Multiple sequence alignment - TraesCS4D01G355000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G355000 chr4D 100.000 6733 0 0 1 6733 504338642 504345374 0.000000e+00 12434.0
1 TraesCS4D01G355000 chr4D 100.000 1185 0 0 5549 6733 505190208 505189024 0.000000e+00 2189.0
2 TraesCS4D01G355000 chr4D 93.897 1147 44 8 3436 4563 505194100 505192961 0.000000e+00 1707.0
3 TraesCS4D01G355000 chr4D 94.124 936 31 6 4609 5538 505192967 505192050 0.000000e+00 1402.0
4 TraesCS4D01G355000 chr4D 94.772 899 32 8 2434 3319 505229183 505228287 0.000000e+00 1386.0
5 TraesCS4D01G355000 chr4D 89.961 767 45 21 5985 6733 504996197 504996949 0.000000e+00 961.0
6 TraesCS4D01G355000 chr4D 95.604 91 3 1 3309 3398 505194186 505194096 1.960000e-30 145.0
7 TraesCS4D01G355000 chr4D 95.385 65 3 0 5123 5187 504343828 504343764 3.320000e-18 104.0
8 TraesCS4D01G355000 chr4D 95.385 65 3 0 5123 5187 505192383 505192447 3.320000e-18 104.0
9 TraesCS4D01G355000 chr4B 93.738 1629 60 18 1101 2714 650971451 650973052 0.000000e+00 2405.0
10 TraesCS4D01G355000 chr4B 95.310 1258 44 5 2712 3963 650973095 650974343 0.000000e+00 1982.0
11 TraesCS4D01G355000 chr4B 94.000 1200 31 9 3960 5152 650974455 650975620 0.000000e+00 1779.0
12 TraesCS4D01G355000 chr4B 91.599 1238 39 11 5535 6733 651752179 651753390 0.000000e+00 1650.0
13 TraesCS4D01G355000 chr4B 91.980 985 32 10 5770 6733 651770719 651769761 0.000000e+00 1338.0
14 TraesCS4D01G355000 chr4B 89.980 978 26 24 5779 6733 651021554 651022482 0.000000e+00 1197.0
15 TraesCS4D01G355000 chr4B 94.201 707 22 13 4570 5262 651906938 651906237 0.000000e+00 1061.0
16 TraesCS4D01G355000 chr4B 98.176 603 11 0 5150 5752 650975647 650976249 0.000000e+00 1053.0
17 TraesCS4D01G355000 chr4B 96.000 250 6 2 3905 4154 651771005 651771250 2.920000e-108 403.0
18 TraesCS4D01G355000 chr4B 96.970 165 5 0 4218 4382 651908971 651908807 1.850000e-70 278.0
19 TraesCS4D01G355000 chr4B 94.479 163 3 4 4419 4578 651908806 651908647 5.220000e-61 246.0
20 TraesCS4D01G355000 chr4B 95.973 149 6 0 6581 6729 651768745 651768597 6.750000e-60 243.0
21 TraesCS4D01G355000 chr4B 81.034 232 15 11 721 952 650970983 650971185 2.510000e-34 158.0
22 TraesCS4D01G355000 chr4B 95.000 60 3 0 634 693 650970931 650970990 2.000000e-15 95.3
23 TraesCS4D01G355000 chr4B 87.179 78 8 2 5113 5189 622477340 622477264 3.340000e-13 87.9
24 TraesCS4D01G355000 chr4B 96.226 53 2 0 4163 4215 651913613 651913561 3.340000e-13 87.9
25 TraesCS4D01G355000 chr5A 96.264 1258 39 4 2712 3963 688985712 688986967 0.000000e+00 2056.0
26 TraesCS4D01G355000 chr5A 92.157 1377 60 15 1351 2714 688984328 688985669 0.000000e+00 1901.0
27 TraesCS4D01G355000 chr5A 95.165 1179 34 14 3960 5124 688987078 688988247 0.000000e+00 1840.0
28 TraesCS4D01G355000 chr5A 92.535 777 22 13 5963 6733 688989246 688989992 0.000000e+00 1081.0
29 TraesCS4D01G355000 chr5A 92.466 730 13 9 5186 5893 688988246 688988955 0.000000e+00 1005.0
30 TraesCS4D01G355000 chr5A 91.029 758 49 15 5985 6733 689298778 689299525 0.000000e+00 1005.0
31 TraesCS4D01G355000 chr5A 85.176 425 27 20 915 1317 688983923 688984333 2.920000e-108 403.0
32 TraesCS4D01G355000 chr5A 81.897 232 15 14 238 448 688983470 688983695 3.230000e-38 171.0
33 TraesCS4D01G355000 chr3A 94.293 368 12 4 4763 5124 691209978 691210342 7.630000e-154 555.0
34 TraesCS4D01G355000 chr3A 97.727 132 3 0 5186 5317 691210341 691210472 1.890000e-55 228.0
35 TraesCS4D01G355000 chr3A 96.296 135 5 0 5186 5320 628778944 628778810 8.790000e-54 222.0
36 TraesCS4D01G355000 chr3B 94.022 368 13 4 4763 5124 185527414 185527778 3.550000e-152 549.0
37 TraesCS4D01G355000 chr3B 97.727 132 3 0 5186 5317 185527777 185527908 1.890000e-55 228.0
38 TraesCS4D01G355000 chr7B 93.767 369 13 5 4763 5124 6963439 6963804 4.590000e-151 545.0
39 TraesCS4D01G355000 chr7B 98.485 132 2 0 5186 5317 6963803 6963934 4.060000e-57 233.0
40 TraesCS4D01G355000 chr7B 97.727 132 3 0 5186 5317 745076066 745076197 1.890000e-55 228.0
41 TraesCS4D01G355000 chr6A 93.750 368 13 5 4763 5124 245228702 245228339 1.650000e-150 544.0
42 TraesCS4D01G355000 chr6A 96.970 132 4 0 5186 5317 62872572 62872703 8.790000e-54 222.0
43 TraesCS4D01G355000 chr5B 93.750 368 14 4 4763 5124 23307065 23306701 1.650000e-150 544.0
44 TraesCS4D01G355000 chr4A 94.444 90 4 1 1995 2083 723510638 723510727 3.270000e-28 137.0
45 TraesCS4D01G355000 chr2A 94.203 69 2 2 5120 5187 73540727 73540660 3.320000e-18 104.0
46 TraesCS4D01G355000 chr2A 88.462 78 2 6 5112 5187 585135347 585135419 3.340000e-13 87.9
47 TraesCS4D01G355000 chr1D 87.838 74 3 4 5120 5187 309853996 309853923 1.560000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G355000 chr4D 504338642 504345374 6732 False 12434.000000 12434 100.000000 1 6733 1 chr4D.!!$F1 6732
1 TraesCS4D01G355000 chr4D 505228287 505229183 896 True 1386.000000 1386 94.772000 2434 3319 1 chr4D.!!$R2 885
2 TraesCS4D01G355000 chr4D 505189024 505194186 5162 True 1360.750000 2189 95.906250 3309 6733 4 chr4D.!!$R3 3424
3 TraesCS4D01G355000 chr4D 504996197 504996949 752 False 961.000000 961 89.961000 5985 6733 1 chr4D.!!$F2 748
4 TraesCS4D01G355000 chr4B 651752179 651753390 1211 False 1650.000000 1650 91.599000 5535 6733 1 chr4B.!!$F2 1198
5 TraesCS4D01G355000 chr4B 650970931 650976249 5318 False 1245.383333 2405 92.876333 634 5752 6 chr4B.!!$F4 5118
6 TraesCS4D01G355000 chr4B 651021554 651022482 928 False 1197.000000 1197 89.980000 5779 6733 1 chr4B.!!$F1 954
7 TraesCS4D01G355000 chr4B 651768597 651770719 2122 True 790.500000 1338 93.976500 5770 6733 2 chr4B.!!$R3 963
8 TraesCS4D01G355000 chr4B 651906237 651908971 2734 True 528.333333 1061 95.216667 4218 5262 3 chr4B.!!$R4 1044
9 TraesCS4D01G355000 chr5A 688983470 688989992 6522 False 1208.142857 2056 90.808571 238 6733 7 chr5A.!!$F2 6495
10 TraesCS4D01G355000 chr5A 689298778 689299525 747 False 1005.000000 1005 91.029000 5985 6733 1 chr5A.!!$F1 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 586 0.032130 CCACATCATACGACCCCGAG 59.968 60.000 0.0 0.0 39.50 4.63 F
836 863 0.035458 GCAGATGGATAAGGGGACGG 59.965 60.000 0.0 0.0 0.00 4.79 F
977 1032 0.249398 ATAACACCACACGCCTCCTC 59.751 55.000 0.0 0.0 0.00 3.71 F
1992 2209 0.480690 ATGCACCACCTTGGGTACAA 59.519 50.000 0.0 0.0 43.37 2.41 F
2757 3040 0.321653 AGGTTCACCGACTTGGATGC 60.322 55.000 0.0 0.0 42.00 3.91 F
3402 3687 1.131883 CAAGAGCAAAAGGATGAGCGG 59.868 52.381 0.0 0.0 0.00 5.52 F
4873 7043 1.004745 CCTGTACCAAAGCCCTCATGT 59.995 52.381 0.0 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2014 0.242017 GCTGAGTGGCATGTCAAACC 59.758 55.000 0.00 0.0 0.00 3.27 R
2139 2356 0.702902 TTCCTCCACCGAGTACTCCT 59.297 55.000 17.23 0.0 33.93 3.69 R
2299 2516 1.604604 TTCCTCCAAGGCAAACGAAG 58.395 50.000 0.00 0.0 34.61 3.79 R
3885 4186 0.610174 TTGGTCCTGCAGCTGACTAG 59.390 55.000 20.43 11.8 0.00 2.57 R
4197 4613 1.151810 AGGGTCAGCCTTTGGGAGA 60.152 57.895 0.00 0.0 34.45 3.71 R
5270 7475 0.381801 CCTGCGGGCACATACAAATC 59.618 55.000 0.00 0.0 0.00 2.17 R
5753 9835 0.445829 CAACGTCAGCAACACACACA 59.554 50.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.701664 CTCAACTGAATAAAAGGGGGCT 58.298 45.455 0.00 0.00 0.00 5.19
22 23 4.855340 CTCAACTGAATAAAAGGGGGCTA 58.145 43.478 0.00 0.00 0.00 3.93
23 24 4.595986 TCAACTGAATAAAAGGGGGCTAC 58.404 43.478 0.00 0.00 0.00 3.58
24 25 4.043561 TCAACTGAATAAAAGGGGGCTACA 59.956 41.667 0.00 0.00 0.00 2.74
25 26 4.668138 ACTGAATAAAAGGGGGCTACAA 57.332 40.909 0.00 0.00 0.00 2.41
26 27 4.600062 ACTGAATAAAAGGGGGCTACAAG 58.400 43.478 0.00 0.00 0.00 3.16
27 28 3.361786 TGAATAAAAGGGGGCTACAAGC 58.638 45.455 0.00 0.00 41.46 4.01
28 29 3.245443 TGAATAAAAGGGGGCTACAAGCA 60.245 43.478 0.78 0.00 44.75 3.91
29 30 2.982339 TAAAAGGGGGCTACAAGCAA 57.018 45.000 0.78 0.00 44.75 3.91
30 31 2.095604 AAAAGGGGGCTACAAGCAAA 57.904 45.000 0.78 0.00 44.75 3.68
31 32 1.632589 AAAGGGGGCTACAAGCAAAG 58.367 50.000 0.78 0.00 44.75 2.77
32 33 0.482887 AAGGGGGCTACAAGCAAAGT 59.517 50.000 0.78 0.00 44.75 2.66
33 34 0.251341 AGGGGGCTACAAGCAAAGTG 60.251 55.000 0.78 0.00 44.75 3.16
34 35 0.251165 GGGGGCTACAAGCAAAGTGA 60.251 55.000 0.78 0.00 44.75 3.41
35 36 1.168714 GGGGCTACAAGCAAAGTGAG 58.831 55.000 0.78 0.00 44.75 3.51
36 37 1.271379 GGGGCTACAAGCAAAGTGAGA 60.271 52.381 0.78 0.00 44.75 3.27
37 38 2.504367 GGGCTACAAGCAAAGTGAGAA 58.496 47.619 0.78 0.00 44.75 2.87
38 39 2.485814 GGGCTACAAGCAAAGTGAGAAG 59.514 50.000 0.78 0.00 44.75 2.85
39 40 3.403038 GGCTACAAGCAAAGTGAGAAGA 58.597 45.455 0.78 0.00 44.75 2.87
40 41 4.006319 GGCTACAAGCAAAGTGAGAAGAT 58.994 43.478 0.78 0.00 44.75 2.40
41 42 5.178797 GGCTACAAGCAAAGTGAGAAGATA 58.821 41.667 0.78 0.00 44.75 1.98
42 43 5.293079 GGCTACAAGCAAAGTGAGAAGATAG 59.707 44.000 0.78 0.00 44.75 2.08
43 44 5.872070 GCTACAAGCAAAGTGAGAAGATAGT 59.128 40.000 0.00 0.00 41.89 2.12
44 45 6.035542 GCTACAAGCAAAGTGAGAAGATAGTC 59.964 42.308 0.00 0.00 41.89 2.59
45 46 4.926238 ACAAGCAAAGTGAGAAGATAGTCG 59.074 41.667 0.00 0.00 0.00 4.18
46 47 4.116747 AGCAAAGTGAGAAGATAGTCGG 57.883 45.455 0.00 0.00 0.00 4.79
47 48 3.764434 AGCAAAGTGAGAAGATAGTCGGA 59.236 43.478 0.00 0.00 0.00 4.55
48 49 4.404073 AGCAAAGTGAGAAGATAGTCGGAT 59.596 41.667 0.00 0.00 0.00 4.18
49 50 4.505922 GCAAAGTGAGAAGATAGTCGGATG 59.494 45.833 0.00 0.00 0.00 3.51
50 51 4.927978 AAGTGAGAAGATAGTCGGATGG 57.072 45.455 0.00 0.00 0.00 3.51
51 52 4.171878 AGTGAGAAGATAGTCGGATGGA 57.828 45.455 0.00 0.00 0.00 3.41
52 53 4.141287 AGTGAGAAGATAGTCGGATGGAG 58.859 47.826 0.00 0.00 0.00 3.86
53 54 4.138290 GTGAGAAGATAGTCGGATGGAGA 58.862 47.826 0.00 0.00 0.00 3.71
54 55 4.215399 GTGAGAAGATAGTCGGATGGAGAG 59.785 50.000 0.00 0.00 0.00 3.20
55 56 4.103311 TGAGAAGATAGTCGGATGGAGAGA 59.897 45.833 0.00 0.00 0.00 3.10
56 57 4.394729 AGAAGATAGTCGGATGGAGAGAC 58.605 47.826 0.00 0.00 35.30 3.36
57 58 3.866703 AGATAGTCGGATGGAGAGACA 57.133 47.619 0.00 0.00 37.36 3.41
58 59 4.171878 AGATAGTCGGATGGAGAGACAA 57.828 45.455 0.00 0.00 37.36 3.18
59 60 4.537751 AGATAGTCGGATGGAGAGACAAA 58.462 43.478 0.00 0.00 37.36 2.83
60 61 4.339814 AGATAGTCGGATGGAGAGACAAAC 59.660 45.833 0.00 0.00 37.36 2.93
61 62 2.248248 AGTCGGATGGAGAGACAAACA 58.752 47.619 0.00 0.00 37.36 2.83
62 63 2.632996 AGTCGGATGGAGAGACAAACAA 59.367 45.455 0.00 0.00 37.36 2.83
63 64 2.996621 GTCGGATGGAGAGACAAACAAG 59.003 50.000 0.00 0.00 35.19 3.16
64 65 1.734465 CGGATGGAGAGACAAACAAGC 59.266 52.381 0.00 0.00 0.00 4.01
65 66 2.087646 GGATGGAGAGACAAACAAGCC 58.912 52.381 0.00 0.00 0.00 4.35
66 67 2.553028 GGATGGAGAGACAAACAAGCCA 60.553 50.000 0.00 0.00 0.00 4.75
67 68 2.957402 TGGAGAGACAAACAAGCCAT 57.043 45.000 0.00 0.00 0.00 4.40
68 69 2.507484 TGGAGAGACAAACAAGCCATG 58.493 47.619 0.00 0.00 0.00 3.66
69 70 2.158623 TGGAGAGACAAACAAGCCATGT 60.159 45.455 0.00 0.00 46.82 3.21
70 71 3.072330 TGGAGAGACAAACAAGCCATGTA 59.928 43.478 0.00 0.00 42.99 2.29
71 72 3.686726 GGAGAGACAAACAAGCCATGTAG 59.313 47.826 0.00 0.00 42.99 2.74
72 73 4.319177 GAGAGACAAACAAGCCATGTAGT 58.681 43.478 0.00 0.00 42.99 2.73
73 74 5.479306 GAGAGACAAACAAGCCATGTAGTA 58.521 41.667 0.00 0.00 42.99 1.82
74 75 5.238583 AGAGACAAACAAGCCATGTAGTAC 58.761 41.667 0.00 0.00 42.99 2.73
75 76 4.324267 AGACAAACAAGCCATGTAGTACC 58.676 43.478 0.00 0.00 42.99 3.34
76 77 4.041691 AGACAAACAAGCCATGTAGTACCT 59.958 41.667 0.00 0.00 42.99 3.08
77 78 4.072131 ACAAACAAGCCATGTAGTACCTG 58.928 43.478 0.00 0.00 42.99 4.00
78 79 3.350219 AACAAGCCATGTAGTACCTGG 57.650 47.619 17.70 17.70 42.99 4.45
79 80 1.559682 ACAAGCCATGTAGTACCTGGG 59.440 52.381 21.81 11.01 41.63 4.45
80 81 1.837439 CAAGCCATGTAGTACCTGGGA 59.163 52.381 21.81 0.00 34.88 4.37
81 82 2.238646 CAAGCCATGTAGTACCTGGGAA 59.761 50.000 21.81 0.00 34.88 3.97
82 83 2.119495 AGCCATGTAGTACCTGGGAAG 58.881 52.381 21.81 2.04 34.88 3.46
83 84 1.475213 GCCATGTAGTACCTGGGAAGC 60.475 57.143 21.81 7.51 34.88 3.86
84 85 1.837439 CCATGTAGTACCTGGGAAGCA 59.163 52.381 14.99 0.00 31.29 3.91
85 86 2.238646 CCATGTAGTACCTGGGAAGCAA 59.761 50.000 14.99 0.00 31.29 3.91
86 87 3.117888 CCATGTAGTACCTGGGAAGCAAT 60.118 47.826 14.99 0.00 31.29 3.56
87 88 3.627395 TGTAGTACCTGGGAAGCAATG 57.373 47.619 0.00 0.00 0.00 2.82
88 89 3.178046 TGTAGTACCTGGGAAGCAATGA 58.822 45.455 0.00 0.00 0.00 2.57
89 90 3.780294 TGTAGTACCTGGGAAGCAATGAT 59.220 43.478 0.00 0.00 0.00 2.45
90 91 4.227300 TGTAGTACCTGGGAAGCAATGATT 59.773 41.667 0.00 0.00 0.00 2.57
91 92 3.624777 AGTACCTGGGAAGCAATGATTG 58.375 45.455 0.00 0.00 0.00 2.67
92 93 2.610438 ACCTGGGAAGCAATGATTGT 57.390 45.000 7.05 0.00 0.00 2.71
93 94 2.893424 ACCTGGGAAGCAATGATTGTT 58.107 42.857 7.05 0.00 0.00 2.83
94 95 4.046286 ACCTGGGAAGCAATGATTGTTA 57.954 40.909 7.05 0.00 0.00 2.41
95 96 4.415596 ACCTGGGAAGCAATGATTGTTAA 58.584 39.130 7.05 0.00 0.00 2.01
96 97 4.837860 ACCTGGGAAGCAATGATTGTTAAA 59.162 37.500 7.05 0.00 0.00 1.52
97 98 5.047092 ACCTGGGAAGCAATGATTGTTAAAG 60.047 40.000 7.05 0.00 0.00 1.85
98 99 5.185635 CCTGGGAAGCAATGATTGTTAAAGA 59.814 40.000 7.05 0.00 0.00 2.52
99 100 6.127253 CCTGGGAAGCAATGATTGTTAAAGAT 60.127 38.462 7.05 0.00 0.00 2.40
100 101 7.243604 TGGGAAGCAATGATTGTTAAAGATT 57.756 32.000 7.05 0.00 0.00 2.40
101 102 7.678837 TGGGAAGCAATGATTGTTAAAGATTT 58.321 30.769 7.05 0.00 0.00 2.17
102 103 8.811017 TGGGAAGCAATGATTGTTAAAGATTTA 58.189 29.630 7.05 0.00 0.00 1.40
103 104 9.305925 GGGAAGCAATGATTGTTAAAGATTTAG 57.694 33.333 7.05 0.00 0.00 1.85
114 115 8.842358 TTGTTAAAGATTTAGAGTAGTGGTGG 57.158 34.615 0.00 0.00 0.00 4.61
115 116 7.970102 TGTTAAAGATTTAGAGTAGTGGTGGT 58.030 34.615 0.00 0.00 0.00 4.16
116 117 8.434392 TGTTAAAGATTTAGAGTAGTGGTGGTT 58.566 33.333 0.00 0.00 0.00 3.67
117 118 8.718734 GTTAAAGATTTAGAGTAGTGGTGGTTG 58.281 37.037 0.00 0.00 0.00 3.77
118 119 6.681729 AAGATTTAGAGTAGTGGTGGTTGA 57.318 37.500 0.00 0.00 0.00 3.18
119 120 6.681729 AGATTTAGAGTAGTGGTGGTTGAA 57.318 37.500 0.00 0.00 0.00 2.69
120 121 6.465084 AGATTTAGAGTAGTGGTGGTTGAAC 58.535 40.000 0.00 0.00 0.00 3.18
121 122 5.881923 TTTAGAGTAGTGGTGGTTGAACT 57.118 39.130 0.00 0.00 0.00 3.01
122 123 6.982160 TTTAGAGTAGTGGTGGTTGAACTA 57.018 37.500 0.00 0.00 0.00 2.24
123 124 7.549147 TTTAGAGTAGTGGTGGTTGAACTAT 57.451 36.000 0.00 0.00 0.00 2.12
124 125 5.407407 AGAGTAGTGGTGGTTGAACTATG 57.593 43.478 0.00 0.00 0.00 2.23
125 126 4.838986 AGAGTAGTGGTGGTTGAACTATGT 59.161 41.667 0.00 0.00 0.00 2.29
126 127 5.307196 AGAGTAGTGGTGGTTGAACTATGTT 59.693 40.000 0.00 0.00 0.00 2.71
127 128 5.305585 AGTAGTGGTGGTTGAACTATGTTG 58.694 41.667 0.00 0.00 0.00 3.33
128 129 4.431416 AGTGGTGGTTGAACTATGTTGA 57.569 40.909 0.00 0.00 0.00 3.18
129 130 4.985538 AGTGGTGGTTGAACTATGTTGAT 58.014 39.130 0.00 0.00 0.00 2.57
130 131 5.385198 AGTGGTGGTTGAACTATGTTGATT 58.615 37.500 0.00 0.00 0.00 2.57
131 132 5.473504 AGTGGTGGTTGAACTATGTTGATTC 59.526 40.000 0.00 0.00 0.00 2.52
132 133 5.240623 GTGGTGGTTGAACTATGTTGATTCA 59.759 40.000 0.00 0.00 0.00 2.57
133 134 5.473162 TGGTGGTTGAACTATGTTGATTCAG 59.527 40.000 0.00 0.00 34.04 3.02
134 135 5.393962 GTGGTTGAACTATGTTGATTCAGC 58.606 41.667 0.00 0.00 34.04 4.26
135 136 5.182001 GTGGTTGAACTATGTTGATTCAGCT 59.818 40.000 2.11 0.00 34.90 4.24
136 137 5.181811 TGGTTGAACTATGTTGATTCAGCTG 59.818 40.000 7.63 7.63 34.90 4.24
137 138 5.412594 GGTTGAACTATGTTGATTCAGCTGA 59.587 40.000 13.74 13.74 34.90 4.26
138 139 6.402983 GGTTGAACTATGTTGATTCAGCTGAG 60.403 42.308 17.43 4.37 34.90 3.35
139 140 5.798132 TGAACTATGTTGATTCAGCTGAGT 58.202 37.500 17.43 14.80 0.00 3.41
140 141 6.935167 TGAACTATGTTGATTCAGCTGAGTA 58.065 36.000 17.43 3.10 0.00 2.59
141 142 7.386059 TGAACTATGTTGATTCAGCTGAGTAA 58.614 34.615 17.43 3.98 0.00 2.24
142 143 7.331934 TGAACTATGTTGATTCAGCTGAGTAAC 59.668 37.037 17.43 20.70 0.00 2.50
143 144 6.109359 ACTATGTTGATTCAGCTGAGTAACC 58.891 40.000 24.55 9.83 0.00 2.85
144 145 3.674997 TGTTGATTCAGCTGAGTAACCC 58.325 45.455 24.55 11.21 0.00 4.11
145 146 3.072330 TGTTGATTCAGCTGAGTAACCCA 59.928 43.478 24.55 13.14 0.00 4.51
146 147 4.263462 TGTTGATTCAGCTGAGTAACCCAT 60.263 41.667 24.55 13.53 0.00 4.00
147 148 4.142609 TGATTCAGCTGAGTAACCCATC 57.857 45.455 17.43 14.89 0.00 3.51
148 149 3.519107 TGATTCAGCTGAGTAACCCATCA 59.481 43.478 17.43 17.24 0.00 3.07
149 150 4.164796 TGATTCAGCTGAGTAACCCATCAT 59.835 41.667 17.43 3.06 0.00 2.45
150 151 3.827008 TCAGCTGAGTAACCCATCATC 57.173 47.619 13.74 0.00 0.00 2.92
151 152 3.106827 TCAGCTGAGTAACCCATCATCA 58.893 45.455 13.74 0.00 0.00 3.07
152 153 3.118629 TCAGCTGAGTAACCCATCATCAC 60.119 47.826 13.74 0.00 0.00 3.06
153 154 2.840038 AGCTGAGTAACCCATCATCACA 59.160 45.455 0.00 0.00 0.00 3.58
154 155 3.118482 AGCTGAGTAACCCATCATCACAG 60.118 47.826 0.00 0.00 0.00 3.66
155 156 3.369892 GCTGAGTAACCCATCATCACAGT 60.370 47.826 0.00 0.00 0.00 3.55
156 157 4.836825 CTGAGTAACCCATCATCACAGTT 58.163 43.478 0.00 0.00 0.00 3.16
157 158 4.832248 TGAGTAACCCATCATCACAGTTC 58.168 43.478 0.00 0.00 0.00 3.01
158 159 4.285775 TGAGTAACCCATCATCACAGTTCA 59.714 41.667 0.00 0.00 0.00 3.18
159 160 4.579869 AGTAACCCATCATCACAGTTCAC 58.420 43.478 0.00 0.00 0.00 3.18
160 161 3.507162 AACCCATCATCACAGTTCACA 57.493 42.857 0.00 0.00 0.00 3.58
161 162 3.507162 ACCCATCATCACAGTTCACAA 57.493 42.857 0.00 0.00 0.00 3.33
162 163 3.149196 ACCCATCATCACAGTTCACAAC 58.851 45.455 0.00 0.00 0.00 3.32
163 164 3.148412 CCCATCATCACAGTTCACAACA 58.852 45.455 0.00 0.00 0.00 3.33
164 165 3.569277 CCCATCATCACAGTTCACAACAA 59.431 43.478 0.00 0.00 0.00 2.83
165 166 4.037803 CCCATCATCACAGTTCACAACAAA 59.962 41.667 0.00 0.00 0.00 2.83
166 167 5.217393 CCATCATCACAGTTCACAACAAAG 58.783 41.667 0.00 0.00 0.00 2.77
167 168 4.898829 TCATCACAGTTCACAACAAAGG 57.101 40.909 0.00 0.00 0.00 3.11
168 169 3.631686 TCATCACAGTTCACAACAAAGGG 59.368 43.478 0.00 0.00 0.00 3.95
169 170 3.080300 TCACAGTTCACAACAAAGGGT 57.920 42.857 0.00 0.00 0.00 4.34
170 171 2.752354 TCACAGTTCACAACAAAGGGTG 59.248 45.455 0.00 0.00 36.36 4.61
171 172 2.752354 CACAGTTCACAACAAAGGGTGA 59.248 45.455 0.00 0.00 41.93 4.02
172 173 3.381272 CACAGTTCACAACAAAGGGTGAT 59.619 43.478 0.00 0.00 43.01 3.06
173 174 4.578516 CACAGTTCACAACAAAGGGTGATA 59.421 41.667 0.00 0.00 43.01 2.15
174 175 4.821805 ACAGTTCACAACAAAGGGTGATAG 59.178 41.667 0.00 0.00 43.01 2.08
175 176 5.063204 CAGTTCACAACAAAGGGTGATAGA 58.937 41.667 0.00 0.00 43.01 1.98
176 177 5.049405 CAGTTCACAACAAAGGGTGATAGAC 60.049 44.000 0.00 0.00 43.01 2.59
177 178 4.974645 TCACAACAAAGGGTGATAGACT 57.025 40.909 0.00 0.00 39.00 3.24
178 179 4.641396 TCACAACAAAGGGTGATAGACTG 58.359 43.478 0.00 0.00 39.00 3.51
179 180 4.346709 TCACAACAAAGGGTGATAGACTGA 59.653 41.667 0.00 0.00 39.00 3.41
180 181 5.063204 CACAACAAAGGGTGATAGACTGAA 58.937 41.667 0.00 0.00 37.18 3.02
181 182 5.530915 CACAACAAAGGGTGATAGACTGAAA 59.469 40.000 0.00 0.00 37.18 2.69
182 183 6.207417 CACAACAAAGGGTGATAGACTGAAAT 59.793 38.462 0.00 0.00 37.18 2.17
183 184 6.777580 ACAACAAAGGGTGATAGACTGAAATT 59.222 34.615 0.00 0.00 0.00 1.82
184 185 7.942341 ACAACAAAGGGTGATAGACTGAAATTA 59.058 33.333 0.00 0.00 0.00 1.40
185 186 7.923414 ACAAAGGGTGATAGACTGAAATTAC 57.077 36.000 0.00 0.00 0.00 1.89
186 187 7.458397 ACAAAGGGTGATAGACTGAAATTACA 58.542 34.615 0.00 0.00 0.00 2.41
187 188 7.607991 ACAAAGGGTGATAGACTGAAATTACAG 59.392 37.037 0.00 0.00 42.78 2.74
188 189 6.240549 AGGGTGATAGACTGAAATTACAGG 57.759 41.667 0.00 0.00 41.59 4.00
189 190 5.131142 AGGGTGATAGACTGAAATTACAGGG 59.869 44.000 0.00 0.00 41.59 4.45
190 191 4.816925 GGTGATAGACTGAAATTACAGGGC 59.183 45.833 0.00 0.00 41.59 5.19
191 192 5.428253 GTGATAGACTGAAATTACAGGGCA 58.572 41.667 0.00 0.00 41.59 5.36
192 193 5.525378 GTGATAGACTGAAATTACAGGGCAG 59.475 44.000 0.00 0.00 41.59 4.85
193 194 3.356529 AGACTGAAATTACAGGGCAGG 57.643 47.619 0.00 0.00 41.59 4.85
194 195 1.745653 GACTGAAATTACAGGGCAGGC 59.254 52.381 0.00 0.00 41.59 4.85
195 196 1.106285 CTGAAATTACAGGGCAGGCC 58.894 55.000 4.33 4.33 34.64 5.19
196 197 0.679640 TGAAATTACAGGGCAGGCCG 60.680 55.000 7.51 5.33 36.85 6.13
197 198 1.379843 AAATTACAGGGCAGGCCGG 60.380 57.895 11.90 11.90 36.85 6.13
198 199 4.506255 ATTACAGGGCAGGCCGGC 62.506 66.667 21.18 21.18 36.85 6.13
211 212 2.361610 CCGGCAGGCCAACAATCT 60.362 61.111 5.01 0.00 35.37 2.40
212 213 1.077787 CCGGCAGGCCAACAATCTA 60.078 57.895 5.01 0.00 35.37 1.98
213 214 0.679640 CCGGCAGGCCAACAATCTAA 60.680 55.000 5.01 0.00 35.37 2.10
214 215 1.392589 CGGCAGGCCAACAATCTAAT 58.607 50.000 5.01 0.00 35.37 1.73
215 216 1.334869 CGGCAGGCCAACAATCTAATC 59.665 52.381 5.01 0.00 35.37 1.75
216 217 1.334869 GGCAGGCCAACAATCTAATCG 59.665 52.381 5.01 0.00 35.81 3.34
217 218 1.268743 GCAGGCCAACAATCTAATCGC 60.269 52.381 5.01 0.00 0.00 4.58
218 219 2.016318 CAGGCCAACAATCTAATCGCA 58.984 47.619 5.01 0.00 0.00 5.10
219 220 2.423185 CAGGCCAACAATCTAATCGCAA 59.577 45.455 5.01 0.00 0.00 4.85
220 221 3.067180 CAGGCCAACAATCTAATCGCAAT 59.933 43.478 5.01 0.00 0.00 3.56
221 222 3.316308 AGGCCAACAATCTAATCGCAATC 59.684 43.478 5.01 0.00 0.00 2.67
222 223 3.316308 GGCCAACAATCTAATCGCAATCT 59.684 43.478 0.00 0.00 0.00 2.40
223 224 4.285292 GCCAACAATCTAATCGCAATCTG 58.715 43.478 0.00 0.00 0.00 2.90
224 225 4.035558 GCCAACAATCTAATCGCAATCTGA 59.964 41.667 0.00 0.00 0.00 3.27
225 226 5.745514 CCAACAATCTAATCGCAATCTGAG 58.254 41.667 0.00 0.00 0.00 3.35
226 227 5.203370 CAACAATCTAATCGCAATCTGAGC 58.797 41.667 0.00 0.00 0.00 4.26
227 228 3.812053 ACAATCTAATCGCAATCTGAGCC 59.188 43.478 0.00 0.00 0.00 4.70
228 229 3.758755 ATCTAATCGCAATCTGAGCCA 57.241 42.857 0.00 0.00 0.00 4.75
229 230 3.541996 TCTAATCGCAATCTGAGCCAA 57.458 42.857 0.00 0.00 0.00 4.52
230 231 3.198068 TCTAATCGCAATCTGAGCCAAC 58.802 45.455 0.00 0.00 0.00 3.77
231 232 1.825090 AATCGCAATCTGAGCCAACA 58.175 45.000 0.00 0.00 0.00 3.33
232 233 2.048444 ATCGCAATCTGAGCCAACAT 57.952 45.000 0.00 0.00 0.00 2.71
233 234 2.689553 TCGCAATCTGAGCCAACATA 57.310 45.000 0.00 0.00 0.00 2.29
234 235 2.279741 TCGCAATCTGAGCCAACATAC 58.720 47.619 0.00 0.00 0.00 2.39
235 236 2.093500 TCGCAATCTGAGCCAACATACT 60.093 45.455 0.00 0.00 0.00 2.12
236 237 2.679837 CGCAATCTGAGCCAACATACTT 59.320 45.455 0.00 0.00 0.00 2.24
241 242 1.594862 CTGAGCCAACATACTTAGCGC 59.405 52.381 0.00 0.00 0.00 5.92
260 261 0.663688 CTCGTCTAGTCCATGGACCG 59.336 60.000 36.09 30.60 45.59 4.79
292 293 4.895668 AAATCAATGCTGAATTGGTGGT 57.104 36.364 8.48 0.00 45.00 4.16
314 315 5.582665 GGTGTACTGAACTGAATCATCCTTC 59.417 44.000 0.00 0.00 0.00 3.46
382 394 2.614983 CAGAGTAGTTAGAGGCGAGGAC 59.385 54.545 0.00 0.00 0.00 3.85
385 406 0.254178 TAGTTAGAGGCGAGGACGGT 59.746 55.000 0.00 0.00 40.15 4.83
394 415 1.507174 CGAGGACGGTCTCACCTTC 59.493 63.158 8.23 0.00 35.94 3.46
479 500 4.067512 TGAGCTCGGCCCTCTCCT 62.068 66.667 9.64 0.00 0.00 3.69
511 532 4.208686 CCGCCGTAGCACCTCCTC 62.209 72.222 0.00 0.00 39.83 3.71
512 533 4.208686 CGCCGTAGCACCTCCTCC 62.209 72.222 0.00 0.00 39.83 4.30
513 534 2.760385 GCCGTAGCACCTCCTCCT 60.760 66.667 0.00 0.00 39.53 3.69
514 535 2.787567 GCCGTAGCACCTCCTCCTC 61.788 68.421 0.00 0.00 39.53 3.71
515 536 2.128507 CCGTAGCACCTCCTCCTCC 61.129 68.421 0.00 0.00 0.00 4.30
516 537 1.076632 CGTAGCACCTCCTCCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
517 538 1.388065 CGTAGCACCTCCTCCTCCTG 61.388 65.000 0.00 0.00 0.00 3.86
518 539 1.381872 TAGCACCTCCTCCTCCTGC 60.382 63.158 0.00 0.00 0.00 4.85
519 540 2.168272 TAGCACCTCCTCCTCCTGCA 62.168 60.000 0.00 0.00 0.00 4.41
520 541 2.985456 CACCTCCTCCTCCTGCAC 59.015 66.667 0.00 0.00 0.00 4.57
521 542 2.284995 ACCTCCTCCTCCTGCACC 60.285 66.667 0.00 0.00 0.00 5.01
522 543 2.284921 CCTCCTCCTCCTGCACCA 60.285 66.667 0.00 0.00 0.00 4.17
523 544 1.692042 CCTCCTCCTCCTGCACCAT 60.692 63.158 0.00 0.00 0.00 3.55
524 545 1.694133 CCTCCTCCTCCTGCACCATC 61.694 65.000 0.00 0.00 0.00 3.51
525 546 0.690411 CTCCTCCTCCTGCACCATCT 60.690 60.000 0.00 0.00 0.00 2.90
526 547 0.689080 TCCTCCTCCTGCACCATCTC 60.689 60.000 0.00 0.00 0.00 2.75
527 548 1.694133 CCTCCTCCTGCACCATCTCC 61.694 65.000 0.00 0.00 0.00 3.71
528 549 0.690411 CTCCTCCTGCACCATCTCCT 60.690 60.000 0.00 0.00 0.00 3.69
529 550 0.979709 TCCTCCTGCACCATCTCCTG 60.980 60.000 0.00 0.00 0.00 3.86
530 551 1.153208 CTCCTGCACCATCTCCTGC 60.153 63.158 0.00 0.00 0.00 4.85
531 552 1.907222 CTCCTGCACCATCTCCTGCA 61.907 60.000 0.00 0.00 41.13 4.41
533 554 3.487211 TGCACCATCTCCTGCAGT 58.513 55.556 13.81 0.00 38.49 4.40
534 555 2.682631 TGCACCATCTCCTGCAGTA 58.317 52.632 13.81 0.00 38.49 2.74
535 556 0.250234 TGCACCATCTCCTGCAGTAC 59.750 55.000 13.81 0.00 38.49 2.73
536 557 0.462759 GCACCATCTCCTGCAGTACC 60.463 60.000 13.81 0.00 33.31 3.34
537 558 0.179000 CACCATCTCCTGCAGTACCC 59.821 60.000 13.81 0.00 0.00 3.69
538 559 0.252696 ACCATCTCCTGCAGTACCCA 60.253 55.000 13.81 0.00 0.00 4.51
539 560 0.179000 CCATCTCCTGCAGTACCCAC 59.821 60.000 13.81 0.00 0.00 4.61
540 561 0.179000 CATCTCCTGCAGTACCCACC 59.821 60.000 13.81 0.00 0.00 4.61
541 562 0.252696 ATCTCCTGCAGTACCCACCA 60.253 55.000 13.81 0.00 0.00 4.17
542 563 0.472925 TCTCCTGCAGTACCCACCAA 60.473 55.000 13.81 0.00 0.00 3.67
543 564 0.321653 CTCCTGCAGTACCCACCAAC 60.322 60.000 13.81 0.00 0.00 3.77
544 565 1.671054 CCTGCAGTACCCACCAACG 60.671 63.158 13.81 0.00 0.00 4.10
545 566 2.281208 TGCAGTACCCACCAACGC 60.281 61.111 0.00 0.00 0.00 4.84
546 567 3.053896 GCAGTACCCACCAACGCC 61.054 66.667 0.00 0.00 0.00 5.68
547 568 2.359478 CAGTACCCACCAACGCCC 60.359 66.667 0.00 0.00 0.00 6.13
548 569 2.850130 AGTACCCACCAACGCCCA 60.850 61.111 0.00 0.00 0.00 5.36
549 570 2.670592 GTACCCACCAACGCCCAC 60.671 66.667 0.00 0.00 0.00 4.61
550 571 3.169242 TACCCACCAACGCCCACA 61.169 61.111 0.00 0.00 0.00 4.17
551 572 2.530672 TACCCACCAACGCCCACAT 61.531 57.895 0.00 0.00 0.00 3.21
552 573 2.472414 TACCCACCAACGCCCACATC 62.472 60.000 0.00 0.00 0.00 3.06
553 574 2.282110 CCACCAACGCCCACATCA 60.282 61.111 0.00 0.00 0.00 3.07
554 575 1.678635 CCACCAACGCCCACATCAT 60.679 57.895 0.00 0.00 0.00 2.45
555 576 0.393673 CCACCAACGCCCACATCATA 60.394 55.000 0.00 0.00 0.00 2.15
556 577 0.732571 CACCAACGCCCACATCATAC 59.267 55.000 0.00 0.00 0.00 2.39
557 578 0.742990 ACCAACGCCCACATCATACG 60.743 55.000 0.00 0.00 0.00 3.06
558 579 0.461163 CCAACGCCCACATCATACGA 60.461 55.000 0.00 0.00 0.00 3.43
559 580 0.650512 CAACGCCCACATCATACGAC 59.349 55.000 0.00 0.00 0.00 4.34
560 581 0.461339 AACGCCCACATCATACGACC 60.461 55.000 0.00 0.00 0.00 4.79
561 582 1.594293 CGCCCACATCATACGACCC 60.594 63.158 0.00 0.00 0.00 4.46
562 583 1.227853 GCCCACATCATACGACCCC 60.228 63.158 0.00 0.00 0.00 4.95
563 584 1.069090 CCCACATCATACGACCCCG 59.931 63.158 0.00 0.00 42.50 5.73
564 585 1.396607 CCCACATCATACGACCCCGA 61.397 60.000 0.00 0.00 39.50 5.14
565 586 0.032130 CCACATCATACGACCCCGAG 59.968 60.000 0.00 0.00 39.50 4.63
566 587 0.597637 CACATCATACGACCCCGAGC 60.598 60.000 0.00 0.00 39.50 5.03
567 588 1.371758 CATCATACGACCCCGAGCG 60.372 63.158 0.00 0.00 39.50 5.03
568 589 3.208884 ATCATACGACCCCGAGCGC 62.209 63.158 0.00 0.00 39.50 5.92
579 600 4.796231 CGAGCGCGCAGGGTTACT 62.796 66.667 35.10 9.89 44.71 2.24
580 601 2.886124 GAGCGCGCAGGGTTACTC 60.886 66.667 35.10 15.70 44.71 2.59
581 602 3.642778 GAGCGCGCAGGGTTACTCA 62.643 63.158 35.10 0.00 44.71 3.41
582 603 3.488090 GCGCGCAGGGTTACTCAC 61.488 66.667 29.10 0.00 44.71 3.51
583 604 3.179265 CGCGCAGGGTTACTCACG 61.179 66.667 8.75 0.00 34.98 4.35
584 605 2.813908 GCGCAGGGTTACTCACGG 60.814 66.667 0.30 0.00 0.00 4.94
585 606 2.813908 CGCAGGGTTACTCACGGC 60.814 66.667 0.00 0.00 37.30 5.68
586 607 2.813908 GCAGGGTTACTCACGGCG 60.814 66.667 4.80 4.80 30.27 6.46
587 608 2.125673 CAGGGTTACTCACGGCGG 60.126 66.667 13.24 0.00 0.00 6.13
588 609 3.387947 AGGGTTACTCACGGCGGG 61.388 66.667 13.24 7.61 0.00 6.13
591 612 4.382320 GTTACTCACGGCGGGCCA 62.382 66.667 13.24 0.00 35.37 5.36
592 613 4.077184 TTACTCACGGCGGGCCAG 62.077 66.667 13.24 0.00 35.37 4.85
613 634 3.432186 GGGAGCTCGCTCTCTCTC 58.568 66.667 22.62 0.00 40.28 3.20
614 635 1.152963 GGGAGCTCGCTCTCTCTCT 60.153 63.158 22.62 0.00 40.28 3.10
615 636 1.166531 GGGAGCTCGCTCTCTCTCTC 61.167 65.000 22.62 0.00 40.28 3.20
616 637 0.179045 GGAGCTCGCTCTCTCTCTCT 60.179 60.000 17.48 0.00 42.38 3.10
617 638 1.221414 GAGCTCGCTCTCTCTCTCTC 58.779 60.000 11.49 0.00 39.80 3.20
618 639 0.833287 AGCTCGCTCTCTCTCTCTCT 59.167 55.000 0.00 0.00 0.00 3.10
619 640 1.202580 AGCTCGCTCTCTCTCTCTCTC 60.203 57.143 0.00 0.00 0.00 3.20
620 641 1.202580 GCTCGCTCTCTCTCTCTCTCT 60.203 57.143 0.00 0.00 0.00 3.10
621 642 2.748605 CTCGCTCTCTCTCTCTCTCTC 58.251 57.143 0.00 0.00 0.00 3.20
622 643 2.363680 CTCGCTCTCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
623 644 2.362397 TCGCTCTCTCTCTCTCTCTCTC 59.638 54.545 0.00 0.00 0.00 3.20
624 645 2.363680 CGCTCTCTCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
625 646 3.551863 CGCTCTCTCTCTCTCTCTCTCTC 60.552 56.522 0.00 0.00 0.00 3.20
626 647 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
627 648 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
628 649 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
629 650 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
630 651 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
631 652 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
632 653 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
636 657 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
646 667 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
715 736 3.905678 CCTCCGCGCTCGATCCTT 61.906 66.667 5.56 0.00 38.10 3.36
716 737 2.552819 CCTCCGCGCTCGATCCTTA 61.553 63.158 5.56 0.00 38.10 2.69
717 738 1.359117 CTCCGCGCTCGATCCTTAA 59.641 57.895 5.56 0.00 38.10 1.85
718 739 0.248907 CTCCGCGCTCGATCCTTAAA 60.249 55.000 5.56 0.00 38.10 1.52
719 740 0.173935 TCCGCGCTCGATCCTTAAAA 59.826 50.000 5.56 0.00 38.10 1.52
720 741 0.300789 CCGCGCTCGATCCTTAAAAC 59.699 55.000 5.56 0.00 38.10 2.43
721 742 0.044161 CGCGCTCGATCCTTAAAACG 60.044 55.000 5.56 0.00 38.10 3.60
722 743 0.300789 GCGCTCGATCCTTAAAACGG 59.699 55.000 0.00 0.00 0.00 4.44
723 744 0.300789 CGCTCGATCCTTAAAACGGC 59.699 55.000 0.00 0.00 0.00 5.68
724 745 0.300789 GCTCGATCCTTAAAACGGCG 59.699 55.000 4.80 4.80 0.00 6.46
725 746 0.928229 CTCGATCCTTAAAACGGCGG 59.072 55.000 13.24 0.00 0.00 6.13
726 747 1.085501 TCGATCCTTAAAACGGCGGC 61.086 55.000 13.24 0.00 0.00 6.53
727 748 1.725665 GATCCTTAAAACGGCGGCC 59.274 57.895 13.24 9.54 0.00 6.13
728 749 1.721664 GATCCTTAAAACGGCGGCCC 61.722 60.000 14.55 0.00 0.00 5.80
832 859 0.322975 CGAGGCAGATGGATAAGGGG 59.677 60.000 0.00 0.00 0.00 4.79
833 860 1.734655 GAGGCAGATGGATAAGGGGA 58.265 55.000 0.00 0.00 0.00 4.81
834 861 1.349357 GAGGCAGATGGATAAGGGGAC 59.651 57.143 0.00 0.00 0.00 4.46
836 863 0.035458 GCAGATGGATAAGGGGACGG 59.965 60.000 0.00 0.00 0.00 4.79
840 867 3.567209 GGATAAGGGGACGGGGGC 61.567 72.222 0.00 0.00 0.00 5.80
841 868 2.447959 GATAAGGGGACGGGGGCT 60.448 66.667 0.00 0.00 0.00 5.19
900 927 1.024579 TTCCTCCGCTCGCCATTTTC 61.025 55.000 0.00 0.00 0.00 2.29
907 934 2.045731 TCGCCATTTTCCGTCCCC 60.046 61.111 0.00 0.00 0.00 4.81
908 935 2.360600 CGCCATTTTCCGTCCCCA 60.361 61.111 0.00 0.00 0.00 4.96
910 937 1.319614 CGCCATTTTCCGTCCCCATT 61.320 55.000 0.00 0.00 0.00 3.16
912 939 0.738389 CCATTTTCCGTCCCCATTCG 59.262 55.000 0.00 0.00 0.00 3.34
977 1032 0.249398 ATAACACCACACGCCTCCTC 59.751 55.000 0.00 0.00 0.00 3.71
978 1033 1.823169 TAACACCACACGCCTCCTCC 61.823 60.000 0.00 0.00 0.00 4.30
979 1034 4.394712 CACCACACGCCTCCTCCC 62.395 72.222 0.00 0.00 0.00 4.30
984 1039 4.787280 CACGCCTCCTCCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
1131 1303 4.390556 AGCCGCTCCAGTCCTCCT 62.391 66.667 0.00 0.00 0.00 3.69
1137 1309 2.750637 TCCAGTCCTCCTCGCGTC 60.751 66.667 5.77 0.00 0.00 5.19
1139 1311 3.827898 CAGTCCTCCTCGCGTCCC 61.828 72.222 5.77 0.00 0.00 4.46
1140 1312 4.049817 AGTCCTCCTCGCGTCCCT 62.050 66.667 5.77 0.00 0.00 4.20
1342 1531 3.823330 CTCGCGCCGTCTAGGGTT 61.823 66.667 0.00 0.00 41.48 4.11
1343 1532 3.753070 CTCGCGCCGTCTAGGGTTC 62.753 68.421 0.00 0.00 41.48 3.62
1345 1534 4.867599 GCGCCGTCTAGGGTTCGG 62.868 72.222 0.00 10.51 45.94 4.30
1432 1621 2.527442 CGCAGGGACGAATTTCTTTC 57.473 50.000 0.00 0.00 34.06 2.62
1433 1622 2.076863 CGCAGGGACGAATTTCTTTCT 58.923 47.619 0.00 0.00 34.06 2.52
1454 1644 7.672983 TTCTGTTGATTTGATTAGGAGTGAC 57.327 36.000 0.00 0.00 0.00 3.67
1492 1682 2.124193 CCCATTGCTGGATGCCGA 60.124 61.111 0.00 0.00 46.37 5.54
1528 1718 2.762535 TTCCTTCCCATTGACGTCTC 57.237 50.000 17.92 0.00 0.00 3.36
1578 1769 2.401583 TTCCAATCTGTCCATCACCG 57.598 50.000 0.00 0.00 0.00 4.94
1633 1825 1.292061 CTGATTGCTCTCTCTGCTGC 58.708 55.000 0.00 0.00 0.00 5.25
1644 1836 1.959899 CTCTGCTGCGTAGTTTGCCG 61.960 60.000 1.53 0.00 0.00 5.69
1670 1862 5.820131 TCATATTTCTGTTGCTTATTGCCG 58.180 37.500 0.00 0.00 42.00 5.69
1723 1917 4.097589 AGAGTAAGGCGCGTACTAGATTTT 59.902 41.667 18.99 0.00 31.88 1.82
1760 1956 6.533730 CCACTGCTCTTTGGTCCATATAATA 58.466 40.000 0.00 0.00 0.00 0.98
1761 1957 6.428159 CCACTGCTCTTTGGTCCATATAATAC 59.572 42.308 0.00 0.00 0.00 1.89
1762 1958 7.220030 CACTGCTCTTTGGTCCATATAATACT 58.780 38.462 0.00 0.00 0.00 2.12
1763 1959 7.386299 CACTGCTCTTTGGTCCATATAATACTC 59.614 40.741 0.00 0.00 0.00 2.59
1818 2014 3.681897 GTGGCTACAGATGAGTTTGTCAG 59.318 47.826 0.00 0.00 39.07 3.51
1881 2079 6.375736 TCCATTTCGTTGGAATTGTATGCTTA 59.624 34.615 2.69 0.00 42.82 3.09
1902 2100 6.036517 GCTTATATAGTTATGCTGCGCAGAAT 59.963 38.462 40.21 36.31 41.70 2.40
1935 2133 1.474077 CCCAGCAGTACATTTTCAGGC 59.526 52.381 0.00 0.00 0.00 4.85
1954 2152 2.543641 GCACAGCAGCTTGTTTCTTTT 58.456 42.857 0.00 0.00 0.00 2.27
1986 2203 4.533919 TTTTGATTATGCACCACCTTGG 57.466 40.909 0.00 0.00 45.02 3.61
1987 2204 2.142356 TGATTATGCACCACCTTGGG 57.858 50.000 0.00 0.00 43.37 4.12
1988 2205 1.357420 TGATTATGCACCACCTTGGGT 59.643 47.619 0.00 0.00 43.37 4.51
1989 2206 2.578480 TGATTATGCACCACCTTGGGTA 59.422 45.455 0.00 0.00 43.37 3.69
1990 2207 2.500392 TTATGCACCACCTTGGGTAC 57.500 50.000 0.00 0.00 43.37 3.34
1991 2208 1.363246 TATGCACCACCTTGGGTACA 58.637 50.000 0.00 0.00 43.37 2.90
1992 2209 0.480690 ATGCACCACCTTGGGTACAA 59.519 50.000 0.00 0.00 43.37 2.41
2004 2221 3.644966 TGGGTACAAGGGCTTTAGATG 57.355 47.619 0.00 0.00 0.00 2.90
2090 2307 5.757320 AGTTCATTGTCTGTTCAGAAGAGTG 59.243 40.000 7.18 0.00 0.00 3.51
2127 2344 7.867403 ACCTGAATTTTGTATTTGCACAGTTAG 59.133 33.333 0.00 0.00 0.00 2.34
2139 2356 2.710377 CACAGTTAGTTGCTGGCCATA 58.290 47.619 5.51 0.00 38.22 2.74
2200 2417 5.063180 TGTAAATTTTCTGCTGCATCCAG 57.937 39.130 1.31 7.92 42.13 3.86
2203 2420 4.612264 AATTTTCTGCTGCATCCAGTTT 57.388 36.364 1.31 0.00 41.26 2.66
2299 2516 6.127479 TGACCCATGCATTTATAAGTTTGGAC 60.127 38.462 0.00 0.00 0.00 4.02
2313 2530 1.028905 TTGGACTTCGTTTGCCTTGG 58.971 50.000 0.00 0.00 0.00 3.61
2624 2842 6.154363 TGGCCTCTCCATTTTACCTTATTTTG 59.846 38.462 3.32 0.00 40.72 2.44
2658 2883 0.394216 TTGCATCTTCGACCCATGGG 60.394 55.000 30.23 30.23 42.03 4.00
2757 3040 0.321653 AGGTTCACCGACTTGGATGC 60.322 55.000 0.00 0.00 42.00 3.91
2771 3054 4.878397 ACTTGGATGCTGTATTCTGTTAGC 59.122 41.667 0.00 0.00 36.72 3.09
3271 3555 9.971922 GATAGATTTAACCTATTTTGCATGCTT 57.028 29.630 20.33 4.47 0.00 3.91
3312 3596 6.545508 TGTGCAATGATGTTTATCTCTTTCG 58.454 36.000 0.00 0.00 34.31 3.46
3402 3687 1.131883 CAAGAGCAAAAGGATGAGCGG 59.868 52.381 0.00 0.00 0.00 5.52
3470 3765 3.906720 ACTGCACCGAGTTATATTGGT 57.093 42.857 0.00 0.00 37.45 3.67
3476 3771 7.817962 ACTGCACCGAGTTATATTGGTTATATC 59.182 37.037 0.00 0.00 34.49 1.63
3617 3912 5.609533 TCCCTGCCAGTTAGTAGTAATTC 57.390 43.478 0.00 0.00 0.00 2.17
3639 3934 3.410631 TCATTTGGTCGGTCAGCTTTA 57.589 42.857 0.00 0.00 0.00 1.85
3640 3935 3.745799 TCATTTGGTCGGTCAGCTTTAA 58.254 40.909 0.00 0.00 0.00 1.52
3670 3965 6.456988 GCTCCCATATTTCAGTAACTCGTTTG 60.457 42.308 0.00 0.00 0.00 2.93
3697 3996 5.646360 CACTGGGTCTTACGGATTTTATGTT 59.354 40.000 0.00 0.00 0.00 2.71
3708 4007 6.620678 ACGGATTTTATGTTTGACTGGAATG 58.379 36.000 0.00 0.00 0.00 2.67
3788 4087 4.382362 GGTGTGGATACCTTGGTACTGTAC 60.382 50.000 9.46 9.46 37.74 2.90
3817 4118 2.988010 TTATCTGTGATTCGCTGCCT 57.012 45.000 0.00 0.00 0.00 4.75
3822 4123 2.099263 TCTGTGATTCGCTGCCTAGTAC 59.901 50.000 0.00 0.00 0.00 2.73
3885 4186 5.394333 GGGAGTAGTGTGATGGTTCTAAGAC 60.394 48.000 0.00 0.00 0.00 3.01
3995 4411 6.348868 GCTCCCTTGTGATTTTCTTCTGTTAG 60.349 42.308 0.00 0.00 0.00 2.34
4317 4733 7.303182 TCTTTCTATCTGTTGAGTTCAGGAA 57.697 36.000 0.00 0.00 34.15 3.36
4347 4763 1.378382 TGCGGTACCATGCAATGCT 60.378 52.632 13.54 0.00 44.97 3.79
4551 4971 8.902540 TTCTGATTTTGTACTAGTTGACACAT 57.097 30.769 0.00 0.00 0.00 3.21
4658 6795 6.603940 TTTCCTGAAATAATGAACCCCTTG 57.396 37.500 0.00 0.00 0.00 3.61
4873 7043 1.004745 CCTGTACCAAAGCCCTCATGT 59.995 52.381 0.00 0.00 0.00 3.21
4883 7053 5.105228 CCAAAGCCCTCATGTGAATTAATGT 60.105 40.000 0.00 0.00 0.00 2.71
5068 7244 9.774413 ATATAGAATAGTTGAAACGGGTAAAGG 57.226 33.333 0.00 0.00 0.00 3.11
5270 7475 2.093181 TCCATAACCGGGTCAAGTGATG 60.093 50.000 6.32 0.00 0.00 3.07
5311 7538 2.557924 GTTCAATCACAGGTGAATGCCA 59.442 45.455 11.66 0.22 43.58 4.92
5752 9834 3.583806 ACCAAAAATGTGTGTGTGTGTG 58.416 40.909 0.00 0.00 0.00 3.82
5753 9835 3.006323 ACCAAAAATGTGTGTGTGTGTGT 59.994 39.130 0.00 0.00 0.00 3.72
5754 9836 3.367327 CCAAAAATGTGTGTGTGTGTGTG 59.633 43.478 0.00 0.00 0.00 3.82
5755 9837 3.932545 AAAATGTGTGTGTGTGTGTGT 57.067 38.095 0.00 0.00 0.00 3.72
5756 9838 2.917701 AATGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
5757 9839 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.701664 AGCCCCCTTTTATTCAGTTGAG 58.298 45.455 0.00 0.00 0.00 3.02
1 2 3.825908 AGCCCCCTTTTATTCAGTTGA 57.174 42.857 0.00 0.00 0.00 3.18
2 3 4.340617 TGTAGCCCCCTTTTATTCAGTTG 58.659 43.478 0.00 0.00 0.00 3.16
3 4 4.668138 TGTAGCCCCCTTTTATTCAGTT 57.332 40.909 0.00 0.00 0.00 3.16
4 5 4.600062 CTTGTAGCCCCCTTTTATTCAGT 58.400 43.478 0.00 0.00 0.00 3.41
5 6 3.381590 GCTTGTAGCCCCCTTTTATTCAG 59.618 47.826 0.00 0.00 34.48 3.02
6 7 3.245443 TGCTTGTAGCCCCCTTTTATTCA 60.245 43.478 0.00 0.00 41.51 2.57
7 8 3.361786 TGCTTGTAGCCCCCTTTTATTC 58.638 45.455 0.00 0.00 41.51 1.75
8 9 3.466395 TGCTTGTAGCCCCCTTTTATT 57.534 42.857 0.00 0.00 41.51 1.40
9 10 3.466395 TTGCTTGTAGCCCCCTTTTAT 57.534 42.857 0.00 0.00 41.51 1.40
10 11 2.982339 TTGCTTGTAGCCCCCTTTTA 57.018 45.000 0.00 0.00 41.51 1.52
11 12 1.970640 CTTTGCTTGTAGCCCCCTTTT 59.029 47.619 0.00 0.00 41.51 2.27
12 13 1.133167 ACTTTGCTTGTAGCCCCCTTT 60.133 47.619 0.00 0.00 41.51 3.11
13 14 0.482887 ACTTTGCTTGTAGCCCCCTT 59.517 50.000 0.00 0.00 41.51 3.95
14 15 0.251341 CACTTTGCTTGTAGCCCCCT 60.251 55.000 0.00 0.00 41.51 4.79
15 16 0.251165 TCACTTTGCTTGTAGCCCCC 60.251 55.000 0.00 0.00 41.51 5.40
16 17 1.168714 CTCACTTTGCTTGTAGCCCC 58.831 55.000 0.00 0.00 41.51 5.80
17 18 2.185004 TCTCACTTTGCTTGTAGCCC 57.815 50.000 0.00 0.00 41.51 5.19
18 19 3.403038 TCTTCTCACTTTGCTTGTAGCC 58.597 45.455 0.00 0.00 41.51 3.93
19 20 5.872070 ACTATCTTCTCACTTTGCTTGTAGC 59.128 40.000 0.00 0.00 42.82 3.58
20 21 6.252441 CGACTATCTTCTCACTTTGCTTGTAG 59.748 42.308 0.00 0.00 0.00 2.74
21 22 6.093404 CGACTATCTTCTCACTTTGCTTGTA 58.907 40.000 0.00 0.00 0.00 2.41
22 23 4.926238 CGACTATCTTCTCACTTTGCTTGT 59.074 41.667 0.00 0.00 0.00 3.16
23 24 4.328440 CCGACTATCTTCTCACTTTGCTTG 59.672 45.833 0.00 0.00 0.00 4.01
24 25 4.220821 TCCGACTATCTTCTCACTTTGCTT 59.779 41.667 0.00 0.00 0.00 3.91
25 26 3.764434 TCCGACTATCTTCTCACTTTGCT 59.236 43.478 0.00 0.00 0.00 3.91
26 27 4.111375 TCCGACTATCTTCTCACTTTGC 57.889 45.455 0.00 0.00 0.00 3.68
27 28 5.046529 CCATCCGACTATCTTCTCACTTTG 58.953 45.833 0.00 0.00 0.00 2.77
28 29 4.956700 TCCATCCGACTATCTTCTCACTTT 59.043 41.667 0.00 0.00 0.00 2.66
29 30 4.537751 TCCATCCGACTATCTTCTCACTT 58.462 43.478 0.00 0.00 0.00 3.16
30 31 4.141287 CTCCATCCGACTATCTTCTCACT 58.859 47.826 0.00 0.00 0.00 3.41
31 32 4.138290 TCTCCATCCGACTATCTTCTCAC 58.862 47.826 0.00 0.00 0.00 3.51
32 33 4.103311 TCTCTCCATCCGACTATCTTCTCA 59.897 45.833 0.00 0.00 0.00 3.27
33 34 4.454504 GTCTCTCCATCCGACTATCTTCTC 59.545 50.000 0.00 0.00 0.00 2.87
34 35 4.141367 TGTCTCTCCATCCGACTATCTTCT 60.141 45.833 0.00 0.00 0.00 2.85
35 36 4.138290 TGTCTCTCCATCCGACTATCTTC 58.862 47.826 0.00 0.00 0.00 2.87
36 37 4.171878 TGTCTCTCCATCCGACTATCTT 57.828 45.455 0.00 0.00 0.00 2.40
37 38 3.866703 TGTCTCTCCATCCGACTATCT 57.133 47.619 0.00 0.00 0.00 1.98
38 39 4.098044 TGTTTGTCTCTCCATCCGACTATC 59.902 45.833 0.00 0.00 0.00 2.08
39 40 4.023980 TGTTTGTCTCTCCATCCGACTAT 58.976 43.478 0.00 0.00 0.00 2.12
40 41 3.427573 TGTTTGTCTCTCCATCCGACTA 58.572 45.455 0.00 0.00 0.00 2.59
41 42 2.248248 TGTTTGTCTCTCCATCCGACT 58.752 47.619 0.00 0.00 0.00 4.18
42 43 2.743636 TGTTTGTCTCTCCATCCGAC 57.256 50.000 0.00 0.00 0.00 4.79
43 44 2.612972 GCTTGTTTGTCTCTCCATCCGA 60.613 50.000 0.00 0.00 0.00 4.55
44 45 1.734465 GCTTGTTTGTCTCTCCATCCG 59.266 52.381 0.00 0.00 0.00 4.18
45 46 2.087646 GGCTTGTTTGTCTCTCCATCC 58.912 52.381 0.00 0.00 0.00 3.51
46 47 2.783135 TGGCTTGTTTGTCTCTCCATC 58.217 47.619 0.00 0.00 0.00 3.51
47 48 2.957402 TGGCTTGTTTGTCTCTCCAT 57.043 45.000 0.00 0.00 0.00 3.41
48 49 2.158623 ACATGGCTTGTTTGTCTCTCCA 60.159 45.455 0.00 0.00 33.74 3.86
49 50 2.508526 ACATGGCTTGTTTGTCTCTCC 58.491 47.619 0.00 0.00 33.74 3.71
50 51 4.319177 ACTACATGGCTTGTTTGTCTCTC 58.681 43.478 11.53 0.00 39.87 3.20
51 52 4.357918 ACTACATGGCTTGTTTGTCTCT 57.642 40.909 11.53 0.00 39.87 3.10
52 53 4.392138 GGTACTACATGGCTTGTTTGTCTC 59.608 45.833 11.53 8.03 39.87 3.36
53 54 4.041691 AGGTACTACATGGCTTGTTTGTCT 59.958 41.667 11.53 3.83 39.87 3.41
54 55 4.154195 CAGGTACTACATGGCTTGTTTGTC 59.846 45.833 11.53 6.03 39.87 3.18
55 56 4.072131 CAGGTACTACATGGCTTGTTTGT 58.928 43.478 11.53 12.63 39.87 2.83
56 57 3.440173 CCAGGTACTACATGGCTTGTTTG 59.560 47.826 11.53 7.79 43.49 2.93
57 58 3.686016 CCAGGTACTACATGGCTTGTTT 58.314 45.455 11.53 2.38 43.49 2.83
58 59 3.350219 CCAGGTACTACATGGCTTGTT 57.650 47.619 11.53 0.00 43.49 2.83
65 66 3.627395 TTGCTTCCCAGGTACTACATG 57.373 47.619 0.00 0.00 36.02 3.21
66 67 3.780294 TCATTGCTTCCCAGGTACTACAT 59.220 43.478 0.00 0.00 36.02 2.29
67 68 3.178046 TCATTGCTTCCCAGGTACTACA 58.822 45.455 0.00 0.00 36.02 2.74
68 69 3.906720 TCATTGCTTCCCAGGTACTAC 57.093 47.619 0.00 0.00 36.02 2.73
69 70 4.227300 ACAATCATTGCTTCCCAGGTACTA 59.773 41.667 0.00 0.00 36.02 1.82
70 71 3.010584 ACAATCATTGCTTCCCAGGTACT 59.989 43.478 0.00 0.00 43.88 2.73
71 72 3.356290 ACAATCATTGCTTCCCAGGTAC 58.644 45.455 0.00 0.00 0.00 3.34
72 73 3.737559 ACAATCATTGCTTCCCAGGTA 57.262 42.857 0.00 0.00 0.00 3.08
73 74 2.610438 ACAATCATTGCTTCCCAGGT 57.390 45.000 0.00 0.00 0.00 4.00
74 75 5.185635 TCTTTAACAATCATTGCTTCCCAGG 59.814 40.000 0.00 0.00 0.00 4.45
75 76 6.271488 TCTTTAACAATCATTGCTTCCCAG 57.729 37.500 0.00 0.00 0.00 4.45
76 77 6.855763 ATCTTTAACAATCATTGCTTCCCA 57.144 33.333 0.00 0.00 0.00 4.37
77 78 9.305925 CTAAATCTTTAACAATCATTGCTTCCC 57.694 33.333 0.00 0.00 0.00 3.97
88 89 9.449719 CCACCACTACTCTAAATCTTTAACAAT 57.550 33.333 0.00 0.00 0.00 2.71
89 90 8.434392 ACCACCACTACTCTAAATCTTTAACAA 58.566 33.333 0.00 0.00 0.00 2.83
90 91 7.970102 ACCACCACTACTCTAAATCTTTAACA 58.030 34.615 0.00 0.00 0.00 2.41
91 92 8.718734 CAACCACCACTACTCTAAATCTTTAAC 58.281 37.037 0.00 0.00 0.00 2.01
92 93 8.653191 TCAACCACCACTACTCTAAATCTTTAA 58.347 33.333 0.00 0.00 0.00 1.52
93 94 8.197592 TCAACCACCACTACTCTAAATCTTTA 57.802 34.615 0.00 0.00 0.00 1.85
94 95 7.074653 TCAACCACCACTACTCTAAATCTTT 57.925 36.000 0.00 0.00 0.00 2.52
95 96 6.681729 TCAACCACCACTACTCTAAATCTT 57.318 37.500 0.00 0.00 0.00 2.40
96 97 6.270231 AGTTCAACCACCACTACTCTAAATCT 59.730 38.462 0.00 0.00 0.00 2.40
97 98 6.465084 AGTTCAACCACCACTACTCTAAATC 58.535 40.000 0.00 0.00 0.00 2.17
98 99 6.435292 AGTTCAACCACCACTACTCTAAAT 57.565 37.500 0.00 0.00 0.00 1.40
99 100 5.881923 AGTTCAACCACCACTACTCTAAA 57.118 39.130 0.00 0.00 0.00 1.85
100 101 6.495872 ACATAGTTCAACCACCACTACTCTAA 59.504 38.462 0.00 0.00 0.00 2.10
101 102 6.014647 ACATAGTTCAACCACCACTACTCTA 58.985 40.000 0.00 0.00 0.00 2.43
102 103 4.838986 ACATAGTTCAACCACCACTACTCT 59.161 41.667 0.00 0.00 0.00 3.24
103 104 5.148651 ACATAGTTCAACCACCACTACTC 57.851 43.478 0.00 0.00 0.00 2.59
104 105 5.071250 TCAACATAGTTCAACCACCACTACT 59.929 40.000 0.00 0.00 0.00 2.57
105 106 5.302360 TCAACATAGTTCAACCACCACTAC 58.698 41.667 0.00 0.00 0.00 2.73
106 107 5.554437 TCAACATAGTTCAACCACCACTA 57.446 39.130 0.00 0.00 0.00 2.74
107 108 4.431416 TCAACATAGTTCAACCACCACT 57.569 40.909 0.00 0.00 0.00 4.00
108 109 5.240623 TGAATCAACATAGTTCAACCACCAC 59.759 40.000 0.00 0.00 0.00 4.16
109 110 5.380900 TGAATCAACATAGTTCAACCACCA 58.619 37.500 0.00 0.00 0.00 4.17
110 111 5.619981 GCTGAATCAACATAGTTCAACCACC 60.620 44.000 0.00 0.00 32.08 4.61
111 112 5.182001 AGCTGAATCAACATAGTTCAACCAC 59.818 40.000 0.00 0.00 32.08 4.16
112 113 5.181811 CAGCTGAATCAACATAGTTCAACCA 59.818 40.000 8.42 0.00 32.08 3.67
113 114 5.412594 TCAGCTGAATCAACATAGTTCAACC 59.587 40.000 15.67 0.00 32.08 3.77
114 115 6.148480 ACTCAGCTGAATCAACATAGTTCAAC 59.852 38.462 18.85 0.00 32.08 3.18
115 116 6.233434 ACTCAGCTGAATCAACATAGTTCAA 58.767 36.000 18.85 0.00 32.08 2.69
116 117 5.798132 ACTCAGCTGAATCAACATAGTTCA 58.202 37.500 18.85 0.00 0.00 3.18
117 118 7.201565 GGTTACTCAGCTGAATCAACATAGTTC 60.202 40.741 24.67 11.89 0.00 3.01
118 119 6.595716 GGTTACTCAGCTGAATCAACATAGTT 59.404 38.462 24.67 5.95 0.00 2.24
119 120 6.109359 GGTTACTCAGCTGAATCAACATAGT 58.891 40.000 24.67 16.42 0.00 2.12
120 121 5.525378 GGGTTACTCAGCTGAATCAACATAG 59.475 44.000 24.67 12.47 0.00 2.23
121 122 5.045942 TGGGTTACTCAGCTGAATCAACATA 60.046 40.000 24.67 15.52 0.00 2.29
122 123 4.263462 TGGGTTACTCAGCTGAATCAACAT 60.263 41.667 24.67 8.52 0.00 2.71
123 124 3.072330 TGGGTTACTCAGCTGAATCAACA 59.928 43.478 24.67 15.51 0.00 3.33
124 125 3.674997 TGGGTTACTCAGCTGAATCAAC 58.325 45.455 18.85 19.11 0.00 3.18
125 126 4.019411 TGATGGGTTACTCAGCTGAATCAA 60.019 41.667 18.85 8.90 0.00 2.57
126 127 3.519107 TGATGGGTTACTCAGCTGAATCA 59.481 43.478 18.85 17.82 0.00 2.57
127 128 4.142609 TGATGGGTTACTCAGCTGAATC 57.857 45.455 18.85 15.47 0.00 2.52
128 129 4.164796 TGATGATGGGTTACTCAGCTGAAT 59.835 41.667 18.85 10.98 0.00 2.57
129 130 3.519107 TGATGATGGGTTACTCAGCTGAA 59.481 43.478 18.85 0.00 0.00 3.02
130 131 3.106827 TGATGATGGGTTACTCAGCTGA 58.893 45.455 17.19 17.19 0.00 4.26
131 132 3.201290 GTGATGATGGGTTACTCAGCTG 58.799 50.000 7.63 7.63 0.00 4.24
132 133 2.840038 TGTGATGATGGGTTACTCAGCT 59.160 45.455 1.23 0.00 0.00 4.24
133 134 3.201290 CTGTGATGATGGGTTACTCAGC 58.799 50.000 0.00 0.00 0.00 4.26
134 135 4.478206 ACTGTGATGATGGGTTACTCAG 57.522 45.455 0.00 0.00 0.00 3.35
135 136 4.285775 TGAACTGTGATGATGGGTTACTCA 59.714 41.667 0.00 0.00 0.00 3.41
136 137 4.631813 GTGAACTGTGATGATGGGTTACTC 59.368 45.833 0.00 0.00 0.00 2.59
137 138 4.041567 TGTGAACTGTGATGATGGGTTACT 59.958 41.667 0.00 0.00 0.00 2.24
138 139 4.323417 TGTGAACTGTGATGATGGGTTAC 58.677 43.478 0.00 0.00 0.00 2.50
139 140 4.632327 TGTGAACTGTGATGATGGGTTA 57.368 40.909 0.00 0.00 0.00 2.85
140 141 3.507162 TGTGAACTGTGATGATGGGTT 57.493 42.857 0.00 0.00 0.00 4.11
141 142 3.149196 GTTGTGAACTGTGATGATGGGT 58.851 45.455 0.00 0.00 0.00 4.51
142 143 3.148412 TGTTGTGAACTGTGATGATGGG 58.852 45.455 0.00 0.00 0.00 4.00
143 144 4.834357 TTGTTGTGAACTGTGATGATGG 57.166 40.909 0.00 0.00 0.00 3.51
144 145 5.217393 CCTTTGTTGTGAACTGTGATGATG 58.783 41.667 0.00 0.00 0.00 3.07
145 146 4.279169 CCCTTTGTTGTGAACTGTGATGAT 59.721 41.667 0.00 0.00 0.00 2.45
146 147 3.631686 CCCTTTGTTGTGAACTGTGATGA 59.368 43.478 0.00 0.00 0.00 2.92
147 148 3.381272 ACCCTTTGTTGTGAACTGTGATG 59.619 43.478 0.00 0.00 0.00 3.07
148 149 3.381272 CACCCTTTGTTGTGAACTGTGAT 59.619 43.478 0.00 0.00 34.37 3.06
149 150 2.752354 CACCCTTTGTTGTGAACTGTGA 59.248 45.455 0.00 0.00 34.37 3.58
150 151 2.752354 TCACCCTTTGTTGTGAACTGTG 59.248 45.455 0.00 0.00 38.48 3.66
151 152 3.080300 TCACCCTTTGTTGTGAACTGT 57.920 42.857 0.00 0.00 38.48 3.55
152 153 5.049405 GTCTATCACCCTTTGTTGTGAACTG 60.049 44.000 0.00 0.00 44.04 3.16
153 154 5.063880 GTCTATCACCCTTTGTTGTGAACT 58.936 41.667 0.00 0.00 44.04 3.01
154 155 5.049405 CAGTCTATCACCCTTTGTTGTGAAC 60.049 44.000 0.00 0.00 44.04 3.18
155 156 5.063204 CAGTCTATCACCCTTTGTTGTGAA 58.937 41.667 0.00 0.00 44.04 3.18
156 157 4.346709 TCAGTCTATCACCCTTTGTTGTGA 59.653 41.667 0.00 0.00 44.86 3.58
157 158 4.641396 TCAGTCTATCACCCTTTGTTGTG 58.359 43.478 0.00 0.00 0.00 3.33
158 159 4.974645 TCAGTCTATCACCCTTTGTTGT 57.025 40.909 0.00 0.00 0.00 3.32
159 160 6.824305 ATTTCAGTCTATCACCCTTTGTTG 57.176 37.500 0.00 0.00 0.00 3.33
160 161 7.942341 TGTAATTTCAGTCTATCACCCTTTGTT 59.058 33.333 0.00 0.00 0.00 2.83
161 162 7.458397 TGTAATTTCAGTCTATCACCCTTTGT 58.542 34.615 0.00 0.00 0.00 2.83
162 163 7.066284 CCTGTAATTTCAGTCTATCACCCTTTG 59.934 40.741 10.72 0.00 34.02 2.77
163 164 7.112779 CCTGTAATTTCAGTCTATCACCCTTT 58.887 38.462 10.72 0.00 34.02 3.11
164 165 6.353082 CCCTGTAATTTCAGTCTATCACCCTT 60.353 42.308 10.72 0.00 34.02 3.95
165 166 5.131142 CCCTGTAATTTCAGTCTATCACCCT 59.869 44.000 10.72 0.00 34.02 4.34
166 167 5.368989 CCCTGTAATTTCAGTCTATCACCC 58.631 45.833 10.72 0.00 34.02 4.61
167 168 4.816925 GCCCTGTAATTTCAGTCTATCACC 59.183 45.833 10.72 0.00 34.02 4.02
168 169 5.428253 TGCCCTGTAATTTCAGTCTATCAC 58.572 41.667 10.72 0.00 34.02 3.06
169 170 5.396772 CCTGCCCTGTAATTTCAGTCTATCA 60.397 44.000 10.72 1.70 34.02 2.15
170 171 5.059833 CCTGCCCTGTAATTTCAGTCTATC 58.940 45.833 10.72 0.00 34.02 2.08
171 172 4.687219 GCCTGCCCTGTAATTTCAGTCTAT 60.687 45.833 10.72 0.00 34.02 1.98
172 173 3.370527 GCCTGCCCTGTAATTTCAGTCTA 60.371 47.826 10.72 0.00 34.02 2.59
173 174 2.619074 GCCTGCCCTGTAATTTCAGTCT 60.619 50.000 10.72 0.00 34.02 3.24
174 175 1.745653 GCCTGCCCTGTAATTTCAGTC 59.254 52.381 10.72 3.68 34.02 3.51
175 176 1.616994 GGCCTGCCCTGTAATTTCAGT 60.617 52.381 10.72 0.00 34.02 3.41
176 177 1.106285 GGCCTGCCCTGTAATTTCAG 58.894 55.000 5.16 5.16 35.45 3.02
177 178 0.679640 CGGCCTGCCCTGTAATTTCA 60.680 55.000 0.00 0.00 0.00 2.69
178 179 1.384222 CCGGCCTGCCCTGTAATTTC 61.384 60.000 0.00 0.00 0.00 2.17
179 180 1.379843 CCGGCCTGCCCTGTAATTT 60.380 57.895 0.00 0.00 0.00 1.82
180 181 2.275418 CCGGCCTGCCCTGTAATT 59.725 61.111 0.00 0.00 0.00 1.40
181 182 4.506255 GCCGGCCTGCCCTGTAAT 62.506 66.667 18.11 0.00 0.00 1.89
194 195 0.679640 TTAGATTGTTGGCCTGCCGG 60.680 55.000 3.32 0.00 39.42 6.13
195 196 1.334869 GATTAGATTGTTGGCCTGCCG 59.665 52.381 3.32 0.00 39.42 5.69
196 197 1.334869 CGATTAGATTGTTGGCCTGCC 59.665 52.381 3.32 0.00 0.00 4.85
197 198 1.268743 GCGATTAGATTGTTGGCCTGC 60.269 52.381 3.32 0.00 0.00 4.85
198 199 2.016318 TGCGATTAGATTGTTGGCCTG 58.984 47.619 3.32 0.00 0.00 4.85
199 200 2.418368 TGCGATTAGATTGTTGGCCT 57.582 45.000 3.32 0.00 0.00 5.19
200 201 3.316308 AGATTGCGATTAGATTGTTGGCC 59.684 43.478 0.00 0.00 0.00 5.36
201 202 4.035558 TCAGATTGCGATTAGATTGTTGGC 59.964 41.667 0.00 0.00 0.00 4.52
202 203 5.739752 TCAGATTGCGATTAGATTGTTGG 57.260 39.130 0.00 0.00 0.00 3.77
203 204 5.203370 GCTCAGATTGCGATTAGATTGTTG 58.797 41.667 0.00 0.00 0.00 3.33
204 205 4.274459 GGCTCAGATTGCGATTAGATTGTT 59.726 41.667 0.00 0.00 0.00 2.83
205 206 3.812053 GGCTCAGATTGCGATTAGATTGT 59.188 43.478 0.00 0.00 0.00 2.71
206 207 3.811497 TGGCTCAGATTGCGATTAGATTG 59.189 43.478 0.00 0.00 0.00 2.67
207 208 4.077300 TGGCTCAGATTGCGATTAGATT 57.923 40.909 0.00 0.00 0.00 2.40
208 209 3.758755 TGGCTCAGATTGCGATTAGAT 57.241 42.857 0.00 0.00 0.00 1.98
209 210 3.198068 GTTGGCTCAGATTGCGATTAGA 58.802 45.455 0.00 0.00 0.00 2.10
210 211 2.938451 TGTTGGCTCAGATTGCGATTAG 59.062 45.455 0.00 0.00 0.00 1.73
211 212 2.984562 TGTTGGCTCAGATTGCGATTA 58.015 42.857 0.00 0.00 0.00 1.75
212 213 1.825090 TGTTGGCTCAGATTGCGATT 58.175 45.000 0.00 0.00 0.00 3.34
213 214 2.048444 ATGTTGGCTCAGATTGCGAT 57.952 45.000 0.00 0.00 0.00 4.58
214 215 2.093500 AGTATGTTGGCTCAGATTGCGA 60.093 45.455 0.00 0.00 0.00 5.10
215 216 2.283298 AGTATGTTGGCTCAGATTGCG 58.717 47.619 0.00 0.00 0.00 4.85
216 217 4.260948 GCTAAGTATGTTGGCTCAGATTGC 60.261 45.833 0.00 0.00 0.00 3.56
217 218 4.025396 CGCTAAGTATGTTGGCTCAGATTG 60.025 45.833 0.00 0.00 0.00 2.67
218 219 4.122776 CGCTAAGTATGTTGGCTCAGATT 58.877 43.478 0.00 0.00 0.00 2.40
219 220 3.722147 CGCTAAGTATGTTGGCTCAGAT 58.278 45.455 0.00 0.00 0.00 2.90
220 221 2.738643 GCGCTAAGTATGTTGGCTCAGA 60.739 50.000 0.00 0.00 0.00 3.27
221 222 1.594862 GCGCTAAGTATGTTGGCTCAG 59.405 52.381 0.00 0.00 0.00 3.35
222 223 1.207089 AGCGCTAAGTATGTTGGCTCA 59.793 47.619 8.99 0.00 0.00 4.26
223 224 1.861575 GAGCGCTAAGTATGTTGGCTC 59.138 52.381 11.50 0.00 38.65 4.70
224 225 1.802880 CGAGCGCTAAGTATGTTGGCT 60.803 52.381 11.50 0.00 0.00 4.75
225 226 0.577269 CGAGCGCTAAGTATGTTGGC 59.423 55.000 11.50 0.00 0.00 4.52
226 227 1.852895 GACGAGCGCTAAGTATGTTGG 59.147 52.381 11.50 0.00 0.00 3.77
227 228 2.798680 AGACGAGCGCTAAGTATGTTG 58.201 47.619 11.50 0.00 0.00 3.33
228 229 3.626670 ACTAGACGAGCGCTAAGTATGTT 59.373 43.478 11.50 0.00 0.00 2.71
229 230 3.204526 ACTAGACGAGCGCTAAGTATGT 58.795 45.455 11.50 10.29 0.00 2.29
230 231 3.364167 GGACTAGACGAGCGCTAAGTATG 60.364 52.174 11.50 9.68 0.00 2.39
231 232 2.807392 GGACTAGACGAGCGCTAAGTAT 59.193 50.000 11.50 14.03 0.00 2.12
232 233 2.208431 GGACTAGACGAGCGCTAAGTA 58.792 52.381 11.50 0.00 0.00 2.24
233 234 1.015868 GGACTAGACGAGCGCTAAGT 58.984 55.000 11.50 14.67 0.00 2.24
234 235 1.015109 TGGACTAGACGAGCGCTAAG 58.985 55.000 11.50 10.82 0.00 2.18
235 236 1.333931 CATGGACTAGACGAGCGCTAA 59.666 52.381 11.50 0.00 0.00 3.09
236 237 0.945099 CATGGACTAGACGAGCGCTA 59.055 55.000 11.50 0.00 0.00 4.26
241 242 0.663688 CGGTCCATGGACTAGACGAG 59.336 60.000 37.26 19.13 44.04 4.18
260 261 6.455360 TCAGCATTGATTTACCAATCCTTC 57.545 37.500 0.00 0.00 38.50 3.46
270 271 5.245751 ACACCACCAATTCAGCATTGATTTA 59.754 36.000 0.00 0.00 44.78 1.40
277 278 3.084039 CAGTACACCACCAATTCAGCAT 58.916 45.455 0.00 0.00 0.00 3.79
292 293 6.358974 TGAAGGATGATTCAGTTCAGTACA 57.641 37.500 0.00 0.00 34.31 2.90
326 327 4.766891 CCCTTCATCGCCCATTGTATTAAT 59.233 41.667 0.00 0.00 0.00 1.40
329 330 2.174639 TCCCTTCATCGCCCATTGTATT 59.825 45.455 0.00 0.00 0.00 1.89
330 331 1.774254 TCCCTTCATCGCCCATTGTAT 59.226 47.619 0.00 0.00 0.00 2.29
331 332 1.140852 CTCCCTTCATCGCCCATTGTA 59.859 52.381 0.00 0.00 0.00 2.41
332 333 0.107017 CTCCCTTCATCGCCCATTGT 60.107 55.000 0.00 0.00 0.00 2.71
333 334 0.820891 CCTCCCTTCATCGCCCATTG 60.821 60.000 0.00 0.00 0.00 2.82
337 338 1.147153 CTTCCTCCCTTCATCGCCC 59.853 63.158 0.00 0.00 0.00 6.13
408 429 4.754667 GGCCCAACCTCGTCGTCC 62.755 72.222 0.00 0.00 34.51 4.79
451 472 4.803426 GAGCTCACCGCCCACGAG 62.803 72.222 9.40 0.00 43.93 4.18
460 481 3.844090 GAGAGGGCCGAGCTCACC 61.844 72.222 15.40 14.23 0.00 4.02
461 482 3.844090 GGAGAGGGCCGAGCTCAC 61.844 72.222 15.40 4.74 0.00 3.51
462 483 4.067512 AGGAGAGGGCCGAGCTCA 62.068 66.667 15.40 0.00 0.00 4.26
463 484 3.223589 GAGGAGAGGGCCGAGCTC 61.224 72.222 2.73 2.73 0.00 4.09
464 485 4.851214 GGAGGAGAGGGCCGAGCT 62.851 72.222 0.00 0.00 0.00 4.09
495 516 4.208686 GGAGGAGGTGCTACGGCG 62.209 72.222 4.80 4.80 42.25 6.46
496 517 2.760385 AGGAGGAGGTGCTACGGC 60.760 66.667 0.00 0.00 39.26 5.68
497 518 2.128507 GGAGGAGGAGGTGCTACGG 61.129 68.421 0.00 0.00 0.00 4.02
498 519 1.076632 AGGAGGAGGAGGTGCTACG 60.077 63.158 0.00 0.00 30.86 3.51
499 520 1.681486 GCAGGAGGAGGAGGTGCTAC 61.681 65.000 0.00 0.00 0.00 3.58
500 521 1.381872 GCAGGAGGAGGAGGTGCTA 60.382 63.158 0.00 0.00 0.00 3.49
501 522 2.686835 GCAGGAGGAGGAGGTGCT 60.687 66.667 0.00 0.00 0.00 4.40
502 523 3.005539 TGCAGGAGGAGGAGGTGC 61.006 66.667 0.00 0.00 34.62 5.01
503 524 2.664081 GGTGCAGGAGGAGGAGGTG 61.664 68.421 0.00 0.00 0.00 4.00
504 525 2.284995 GGTGCAGGAGGAGGAGGT 60.285 66.667 0.00 0.00 0.00 3.85
505 526 1.692042 ATGGTGCAGGAGGAGGAGG 60.692 63.158 0.00 0.00 0.00 4.30
506 527 0.690411 AGATGGTGCAGGAGGAGGAG 60.690 60.000 0.00 0.00 0.00 3.69
507 528 0.689080 GAGATGGTGCAGGAGGAGGA 60.689 60.000 0.00 0.00 0.00 3.71
508 529 1.694133 GGAGATGGTGCAGGAGGAGG 61.694 65.000 0.00 0.00 0.00 4.30
509 530 0.690411 AGGAGATGGTGCAGGAGGAG 60.690 60.000 0.00 0.00 0.00 3.69
510 531 0.979709 CAGGAGATGGTGCAGGAGGA 60.980 60.000 0.00 0.00 0.00 3.71
511 532 1.525923 CAGGAGATGGTGCAGGAGG 59.474 63.158 0.00 0.00 0.00 4.30
512 533 1.153208 GCAGGAGATGGTGCAGGAG 60.153 63.158 0.00 0.00 39.62 3.69
513 534 1.919816 TGCAGGAGATGGTGCAGGA 60.920 57.895 0.00 0.00 44.70 3.86
514 535 2.672908 TGCAGGAGATGGTGCAGG 59.327 61.111 0.00 0.00 44.70 4.85
517 538 0.462759 GGTACTGCAGGAGATGGTGC 60.463 60.000 19.93 0.00 40.29 5.01
518 539 0.179000 GGGTACTGCAGGAGATGGTG 59.821 60.000 19.93 0.00 0.00 4.17
519 540 0.252696 TGGGTACTGCAGGAGATGGT 60.253 55.000 19.93 0.00 0.00 3.55
520 541 0.179000 GTGGGTACTGCAGGAGATGG 59.821 60.000 19.93 0.00 0.00 3.51
521 542 0.179000 GGTGGGTACTGCAGGAGATG 59.821 60.000 19.93 0.00 0.00 2.90
522 543 0.252696 TGGTGGGTACTGCAGGAGAT 60.253 55.000 19.93 0.00 0.00 2.75
523 544 0.472925 TTGGTGGGTACTGCAGGAGA 60.473 55.000 19.93 0.00 0.00 3.71
524 545 0.321653 GTTGGTGGGTACTGCAGGAG 60.322 60.000 19.93 0.00 0.00 3.69
525 546 1.758592 GTTGGTGGGTACTGCAGGA 59.241 57.895 19.93 6.60 0.00 3.86
526 547 1.671054 CGTTGGTGGGTACTGCAGG 60.671 63.158 19.93 0.00 0.00 4.85
527 548 2.325082 GCGTTGGTGGGTACTGCAG 61.325 63.158 13.48 13.48 0.00 4.41
528 549 2.281208 GCGTTGGTGGGTACTGCA 60.281 61.111 0.00 0.00 0.00 4.41
529 550 3.053896 GGCGTTGGTGGGTACTGC 61.054 66.667 0.00 0.00 0.00 4.40
530 551 2.359478 GGGCGTTGGTGGGTACTG 60.359 66.667 0.00 0.00 0.00 2.74
531 552 2.850130 TGGGCGTTGGTGGGTACT 60.850 61.111 0.00 0.00 0.00 2.73
532 553 2.670592 GTGGGCGTTGGTGGGTAC 60.671 66.667 0.00 0.00 0.00 3.34
533 554 2.472414 GATGTGGGCGTTGGTGGGTA 62.472 60.000 0.00 0.00 0.00 3.69
534 555 3.860930 GATGTGGGCGTTGGTGGGT 62.861 63.158 0.00 0.00 0.00 4.51
535 556 3.061848 GATGTGGGCGTTGGTGGG 61.062 66.667 0.00 0.00 0.00 4.61
536 557 0.393673 TATGATGTGGGCGTTGGTGG 60.394 55.000 0.00 0.00 0.00 4.61
537 558 0.732571 GTATGATGTGGGCGTTGGTG 59.267 55.000 0.00 0.00 0.00 4.17
538 559 0.742990 CGTATGATGTGGGCGTTGGT 60.743 55.000 0.00 0.00 0.00 3.67
539 560 0.461163 TCGTATGATGTGGGCGTTGG 60.461 55.000 0.00 0.00 0.00 3.77
540 561 0.650512 GTCGTATGATGTGGGCGTTG 59.349 55.000 0.00 0.00 0.00 4.10
541 562 0.461339 GGTCGTATGATGTGGGCGTT 60.461 55.000 0.00 0.00 0.00 4.84
542 563 1.143183 GGTCGTATGATGTGGGCGT 59.857 57.895 0.00 0.00 0.00 5.68
543 564 1.594293 GGGTCGTATGATGTGGGCG 60.594 63.158 0.00 0.00 0.00 6.13
544 565 1.227853 GGGGTCGTATGATGTGGGC 60.228 63.158 0.00 0.00 0.00 5.36
545 566 1.069090 CGGGGTCGTATGATGTGGG 59.931 63.158 0.00 0.00 0.00 4.61
546 567 0.032130 CTCGGGGTCGTATGATGTGG 59.968 60.000 0.00 0.00 37.69 4.17
547 568 0.597637 GCTCGGGGTCGTATGATGTG 60.598 60.000 0.00 0.00 37.69 3.21
548 569 1.740285 GCTCGGGGTCGTATGATGT 59.260 57.895 0.00 0.00 37.69 3.06
549 570 1.371758 CGCTCGGGGTCGTATGATG 60.372 63.158 0.00 0.00 37.69 3.07
550 571 3.039988 CGCTCGGGGTCGTATGAT 58.960 61.111 0.00 0.00 37.69 2.45
551 572 3.896133 GCGCTCGGGGTCGTATGA 61.896 66.667 0.00 0.00 37.69 2.15
562 583 4.796231 AGTAACCCTGCGCGCTCG 62.796 66.667 33.29 22.16 39.07 5.03
563 584 2.886124 GAGTAACCCTGCGCGCTC 60.886 66.667 33.29 14.99 0.00 5.03
564 585 3.691342 TGAGTAACCCTGCGCGCT 61.691 61.111 33.29 14.40 0.00 5.92
565 586 3.488090 GTGAGTAACCCTGCGCGC 61.488 66.667 27.26 27.26 0.00 6.86
566 587 3.179265 CGTGAGTAACCCTGCGCG 61.179 66.667 0.00 0.00 0.00 6.86
567 588 2.813908 CCGTGAGTAACCCTGCGC 60.814 66.667 0.00 0.00 0.00 6.09
568 589 2.813908 GCCGTGAGTAACCCTGCG 60.814 66.667 0.00 0.00 0.00 5.18
569 590 2.813908 CGCCGTGAGTAACCCTGC 60.814 66.667 0.00 0.00 0.00 4.85
570 591 2.125673 CCGCCGTGAGTAACCCTG 60.126 66.667 0.00 0.00 0.00 4.45
571 592 3.387947 CCCGCCGTGAGTAACCCT 61.388 66.667 0.00 0.00 0.00 4.34
574 595 4.382320 TGGCCCGCCGTGAGTAAC 62.382 66.667 0.00 0.00 39.42 2.50
575 596 4.077184 CTGGCCCGCCGTGAGTAA 62.077 66.667 0.00 0.00 39.42 2.24
594 615 1.152963 AGAGAGAGCGAGCTCCCTC 60.153 63.158 23.42 23.42 44.84 4.30
595 616 1.152963 GAGAGAGAGCGAGCTCCCT 60.153 63.158 20.15 14.83 43.70 4.20
596 617 1.152963 AGAGAGAGAGCGAGCTCCC 60.153 63.158 20.15 9.95 43.70 4.30
597 618 0.179045 AGAGAGAGAGAGCGAGCTCC 60.179 60.000 20.15 12.29 43.70 4.70
598 619 1.202580 AGAGAGAGAGAGAGCGAGCTC 60.203 57.143 16.63 16.63 43.03 4.09
599 620 0.833287 AGAGAGAGAGAGAGCGAGCT 59.167 55.000 0.00 0.00 0.00 4.09
600 621 1.202580 AGAGAGAGAGAGAGAGCGAGC 60.203 57.143 0.00 0.00 0.00 5.03
601 622 2.363680 AGAGAGAGAGAGAGAGAGCGAG 59.636 54.545 0.00 0.00 0.00 5.03
602 623 2.362397 GAGAGAGAGAGAGAGAGAGCGA 59.638 54.545 0.00 0.00 0.00 4.93
603 624 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
604 625 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
605 626 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
606 627 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
607 628 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
608 629 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
609 630 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
610 631 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
611 632 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
612 633 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
613 634 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
614 635 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
615 636 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
616 637 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
617 638 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
618 639 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
619 640 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
620 641 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
621 642 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
622 643 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
623 644 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
624 645 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
625 646 4.648762 AGTGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
626 647 4.614475 AGTGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
627 648 4.403752 TGAGTGAGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
628 649 4.160439 GTGAGTGAGAGAGAGAGAGAGAGA 59.840 50.000 0.00 0.00 0.00 3.10
629 650 4.437239 GTGAGTGAGAGAGAGAGAGAGAG 58.563 52.174 0.00 0.00 0.00 3.20
630 651 3.197766 GGTGAGTGAGAGAGAGAGAGAGA 59.802 52.174 0.00 0.00 0.00 3.10
631 652 3.055167 TGGTGAGTGAGAGAGAGAGAGAG 60.055 52.174 0.00 0.00 0.00 3.20
632 653 2.909662 TGGTGAGTGAGAGAGAGAGAGA 59.090 50.000 0.00 0.00 0.00 3.10
636 657 1.354031 AGCTGGTGAGTGAGAGAGAGA 59.646 52.381 0.00 0.00 0.00 3.10
698 719 2.071844 TTAAGGATCGAGCGCGGAGG 62.072 60.000 10.69 0.00 38.28 4.30
699 720 0.248907 TTTAAGGATCGAGCGCGGAG 60.249 55.000 10.69 0.00 38.28 4.63
702 723 0.044161 CGTTTTAAGGATCGAGCGCG 60.044 55.000 2.41 2.41 39.35 6.86
703 724 0.300789 CCGTTTTAAGGATCGAGCGC 59.699 55.000 0.00 0.00 0.00 5.92
704 725 0.300789 GCCGTTTTAAGGATCGAGCG 59.699 55.000 0.00 0.00 0.00 5.03
705 726 0.300789 CGCCGTTTTAAGGATCGAGC 59.699 55.000 0.00 0.00 0.00 5.03
706 727 0.928229 CCGCCGTTTTAAGGATCGAG 59.072 55.000 0.00 0.00 0.00 4.04
707 728 1.085501 GCCGCCGTTTTAAGGATCGA 61.086 55.000 0.00 0.00 0.00 3.59
708 729 1.350665 GCCGCCGTTTTAAGGATCG 59.649 57.895 0.00 0.00 0.00 3.69
709 730 1.721664 GGGCCGCCGTTTTAAGGATC 61.722 60.000 2.55 0.00 0.00 3.36
710 731 1.751544 GGGCCGCCGTTTTAAGGAT 60.752 57.895 2.55 0.00 0.00 3.24
711 732 2.360225 GGGCCGCCGTTTTAAGGA 60.360 61.111 2.55 0.00 0.00 3.36
712 733 2.673687 TGGGCCGCCGTTTTAAGG 60.674 61.111 2.55 0.00 0.00 2.69
713 734 1.969589 ACTGGGCCGCCGTTTTAAG 60.970 57.895 2.55 0.00 0.00 1.85
714 735 2.113562 ACTGGGCCGCCGTTTTAA 59.886 55.556 2.55 0.00 0.00 1.52
715 736 2.670251 CACTGGGCCGCCGTTTTA 60.670 61.111 2.55 0.00 0.00 1.52
727 748 0.179073 CTCCGCTTATGACCCACTGG 60.179 60.000 0.00 0.00 37.80 4.00
728 749 0.811616 GCTCCGCTTATGACCCACTG 60.812 60.000 0.00 0.00 0.00 3.66
907 934 2.746803 GGTTCGGTTCGGGCGAATG 61.747 63.158 0.00 0.00 36.45 2.67
908 935 2.435410 GGTTCGGTTCGGGCGAAT 60.435 61.111 0.00 0.00 36.45 3.34
910 937 3.457625 TTTGGTTCGGTTCGGGCGA 62.458 57.895 0.00 0.00 0.00 5.54
912 939 2.640989 GTTTGGTTCGGTTCGGGC 59.359 61.111 0.00 0.00 0.00 6.13
1112 1284 3.386237 GAGGACTGGAGCGGCTGT 61.386 66.667 7.50 0.00 0.00 4.40
1115 1287 3.844090 GAGGAGGACTGGAGCGGC 61.844 72.222 0.00 0.00 0.00 6.53
1118 1290 4.200283 CGCGAGGAGGACTGGAGC 62.200 72.222 0.00 0.00 0.00 4.70
1122 1294 3.827898 GGGACGCGAGGAGGACTG 61.828 72.222 15.93 0.00 0.00 3.51
1124 1296 3.827898 CAGGGACGCGAGGAGGAC 61.828 72.222 15.93 0.00 0.00 3.85
1202 1389 4.109675 AATCCCAGAACCCCGCGG 62.110 66.667 21.04 21.04 0.00 6.46
1203 1390 2.824041 CAATCCCAGAACCCCGCG 60.824 66.667 0.00 0.00 0.00 6.46
1204 1391 2.440247 CCAATCCCAGAACCCCGC 60.440 66.667 0.00 0.00 0.00 6.13
1205 1392 2.440247 GCCAATCCCAGAACCCCG 60.440 66.667 0.00 0.00 0.00 5.73
1325 1514 3.753070 GAACCCTAGACGGCGCGAG 62.753 68.421 12.10 5.13 0.00 5.03
1328 1517 4.867599 CCGAACCCTAGACGGCGC 62.868 72.222 6.90 0.00 40.19 6.53
1333 1522 1.139095 CGAGTGCCGAACCCTAGAC 59.861 63.158 0.00 0.00 41.76 2.59
1334 1523 0.896940 AACGAGTGCCGAACCCTAGA 60.897 55.000 0.00 0.00 41.76 2.43
1335 1524 0.037605 AAACGAGTGCCGAACCCTAG 60.038 55.000 0.00 0.00 41.76 3.02
1336 1525 0.037975 GAAACGAGTGCCGAACCCTA 60.038 55.000 0.00 0.00 41.76 3.53
1337 1526 1.301479 GAAACGAGTGCCGAACCCT 60.301 57.895 0.00 0.00 41.76 4.34
1338 1527 2.322830 GGAAACGAGTGCCGAACCC 61.323 63.158 0.00 0.00 41.76 4.11
1339 1528 2.322830 GGGAAACGAGTGCCGAACC 61.323 63.158 0.00 0.00 41.76 3.62
1340 1529 0.953960 ATGGGAAACGAGTGCCGAAC 60.954 55.000 0.00 0.00 41.76 3.95
1341 1530 0.672401 GATGGGAAACGAGTGCCGAA 60.672 55.000 0.00 0.00 41.76 4.30
1342 1531 1.079405 GATGGGAAACGAGTGCCGA 60.079 57.895 0.00 0.00 41.76 5.54
1343 1532 2.106683 GGATGGGAAACGAGTGCCG 61.107 63.158 0.00 0.00 45.44 5.69
1344 1533 2.106683 CGGATGGGAAACGAGTGCC 61.107 63.158 0.00 0.00 0.00 5.01
1345 1534 0.953960 AACGGATGGGAAACGAGTGC 60.954 55.000 0.00 0.00 0.00 4.40
1346 1535 1.519408 AAACGGATGGGAAACGAGTG 58.481 50.000 0.00 0.00 0.00 3.51
1347 1536 2.354403 CCTAAACGGATGGGAAACGAGT 60.354 50.000 0.00 0.00 33.16 4.18
1414 1603 2.814336 ACAGAAAGAAATTCGTCCCTGC 59.186 45.455 9.67 0.00 43.15 4.85
1430 1619 7.453393 AGTCACTCCTAATCAAATCAACAGAA 58.547 34.615 0.00 0.00 0.00 3.02
1431 1620 7.009179 AGTCACTCCTAATCAAATCAACAGA 57.991 36.000 0.00 0.00 0.00 3.41
1432 1621 7.678947 AAGTCACTCCTAATCAAATCAACAG 57.321 36.000 0.00 0.00 0.00 3.16
1433 1622 8.463930 AAAAGTCACTCCTAATCAAATCAACA 57.536 30.769 0.00 0.00 0.00 3.33
1454 1644 3.439129 GGAAACAGTCGTATGGGGAAAAG 59.561 47.826 0.00 0.00 0.00 2.27
1528 1718 9.817365 CAATCTATGCACCTTATTCGATTTTAG 57.183 33.333 0.00 0.00 0.00 1.85
1578 1769 3.929610 GTGAACTATTGTCTGGACTCTGC 59.070 47.826 2.38 0.00 0.00 4.26
1633 1825 6.129393 CAGAAATATGATTCGGCAAACTACG 58.871 40.000 0.00 0.00 34.46 3.51
1723 1917 0.463654 GCAGTGGCGGACATATTGGA 60.464 55.000 0.00 0.00 0.00 3.53
1760 1956 7.362802 AGTTACTGTTTTAAGAGGAGTGAGT 57.637 36.000 0.00 0.00 0.00 3.41
1761 1957 9.760077 TTTAGTTACTGTTTTAAGAGGAGTGAG 57.240 33.333 0.00 0.00 0.00 3.51
1762 1958 9.538508 GTTTAGTTACTGTTTTAAGAGGAGTGA 57.461 33.333 0.00 0.00 0.00 3.41
1763 1959 9.543783 AGTTTAGTTACTGTTTTAAGAGGAGTG 57.456 33.333 0.00 0.00 0.00 3.51
1818 2014 0.242017 GCTGAGTGGCATGTCAAACC 59.758 55.000 0.00 0.00 0.00 3.27
1892 2090 2.630317 GGCATCGATTCTGCGCAG 59.370 61.111 31.53 31.53 40.59 5.18
1902 2100 4.147449 CTGGGCTCACGGCATCGA 62.147 66.667 0.00 0.00 44.01 3.59
1935 2133 4.037858 AGAAAAGAAACAAGCTGCTGTG 57.962 40.909 1.35 6.61 0.00 3.66
1954 2152 5.638657 GTGCATAATCAAAATTGCCACAAGA 59.361 36.000 0.00 0.00 34.20 3.02
1986 2203 4.216411 TCACATCTAAAGCCCTTGTACC 57.784 45.455 0.00 0.00 0.00 3.34
1987 2204 6.599638 AGATTTCACATCTAAAGCCCTTGTAC 59.400 38.462 0.00 0.00 0.00 2.90
1988 2205 6.721318 AGATTTCACATCTAAAGCCCTTGTA 58.279 36.000 0.00 0.00 0.00 2.41
1989 2206 5.574188 AGATTTCACATCTAAAGCCCTTGT 58.426 37.500 0.00 0.00 0.00 3.16
1990 2207 5.884792 AGAGATTTCACATCTAAAGCCCTTG 59.115 40.000 0.00 0.00 0.00 3.61
1991 2208 6.069731 AGAGAGATTTCACATCTAAAGCCCTT 60.070 38.462 0.00 0.00 0.00 3.95
1992 2209 5.428131 AGAGAGATTTCACATCTAAAGCCCT 59.572 40.000 0.00 0.00 0.00 5.19
1993 2210 5.679601 AGAGAGATTTCACATCTAAAGCCC 58.320 41.667 0.00 0.00 0.00 5.19
1994 2211 6.820656 TGAAGAGAGATTTCACATCTAAAGCC 59.179 38.462 0.00 0.00 30.03 4.35
1995 2212 7.763528 TCTGAAGAGAGATTTCACATCTAAAGC 59.236 37.037 0.00 0.00 31.66 3.51
1996 2213 9.820725 ATCTGAAGAGAGATTTCACATCTAAAG 57.179 33.333 0.00 0.00 31.66 1.85
2000 2217 8.369424 CCATATCTGAAGAGAGATTTCACATCT 58.631 37.037 0.00 0.00 34.42 2.90
2001 2218 8.149647 ACCATATCTGAAGAGAGATTTCACATC 58.850 37.037 0.00 0.00 34.42 3.06
2002 2219 8.032045 ACCATATCTGAAGAGAGATTTCACAT 57.968 34.615 0.00 0.00 34.42 3.21
2003 2220 7.429374 ACCATATCTGAAGAGAGATTTCACA 57.571 36.000 0.00 0.00 34.42 3.58
2004 2221 9.995003 ATAACCATATCTGAAGAGAGATTTCAC 57.005 33.333 0.00 0.00 34.42 3.18
2075 2292 5.780282 TCCCTTATTCACTCTTCTGAACAGA 59.220 40.000 0.00 0.00 32.95 3.41
2127 2344 1.486726 AGTACTCCTATGGCCAGCAAC 59.513 52.381 13.05 2.28 0.00 4.17
2139 2356 0.702902 TTCCTCCACCGAGTACTCCT 59.297 55.000 17.23 0.00 33.93 3.69
2299 2516 1.604604 TTCCTCCAAGGCAAACGAAG 58.395 50.000 0.00 0.00 34.61 3.79
2757 3040 7.849804 AATGTACAAGGCTAACAGAATACAG 57.150 36.000 0.00 0.00 0.00 2.74
2771 3054 8.642908 TGTCGACTATGATAAAATGTACAAGG 57.357 34.615 17.92 0.00 0.00 3.61
2855 3138 8.868522 TCCTAACAAACTTCTCATCAAATGAT 57.131 30.769 0.00 0.00 38.85 2.45
3254 3538 8.042515 ACATATCAAAAGCATGCAAAATAGGTT 58.957 29.630 21.98 0.00 0.00 3.50
3271 3555 7.338957 TCATTGCACAGGACATAACATATCAAA 59.661 33.333 0.00 0.00 0.00 2.69
3312 3596 5.466728 TCAAACATGAGCAAGACAACTAGAC 59.533 40.000 0.00 0.00 0.00 2.59
3402 3687 5.729974 AACAAAGTAACTCGTCCAAAGAC 57.270 39.130 0.00 0.00 39.83 3.01
3588 3883 4.862641 ACTAACTGGCAGGGAATTATGT 57.137 40.909 20.34 5.85 0.00 2.29
3617 3912 1.742761 AGCTGACCGACCAAATGATG 58.257 50.000 0.00 0.00 0.00 3.07
3639 3934 7.349598 AGTTACTGAAATATGGGAGCTCATTT 58.650 34.615 17.19 12.43 0.00 2.32
3640 3935 6.904626 AGTTACTGAAATATGGGAGCTCATT 58.095 36.000 17.19 3.47 0.00 2.57
3670 3965 1.192428 ATCCGTAAGACCCAGTGGAC 58.808 55.000 11.95 4.36 43.02 4.02
3697 3996 6.127281 CCAATTCCAATCATCATTCCAGTCAA 60.127 38.462 0.00 0.00 0.00 3.18
3708 4007 7.437793 TTTTCAAAAGCCAATTCCAATCATC 57.562 32.000 0.00 0.00 0.00 2.92
3788 4087 6.423302 AGCGAATCACAGATAATCTAAAGCTG 59.577 38.462 0.00 0.00 0.00 4.24
3885 4186 0.610174 TTGGTCCTGCAGCTGACTAG 59.390 55.000 20.43 11.80 0.00 2.57
3995 4411 3.648009 CTCAGCCAATAGGTCGATCTTC 58.352 50.000 2.08 0.00 37.19 2.87
4073 4489 4.779489 TGAGGAAAGACTGATGGAGAATGA 59.221 41.667 0.00 0.00 0.00 2.57
4197 4613 1.151810 AGGGTCAGCCTTTGGGAGA 60.152 57.895 0.00 0.00 34.45 3.71
4317 4733 2.214216 TACCGCACAGGCACCTTCT 61.214 57.895 0.00 0.00 46.52 2.85
4347 4763 9.273016 GCTCTAGAAATATTATTAACAGCACCA 57.727 33.333 0.00 0.00 0.00 4.17
4563 4983 3.023832 CCCCATAACACTTCAACCCATC 58.976 50.000 0.00 0.00 0.00 3.51
4873 7043 8.741841 TCAGAAATGAAGCATGACATTAATTCA 58.258 29.630 0.00 8.43 35.99 2.57
4883 7053 6.146601 TGTTTGTTCAGAAATGAAGCATGA 57.853 33.333 0.00 0.00 0.00 3.07
5068 7244 6.168270 AGATTCAGTAGAGTGGGCTAAATC 57.832 41.667 0.00 0.00 0.00 2.17
5270 7475 0.381801 CCTGCGGGCACATACAAATC 59.618 55.000 0.00 0.00 0.00 2.17
5311 7538 1.822613 CTTGCTCATCCTGCCGCAT 60.823 57.895 0.00 0.00 31.77 4.73
5752 9834 0.446222 AACGTCAGCAACACACACAC 59.554 50.000 0.00 0.00 0.00 3.82
5753 9835 0.445829 CAACGTCAGCAACACACACA 59.554 50.000 0.00 0.00 0.00 3.72
5754 9836 0.724549 TCAACGTCAGCAACACACAC 59.275 50.000 0.00 0.00 0.00 3.82
5755 9837 1.443802 TTCAACGTCAGCAACACACA 58.556 45.000 0.00 0.00 0.00 3.72
5756 9838 2.535934 TTTCAACGTCAGCAACACAC 57.464 45.000 0.00 0.00 0.00 3.82
5757 9839 3.623510 TGTATTTCAACGTCAGCAACACA 59.376 39.130 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.