122019 AGACGGCTTGTTGAGACCCT 61.122 55.000 0.00 0.00 0.00 4.34
2749 4137 0.250338 AAGACGGCTTGTTGAGACCC 60.250 55.000 0.45 0.00 31.83 4.46
2750 4138 0.868406 CAAGACGGCTTGTTGAGACC 59.132 55.000 23.37 0.00 45.10 3.85
2757 4145 7.309621 TACTTATTAGTTCTCAAGACGGCTTGT 60.310 37.037 29.50 13.37 42.38 3.16
2758 4146 7.033791 TACTTATTAGTTCTCAAGACGGCTTG 58.966 38.462 25.62 25.62 42.72 4.01
2759 4147 6.038997 ACTTATTAGTTCTCAAGACGGCTT 57.961 37.500 0.00 0.00 33.74 4.35
2760 4148 5.662674 ACTTATTAGTTCTCAAGACGGCT 57.337 39.130 0.00 0.00 0.00 5.52
2761 4149 6.793349 TCTACTTATTAGTTCTCAAGACGGC 58.207 40.000 0.00 0.00 35.78 5.68
2762 4150 7.419204 CCTCTACTTATTAGTTCTCAAGACGG 58.581 42.308 0.00 0.00 35.78 4.79
2763 4151 7.067251 ACCCTCTACTTATTAGTTCTCAAGACG 59.933 40.741 0.00 0.00 35.78 4.18
2764 4152 8.192110 CACCCTCTACTTATTAGTTCTCAAGAC 58.808 40.741 0.00 0.00 35.78 3.01
2765 4153 8.114102 TCACCCTCTACTTATTAGTTCTCAAGA 58.886 37.037 0.00 0.00 35.78 3.02
2766 4154 8.294954 TCACCCTCTACTTATTAGTTCTCAAG 57.705 38.462 0.00 0.00 35.78 3.02
2767 4155 7.342284 CCTCACCCTCTACTTATTAGTTCTCAA 59.658 40.741 0.00 0.00 35.78 3.02
2768 4156 6.834451 CCTCACCCTCTACTTATTAGTTCTCA 59.166 42.308 0.00 0.00 35.78 3.27
2769 4157 6.239092 GCCTCACCCTCTACTTATTAGTTCTC 60.239 46.154 0.00 0.00 35.78 2.87
2770 4158 5.599242 GCCTCACCCTCTACTTATTAGTTCT 59.401 44.000 0.00 0.00 35.78 3.01
2771 4159 5.221481 GGCCTCACCCTCTACTTATTAGTTC 60.221 48.000 0.00 0.00 35.78 3.01
2772 4160 4.654724 GGCCTCACCCTCTACTTATTAGTT 59.345 45.833 0.00 0.00 35.78 2.24
2773 4161 4.224762 GGCCTCACCCTCTACTTATTAGT 58.775 47.826 0.00 0.00 38.44 2.24
2774 4162 4.223953 TGGCCTCACCCTCTACTTATTAG 58.776 47.826 3.32 0.00 37.83 1.73
2775 4163 4.274794 TGGCCTCACCCTCTACTTATTA 57.725 45.455 3.32 0.00 37.83 0.98
2776 4164 3.130734 TGGCCTCACCCTCTACTTATT 57.869 47.619 3.32 0.00 37.83 1.40
2777 4165 2.868964 TGGCCTCACCCTCTACTTAT 57.131 50.000 3.32 0.00 37.83 1.73
2778 4166 2.023404 TCATGGCCTCACCCTCTACTTA 60.023 50.000 3.32 0.00 37.83 2.24
2779 4167 1.207791 CATGGCCTCACCCTCTACTT 58.792 55.000 3.32 0.00 37.83 2.24
2780 4168 0.339859 TCATGGCCTCACCCTCTACT 59.660 55.000 3.32 0.00 37.83 2.57
2781 4169 1.346068 GATCATGGCCTCACCCTCTAC 59.654 57.143 3.32 0.00 37.83 2.59
2782 4170 1.221523 AGATCATGGCCTCACCCTCTA 59.778 52.381 3.32 0.00 37.83 2.43
2783 4171 0.030297 AGATCATGGCCTCACCCTCT 60.030 55.000 3.32 0.00 37.83 3.69
2784 4172 1.722034 TAGATCATGGCCTCACCCTC 58.278 55.000 3.32 0.00 37.83 4.30
2785 4173 2.196742 TTAGATCATGGCCTCACCCT 57.803 50.000 3.32 0.00 37.83 4.34
2786 4174 3.515602 AATTAGATCATGGCCTCACCC 57.484 47.619 3.32 0.00 37.83 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.