Multiple sequence alignment - TraesCS4D01G355300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G355300 chr4D 100.000 2406 0 0 1 2406 504510646 504513051 0.000000e+00 4444.0
1 TraesCS4D01G355300 chr4D 95.086 814 10 9 798 1598 504561916 504562712 0.000000e+00 1254.0
2 TraesCS4D01G355300 chr4D 81.980 505 72 14 868 1365 465757712 465757220 6.190000e-111 411.0
3 TraesCS4D01G355300 chr4B 91.658 959 47 19 711 1662 651147394 651148326 0.000000e+00 1297.0
4 TraesCS4D01G355300 chr4B 81.890 508 67 14 868 1365 582751752 582751260 2.880000e-109 405.0
5 TraesCS4D01G355300 chr7D 99.534 644 3 0 71 714 606961896 606962539 0.000000e+00 1173.0
6 TraesCS4D01G355300 chr7D 91.553 367 27 3 1695 2060 69865176 69864813 9.930000e-139 503.0
7 TraesCS4D01G355300 chrUn 89.934 914 68 15 793 1694 394590895 394589994 0.000000e+00 1157.0
8 TraesCS4D01G355300 chr5A 95.192 624 21 2 711 1331 689177127 689177744 0.000000e+00 977.0
9 TraesCS4D01G355300 chr5A 88.327 771 60 20 793 1551 689185562 689186314 0.000000e+00 898.0
10 TraesCS4D01G355300 chr4A 88.965 734 48 9 1695 2406 687053355 687054077 0.000000e+00 876.0
11 TraesCS4D01G355300 chr4A 80.792 505 72 12 868 1365 4822867 4823353 2.920000e-99 372.0
12 TraesCS4D01G355300 chr4A 100.000 29 0 0 1666 1694 737710857 737710829 1.000000e-03 54.7
13 TraesCS4D01G355300 chr4A 100.000 28 0 0 1667 1694 674937188 674937215 4.000000e-03 52.8
14 TraesCS4D01G355300 chr2B 88.520 662 50 14 71 712 664127877 664128532 0.000000e+00 778.0
15 TraesCS4D01G355300 chr2B 91.813 342 22 4 1720 2060 78868149 78868485 2.800000e-129 472.0
16 TraesCS4D01G355300 chr7B 96.296 459 13 2 260 714 692838527 692838069 0.000000e+00 750.0
17 TraesCS4D01G355300 chr2A 87.029 663 56 17 71 712 696849615 696850268 0.000000e+00 721.0
18 TraesCS4D01G355300 chr2D 90.300 433 25 9 286 711 556926512 556926934 3.500000e-153 551.0
19 TraesCS4D01G355300 chr2D 88.462 208 21 2 1697 1902 36118405 36118199 5.140000e-62 248.0
20 TraesCS4D01G355300 chr2D 82.251 231 27 7 71 287 556926200 556926430 1.140000e-43 187.0
21 TraesCS4D01G355300 chr7A 84.254 489 65 10 1699 2182 38236133 38235652 1.300000e-127 466.0
22 TraesCS4D01G355300 chr7A 84.270 267 19 2 1695 1938 39311096 39311362 3.090000e-59 239.0
23 TraesCS4D01G355300 chr3B 83.845 489 69 8 1699 2182 392465844 392465361 7.840000e-125 457.0
24 TraesCS4D01G355300 chr3B 79.960 494 81 16 1699 2182 802689942 802689457 4.920000e-92 348.0
25 TraesCS4D01G355300 chr6B 94.444 36 2 0 1661 1696 461848656 461848691 3.340000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G355300 chr4D 504510646 504513051 2405 False 4444 4444 100.0000 1 2406 1 chr4D.!!$F1 2405
1 TraesCS4D01G355300 chr4D 504561916 504562712 796 False 1254 1254 95.0860 798 1598 1 chr4D.!!$F2 800
2 TraesCS4D01G355300 chr4B 651147394 651148326 932 False 1297 1297 91.6580 711 1662 1 chr4B.!!$F1 951
3 TraesCS4D01G355300 chr7D 606961896 606962539 643 False 1173 1173 99.5340 71 714 1 chr7D.!!$F1 643
4 TraesCS4D01G355300 chrUn 394589994 394590895 901 True 1157 1157 89.9340 793 1694 1 chrUn.!!$R1 901
5 TraesCS4D01G355300 chr5A 689177127 689177744 617 False 977 977 95.1920 711 1331 1 chr5A.!!$F1 620
6 TraesCS4D01G355300 chr5A 689185562 689186314 752 False 898 898 88.3270 793 1551 1 chr5A.!!$F2 758
7 TraesCS4D01G355300 chr4A 687053355 687054077 722 False 876 876 88.9650 1695 2406 1 chr4A.!!$F3 711
8 TraesCS4D01G355300 chr2B 664127877 664128532 655 False 778 778 88.5200 71 712 1 chr2B.!!$F2 641
9 TraesCS4D01G355300 chr2A 696849615 696850268 653 False 721 721 87.0290 71 712 1 chr2A.!!$F1 641
10 TraesCS4D01G355300 chr2D 556926200 556926934 734 False 369 551 86.2755 71 711 2 chr2D.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 597 0.030638 CAAGAAGGTTTGCGTGTGGG 59.969 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1693 0.028902 CGACAGTGGATGCATGCATG 59.971 55.0 36.73 25.12 36.7 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.358298 AAACTAAAGATCACGCAAGGTTC 57.642 39.130 0.00 0.00 46.39 3.62
23 24 4.002906 ACTAAAGATCACGCAAGGTTCA 57.997 40.909 0.00 0.00 46.39 3.18
24 25 3.746492 ACTAAAGATCACGCAAGGTTCAC 59.254 43.478 0.00 0.00 46.39 3.18
25 26 2.550830 AAGATCACGCAAGGTTCACT 57.449 45.000 0.00 0.00 46.39 3.41
26 27 3.678056 AAGATCACGCAAGGTTCACTA 57.322 42.857 0.00 0.00 46.39 2.74
27 28 3.678056 AGATCACGCAAGGTTCACTAA 57.322 42.857 0.00 0.00 46.39 2.24
28 29 4.002906 AGATCACGCAAGGTTCACTAAA 57.997 40.909 0.00 0.00 46.39 1.85
29 30 3.746492 AGATCACGCAAGGTTCACTAAAC 59.254 43.478 0.00 0.00 46.39 2.01
30 31 3.188159 TCACGCAAGGTTCACTAAACT 57.812 42.857 0.00 0.00 46.39 2.66
31 32 3.128349 TCACGCAAGGTTCACTAAACTC 58.872 45.455 0.00 0.00 46.39 3.01
32 33 2.223377 CACGCAAGGTTCACTAAACTCC 59.777 50.000 0.00 0.00 46.39 3.85
33 34 2.158871 ACGCAAGGTTCACTAAACTCCA 60.159 45.455 0.00 0.00 46.39 3.86
34 35 3.074412 CGCAAGGTTCACTAAACTCCAT 58.926 45.455 0.00 0.00 38.02 3.41
35 36 3.502211 CGCAAGGTTCACTAAACTCCATT 59.498 43.478 0.00 0.00 38.02 3.16
36 37 4.378459 CGCAAGGTTCACTAAACTCCATTC 60.378 45.833 0.00 0.00 38.02 2.67
37 38 4.082733 GCAAGGTTCACTAAACTCCATTCC 60.083 45.833 0.00 0.00 38.02 3.01
38 39 4.993705 AGGTTCACTAAACTCCATTCCA 57.006 40.909 0.00 0.00 38.02 3.53
39 40 4.911390 AGGTTCACTAAACTCCATTCCAG 58.089 43.478 0.00 0.00 38.02 3.86
40 41 3.440522 GGTTCACTAAACTCCATTCCAGC 59.559 47.826 0.00 0.00 38.02 4.85
41 42 3.350219 TCACTAAACTCCATTCCAGCC 57.650 47.619 0.00 0.00 0.00 4.85
42 43 2.009774 CACTAAACTCCATTCCAGCCG 58.990 52.381 0.00 0.00 0.00 5.52
43 44 1.628846 ACTAAACTCCATTCCAGCCGT 59.371 47.619 0.00 0.00 0.00 5.68
44 45 2.009774 CTAAACTCCATTCCAGCCGTG 58.990 52.381 0.00 0.00 0.00 4.94
45 46 1.244019 AAACTCCATTCCAGCCGTGC 61.244 55.000 0.00 0.00 0.00 5.34
46 47 2.046023 CTCCATTCCAGCCGTGCA 60.046 61.111 0.00 0.00 0.00 4.57
47 48 1.452651 CTCCATTCCAGCCGTGCAT 60.453 57.895 0.00 0.00 0.00 3.96
48 49 0.179048 CTCCATTCCAGCCGTGCATA 60.179 55.000 0.00 0.00 0.00 3.14
49 50 0.473755 TCCATTCCAGCCGTGCATAT 59.526 50.000 0.00 0.00 0.00 1.78
50 51 1.696884 TCCATTCCAGCCGTGCATATA 59.303 47.619 0.00 0.00 0.00 0.86
51 52 2.305635 TCCATTCCAGCCGTGCATATAT 59.694 45.455 0.00 0.00 0.00 0.86
52 53 2.679837 CCATTCCAGCCGTGCATATATC 59.320 50.000 0.00 0.00 0.00 1.63
53 54 3.337358 CATTCCAGCCGTGCATATATCA 58.663 45.455 0.00 0.00 0.00 2.15
54 55 2.455674 TCCAGCCGTGCATATATCAC 57.544 50.000 0.00 5.65 0.00 3.06
55 56 1.970640 TCCAGCCGTGCATATATCACT 59.029 47.619 0.00 0.00 32.54 3.41
56 57 3.161866 TCCAGCCGTGCATATATCACTA 58.838 45.455 0.00 0.00 32.54 2.74
57 58 3.576550 TCCAGCCGTGCATATATCACTAA 59.423 43.478 0.00 0.00 32.54 2.24
58 59 4.039852 TCCAGCCGTGCATATATCACTAAA 59.960 41.667 0.00 0.00 32.54 1.85
59 60 4.754618 CCAGCCGTGCATATATCACTAAAA 59.245 41.667 0.00 0.00 32.54 1.52
60 61 5.334105 CCAGCCGTGCATATATCACTAAAAC 60.334 44.000 0.00 0.00 32.54 2.43
61 62 4.755123 AGCCGTGCATATATCACTAAAACC 59.245 41.667 0.00 0.00 32.54 3.27
62 63 4.513692 GCCGTGCATATATCACTAAAACCA 59.486 41.667 0.00 0.00 32.54 3.67
63 64 5.008217 GCCGTGCATATATCACTAAAACCAA 59.992 40.000 0.00 0.00 32.54 3.67
64 65 6.427150 CCGTGCATATATCACTAAAACCAAC 58.573 40.000 0.00 0.00 32.54 3.77
65 66 6.037720 CCGTGCATATATCACTAAAACCAACA 59.962 38.462 0.00 0.00 32.54 3.33
66 67 7.414651 CCGTGCATATATCACTAAAACCAACAA 60.415 37.037 0.00 0.00 32.54 2.83
67 68 7.639850 CGTGCATATATCACTAAAACCAACAAG 59.360 37.037 0.00 0.00 32.54 3.16
68 69 7.432252 GTGCATATATCACTAAAACCAACAAGC 59.568 37.037 0.00 0.00 0.00 4.01
69 70 6.918022 GCATATATCACTAAAACCAACAAGCC 59.082 38.462 0.00 0.00 0.00 4.35
476 583 3.147132 TGCCGGAGCAGACAAGAA 58.853 55.556 5.05 0.00 46.52 2.52
477 584 1.004560 TGCCGGAGCAGACAAGAAG 60.005 57.895 5.05 0.00 46.52 2.85
478 585 1.743252 GCCGGAGCAGACAAGAAGG 60.743 63.158 5.05 0.00 39.53 3.46
479 586 1.674057 CCGGAGCAGACAAGAAGGT 59.326 57.895 0.00 0.00 0.00 3.50
480 587 0.035458 CCGGAGCAGACAAGAAGGTT 59.965 55.000 0.00 0.00 0.00 3.50
481 588 1.543429 CCGGAGCAGACAAGAAGGTTT 60.543 52.381 0.00 0.00 0.00 3.27
482 589 1.532868 CGGAGCAGACAAGAAGGTTTG 59.467 52.381 0.00 0.00 0.00 2.93
483 590 1.268079 GGAGCAGACAAGAAGGTTTGC 59.732 52.381 1.08 1.08 46.08 3.68
484 591 3.461843 GCAGACAAGAAGGTTTGCG 57.538 52.632 0.00 0.00 38.81 4.85
485 592 0.663153 GCAGACAAGAAGGTTTGCGT 59.337 50.000 0.00 0.00 38.81 5.24
486 593 1.597937 GCAGACAAGAAGGTTTGCGTG 60.598 52.381 0.00 0.00 38.81 5.34
487 594 1.670811 CAGACAAGAAGGTTTGCGTGT 59.329 47.619 0.00 0.00 0.00 4.49
488 595 1.670811 AGACAAGAAGGTTTGCGTGTG 59.329 47.619 0.00 0.00 0.00 3.82
489 596 0.738389 ACAAGAAGGTTTGCGTGTGG 59.262 50.000 0.00 0.00 0.00 4.17
490 597 0.030638 CAAGAAGGTTTGCGTGTGGG 59.969 55.000 0.00 0.00 0.00 4.61
491 598 0.106918 AAGAAGGTTTGCGTGTGGGA 60.107 50.000 0.00 0.00 0.00 4.37
492 599 0.110486 AGAAGGTTTGCGTGTGGGAT 59.890 50.000 0.00 0.00 0.00 3.85
493 600 0.240945 GAAGGTTTGCGTGTGGGATG 59.759 55.000 0.00 0.00 0.00 3.51
494 601 0.467290 AAGGTTTGCGTGTGGGATGT 60.467 50.000 0.00 0.00 0.00 3.06
495 602 1.172180 AGGTTTGCGTGTGGGATGTG 61.172 55.000 0.00 0.00 0.00 3.21
496 603 1.285641 GTTTGCGTGTGGGATGTGG 59.714 57.895 0.00 0.00 0.00 4.17
497 604 1.149401 TTTGCGTGTGGGATGTGGA 59.851 52.632 0.00 0.00 0.00 4.02
498 605 0.251121 TTTGCGTGTGGGATGTGGAT 60.251 50.000 0.00 0.00 0.00 3.41
499 606 0.959867 TTGCGTGTGGGATGTGGATG 60.960 55.000 0.00 0.00 0.00 3.51
500 607 2.114670 GCGTGTGGGATGTGGATGG 61.115 63.158 0.00 0.00 0.00 3.51
501 608 1.299648 CGTGTGGGATGTGGATGGT 59.700 57.895 0.00 0.00 0.00 3.55
502 609 1.026182 CGTGTGGGATGTGGATGGTG 61.026 60.000 0.00 0.00 0.00 4.17
503 610 0.680921 GTGTGGGATGTGGATGGTGG 60.681 60.000 0.00 0.00 0.00 4.61
504 611 0.844221 TGTGGGATGTGGATGGTGGA 60.844 55.000 0.00 0.00 0.00 4.02
505 612 0.552848 GTGGGATGTGGATGGTGGAT 59.447 55.000 0.00 0.00 0.00 3.41
506 613 1.063717 GTGGGATGTGGATGGTGGATT 60.064 52.381 0.00 0.00 0.00 3.01
507 614 1.645391 TGGGATGTGGATGGTGGATTT 59.355 47.619 0.00 0.00 0.00 2.17
508 615 2.044215 TGGGATGTGGATGGTGGATTTT 59.956 45.455 0.00 0.00 0.00 1.82
509 616 2.431782 GGGATGTGGATGGTGGATTTTG 59.568 50.000 0.00 0.00 0.00 2.44
510 617 2.159057 GGATGTGGATGGTGGATTTTGC 60.159 50.000 0.00 0.00 0.00 3.68
511 618 2.006805 TGTGGATGGTGGATTTTGCA 57.993 45.000 0.00 0.00 0.00 4.08
512 619 1.617850 TGTGGATGGTGGATTTTGCAC 59.382 47.619 0.00 0.00 38.03 4.57
513 620 1.617850 GTGGATGGTGGATTTTGCACA 59.382 47.619 1.63 0.00 40.73 4.57
514 621 1.617850 TGGATGGTGGATTTTGCACAC 59.382 47.619 1.63 0.00 40.73 3.82
515 622 1.617850 GGATGGTGGATTTTGCACACA 59.382 47.619 6.71 0.00 40.73 3.72
516 623 2.234414 GGATGGTGGATTTTGCACACAT 59.766 45.455 6.71 2.96 40.73 3.21
517 624 3.306919 GGATGGTGGATTTTGCACACATT 60.307 43.478 6.71 0.00 40.73 2.71
518 625 3.834489 TGGTGGATTTTGCACACATTT 57.166 38.095 6.71 0.00 40.73 2.32
519 626 3.726607 TGGTGGATTTTGCACACATTTC 58.273 40.909 6.71 0.00 40.73 2.17
520 627 3.387374 TGGTGGATTTTGCACACATTTCT 59.613 39.130 6.71 0.00 40.73 2.52
521 628 4.141756 TGGTGGATTTTGCACACATTTCTT 60.142 37.500 6.71 0.00 40.73 2.52
522 629 4.815846 GGTGGATTTTGCACACATTTCTTT 59.184 37.500 6.71 0.00 40.73 2.52
523 630 5.988561 GGTGGATTTTGCACACATTTCTTTA 59.011 36.000 6.71 0.00 40.73 1.85
524 631 6.146021 GGTGGATTTTGCACACATTTCTTTAG 59.854 38.462 6.71 0.00 40.73 1.85
525 632 6.922957 GTGGATTTTGCACACATTTCTTTAGA 59.077 34.615 0.00 0.00 38.66 2.10
526 633 7.115378 GTGGATTTTGCACACATTTCTTTAGAG 59.885 37.037 0.00 0.00 38.66 2.43
527 634 6.587608 GGATTTTGCACACATTTCTTTAGAGG 59.412 38.462 0.00 0.00 0.00 3.69
528 635 6.463995 TTTTGCACACATTTCTTTAGAGGT 57.536 33.333 0.00 0.00 0.00 3.85
529 636 5.689383 TTGCACACATTTCTTTAGAGGTC 57.311 39.130 0.00 0.00 0.00 3.85
530 637 4.713553 TGCACACATTTCTTTAGAGGTCA 58.286 39.130 0.00 0.00 0.00 4.02
531 638 5.316167 TGCACACATTTCTTTAGAGGTCAT 58.684 37.500 0.00 0.00 0.00 3.06
532 639 6.472016 TGCACACATTTCTTTAGAGGTCATA 58.528 36.000 0.00 0.00 0.00 2.15
533 640 6.371548 TGCACACATTTCTTTAGAGGTCATAC 59.628 38.462 0.00 0.00 0.00 2.39
534 641 6.371548 GCACACATTTCTTTAGAGGTCATACA 59.628 38.462 0.00 0.00 0.00 2.29
535 642 7.413438 GCACACATTTCTTTAGAGGTCATACAG 60.413 40.741 0.00 0.00 0.00 2.74
536 643 7.065085 CACACATTTCTTTAGAGGTCATACAGG 59.935 40.741 0.00 0.00 0.00 4.00
537 644 7.106239 CACATTTCTTTAGAGGTCATACAGGT 58.894 38.462 0.00 0.00 0.00 4.00
538 645 7.065085 CACATTTCTTTAGAGGTCATACAGGTG 59.935 40.741 0.00 0.00 0.00 4.00
539 646 6.681729 TTTCTTTAGAGGTCATACAGGTGT 57.318 37.500 0.00 0.00 0.00 4.16
540 647 6.681729 TTCTTTAGAGGTCATACAGGTGTT 57.318 37.500 0.00 0.00 0.00 3.32
541 648 6.037786 TCTTTAGAGGTCATACAGGTGTTG 57.962 41.667 0.00 0.00 0.00 3.33
542 649 5.542635 TCTTTAGAGGTCATACAGGTGTTGT 59.457 40.000 0.00 0.00 43.96 3.32
543 650 3.963428 AGAGGTCATACAGGTGTTGTC 57.037 47.619 0.00 0.00 41.29 3.18
544 651 3.239449 AGAGGTCATACAGGTGTTGTCA 58.761 45.455 0.00 0.00 41.29 3.58
545 652 3.006967 AGAGGTCATACAGGTGTTGTCAC 59.993 47.826 0.00 0.00 41.29 3.67
546 653 2.066262 GGTCATACAGGTGTTGTCACG 58.934 52.381 0.00 0.00 44.68 4.35
547 654 2.288579 GGTCATACAGGTGTTGTCACGA 60.289 50.000 0.00 0.00 44.68 4.35
548 655 2.729882 GTCATACAGGTGTTGTCACGAC 59.270 50.000 0.00 0.00 44.68 4.34
549 656 2.066262 CATACAGGTGTTGTCACGACC 58.934 52.381 0.00 0.00 44.68 4.79
550 657 1.112950 TACAGGTGTTGTCACGACCA 58.887 50.000 0.00 0.00 44.68 4.02
551 658 0.468226 ACAGGTGTTGTCACGACCAT 59.532 50.000 0.00 0.00 44.68 3.55
552 659 1.689813 ACAGGTGTTGTCACGACCATA 59.310 47.619 0.00 0.00 44.68 2.74
553 660 2.103432 ACAGGTGTTGTCACGACCATAA 59.897 45.455 0.00 0.00 44.68 1.90
554 661 3.244422 ACAGGTGTTGTCACGACCATAAT 60.244 43.478 0.00 0.00 44.68 1.28
555 662 3.125146 CAGGTGTTGTCACGACCATAATG 59.875 47.826 0.00 0.00 44.68 1.90
556 663 3.071479 GGTGTTGTCACGACCATAATGT 58.929 45.455 0.00 0.00 44.68 2.71
557 664 3.500680 GGTGTTGTCACGACCATAATGTT 59.499 43.478 0.00 0.00 44.68 2.71
558 665 4.378046 GGTGTTGTCACGACCATAATGTTC 60.378 45.833 0.00 0.00 44.68 3.18
559 666 3.749088 TGTTGTCACGACCATAATGTTCC 59.251 43.478 0.00 0.00 0.00 3.62
560 667 3.686916 TGTCACGACCATAATGTTCCA 57.313 42.857 0.00 0.00 0.00 3.53
561 668 3.331150 TGTCACGACCATAATGTTCCAC 58.669 45.455 0.00 0.00 0.00 4.02
562 669 3.244249 TGTCACGACCATAATGTTCCACA 60.244 43.478 0.00 0.00 0.00 4.17
563 670 3.749088 GTCACGACCATAATGTTCCACAA 59.251 43.478 0.00 0.00 0.00 3.33
564 671 4.214545 GTCACGACCATAATGTTCCACAAA 59.785 41.667 0.00 0.00 0.00 2.83
565 672 4.454161 TCACGACCATAATGTTCCACAAAG 59.546 41.667 0.00 0.00 0.00 2.77
566 673 4.454161 CACGACCATAATGTTCCACAAAGA 59.546 41.667 0.00 0.00 0.00 2.52
567 674 5.123820 CACGACCATAATGTTCCACAAAGAT 59.876 40.000 0.00 0.00 0.00 2.40
568 675 5.354234 ACGACCATAATGTTCCACAAAGATC 59.646 40.000 0.00 0.00 0.00 2.75
569 676 5.220854 CGACCATAATGTTCCACAAAGATCC 60.221 44.000 0.00 0.00 0.00 3.36
570 677 5.579047 ACCATAATGTTCCACAAAGATCCA 58.421 37.500 0.00 0.00 0.00 3.41
571 678 6.015918 ACCATAATGTTCCACAAAGATCCAA 58.984 36.000 0.00 0.00 0.00 3.53
572 679 6.496565 ACCATAATGTTCCACAAAGATCCAAA 59.503 34.615 0.00 0.00 0.00 3.28
573 680 7.037438 CCATAATGTTCCACAAAGATCCAAAG 58.963 38.462 0.00 0.00 0.00 2.77
574 681 4.525912 ATGTTCCACAAAGATCCAAAGC 57.474 40.909 0.00 0.00 0.00 3.51
575 682 2.293122 TGTTCCACAAAGATCCAAAGCG 59.707 45.455 0.00 0.00 0.00 4.68
576 683 0.881118 TCCACAAAGATCCAAAGCGC 59.119 50.000 0.00 0.00 0.00 5.92
577 684 0.109132 CCACAAAGATCCAAAGCGCC 60.109 55.000 2.29 0.00 0.00 6.53
578 685 0.883833 CACAAAGATCCAAAGCGCCT 59.116 50.000 2.29 0.00 0.00 5.52
579 686 1.270550 CACAAAGATCCAAAGCGCCTT 59.729 47.619 2.29 0.00 0.00 4.35
580 687 1.541588 ACAAAGATCCAAAGCGCCTTC 59.458 47.619 2.29 0.00 0.00 3.46
581 688 1.815003 CAAAGATCCAAAGCGCCTTCT 59.185 47.619 2.29 0.00 0.00 2.85
582 689 1.457346 AAGATCCAAAGCGCCTTCTG 58.543 50.000 2.29 0.00 0.00 3.02
583 690 0.393537 AGATCCAAAGCGCCTTCTGG 60.394 55.000 2.29 6.01 0.00 3.86
584 691 0.678048 GATCCAAAGCGCCTTCTGGT 60.678 55.000 2.29 0.00 35.27 4.00
585 692 0.962356 ATCCAAAGCGCCTTCTGGTG 60.962 55.000 2.29 0.00 46.17 4.17
586 693 1.600636 CCAAAGCGCCTTCTGGTGA 60.601 57.895 2.29 0.00 46.34 4.02
587 694 1.580845 CCAAAGCGCCTTCTGGTGAG 61.581 60.000 2.29 0.00 46.34 3.51
588 695 0.886490 CAAAGCGCCTTCTGGTGAGT 60.886 55.000 2.29 0.00 46.34 3.41
589 696 0.685097 AAAGCGCCTTCTGGTGAGTA 59.315 50.000 2.29 0.00 46.34 2.59
590 697 0.905357 AAGCGCCTTCTGGTGAGTAT 59.095 50.000 2.29 0.00 46.34 2.12
591 698 0.176680 AGCGCCTTCTGGTGAGTATG 59.823 55.000 2.29 0.00 46.34 2.39
592 699 0.175760 GCGCCTTCTGGTGAGTATGA 59.824 55.000 0.00 0.00 46.34 2.15
593 700 1.202580 GCGCCTTCTGGTGAGTATGAT 60.203 52.381 0.00 0.00 46.34 2.45
594 701 2.743183 GCGCCTTCTGGTGAGTATGATT 60.743 50.000 0.00 0.00 46.34 2.57
595 702 3.535561 CGCCTTCTGGTGAGTATGATTT 58.464 45.455 0.00 0.00 46.34 2.17
596 703 3.941483 CGCCTTCTGGTGAGTATGATTTT 59.059 43.478 0.00 0.00 46.34 1.82
597 704 4.201851 CGCCTTCTGGTGAGTATGATTTTG 60.202 45.833 0.00 0.00 46.34 2.44
598 705 4.096984 GCCTTCTGGTGAGTATGATTTTGG 59.903 45.833 0.00 0.00 35.27 3.28
599 706 5.500234 CCTTCTGGTGAGTATGATTTTGGA 58.500 41.667 0.00 0.00 0.00 3.53
600 707 5.587844 CCTTCTGGTGAGTATGATTTTGGAG 59.412 44.000 0.00 0.00 0.00 3.86
601 708 6.373005 TTCTGGTGAGTATGATTTTGGAGA 57.627 37.500 0.00 0.00 0.00 3.71
602 709 6.566079 TCTGGTGAGTATGATTTTGGAGAT 57.434 37.500 0.00 0.00 0.00 2.75
603 710 7.675161 TCTGGTGAGTATGATTTTGGAGATA 57.325 36.000 0.00 0.00 0.00 1.98
604 711 8.089625 TCTGGTGAGTATGATTTTGGAGATAA 57.910 34.615 0.00 0.00 0.00 1.75
605 712 8.548025 TCTGGTGAGTATGATTTTGGAGATAAA 58.452 33.333 0.00 0.00 0.00 1.40
606 713 9.347240 CTGGTGAGTATGATTTTGGAGATAAAT 57.653 33.333 0.00 0.00 0.00 1.40
607 714 9.699410 TGGTGAGTATGATTTTGGAGATAAATT 57.301 29.630 0.00 0.00 0.00 1.82
608 715 9.956720 GGTGAGTATGATTTTGGAGATAAATTG 57.043 33.333 0.00 0.00 0.00 2.32
609 716 9.455847 GTGAGTATGATTTTGGAGATAAATTGC 57.544 33.333 0.00 0.00 0.00 3.56
610 717 9.412460 TGAGTATGATTTTGGAGATAAATTGCT 57.588 29.630 0.00 0.00 0.00 3.91
616 723 9.806203 TGATTTTGGAGATAAATTGCTTACATG 57.194 29.630 0.00 0.00 0.00 3.21
617 724 9.807649 GATTTTGGAGATAAATTGCTTACATGT 57.192 29.630 2.69 2.69 0.00 3.21
618 725 8.984891 TTTTGGAGATAAATTGCTTACATGTG 57.015 30.769 9.11 0.00 0.00 3.21
619 726 7.936496 TTGGAGATAAATTGCTTACATGTGA 57.064 32.000 9.11 0.00 0.00 3.58
620 727 7.936496 TGGAGATAAATTGCTTACATGTGAA 57.064 32.000 9.11 0.00 0.00 3.18
621 728 8.347004 TGGAGATAAATTGCTTACATGTGAAA 57.653 30.769 9.11 0.00 0.00 2.69
622 729 8.801299 TGGAGATAAATTGCTTACATGTGAAAA 58.199 29.630 9.11 0.00 0.00 2.29
623 730 9.076596 GGAGATAAATTGCTTACATGTGAAAAC 57.923 33.333 9.11 0.00 0.00 2.43
624 731 9.624697 GAGATAAATTGCTTACATGTGAAAACA 57.375 29.630 9.11 0.00 0.00 2.83
639 746 8.752766 ATGTGAAAACATGATCAGTTGAAATC 57.247 30.769 0.00 4.66 0.00 2.17
640 747 6.857451 TGTGAAAACATGATCAGTTGAAATCG 59.143 34.615 0.00 0.00 0.00 3.34
641 748 7.077605 GTGAAAACATGATCAGTTGAAATCGA 58.922 34.615 0.00 0.00 0.00 3.59
642 749 7.591057 GTGAAAACATGATCAGTTGAAATCGAA 59.409 33.333 0.00 0.00 0.00 3.71
643 750 7.591057 TGAAAACATGATCAGTTGAAATCGAAC 59.409 33.333 0.00 0.00 0.00 3.95
644 751 6.808008 AACATGATCAGTTGAAATCGAACT 57.192 33.333 0.00 0.00 33.82 3.01
645 752 6.808008 ACATGATCAGTTGAAATCGAACTT 57.192 33.333 0.00 0.00 31.05 2.66
646 753 7.206981 ACATGATCAGTTGAAATCGAACTTT 57.793 32.000 0.00 0.00 31.05 2.66
647 754 7.651808 ACATGATCAGTTGAAATCGAACTTTT 58.348 30.769 0.00 0.00 31.05 2.27
648 755 8.137437 ACATGATCAGTTGAAATCGAACTTTTT 58.863 29.630 0.00 0.00 31.05 1.94
668 775 5.652994 TTTTCTTGTTGGTGCAAGTAACT 57.347 34.783 9.49 0.00 44.41 2.24
669 776 4.893424 TTCTTGTTGGTGCAAGTAACTC 57.107 40.909 9.49 0.00 44.41 3.01
670 777 3.879998 TCTTGTTGGTGCAAGTAACTCA 58.120 40.909 9.49 0.00 44.41 3.41
671 778 3.876914 TCTTGTTGGTGCAAGTAACTCAG 59.123 43.478 9.49 6.52 44.41 3.35
672 779 1.946768 TGTTGGTGCAAGTAACTCAGC 59.053 47.619 9.49 0.00 0.00 4.26
673 780 1.946768 GTTGGTGCAAGTAACTCAGCA 59.053 47.619 0.00 0.00 36.58 4.41
674 781 2.554032 GTTGGTGCAAGTAACTCAGCAT 59.446 45.455 0.00 0.00 39.43 3.79
675 782 2.862541 TGGTGCAAGTAACTCAGCATT 58.137 42.857 0.00 0.00 39.43 3.56
676 783 4.014569 TGGTGCAAGTAACTCAGCATTA 57.985 40.909 0.00 0.00 39.43 1.90
677 784 4.002982 TGGTGCAAGTAACTCAGCATTAG 58.997 43.478 0.00 0.00 39.43 1.73
678 785 3.181506 GGTGCAAGTAACTCAGCATTAGC 60.182 47.826 0.00 0.00 39.43 3.09
679 786 3.009723 TGCAAGTAACTCAGCATTAGCC 58.990 45.455 0.00 0.00 43.56 3.93
680 787 2.356069 GCAAGTAACTCAGCATTAGCCC 59.644 50.000 0.00 0.00 43.56 5.19
681 788 2.945668 CAAGTAACTCAGCATTAGCCCC 59.054 50.000 0.00 0.00 43.56 5.80
682 789 2.196595 AGTAACTCAGCATTAGCCCCA 58.803 47.619 0.00 0.00 43.56 4.96
683 790 2.092914 AGTAACTCAGCATTAGCCCCAC 60.093 50.000 0.00 0.00 43.56 4.61
684 791 0.995024 AACTCAGCATTAGCCCCACT 59.005 50.000 0.00 0.00 43.56 4.00
685 792 0.254178 ACTCAGCATTAGCCCCACTG 59.746 55.000 0.00 0.00 43.56 3.66
686 793 0.543277 CTCAGCATTAGCCCCACTGA 59.457 55.000 0.00 0.00 43.56 3.41
687 794 0.543277 TCAGCATTAGCCCCACTGAG 59.457 55.000 0.00 0.00 43.56 3.35
688 795 1.099879 CAGCATTAGCCCCACTGAGC 61.100 60.000 0.00 0.00 43.56 4.26
689 796 1.225704 GCATTAGCCCCACTGAGCT 59.774 57.895 0.00 0.00 43.20 4.09
690 797 1.099879 GCATTAGCCCCACTGAGCTG 61.100 60.000 0.00 0.00 40.28 4.24
691 798 0.254178 CATTAGCCCCACTGAGCTGT 59.746 55.000 0.00 0.00 40.28 4.40
692 799 0.995024 ATTAGCCCCACTGAGCTGTT 59.005 50.000 0.00 0.00 40.28 3.16
693 800 0.036732 TTAGCCCCACTGAGCTGTTG 59.963 55.000 0.00 0.00 40.28 3.33
694 801 1.127567 TAGCCCCACTGAGCTGTTGT 61.128 55.000 0.00 0.00 40.28 3.32
695 802 1.529244 GCCCCACTGAGCTGTTGTT 60.529 57.895 0.00 0.00 0.00 2.83
696 803 1.799258 GCCCCACTGAGCTGTTGTTG 61.799 60.000 0.00 0.00 0.00 3.33
697 804 1.174712 CCCCACTGAGCTGTTGTTGG 61.175 60.000 0.00 0.00 0.00 3.77
698 805 0.466189 CCCACTGAGCTGTTGTTGGT 60.466 55.000 0.00 0.00 0.00 3.67
699 806 1.392589 CCACTGAGCTGTTGTTGGTT 58.607 50.000 0.00 0.00 0.00 3.67
700 807 1.750778 CCACTGAGCTGTTGTTGGTTT 59.249 47.619 0.00 0.00 0.00 3.27
701 808 2.166254 CCACTGAGCTGTTGTTGGTTTT 59.834 45.455 0.00 0.00 0.00 2.43
702 809 3.380004 CCACTGAGCTGTTGTTGGTTTTA 59.620 43.478 0.00 0.00 0.00 1.52
703 810 4.498009 CCACTGAGCTGTTGTTGGTTTTAG 60.498 45.833 0.00 0.00 0.00 1.85
704 811 4.096382 CACTGAGCTGTTGTTGGTTTTAGT 59.904 41.667 0.00 0.00 0.00 2.24
705 812 4.096382 ACTGAGCTGTTGTTGGTTTTAGTG 59.904 41.667 0.00 0.00 0.00 2.74
706 813 4.265893 TGAGCTGTTGTTGGTTTTAGTGA 58.734 39.130 0.00 0.00 0.00 3.41
707 814 4.887071 TGAGCTGTTGTTGGTTTTAGTGAT 59.113 37.500 0.00 0.00 0.00 3.06
708 815 6.058833 TGAGCTGTTGTTGGTTTTAGTGATA 58.941 36.000 0.00 0.00 0.00 2.15
709 816 6.714810 TGAGCTGTTGTTGGTTTTAGTGATAT 59.285 34.615 0.00 0.00 0.00 1.63
1116 1239 1.493446 AGGGGTCCGACAAAAAGAAGT 59.507 47.619 0.00 0.00 0.00 3.01
1542 1691 1.299976 GTTCCCGTTGCTCTCCCAT 59.700 57.895 0.00 0.00 0.00 4.00
1543 1692 1.026718 GTTCCCGTTGCTCTCCCATG 61.027 60.000 0.00 0.00 0.00 3.66
1544 1693 2.819984 TTCCCGTTGCTCTCCCATGC 62.820 60.000 0.00 0.00 0.00 4.06
1545 1694 2.046023 CCGTTGCTCTCCCATGCA 60.046 61.111 0.00 0.00 37.42 3.96
1569 1718 0.101219 TGCATCCACTGTCGATCGAG 59.899 55.000 20.09 10.62 0.00 4.04
1661 1811 5.812286 TCACCTTTAACTTTGATACCCCTC 58.188 41.667 0.00 0.00 0.00 4.30
1663 1813 5.648092 CACCTTTAACTTTGATACCCCTCTG 59.352 44.000 0.00 0.00 0.00 3.35
1678 1828 2.037772 CCCTCTGTATGCATGGTACTCC 59.962 54.545 10.16 0.00 0.00 3.85
1702 1852 6.190962 CCTCTGTAAACTAATACTCGTCGAC 58.809 44.000 5.18 5.18 0.00 4.20
1709 1859 2.941453 AATACTCGTCGACACAGCAT 57.059 45.000 17.16 3.95 0.00 3.79
1717 1867 5.644206 ACTCGTCGACACAGCATATCTATAT 59.356 40.000 17.16 0.00 0.00 0.86
1762 1912 1.827969 AGTACTCTTAGGGCTGTGCTG 59.172 52.381 0.00 0.00 0.00 4.41
1849 1999 9.682465 CAACATAGGATGATATGATGAAAGGAT 57.318 33.333 0.97 0.00 37.86 3.24
1868 2018 6.152932 AGGATGTTCATTTATTGCCATCAC 57.847 37.500 0.00 0.00 36.19 3.06
1872 2022 5.874831 TGTTCATTTATTGCCATCACGTAC 58.125 37.500 0.00 0.00 0.00 3.67
1878 2028 2.943449 TTGCCATCACGTACGATACA 57.057 45.000 24.41 8.07 0.00 2.29
1879 2029 3.446310 TTGCCATCACGTACGATACAT 57.554 42.857 24.41 4.77 0.00 2.29
1880 2030 2.738135 TGCCATCACGTACGATACATG 58.262 47.619 24.41 15.98 0.00 3.21
1881 2031 1.455786 GCCATCACGTACGATACATGC 59.544 52.381 24.41 12.84 0.00 4.06
1882 2032 2.862530 GCCATCACGTACGATACATGCT 60.863 50.000 24.41 0.00 0.00 3.79
1883 2033 3.610821 GCCATCACGTACGATACATGCTA 60.611 47.826 24.41 0.00 0.00 3.49
1884 2034 3.912563 CCATCACGTACGATACATGCTAC 59.087 47.826 24.41 0.00 0.00 3.58
1885 2035 4.320275 CCATCACGTACGATACATGCTACT 60.320 45.833 24.41 0.00 0.00 2.57
1888 2038 6.362210 TCACGTACGATACATGCTACTAAA 57.638 37.500 24.41 0.00 0.00 1.85
1901 2051 7.620880 ACATGCTACTAAACAGGAGAACATAA 58.379 34.615 0.00 0.00 0.00 1.90
1903 2053 7.900782 TGCTACTAAACAGGAGAACATAAAC 57.099 36.000 0.00 0.00 0.00 2.01
1910 2060 4.910195 ACAGGAGAACATAAACTGATGCA 58.090 39.130 0.00 0.00 33.57 3.96
1924 2074 5.428496 ACTGATGCATATCCGACAAAATG 57.572 39.130 0.00 0.00 32.09 2.32
1939 2089 9.491675 TCCGACAAAATGTACTTATTGAAACTA 57.508 29.630 10.61 0.00 0.00 2.24
1955 2105 1.153706 CTACGCACGGTCCGGATTT 60.154 57.895 17.28 0.00 0.00 2.17
1956 2106 0.738412 CTACGCACGGTCCGGATTTT 60.738 55.000 17.28 0.00 0.00 1.82
1963 2113 3.557508 CACGGTCCGGATTTTACAAAAC 58.442 45.455 17.28 0.00 0.00 2.43
1965 2115 2.413108 CGGTCCGGATTTTACAAAACGG 60.413 50.000 7.81 9.15 38.28 4.44
1975 2125 7.325097 CGGATTTTACAAAACGGATATTATGCC 59.675 37.037 0.00 0.00 0.00 4.40
1988 2138 6.752351 CGGATATTATGCCATGACACTACTAC 59.248 42.308 0.00 0.00 0.00 2.73
1991 2141 0.174845 TGCCATGACACTACTACGGC 59.825 55.000 0.00 0.00 38.56 5.68
2006 2156 0.029567 ACGGCGAGATAGAAGAAGCG 59.970 55.000 16.62 0.00 0.00 4.68
2050 2201 2.950781 TCATCCTAGTGTAGCCTCCAG 58.049 52.381 0.00 0.00 0.00 3.86
2076 2227 6.481644 CAGGATTAGAGCCTGTGATAAAAGTC 59.518 42.308 4.13 0.00 46.19 3.01
2100 2252 4.373156 AGAGTGCTTTACCAATTCCAGT 57.627 40.909 0.00 0.00 0.00 4.00
2106 2258 5.815222 GTGCTTTACCAATTCCAGTGTTTTT 59.185 36.000 0.00 0.00 0.00 1.94
2194 2346 2.127271 TCATGCCCATAACACCACAG 57.873 50.000 0.00 0.00 0.00 3.66
2206 2358 2.281761 CCACAGCCACCACTCACC 60.282 66.667 0.00 0.00 0.00 4.02
2217 2369 0.804989 CCACTCACCGCCTTGAAATC 59.195 55.000 0.00 0.00 0.00 2.17
2239 2411 2.158385 ACTTCCATGTAAAGGTGGGCAA 60.158 45.455 9.23 0.00 0.00 4.52
2322 2494 6.561614 CGACGTATAGTTGCCTATATGGAAT 58.438 40.000 11.59 0.00 43.23 3.01
2349 2521 7.329471 CACTGTGTCTGCTAAATATACGCATAT 59.671 37.037 0.00 0.00 32.62 1.78
2377 2549 7.251321 AGATAAAGTCTGTCCTTGATCTTGT 57.749 36.000 0.00 0.00 38.87 3.16
2378 2550 7.684529 AGATAAAGTCTGTCCTTGATCTTGTT 58.315 34.615 0.00 0.00 38.87 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.819630 TGAACCTTGCGTGATCTTTAGTTT 59.180 37.500 0.00 0.00 0.00 2.66
1 2 4.213482 GTGAACCTTGCGTGATCTTTAGTT 59.787 41.667 0.00 0.00 0.00 2.24
2 3 3.746492 GTGAACCTTGCGTGATCTTTAGT 59.254 43.478 0.00 0.00 0.00 2.24
3 4 3.997021 AGTGAACCTTGCGTGATCTTTAG 59.003 43.478 0.00 0.00 0.00 1.85
4 5 4.002906 AGTGAACCTTGCGTGATCTTTA 57.997 40.909 0.00 0.00 0.00 1.85
5 6 2.851195 AGTGAACCTTGCGTGATCTTT 58.149 42.857 0.00 0.00 0.00 2.52
6 7 2.550830 AGTGAACCTTGCGTGATCTT 57.449 45.000 0.00 0.00 0.00 2.40
7 8 3.678056 TTAGTGAACCTTGCGTGATCT 57.322 42.857 0.00 0.00 0.00 2.75
8 9 3.746492 AGTTTAGTGAACCTTGCGTGATC 59.254 43.478 0.00 0.00 39.13 2.92
9 10 3.740115 AGTTTAGTGAACCTTGCGTGAT 58.260 40.909 0.00 0.00 39.13 3.06
10 11 3.128349 GAGTTTAGTGAACCTTGCGTGA 58.872 45.455 0.00 0.00 39.13 4.35
11 12 2.223377 GGAGTTTAGTGAACCTTGCGTG 59.777 50.000 0.00 0.00 39.13 5.34
12 13 2.158871 TGGAGTTTAGTGAACCTTGCGT 60.159 45.455 0.00 0.00 39.13 5.24
13 14 2.489971 TGGAGTTTAGTGAACCTTGCG 58.510 47.619 0.00 0.00 39.13 4.85
14 15 4.082733 GGAATGGAGTTTAGTGAACCTTGC 60.083 45.833 0.00 0.00 39.13 4.01
15 16 5.070001 TGGAATGGAGTTTAGTGAACCTTG 58.930 41.667 0.00 0.00 39.13 3.61
16 17 5.316987 CTGGAATGGAGTTTAGTGAACCTT 58.683 41.667 0.00 0.00 39.13 3.50
17 18 4.807643 GCTGGAATGGAGTTTAGTGAACCT 60.808 45.833 0.00 0.00 39.13 3.50
18 19 3.440522 GCTGGAATGGAGTTTAGTGAACC 59.559 47.826 0.00 0.00 39.13 3.62
19 20 3.440522 GGCTGGAATGGAGTTTAGTGAAC 59.559 47.826 0.00 0.00 38.58 3.18
20 21 3.686016 GGCTGGAATGGAGTTTAGTGAA 58.314 45.455 0.00 0.00 0.00 3.18
21 22 2.354704 CGGCTGGAATGGAGTTTAGTGA 60.355 50.000 0.00 0.00 0.00 3.41
22 23 2.009774 CGGCTGGAATGGAGTTTAGTG 58.990 52.381 0.00 0.00 0.00 2.74
23 24 1.628846 ACGGCTGGAATGGAGTTTAGT 59.371 47.619 0.00 0.00 0.00 2.24
24 25 2.009774 CACGGCTGGAATGGAGTTTAG 58.990 52.381 0.00 0.00 0.00 1.85
25 26 1.948611 GCACGGCTGGAATGGAGTTTA 60.949 52.381 0.00 0.00 0.00 2.01
26 27 1.244019 GCACGGCTGGAATGGAGTTT 61.244 55.000 0.00 0.00 0.00 2.66
27 28 1.675641 GCACGGCTGGAATGGAGTT 60.676 57.895 0.00 0.00 0.00 3.01
28 29 2.045926 GCACGGCTGGAATGGAGT 60.046 61.111 0.00 0.00 0.00 3.85
29 30 0.179048 TATGCACGGCTGGAATGGAG 60.179 55.000 0.00 0.00 0.00 3.86
30 31 0.473755 ATATGCACGGCTGGAATGGA 59.526 50.000 0.00 0.00 0.00 3.41
31 32 2.183478 TATATGCACGGCTGGAATGG 57.817 50.000 0.00 0.00 0.00 3.16
32 33 3.125829 GTGATATATGCACGGCTGGAATG 59.874 47.826 0.00 0.00 0.00 2.67
33 34 3.008375 AGTGATATATGCACGGCTGGAAT 59.992 43.478 0.00 0.00 41.04 3.01
34 35 2.368548 AGTGATATATGCACGGCTGGAA 59.631 45.455 0.00 0.00 41.04 3.53
35 36 1.970640 AGTGATATATGCACGGCTGGA 59.029 47.619 0.00 0.00 41.04 3.86
36 37 2.462456 AGTGATATATGCACGGCTGG 57.538 50.000 0.00 0.00 41.04 4.85
37 38 5.334105 GGTTTTAGTGATATATGCACGGCTG 60.334 44.000 0.00 0.00 41.04 4.85
38 39 4.755123 GGTTTTAGTGATATATGCACGGCT 59.245 41.667 0.00 0.00 41.04 5.52
39 40 4.513692 TGGTTTTAGTGATATATGCACGGC 59.486 41.667 0.00 0.00 41.04 5.68
40 41 6.037720 TGTTGGTTTTAGTGATATATGCACGG 59.962 38.462 0.00 0.00 41.04 4.94
41 42 7.010697 TGTTGGTTTTAGTGATATATGCACG 57.989 36.000 0.00 0.00 41.04 5.34
42 43 7.432252 GCTTGTTGGTTTTAGTGATATATGCAC 59.568 37.037 0.00 0.00 36.53 4.57
43 44 7.416213 GGCTTGTTGGTTTTAGTGATATATGCA 60.416 37.037 0.00 0.00 0.00 3.96
44 45 6.918022 GGCTTGTTGGTTTTAGTGATATATGC 59.082 38.462 0.00 0.00 0.00 3.14
45 46 8.131100 CAGGCTTGTTGGTTTTAGTGATATATG 58.869 37.037 0.00 0.00 0.00 1.78
46 47 7.834181 ACAGGCTTGTTGGTTTTAGTGATATAT 59.166 33.333 0.00 0.00 32.28 0.86
47 48 7.172342 ACAGGCTTGTTGGTTTTAGTGATATA 58.828 34.615 0.00 0.00 32.28 0.86
48 49 6.010219 ACAGGCTTGTTGGTTTTAGTGATAT 58.990 36.000 0.00 0.00 32.28 1.63
49 50 5.381757 ACAGGCTTGTTGGTTTTAGTGATA 58.618 37.500 0.00 0.00 32.28 2.15
50 51 4.215109 ACAGGCTTGTTGGTTTTAGTGAT 58.785 39.130 0.00 0.00 32.28 3.06
51 52 3.626930 ACAGGCTTGTTGGTTTTAGTGA 58.373 40.909 0.00 0.00 32.28 3.41
52 53 4.385358 AACAGGCTTGTTGGTTTTAGTG 57.615 40.909 14.09 0.00 45.54 2.74
63 64 1.494721 TCCTTCCAAGAACAGGCTTGT 59.505 47.619 0.00 0.00 42.84 3.16
64 65 2.276732 TCCTTCCAAGAACAGGCTTG 57.723 50.000 0.00 0.00 43.74 4.01
65 66 3.160269 CAATCCTTCCAAGAACAGGCTT 58.840 45.455 0.00 0.00 0.00 4.35
66 67 2.800250 CAATCCTTCCAAGAACAGGCT 58.200 47.619 0.00 0.00 0.00 4.58
67 68 1.203287 GCAATCCTTCCAAGAACAGGC 59.797 52.381 0.00 0.00 0.00 4.85
68 69 2.517959 TGCAATCCTTCCAAGAACAGG 58.482 47.619 0.00 0.00 0.00 4.00
69 70 4.796038 ATTGCAATCCTTCCAAGAACAG 57.204 40.909 5.99 0.00 0.00 3.16
471 578 0.030638 CCCACACGCAAACCTTCTTG 59.969 55.000 0.00 0.00 0.00 3.02
472 579 0.106918 TCCCACACGCAAACCTTCTT 60.107 50.000 0.00 0.00 0.00 2.52
473 580 0.110486 ATCCCACACGCAAACCTTCT 59.890 50.000 0.00 0.00 0.00 2.85
474 581 0.240945 CATCCCACACGCAAACCTTC 59.759 55.000 0.00 0.00 0.00 3.46
475 582 0.467290 ACATCCCACACGCAAACCTT 60.467 50.000 0.00 0.00 0.00 3.50
476 583 1.150536 ACATCCCACACGCAAACCT 59.849 52.632 0.00 0.00 0.00 3.50
477 584 1.285641 CACATCCCACACGCAAACC 59.714 57.895 0.00 0.00 0.00 3.27
478 585 1.169661 TCCACATCCCACACGCAAAC 61.170 55.000 0.00 0.00 0.00 2.93
479 586 0.251121 ATCCACATCCCACACGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
480 587 0.959867 CATCCACATCCCACACGCAA 60.960 55.000 0.00 0.00 0.00 4.85
481 588 1.377072 CATCCACATCCCACACGCA 60.377 57.895 0.00 0.00 0.00 5.24
482 589 2.114670 CCATCCACATCCCACACGC 61.115 63.158 0.00 0.00 0.00 5.34
483 590 1.026182 CACCATCCACATCCCACACG 61.026 60.000 0.00 0.00 0.00 4.49
484 591 0.680921 CCACCATCCACATCCCACAC 60.681 60.000 0.00 0.00 0.00 3.82
485 592 0.844221 TCCACCATCCACATCCCACA 60.844 55.000 0.00 0.00 0.00 4.17
486 593 0.552848 ATCCACCATCCACATCCCAC 59.447 55.000 0.00 0.00 0.00 4.61
487 594 1.307878 AATCCACCATCCACATCCCA 58.692 50.000 0.00 0.00 0.00 4.37
488 595 2.431782 CAAAATCCACCATCCACATCCC 59.568 50.000 0.00 0.00 0.00 3.85
489 596 2.159057 GCAAAATCCACCATCCACATCC 60.159 50.000 0.00 0.00 0.00 3.51
490 597 2.496871 TGCAAAATCCACCATCCACATC 59.503 45.455 0.00 0.00 0.00 3.06
491 598 2.234414 GTGCAAAATCCACCATCCACAT 59.766 45.455 0.00 0.00 0.00 3.21
492 599 1.617850 GTGCAAAATCCACCATCCACA 59.382 47.619 0.00 0.00 0.00 4.17
493 600 1.617850 TGTGCAAAATCCACCATCCAC 59.382 47.619 0.00 0.00 32.30 4.02
494 601 1.617850 GTGTGCAAAATCCACCATCCA 59.382 47.619 0.00 0.00 32.30 3.41
495 602 1.617850 TGTGTGCAAAATCCACCATCC 59.382 47.619 2.33 0.00 32.30 3.51
496 603 3.598019 ATGTGTGCAAAATCCACCATC 57.402 42.857 2.33 0.00 32.30 3.51
497 604 4.040706 AGAAATGTGTGCAAAATCCACCAT 59.959 37.500 2.33 0.00 32.30 3.55
498 605 3.387374 AGAAATGTGTGCAAAATCCACCA 59.613 39.130 2.33 0.00 32.30 4.17
499 606 3.993920 AGAAATGTGTGCAAAATCCACC 58.006 40.909 2.33 0.00 32.30 4.61
500 607 5.989551 AAAGAAATGTGTGCAAAATCCAC 57.010 34.783 0.00 0.00 0.00 4.02
501 608 7.048629 TCTAAAGAAATGTGTGCAAAATCCA 57.951 32.000 0.00 0.00 0.00 3.41
502 609 6.587608 CCTCTAAAGAAATGTGTGCAAAATCC 59.412 38.462 0.00 0.00 0.00 3.01
503 610 7.147976 ACCTCTAAAGAAATGTGTGCAAAATC 58.852 34.615 0.00 0.00 0.00 2.17
504 611 7.054491 ACCTCTAAAGAAATGTGTGCAAAAT 57.946 32.000 0.00 0.00 0.00 1.82
505 612 6.096141 TGACCTCTAAAGAAATGTGTGCAAAA 59.904 34.615 0.00 0.00 0.00 2.44
506 613 5.592282 TGACCTCTAAAGAAATGTGTGCAAA 59.408 36.000 0.00 0.00 0.00 3.68
507 614 5.129634 TGACCTCTAAAGAAATGTGTGCAA 58.870 37.500 0.00 0.00 0.00 4.08
508 615 4.713553 TGACCTCTAAAGAAATGTGTGCA 58.286 39.130 0.00 0.00 0.00 4.57
509 616 5.886960 ATGACCTCTAAAGAAATGTGTGC 57.113 39.130 0.00 0.00 0.00 4.57
510 617 7.065085 CCTGTATGACCTCTAAAGAAATGTGTG 59.935 40.741 0.00 0.00 0.00 3.82
511 618 7.106239 CCTGTATGACCTCTAAAGAAATGTGT 58.894 38.462 0.00 0.00 0.00 3.72
512 619 7.065085 CACCTGTATGACCTCTAAAGAAATGTG 59.935 40.741 0.00 0.00 0.00 3.21
513 620 7.106239 CACCTGTATGACCTCTAAAGAAATGT 58.894 38.462 0.00 0.00 0.00 2.71
514 621 7.106239 ACACCTGTATGACCTCTAAAGAAATG 58.894 38.462 0.00 0.00 0.00 2.32
515 622 7.259088 ACACCTGTATGACCTCTAAAGAAAT 57.741 36.000 0.00 0.00 0.00 2.17
516 623 6.681729 ACACCTGTATGACCTCTAAAGAAA 57.318 37.500 0.00 0.00 0.00 2.52
517 624 6.042781 ACAACACCTGTATGACCTCTAAAGAA 59.957 38.462 0.00 0.00 36.10 2.52
518 625 5.542635 ACAACACCTGTATGACCTCTAAAGA 59.457 40.000 0.00 0.00 36.10 2.52
519 626 5.794894 ACAACACCTGTATGACCTCTAAAG 58.205 41.667 0.00 0.00 36.10 1.85
520 627 5.305902 TGACAACACCTGTATGACCTCTAAA 59.694 40.000 0.00 0.00 38.84 1.85
521 628 4.836175 TGACAACACCTGTATGACCTCTAA 59.164 41.667 0.00 0.00 38.84 2.10
522 629 4.219944 GTGACAACACCTGTATGACCTCTA 59.780 45.833 0.00 0.00 38.84 2.43
523 630 3.006967 GTGACAACACCTGTATGACCTCT 59.993 47.826 0.00 0.00 38.84 3.69
524 631 3.326747 GTGACAACACCTGTATGACCTC 58.673 50.000 0.00 0.00 38.84 3.85
525 632 2.288825 CGTGACAACACCTGTATGACCT 60.289 50.000 0.00 0.00 43.34 3.85
526 633 2.066262 CGTGACAACACCTGTATGACC 58.934 52.381 0.00 0.00 43.34 4.02
527 634 2.729882 GTCGTGACAACACCTGTATGAC 59.270 50.000 0.00 0.00 43.34 3.06
528 635 2.288579 GGTCGTGACAACACCTGTATGA 60.289 50.000 2.00 0.00 43.34 2.15
529 636 2.066262 GGTCGTGACAACACCTGTATG 58.934 52.381 2.00 0.00 43.34 2.39
530 637 1.689813 TGGTCGTGACAACACCTGTAT 59.310 47.619 2.00 0.00 43.34 2.29
531 638 1.112950 TGGTCGTGACAACACCTGTA 58.887 50.000 2.00 0.00 43.34 2.74
532 639 0.468226 ATGGTCGTGACAACACCTGT 59.532 50.000 2.00 0.00 43.34 4.00
533 640 2.448926 TATGGTCGTGACAACACCTG 57.551 50.000 2.00 0.00 43.34 4.00
534 641 3.244422 ACATTATGGTCGTGACAACACCT 60.244 43.478 2.00 0.00 43.34 4.00
535 642 3.071479 ACATTATGGTCGTGACAACACC 58.929 45.455 2.00 0.00 43.34 4.16
536 643 4.378046 GGAACATTATGGTCGTGACAACAC 60.378 45.833 4.01 0.00 42.88 3.32
537 644 3.749088 GGAACATTATGGTCGTGACAACA 59.251 43.478 4.01 0.00 34.15 3.33
538 645 3.749088 TGGAACATTATGGTCGTGACAAC 59.251 43.478 4.01 0.00 34.15 3.32
539 646 3.749088 GTGGAACATTATGGTCGTGACAA 59.251 43.478 4.01 0.00 44.52 3.18
540 647 3.244249 TGTGGAACATTATGGTCGTGACA 60.244 43.478 4.01 4.50 45.67 3.58
541 648 3.331150 TGTGGAACATTATGGTCGTGAC 58.669 45.455 4.01 2.00 45.67 3.67
542 649 3.686916 TGTGGAACATTATGGTCGTGA 57.313 42.857 4.01 0.00 45.67 4.35
555 662 2.922335 GCGCTTTGGATCTTTGTGGAAC 60.922 50.000 0.00 0.00 37.35 3.62
556 663 1.269448 GCGCTTTGGATCTTTGTGGAA 59.731 47.619 0.00 0.00 0.00 3.53
557 664 0.881118 GCGCTTTGGATCTTTGTGGA 59.119 50.000 0.00 0.00 0.00 4.02
558 665 0.109132 GGCGCTTTGGATCTTTGTGG 60.109 55.000 7.64 0.00 0.00 4.17
559 666 0.883833 AGGCGCTTTGGATCTTTGTG 59.116 50.000 7.64 0.00 0.00 3.33
560 667 1.541588 GAAGGCGCTTTGGATCTTTGT 59.458 47.619 10.44 0.00 0.00 2.83
561 668 1.815003 AGAAGGCGCTTTGGATCTTTG 59.185 47.619 10.44 0.00 0.00 2.77
562 669 1.815003 CAGAAGGCGCTTTGGATCTTT 59.185 47.619 10.44 0.00 0.00 2.52
563 670 1.457346 CAGAAGGCGCTTTGGATCTT 58.543 50.000 10.44 0.02 0.00 2.40
564 671 0.393537 CCAGAAGGCGCTTTGGATCT 60.394 55.000 10.44 0.00 32.34 2.75
565 672 0.678048 ACCAGAAGGCGCTTTGGATC 60.678 55.000 16.35 0.00 39.06 3.36
566 673 0.962356 CACCAGAAGGCGCTTTGGAT 60.962 55.000 16.35 0.00 39.06 3.41
567 674 1.600636 CACCAGAAGGCGCTTTGGA 60.601 57.895 16.35 0.00 39.06 3.53
568 675 1.580845 CTCACCAGAAGGCGCTTTGG 61.581 60.000 10.44 9.35 39.06 3.28
569 676 0.886490 ACTCACCAGAAGGCGCTTTG 60.886 55.000 10.44 0.00 39.06 2.77
570 677 0.685097 TACTCACCAGAAGGCGCTTT 59.315 50.000 3.65 3.65 39.06 3.51
571 678 0.905357 ATACTCACCAGAAGGCGCTT 59.095 50.000 7.64 0.00 39.06 4.68
572 679 0.176680 CATACTCACCAGAAGGCGCT 59.823 55.000 7.64 0.00 39.06 5.92
573 680 0.175760 TCATACTCACCAGAAGGCGC 59.824 55.000 0.00 0.00 39.06 6.53
574 681 2.898729 ATCATACTCACCAGAAGGCG 57.101 50.000 0.00 0.00 39.06 5.52
575 682 4.096984 CCAAAATCATACTCACCAGAAGGC 59.903 45.833 0.00 0.00 39.06 4.35
576 683 5.500234 TCCAAAATCATACTCACCAGAAGG 58.500 41.667 0.00 0.00 42.21 3.46
577 684 6.409704 TCTCCAAAATCATACTCACCAGAAG 58.590 40.000 0.00 0.00 0.00 2.85
578 685 6.373005 TCTCCAAAATCATACTCACCAGAA 57.627 37.500 0.00 0.00 0.00 3.02
579 686 6.566079 ATCTCCAAAATCATACTCACCAGA 57.434 37.500 0.00 0.00 0.00 3.86
580 687 8.737168 TTTATCTCCAAAATCATACTCACCAG 57.263 34.615 0.00 0.00 0.00 4.00
581 688 9.699410 AATTTATCTCCAAAATCATACTCACCA 57.301 29.630 0.00 0.00 0.00 4.17
582 689 9.956720 CAATTTATCTCCAAAATCATACTCACC 57.043 33.333 0.00 0.00 0.00 4.02
583 690 9.455847 GCAATTTATCTCCAAAATCATACTCAC 57.544 33.333 0.00 0.00 0.00 3.51
584 691 9.412460 AGCAATTTATCTCCAAAATCATACTCA 57.588 29.630 0.00 0.00 0.00 3.41
590 697 9.806203 CATGTAAGCAATTTATCTCCAAAATCA 57.194 29.630 0.00 0.00 0.00 2.57
591 698 9.807649 ACATGTAAGCAATTTATCTCCAAAATC 57.192 29.630 0.00 0.00 0.00 2.17
592 699 9.590451 CACATGTAAGCAATTTATCTCCAAAAT 57.410 29.630 0.00 0.00 0.00 1.82
593 700 8.801299 TCACATGTAAGCAATTTATCTCCAAAA 58.199 29.630 0.00 0.00 0.00 2.44
594 701 8.347004 TCACATGTAAGCAATTTATCTCCAAA 57.653 30.769 0.00 0.00 0.00 3.28
595 702 7.936496 TCACATGTAAGCAATTTATCTCCAA 57.064 32.000 0.00 0.00 0.00 3.53
596 703 7.936496 TTCACATGTAAGCAATTTATCTCCA 57.064 32.000 0.00 0.00 0.00 3.86
597 704 9.076596 GTTTTCACATGTAAGCAATTTATCTCC 57.923 33.333 0.00 0.00 0.00 3.71
598 705 9.624697 TGTTTTCACATGTAAGCAATTTATCTC 57.375 29.630 0.00 0.00 0.00 2.75
614 721 7.539710 CGATTTCAACTGATCATGTTTTCACAT 59.460 33.333 0.00 0.00 45.18 3.21
615 722 6.857451 CGATTTCAACTGATCATGTTTTCACA 59.143 34.615 0.00 0.00 37.31 3.58
616 723 7.077605 TCGATTTCAACTGATCATGTTTTCAC 58.922 34.615 0.00 0.00 0.00 3.18
617 724 7.200778 TCGATTTCAACTGATCATGTTTTCA 57.799 32.000 0.00 0.00 0.00 2.69
618 725 7.805071 AGTTCGATTTCAACTGATCATGTTTTC 59.195 33.333 0.00 0.00 32.65 2.29
619 726 7.651808 AGTTCGATTTCAACTGATCATGTTTT 58.348 30.769 0.00 0.00 32.65 2.43
620 727 7.206981 AGTTCGATTTCAACTGATCATGTTT 57.793 32.000 0.00 0.00 32.65 2.83
621 728 6.808008 AGTTCGATTTCAACTGATCATGTT 57.192 33.333 0.00 0.08 32.65 2.71
622 729 6.808008 AAGTTCGATTTCAACTGATCATGT 57.192 33.333 0.00 0.00 34.21 3.21
623 730 8.511465 AAAAAGTTCGATTTCAACTGATCATG 57.489 30.769 0.00 0.00 34.21 3.07
651 758 2.357637 GCTGAGTTACTTGCACCAACAA 59.642 45.455 6.46 0.00 0.00 2.83
652 759 1.946768 GCTGAGTTACTTGCACCAACA 59.053 47.619 6.46 0.00 0.00 3.33
653 760 1.946768 TGCTGAGTTACTTGCACCAAC 59.053 47.619 9.24 0.00 0.00 3.77
654 761 2.340210 TGCTGAGTTACTTGCACCAA 57.660 45.000 9.24 0.00 0.00 3.67
655 762 2.566833 ATGCTGAGTTACTTGCACCA 57.433 45.000 14.04 0.00 38.29 4.17
656 763 3.181506 GCTAATGCTGAGTTACTTGCACC 60.182 47.826 14.04 3.20 38.29 5.01
657 764 3.181506 GGCTAATGCTGAGTTACTTGCAC 60.182 47.826 14.04 4.41 38.29 4.57
658 765 3.009723 GGCTAATGCTGAGTTACTTGCA 58.990 45.455 14.09 14.09 39.59 4.08
659 766 2.356069 GGGCTAATGCTGAGTTACTTGC 59.644 50.000 4.77 4.77 39.59 4.01
660 767 2.945668 GGGGCTAATGCTGAGTTACTTG 59.054 50.000 0.00 0.00 39.59 3.16
661 768 2.576191 TGGGGCTAATGCTGAGTTACTT 59.424 45.455 0.00 0.00 39.59 2.24
662 769 2.092914 GTGGGGCTAATGCTGAGTTACT 60.093 50.000 0.00 0.00 39.59 2.24
663 770 2.092914 AGTGGGGCTAATGCTGAGTTAC 60.093 50.000 0.00 0.00 39.59 2.50
664 771 2.092968 CAGTGGGGCTAATGCTGAGTTA 60.093 50.000 0.00 0.00 39.59 2.24
665 772 0.995024 AGTGGGGCTAATGCTGAGTT 59.005 50.000 0.00 0.00 39.59 3.01
666 773 0.254178 CAGTGGGGCTAATGCTGAGT 59.746 55.000 0.00 0.00 39.59 3.41
667 774 0.543277 TCAGTGGGGCTAATGCTGAG 59.457 55.000 0.00 0.00 39.59 3.35
668 775 0.543277 CTCAGTGGGGCTAATGCTGA 59.457 55.000 0.00 0.00 39.59 4.26
669 776 1.099879 GCTCAGTGGGGCTAATGCTG 61.100 60.000 0.00 0.00 39.59 4.41
670 777 1.225704 GCTCAGTGGGGCTAATGCT 59.774 57.895 0.00 0.00 39.59 3.79
671 778 1.099879 CAGCTCAGTGGGGCTAATGC 61.100 60.000 10.31 0.00 37.00 3.56
672 779 0.254178 ACAGCTCAGTGGGGCTAATG 59.746 55.000 10.31 4.06 37.00 1.90
673 780 0.995024 AACAGCTCAGTGGGGCTAAT 59.005 50.000 10.31 1.68 37.00 1.73
674 781 0.036732 CAACAGCTCAGTGGGGCTAA 59.963 55.000 10.31 0.00 37.00 3.09
675 782 1.127567 ACAACAGCTCAGTGGGGCTA 61.128 55.000 10.31 0.00 37.00 3.93
676 783 1.999634 AACAACAGCTCAGTGGGGCT 62.000 55.000 5.85 5.85 39.60 5.19
677 784 1.529244 AACAACAGCTCAGTGGGGC 60.529 57.895 0.00 0.00 0.00 5.80
678 785 1.174712 CCAACAACAGCTCAGTGGGG 61.175 60.000 0.00 0.00 0.00 4.96
679 786 0.466189 ACCAACAACAGCTCAGTGGG 60.466 55.000 2.31 2.31 0.00 4.61
680 787 1.392589 AACCAACAACAGCTCAGTGG 58.607 50.000 0.00 0.00 0.00 4.00
681 788 3.508744 AAAACCAACAACAGCTCAGTG 57.491 42.857 0.00 0.00 0.00 3.66
682 789 4.096382 CACTAAAACCAACAACAGCTCAGT 59.904 41.667 0.00 0.00 0.00 3.41
683 790 4.335315 TCACTAAAACCAACAACAGCTCAG 59.665 41.667 0.00 0.00 0.00 3.35
684 791 4.265893 TCACTAAAACCAACAACAGCTCA 58.734 39.130 0.00 0.00 0.00 4.26
685 792 4.893424 TCACTAAAACCAACAACAGCTC 57.107 40.909 0.00 0.00 0.00 4.09
686 793 8.677300 CATATATCACTAAAACCAACAACAGCT 58.323 33.333 0.00 0.00 0.00 4.24
687 794 7.432252 GCATATATCACTAAAACCAACAACAGC 59.568 37.037 0.00 0.00 0.00 4.40
688 795 8.458052 TGCATATATCACTAAAACCAACAACAG 58.542 33.333 0.00 0.00 0.00 3.16
689 796 8.240682 GTGCATATATCACTAAAACCAACAACA 58.759 33.333 0.00 0.00 0.00 3.33
690 797 7.428183 CGTGCATATATCACTAAAACCAACAAC 59.572 37.037 0.00 0.00 32.54 3.32
691 798 7.414651 CCGTGCATATATCACTAAAACCAACAA 60.415 37.037 0.00 0.00 32.54 2.83
692 799 6.037720 CCGTGCATATATCACTAAAACCAACA 59.962 38.462 0.00 0.00 32.54 3.33
693 800 6.427150 CCGTGCATATATCACTAAAACCAAC 58.573 40.000 0.00 0.00 32.54 3.77
694 801 5.529430 CCCGTGCATATATCACTAAAACCAA 59.471 40.000 0.00 0.00 32.54 3.67
695 802 5.060506 CCCGTGCATATATCACTAAAACCA 58.939 41.667 0.00 0.00 32.54 3.67
696 803 4.083484 GCCCGTGCATATATCACTAAAACC 60.083 45.833 0.00 0.00 37.47 3.27
697 804 4.513692 TGCCCGTGCATATATCACTAAAAC 59.486 41.667 0.00 0.00 44.23 2.43
698 805 4.709250 TGCCCGTGCATATATCACTAAAA 58.291 39.130 0.00 0.00 44.23 1.52
699 806 4.344359 TGCCCGTGCATATATCACTAAA 57.656 40.909 0.00 0.00 44.23 1.85
1116 1239 0.815095 TAGTCGATCTTCAGCGCCAA 59.185 50.000 2.29 0.00 0.00 4.52
1490 1630 2.746362 GCTTCTCCTACCATATGCATGC 59.254 50.000 11.82 11.82 0.00 4.06
1544 1693 0.028902 CGACAGTGGATGCATGCATG 59.971 55.000 36.73 25.12 36.70 4.06
1545 1694 0.107557 TCGACAGTGGATGCATGCAT 60.108 50.000 32.66 32.66 39.69 3.96
1569 1718 2.892374 ACACAAAAGAAAAGTGCTGCC 58.108 42.857 0.00 0.00 36.76 4.85
1630 1780 6.633500 TCAAAGTTAAAGGTGAATGGACAG 57.367 37.500 0.00 0.00 0.00 3.51
1661 1811 2.968574 AGAGGGAGTACCATGCATACAG 59.031 50.000 0.00 0.00 43.89 2.74
1663 1813 2.700897 ACAGAGGGAGTACCATGCATAC 59.299 50.000 0.00 0.00 43.89 2.39
1678 1828 6.183360 TGTCGACGAGTATTAGTTTACAGAGG 60.183 42.308 11.62 0.00 0.00 3.69
1702 1852 5.046376 TCACACCCCATATAGATATGCTGTG 60.046 44.000 18.48 18.48 41.43 3.66
1717 1867 5.584913 ACCATAAATAAACATCACACCCCA 58.415 37.500 0.00 0.00 0.00 4.96
1755 1905 7.558161 TTTTTATGTGATCCTATCAGCACAG 57.442 36.000 0.00 0.00 43.55 3.66
1849 1999 5.446607 CGTACGTGATGGCAATAAATGAACA 60.447 40.000 7.22 0.00 0.00 3.18
1868 2018 5.624081 CCTGTTTAGTAGCATGTATCGTACG 59.376 44.000 9.53 9.53 0.00 3.67
1872 2022 6.073327 TCTCCTGTTTAGTAGCATGTATCG 57.927 41.667 0.00 0.00 0.00 2.92
1878 2028 8.322091 AGTTTATGTTCTCCTGTTTAGTAGCAT 58.678 33.333 0.00 0.00 0.00 3.79
1879 2029 7.602644 CAGTTTATGTTCTCCTGTTTAGTAGCA 59.397 37.037 0.00 0.00 0.00 3.49
1880 2030 7.817962 TCAGTTTATGTTCTCCTGTTTAGTAGC 59.182 37.037 0.00 0.00 0.00 3.58
1881 2031 9.877178 ATCAGTTTATGTTCTCCTGTTTAGTAG 57.123 33.333 0.00 0.00 0.00 2.57
1882 2032 9.653287 CATCAGTTTATGTTCTCCTGTTTAGTA 57.347 33.333 0.00 0.00 0.00 1.82
1883 2033 7.119846 GCATCAGTTTATGTTCTCCTGTTTAGT 59.880 37.037 0.00 0.00 0.00 2.24
1884 2034 7.119699 TGCATCAGTTTATGTTCTCCTGTTTAG 59.880 37.037 0.00 0.00 0.00 1.85
1885 2035 6.939730 TGCATCAGTTTATGTTCTCCTGTTTA 59.060 34.615 0.00 0.00 0.00 2.01
1888 2038 4.910195 TGCATCAGTTTATGTTCTCCTGT 58.090 39.130 0.00 0.00 0.00 4.00
1901 2051 5.357878 ACATTTTGTCGGATATGCATCAGTT 59.642 36.000 0.19 0.00 32.32 3.16
1903 2053 5.428496 ACATTTTGTCGGATATGCATCAG 57.572 39.130 0.19 0.00 32.32 2.90
1924 2074 4.622740 ACCGTGCGTAGTTTCAATAAGTAC 59.377 41.667 0.00 0.00 0.00 2.73
1939 2089 1.015607 GTAAAATCCGGACCGTGCGT 61.016 55.000 6.12 0.00 0.00 5.24
1955 2105 7.283354 TGTCATGGCATAATATCCGTTTTGTAA 59.717 33.333 0.00 0.00 0.00 2.41
1956 2106 6.768381 TGTCATGGCATAATATCCGTTTTGTA 59.232 34.615 0.00 0.00 0.00 2.41
1963 2113 5.724328 AGTAGTGTCATGGCATAATATCCG 58.276 41.667 1.89 0.00 0.00 4.18
1965 2115 6.752351 CCGTAGTAGTGTCATGGCATAATATC 59.248 42.308 1.89 0.00 0.00 1.63
1975 2125 1.669265 TCTCGCCGTAGTAGTGTCATG 59.331 52.381 0.00 0.00 0.00 3.07
1988 2138 0.029567 ACGCTTCTTCTATCTCGCCG 59.970 55.000 0.00 0.00 0.00 6.46
1991 2141 3.490155 TCGTCTACGCTTCTTCTATCTCG 59.510 47.826 0.00 0.00 39.60 4.04
2006 2156 8.508062 TGATCTTATCTAGCAAGAATCGTCTAC 58.492 37.037 9.75 0.00 35.73 2.59
2052 2203 6.567602 ACTTTTATCACAGGCTCTAATCCT 57.432 37.500 0.00 0.00 0.00 3.24
2060 2211 4.463186 ACTCTACGACTTTTATCACAGGCT 59.537 41.667 0.00 0.00 0.00 4.58
2073 2224 4.803098 ATTGGTAAAGCACTCTACGACT 57.197 40.909 0.00 0.00 0.00 4.18
2076 2227 4.250464 TGGAATTGGTAAAGCACTCTACG 58.750 43.478 0.00 0.00 0.00 3.51
2100 2252 8.678593 TGGTGTATGAATGTAGTGTAAAAACA 57.321 30.769 0.00 0.00 0.00 2.83
2166 2318 5.278463 GGTGTTATGGGCATGATGTAATGAC 60.278 44.000 0.00 0.00 34.56 3.06
2168 2320 4.583907 TGGTGTTATGGGCATGATGTAATG 59.416 41.667 0.00 0.00 0.00 1.90
2194 2346 4.643387 AAGGCGGTGAGTGGTGGC 62.643 66.667 0.00 0.00 0.00 5.01
2206 2358 2.489329 ACATGGAAGTGATTTCAAGGCG 59.511 45.455 0.00 0.00 37.54 5.52
2217 2369 1.818674 GCCCACCTTTACATGGAAGTG 59.181 52.381 3.55 3.55 38.34 3.16
2239 2411 6.725834 AGTTTTTAATTGAGGATGACCATGGT 59.274 34.615 19.89 19.89 38.94 3.55
2251 2423 7.529519 CGTGACGGTCTTAAGTTTTTAATTGAG 59.470 37.037 9.88 0.00 0.00 3.02
2292 2464 0.799534 GCAACTATACGTCGCGGTGT 60.800 55.000 6.13 7.93 0.00 4.16
2313 2485 5.876651 AGCAGACACAGTGATTCCATATA 57.123 39.130 7.81 0.00 0.00 0.86
2314 2486 4.767578 AGCAGACACAGTGATTCCATAT 57.232 40.909 7.81 0.00 0.00 1.78
2316 2488 4.558226 TTAGCAGACACAGTGATTCCAT 57.442 40.909 7.81 0.00 0.00 3.41
2322 2494 5.041287 GCGTATATTTAGCAGACACAGTGA 58.959 41.667 7.81 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.