Multiple sequence alignment - TraesCS4D01G354700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G354700 chr4D 100.000 8806 0 0 1 8806 504282260 504273455 0.000000e+00 16262.0
1 TraesCS4D01G354700 chr4B 93.602 8502 289 140 419 8806 650896518 650888158 0.000000e+00 12451.0
2 TraesCS4D01G354700 chr4B 77.606 259 49 6 137 388 650898027 650897771 1.980000e-31 148.0
3 TraesCS4D01G354700 chr4B 87.500 72 4 2 413 479 650897699 650897628 2.640000e-10 78.7
4 TraesCS4D01G354700 chr5A 95.790 6983 188 42 1859 8806 688951802 688944891 0.000000e+00 11169.0
5 TraesCS4D01G354700 chr5A 81.710 1345 118 73 171 1466 688953459 688952194 0.000000e+00 1003.0
6 TraesCS4D01G354700 chr5A 86.111 288 23 8 1461 1740 688952131 688951853 2.400000e-75 294.0
7 TraesCS4D01G354700 chrUn 100.000 391 0 0 5119 5509 479854443 479854053 0.000000e+00 723.0
8 TraesCS4D01G354700 chr3B 97.143 350 10 0 3968 4317 433639544 433639893 7.610000e-165 592.0
9 TraesCS4D01G354700 chr7D 84.848 297 39 1 6461 6751 591386719 591387015 2.400000e-75 294.0
10 TraesCS4D01G354700 chr7D 88.889 54 2 1 6761 6814 591387042 591387091 7.380000e-06 63.9
11 TraesCS4D01G354700 chr5B 81.218 197 33 4 144 338 559760343 559760537 1.180000e-33 156.0
12 TraesCS4D01G354700 chr6B 77.830 212 36 9 140 346 702925499 702925294 4.320000e-23 121.0
13 TraesCS4D01G354700 chr6B 86.842 76 9 1 140 215 702891730 702891656 5.670000e-12 84.2
14 TraesCS4D01G354700 chr6B 86.842 76 9 1 140 215 702900491 702900417 5.670000e-12 84.2
15 TraesCS4D01G354700 chr6B 85.526 76 10 1 140 215 702955502 702955428 2.640000e-10 78.7
16 TraesCS4D01G354700 chr1A 78.392 199 30 9 136 331 498068211 498068399 5.590000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G354700 chr4D 504273455 504282260 8805 True 16262.000000 16262 100.000000 1 8806 1 chr4D.!!$R1 8805
1 TraesCS4D01G354700 chr4B 650888158 650898027 9869 True 4225.900000 12451 86.236000 137 8806 3 chr4B.!!$R1 8669
2 TraesCS4D01G354700 chr5A 688944891 688953459 8568 True 4155.333333 11169 87.870333 171 8806 3 chr5A.!!$R1 8635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.031178 AAGTTTGCTTTGCTGAGGCG 59.969 50.000 0.00 0.00 42.25 5.52 F
90 91 0.095417 GGCGACAACGAGATTTGCTC 59.905 55.000 0.00 0.00 42.66 4.26 F
114 115 0.096281 CGCGCCGTCACATGTATTTT 59.904 50.000 0.00 0.00 0.00 1.82 F
571 1815 0.105913 CCACCCTACCTCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71 F
791 2053 0.106217 CTCTCTCTCCTCCACCTCCC 60.106 65.000 0.00 0.00 0.00 4.30 F
1857 3259 0.106918 AGGGTTTCAGGCGTGTTTCA 60.107 50.000 6.26 0.00 0.00 2.69 F
2391 3810 1.084370 AGCGAGTTCTATGCAACCGC 61.084 55.000 11.65 11.65 41.91 5.68 F
4090 5536 0.463295 CACATGCTGAGCGGGATTCT 60.463 55.000 0.00 0.00 0.00 2.40 F
4150 5596 0.453793 AGTCATCTCGGCAAGAGTCG 59.546 55.000 8.07 0.00 46.86 4.18 F
4698 6144 1.005924 GGGAAAAGGGCAGGATTCTCA 59.994 52.381 0.00 0.00 0.00 3.27 F
6435 7881 0.397816 AGCTCCCTTGACGAGGCTAT 60.398 55.000 2.75 0.00 44.85 2.97 F
6986 8435 2.434428 CTTGCACTCTGAAGCCTGAAT 58.566 47.619 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 2727 0.105593 ATGGCCAGATCACGCAGTAG 59.894 55.000 13.05 0.00 41.61 2.57 R
1830 3226 0.538287 GCCTGAAACCCTGAGCAACT 60.538 55.000 0.00 0.00 0.00 3.16 R
1852 3254 6.091713 ACCAGTAAATACATGTAGCGTGAAAC 59.908 38.462 11.91 3.08 0.00 2.78 R
2411 3830 3.067106 GGATCATATACACAAGCACCCG 58.933 50.000 0.00 0.00 0.00 5.28 R
2419 3838 7.669089 TTCAGGTTACAGGATCATATACACA 57.331 36.000 0.00 0.00 0.00 3.72 R
3407 4827 5.010820 TGTGATGATCAAAGGCAAATGAACA 59.989 36.000 0.00 0.00 33.68 3.18 R
4150 5596 1.464997 CTGCTTAACTCTGGCCGAAAC 59.535 52.381 0.00 0.00 0.00 2.78 R
6037 7483 0.033011 GCAGGACAGAGACCTCCCTA 60.033 60.000 0.00 0.00 35.35 3.53 R
6038 7484 1.305718 GCAGGACAGAGACCTCCCT 60.306 63.158 0.00 0.00 35.35 4.20 R
6454 7900 0.527385 CAGACTCTAGCAGCGCCTTC 60.527 60.000 2.29 0.00 0.00 3.46 R
7724 9182 1.065851 GCCTCTACTTCTGCGTACTCC 59.934 57.143 0.00 0.00 0.00 3.85 R
8773 10239 1.570813 TGAATACGCCAGCTCAATCG 58.429 50.000 0.00 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.304110 TCTACATCGACGATTTATTGGCC 58.696 43.478 7.83 0.00 0.00 5.36
23 24 1.864711 ACATCGACGATTTATTGGCCG 59.135 47.619 7.83 0.00 0.00 6.13
24 25 1.864711 CATCGACGATTTATTGGCCGT 59.135 47.619 7.83 0.00 38.01 5.68
25 26 1.563111 TCGACGATTTATTGGCCGTC 58.437 50.000 0.00 0.00 45.34 4.79
30 31 4.287238 ACGATTTATTGGCCGTCATTTC 57.713 40.909 0.00 0.00 0.00 2.17
31 32 3.945285 ACGATTTATTGGCCGTCATTTCT 59.055 39.130 0.00 0.00 0.00 2.52
32 33 5.120399 ACGATTTATTGGCCGTCATTTCTA 58.880 37.500 0.00 0.00 0.00 2.10
33 34 5.007332 ACGATTTATTGGCCGTCATTTCTAC 59.993 40.000 0.00 0.00 0.00 2.59
34 35 5.007234 CGATTTATTGGCCGTCATTTCTACA 59.993 40.000 0.00 0.00 0.00 2.74
35 36 6.457663 CGATTTATTGGCCGTCATTTCTACAA 60.458 38.462 0.00 0.00 0.00 2.41
36 37 5.811399 TTATTGGCCGTCATTTCTACAAG 57.189 39.130 0.00 0.00 0.00 3.16
37 38 1.448985 TGGCCGTCATTTCTACAAGC 58.551 50.000 0.00 0.00 0.00 4.01
38 39 1.003118 TGGCCGTCATTTCTACAAGCT 59.997 47.619 0.00 0.00 0.00 3.74
39 40 1.666189 GGCCGTCATTTCTACAAGCTC 59.334 52.381 0.00 0.00 0.00 4.09
40 41 1.666189 GCCGTCATTTCTACAAGCTCC 59.334 52.381 0.00 0.00 0.00 4.70
41 42 2.678190 GCCGTCATTTCTACAAGCTCCT 60.678 50.000 0.00 0.00 0.00 3.69
42 43 2.932614 CCGTCATTTCTACAAGCTCCTG 59.067 50.000 0.00 0.00 0.00 3.86
43 44 2.932614 CGTCATTTCTACAAGCTCCTGG 59.067 50.000 0.00 0.00 0.00 4.45
44 45 3.274288 GTCATTTCTACAAGCTCCTGGG 58.726 50.000 0.00 0.00 0.00 4.45
45 46 2.912956 TCATTTCTACAAGCTCCTGGGT 59.087 45.455 0.00 0.00 0.00 4.51
46 47 3.330701 TCATTTCTACAAGCTCCTGGGTT 59.669 43.478 0.00 0.00 35.89 4.11
47 48 3.876309 TTTCTACAAGCTCCTGGGTTT 57.124 42.857 0.00 0.00 32.86 3.27
48 49 4.986054 TTTCTACAAGCTCCTGGGTTTA 57.014 40.909 0.00 0.00 32.86 2.01
49 50 4.986054 TTCTACAAGCTCCTGGGTTTAA 57.014 40.909 0.00 0.00 32.86 1.52
50 51 4.986054 TCTACAAGCTCCTGGGTTTAAA 57.014 40.909 0.00 0.00 32.86 1.52
51 52 5.313280 TCTACAAGCTCCTGGGTTTAAAA 57.687 39.130 0.00 0.00 32.86 1.52
52 53 5.313712 TCTACAAGCTCCTGGGTTTAAAAG 58.686 41.667 0.00 0.00 32.86 2.27
53 54 3.910989 ACAAGCTCCTGGGTTTAAAAGT 58.089 40.909 0.00 0.00 32.86 2.66
54 55 4.286707 ACAAGCTCCTGGGTTTAAAAGTT 58.713 39.130 0.00 0.00 32.86 2.66
55 56 4.714802 ACAAGCTCCTGGGTTTAAAAGTTT 59.285 37.500 0.00 0.00 32.86 2.66
56 57 4.937201 AGCTCCTGGGTTTAAAAGTTTG 57.063 40.909 0.00 0.00 0.00 2.93
57 58 3.069586 AGCTCCTGGGTTTAAAAGTTTGC 59.930 43.478 0.00 0.00 0.00 3.68
58 59 3.069586 GCTCCTGGGTTTAAAAGTTTGCT 59.930 43.478 0.00 0.00 0.00 3.91
59 60 4.442893 GCTCCTGGGTTTAAAAGTTTGCTT 60.443 41.667 0.00 0.00 36.30 3.91
60 61 5.670485 CTCCTGGGTTTAAAAGTTTGCTTT 58.330 37.500 0.00 0.00 46.01 3.51
61 62 5.423886 TCCTGGGTTTAAAAGTTTGCTTTG 58.576 37.500 0.00 0.00 43.52 2.77
62 63 4.035091 CCTGGGTTTAAAAGTTTGCTTTGC 59.965 41.667 0.00 0.00 43.52 3.68
63 64 4.837972 TGGGTTTAAAAGTTTGCTTTGCT 58.162 34.783 0.00 0.00 43.52 3.91
64 65 4.633565 TGGGTTTAAAAGTTTGCTTTGCTG 59.366 37.500 0.00 0.00 43.52 4.41
65 66 4.873259 GGGTTTAAAAGTTTGCTTTGCTGA 59.127 37.500 0.00 0.00 43.52 4.26
66 67 5.006649 GGGTTTAAAAGTTTGCTTTGCTGAG 59.993 40.000 0.00 0.00 43.52 3.35
67 68 5.006649 GGTTTAAAAGTTTGCTTTGCTGAGG 59.993 40.000 0.00 0.00 43.52 3.86
68 69 2.229675 AAAGTTTGCTTTGCTGAGGC 57.770 45.000 0.00 0.00 42.78 4.70
69 70 0.031178 AAGTTTGCTTTGCTGAGGCG 59.969 50.000 0.00 0.00 42.25 5.52
70 71 1.372128 GTTTGCTTTGCTGAGGCGG 60.372 57.895 0.00 0.00 42.25 6.13
71 72 2.563798 TTTGCTTTGCTGAGGCGGG 61.564 57.895 0.00 0.00 42.25 6.13
84 85 4.814294 GCGGGGCGACAACGAGAT 62.814 66.667 8.90 0.00 42.66 2.75
85 86 2.125673 CGGGGCGACAACGAGATT 60.126 61.111 0.00 0.00 42.66 2.40
86 87 1.740296 CGGGGCGACAACGAGATTT 60.740 57.895 0.00 0.00 42.66 2.17
87 88 1.794222 GGGGCGACAACGAGATTTG 59.206 57.895 0.00 0.00 42.66 2.32
88 89 1.134694 GGGCGACAACGAGATTTGC 59.865 57.895 0.00 0.00 42.66 3.68
89 90 1.298859 GGGCGACAACGAGATTTGCT 61.299 55.000 0.00 0.00 42.66 3.91
90 91 0.095417 GGCGACAACGAGATTTGCTC 59.905 55.000 0.00 0.00 42.66 4.26
91 92 0.790207 GCGACAACGAGATTTGCTCA 59.210 50.000 0.00 0.00 44.15 4.26
92 93 1.462541 GCGACAACGAGATTTGCTCAC 60.463 52.381 0.00 0.00 44.15 3.51
93 94 1.201704 CGACAACGAGATTTGCTCACG 60.202 52.381 0.00 0.00 44.15 4.35
94 95 2.058798 GACAACGAGATTTGCTCACGA 58.941 47.619 0.00 0.00 44.15 4.35
95 96 1.792949 ACAACGAGATTTGCTCACGAC 59.207 47.619 0.00 0.00 44.15 4.34
96 97 1.060713 AACGAGATTTGCTCACGACG 58.939 50.000 0.00 0.00 44.15 5.12
97 98 1.341802 CGAGATTTGCTCACGACGC 59.658 57.895 0.00 0.00 44.15 5.19
98 99 1.341802 GAGATTTGCTCACGACGCG 59.658 57.895 3.53 3.53 43.38 6.01
99 100 2.276058 GATTTGCTCACGACGCGC 60.276 61.111 5.73 0.00 0.00 6.86
100 101 3.702334 GATTTGCTCACGACGCGCC 62.702 63.158 5.73 0.00 0.00 6.53
111 112 2.183300 ACGCGCCGTCACATGTAT 59.817 55.556 5.73 0.00 33.69 2.29
112 113 1.447140 ACGCGCCGTCACATGTATT 60.447 52.632 5.73 0.00 33.69 1.89
113 114 1.017177 ACGCGCCGTCACATGTATTT 61.017 50.000 5.73 0.00 33.69 1.40
114 115 0.096281 CGCGCCGTCACATGTATTTT 59.904 50.000 0.00 0.00 0.00 1.82
115 116 1.465020 CGCGCCGTCACATGTATTTTT 60.465 47.619 0.00 0.00 0.00 1.94
180 181 6.105397 ACAAATCTGACATTTTTCATGGCT 57.895 33.333 0.00 0.00 0.00 4.75
182 183 7.092716 ACAAATCTGACATTTTTCATGGCTAC 58.907 34.615 0.00 0.00 0.00 3.58
191 192 9.683069 GACATTTTTCATGGCTACTTATATTGG 57.317 33.333 0.00 0.00 0.00 3.16
203 204 2.760634 TATATTGGCGCGATGATGGT 57.239 45.000 12.10 0.00 0.00 3.55
204 205 2.760634 ATATTGGCGCGATGATGGTA 57.239 45.000 12.10 0.00 0.00 3.25
212 213 4.219033 GGCGCGATGATGGTAAAATTTAG 58.781 43.478 12.10 0.00 0.00 1.85
217 218 6.745450 CGCGATGATGGTAAAATTTAGTTTGT 59.255 34.615 0.00 0.00 0.00 2.83
236 237 3.342719 TGTAAGCATCGCAATTTCCTGA 58.657 40.909 0.00 0.00 0.00 3.86
239 240 1.741706 AGCATCGCAATTTCCTGACAG 59.258 47.619 0.00 0.00 0.00 3.51
245 246 4.797471 TCGCAATTTCCTGACAGAAAATG 58.203 39.130 3.32 7.39 39.11 2.32
247 248 4.855388 CGCAATTTCCTGACAGAAAATGAG 59.145 41.667 3.32 4.79 38.41 2.90
253 259 2.354103 CCTGACAGAAAATGAGCCGAGA 60.354 50.000 3.32 0.00 0.00 4.04
255 261 1.656095 GACAGAAAATGAGCCGAGACG 59.344 52.381 0.00 0.00 0.00 4.18
270 276 2.128035 GAGACGGATTTACCATGCTCG 58.872 52.381 0.00 0.00 38.90 5.03
272 278 0.178068 ACGGATTTACCATGCTCGCT 59.822 50.000 0.00 0.00 38.90 4.93
290 300 3.932710 TCGCTAACTAACTTGCAATCCTG 59.067 43.478 0.00 0.00 0.00 3.86
347 358 2.673368 GCCATCCTAAAAGTCTGACGTG 59.327 50.000 0.00 0.00 0.00 4.49
364 375 1.067974 CGTGTGCTGGATATTCGGGTA 59.932 52.381 0.00 0.00 0.00 3.69
365 376 2.482316 CGTGTGCTGGATATTCGGGTAA 60.482 50.000 0.00 0.00 0.00 2.85
367 378 4.134563 GTGTGCTGGATATTCGGGTAAAT 58.865 43.478 0.00 0.00 0.00 1.40
369 380 5.761234 GTGTGCTGGATATTCGGGTAAATAA 59.239 40.000 0.00 0.00 0.00 1.40
372 383 7.012894 TGTGCTGGATATTCGGGTAAATAAAAG 59.987 37.037 0.00 0.00 0.00 2.27
385 402 1.194218 ATAAAAGCACCCACCCATGC 58.806 50.000 0.00 0.00 42.39 4.06
389 406 2.830370 GCACCCACCCATGCTAGC 60.830 66.667 8.10 8.10 38.84 3.42
390 407 2.676608 CACCCACCCATGCTAGCA 59.323 61.111 21.85 21.85 0.00 3.49
391 408 1.452651 CACCCACCCATGCTAGCAG 60.453 63.158 23.89 12.17 0.00 4.24
393 410 2.898840 CCACCCATGCTAGCAGCG 60.899 66.667 23.89 16.03 46.26 5.18
394 411 2.898840 CACCCATGCTAGCAGCGG 60.899 66.667 23.89 24.25 46.26 5.52
395 412 3.083349 ACCCATGCTAGCAGCGGA 61.083 61.111 30.13 6.99 46.26 5.54
396 413 2.590007 CCCATGCTAGCAGCGGAC 60.590 66.667 29.03 0.00 46.26 4.79
443 1682 2.291457 AAAAACGCAAAGCCAGCCGT 62.291 50.000 0.00 0.00 0.00 5.68
462 1706 1.188219 TGGTGTGCTGGAGAGGAGAC 61.188 60.000 0.00 0.00 33.49 3.36
474 1718 1.211949 AGAGGAGACGAGGAGAGAAGG 59.788 57.143 0.00 0.00 0.00 3.46
549 1793 4.410400 GAAGAGGCCCCACCGGTG 62.410 72.222 28.26 28.26 46.52 4.94
571 1815 0.105913 CCACCCTACCTCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
572 1816 0.105913 CACCCTACCTCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
573 1817 1.298157 ACCCTACCTCTCCTCCTCCC 61.298 65.000 0.00 0.00 0.00 4.30
574 1818 1.002242 CCCTACCTCTCCTCCTCCCT 61.002 65.000 0.00 0.00 0.00 4.20
575 1819 0.481128 CCTACCTCTCCTCCTCCCTC 59.519 65.000 0.00 0.00 0.00 4.30
576 1820 0.481128 CTACCTCTCCTCCTCCCTCC 59.519 65.000 0.00 0.00 0.00 4.30
577 1821 1.000041 TACCTCTCCTCCTCCCTCCC 61.000 65.000 0.00 0.00 0.00 4.30
770 2032 0.341609 CTTTCTCTCCCCCTCCTCCT 59.658 60.000 0.00 0.00 0.00 3.69
773 2035 2.018086 CTCTCCCCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
782 2044 1.522900 CTCCTCCTCCTCTCTCTCCT 58.477 60.000 0.00 0.00 0.00 3.69
785 2047 1.221635 CTCCTCCTCTCTCTCCTCCA 58.778 60.000 0.00 0.00 0.00 3.86
791 2053 0.106217 CTCTCTCTCCTCCACCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
793 2055 2.443016 CTCTCCTCCACCTCCCCG 60.443 72.222 0.00 0.00 0.00 5.73
794 2056 4.779733 TCTCCTCCACCTCCCCGC 62.780 72.222 0.00 0.00 0.00 6.13
867 2129 1.475403 GAGTACACTAGCCAGCAGGA 58.525 55.000 0.00 0.00 36.89 3.86
871 2144 1.143620 CACTAGCCAGCAGGAGAGC 59.856 63.158 0.00 0.00 36.89 4.09
878 2157 3.082701 AGCAGGAGAGCAGGAGGC 61.083 66.667 0.00 0.00 45.30 4.70
903 2182 2.409870 CCCACCAAATCTGCTCCGC 61.410 63.158 0.00 0.00 0.00 5.54
949 2243 2.516695 TAGGCGGCCGTATCGACA 60.517 61.111 28.70 2.13 38.26 4.35
950 2244 2.459421 CTAGGCGGCCGTATCGACAG 62.459 65.000 28.70 10.51 38.26 3.51
952 2246 3.896133 GCGGCCGTATCGACAGGA 61.896 66.667 28.70 0.00 0.00 3.86
955 2249 1.826921 GGCCGTATCGACAGGAGGA 60.827 63.158 6.81 0.00 0.00 3.71
956 2250 1.179814 GGCCGTATCGACAGGAGGAT 61.180 60.000 6.81 0.00 0.00 3.24
957 2251 0.241481 GCCGTATCGACAGGAGGATC 59.759 60.000 6.81 0.00 0.00 3.36
958 2252 0.517755 CCGTATCGACAGGAGGATCG 59.482 60.000 0.00 0.00 39.72 3.69
1123 2421 2.983879 CGCCCAGATTCCCCACCTT 61.984 63.158 0.00 0.00 0.00 3.50
1127 2428 1.214305 CCAGATTCCCCACCTTCCCA 61.214 60.000 0.00 0.00 0.00 4.37
1130 2431 2.224805 GATTCCCCACCTTCCCACCC 62.225 65.000 0.00 0.00 0.00 4.61
1139 2440 0.837940 CCTTCCCACCCTAGCTTACC 59.162 60.000 0.00 0.00 0.00 2.85
1140 2441 0.464452 CTTCCCACCCTAGCTTACCG 59.536 60.000 0.00 0.00 0.00 4.02
1141 2442 0.252375 TTCCCACCCTAGCTTACCGT 60.252 55.000 0.00 0.00 0.00 4.83
1142 2443 0.252375 TCCCACCCTAGCTTACCGTT 60.252 55.000 0.00 0.00 0.00 4.44
1148 2449 3.950395 CACCCTAGCTTACCGTTACTAGT 59.050 47.826 0.00 0.00 32.03 2.57
1247 2548 3.492309 CGTTGCTCCTCTGCTTGATCTAT 60.492 47.826 0.00 0.00 0.00 1.98
1248 2549 4.057432 GTTGCTCCTCTGCTTGATCTATC 58.943 47.826 0.00 0.00 0.00 2.08
1249 2550 3.574749 TGCTCCTCTGCTTGATCTATCT 58.425 45.455 0.00 0.00 0.00 1.98
1250 2551 4.734266 TGCTCCTCTGCTTGATCTATCTA 58.266 43.478 0.00 0.00 0.00 1.98
1257 2558 6.092122 CCTCTGCTTGATCTATCTACGAGTAG 59.908 46.154 3.98 3.98 34.56 2.57
1285 2596 1.536073 TAGAGCAAGCCGCACTCACT 61.536 55.000 9.81 0.00 46.13 3.41
1286 2597 2.667536 AGCAAGCCGCACTCACTG 60.668 61.111 0.00 0.00 46.13 3.66
1287 2598 4.395583 GCAAGCCGCACTCACTGC 62.396 66.667 0.00 0.00 43.21 4.40
1294 2605 2.628106 GCACTCACTGCACACACG 59.372 61.111 0.00 0.00 46.29 4.49
1297 2608 3.349006 CTCACTGCACACACGCCC 61.349 66.667 0.00 0.00 0.00 6.13
1340 2651 6.545298 AGCTGGAGATTTCATTTCATTCCTAC 59.455 38.462 0.00 0.00 0.00 3.18
1343 2654 6.830324 TGGAGATTTCATTTCATTCCTACCTG 59.170 38.462 0.00 0.00 0.00 4.00
1347 2658 3.889815 TCATTTCATTCCTACCTGGCTG 58.110 45.455 0.00 0.00 35.26 4.85
1348 2659 3.266772 TCATTTCATTCCTACCTGGCTGT 59.733 43.478 0.00 0.00 35.26 4.40
1349 2660 2.787473 TTCATTCCTACCTGGCTGTG 57.213 50.000 0.00 0.00 35.26 3.66
1350 2661 0.253044 TCATTCCTACCTGGCTGTGC 59.747 55.000 0.00 0.00 35.26 4.57
1360 2671 4.957164 GGCTGTGCCCTAACCTAC 57.043 61.111 0.00 0.00 44.06 3.18
1363 2674 1.559065 GCTGTGCCCTAACCTACCCA 61.559 60.000 0.00 0.00 0.00 4.51
1364 2675 0.252197 CTGTGCCCTAACCTACCCAC 59.748 60.000 0.00 0.00 0.00 4.61
1365 2676 0.178885 TGTGCCCTAACCTACCCACT 60.179 55.000 0.00 0.00 0.00 4.00
1366 2677 1.079156 TGTGCCCTAACCTACCCACTA 59.921 52.381 0.00 0.00 0.00 2.74
1379 2699 5.062528 CCTACCCACTACTACTACTACTGC 58.937 50.000 0.00 0.00 0.00 4.40
1405 2727 7.064253 CACTAGTAGTAACCTGTGTTTAATGGC 59.936 40.741 1.57 0.00 35.87 4.40
1407 2729 7.248743 AGTAGTAACCTGTGTTTAATGGCTA 57.751 36.000 0.00 0.00 35.87 3.93
1437 2759 2.988148 TCTGGCCATTATGATGATCCCA 59.012 45.455 5.51 2.33 35.16 4.37
1439 2761 2.086869 GGCCATTATGATGATCCCACG 58.913 52.381 0.00 0.00 35.16 4.94
1446 2768 3.862877 ATGATGATCCCACGATCCAAA 57.137 42.857 0.00 0.00 43.82 3.28
1459 2781 2.711542 GATCCAAACCTACCTGTGTGG 58.288 52.381 0.00 0.00 43.86 4.17
1528 2917 0.386838 GCATGGGCAATTCCTACTGC 59.613 55.000 0.00 0.00 40.72 4.40
1551 2940 3.376546 CAGCCAATTGCCTCTTTCTAGTC 59.623 47.826 0.00 0.00 42.71 2.59
1617 3007 6.183360 GGTTGGTGTTTCACAGTTATTCTGAA 60.183 38.462 1.79 0.00 46.27 3.02
1646 3042 9.175312 TCTCCTATTAATAGATAGGTTACTGCG 57.825 37.037 21.75 2.85 45.85 5.18
1648 3044 7.892241 TCCTATTAATAGATAGGTTACTGCGGT 59.108 37.037 21.75 2.42 45.85 5.68
1649 3045 7.974501 CCTATTAATAGATAGGTTACTGCGGTG 59.025 40.741 21.75 0.00 42.42 4.94
1669 3065 2.955660 TGTGGTGTTCCATTTCTCCAAC 59.044 45.455 0.00 0.00 46.20 3.77
1701 3097 1.177401 GAAGAAATGCCAGTGACCCC 58.823 55.000 0.00 0.00 0.00 4.95
1713 3109 1.475682 AGTGACCCCGTCTTACGATTC 59.524 52.381 0.15 0.00 46.05 2.52
1720 3116 5.354767 ACCCCGTCTTACGATTCTTATTTC 58.645 41.667 0.15 0.00 46.05 2.17
1725 3121 6.750501 CCGTCTTACGATTCTTATTTCTGTCA 59.249 38.462 0.15 0.00 46.05 3.58
1742 3138 7.509141 TTCTGTCAGAAATAGCATTCAAACA 57.491 32.000 13.00 0.00 29.99 2.83
1743 3139 7.509141 TCTGTCAGAAATAGCATTCAAACAA 57.491 32.000 0.00 0.00 30.60 2.83
1744 3140 7.362662 TCTGTCAGAAATAGCATTCAAACAAC 58.637 34.615 0.00 0.00 30.60 3.32
1745 3141 7.013178 TCTGTCAGAAATAGCATTCAAACAACA 59.987 33.333 0.00 0.00 30.60 3.33
1747 3143 7.809331 TGTCAGAAATAGCATTCAAACAACATC 59.191 33.333 0.00 0.00 0.00 3.06
1748 3144 7.274250 GTCAGAAATAGCATTCAAACAACATCC 59.726 37.037 0.00 0.00 0.00 3.51
1749 3145 7.177216 TCAGAAATAGCATTCAAACAACATCCT 59.823 33.333 0.00 0.00 0.00 3.24
1750 3146 7.816031 CAGAAATAGCATTCAAACAACATCCTT 59.184 33.333 0.00 0.00 0.00 3.36
1751 3147 9.023962 AGAAATAGCATTCAAACAACATCCTTA 57.976 29.630 0.00 0.00 0.00 2.69
1752 3148 9.807649 GAAATAGCATTCAAACAACATCCTTAT 57.192 29.630 0.00 0.00 0.00 1.73
1760 3156 6.774673 TCAAACAACATCCTTATACTCCACA 58.225 36.000 0.00 0.00 0.00 4.17
1763 3159 5.175859 ACAACATCCTTATACTCCACAACG 58.824 41.667 0.00 0.00 0.00 4.10
1772 3168 2.034999 TCCACAACGGGGGAATGC 59.965 61.111 0.00 0.00 34.36 3.56
1774 3170 1.682005 CCACAACGGGGGAATGCAT 60.682 57.895 0.00 0.00 0.00 3.96
1791 3187 3.411446 TGCATCGAACCTGTGAAAATCT 58.589 40.909 0.00 0.00 0.00 2.40
1794 3190 1.798223 TCGAACCTGTGAAAATCTGCG 59.202 47.619 0.00 0.00 0.00 5.18
1795 3191 1.798223 CGAACCTGTGAAAATCTGCGA 59.202 47.619 0.00 0.00 0.00 5.10
1796 3192 2.416547 CGAACCTGTGAAAATCTGCGAT 59.583 45.455 0.00 0.00 0.00 4.58
1801 3197 4.759693 ACCTGTGAAAATCTGCGATAACAA 59.240 37.500 0.00 0.00 0.00 2.83
1807 3203 4.842139 AAATCTGCGATAACAACGACTC 57.158 40.909 0.00 0.00 0.00 3.36
1811 3207 3.102276 CTGCGATAACAACGACTCTCTC 58.898 50.000 0.00 0.00 0.00 3.20
1812 3208 2.747989 TGCGATAACAACGACTCTCTCT 59.252 45.455 0.00 0.00 0.00 3.10
1818 3214 6.036300 CGATAACAACGACTCTCTCTACTTCT 59.964 42.308 0.00 0.00 0.00 2.85
1820 3216 5.616488 ACAACGACTCTCTCTACTTCTTC 57.384 43.478 0.00 0.00 0.00 2.87
1823 3219 6.935771 ACAACGACTCTCTCTACTTCTTCTTA 59.064 38.462 0.00 0.00 0.00 2.10
1824 3220 7.608761 ACAACGACTCTCTCTACTTCTTCTTAT 59.391 37.037 0.00 0.00 0.00 1.73
1826 3222 7.981142 ACGACTCTCTCTACTTCTTCTTATTG 58.019 38.462 0.00 0.00 0.00 1.90
1850 3252 1.600636 TTGCTCAGGGTTTCAGGCG 60.601 57.895 0.00 0.00 0.00 5.52
1852 3254 2.328099 GCTCAGGGTTTCAGGCGTG 61.328 63.158 0.00 0.00 0.00 5.34
1857 3259 0.106918 AGGGTTTCAGGCGTGTTTCA 60.107 50.000 6.26 0.00 0.00 2.69
1881 3294 6.959311 CACGCTACATGTATTTACTGGTTTTC 59.041 38.462 5.91 0.00 0.00 2.29
2116 3531 6.959639 ACAAGATTGTTGTTTCTGTGGTAT 57.040 33.333 0.00 0.00 38.47 2.73
2134 3549 6.271159 TGTGGTATGTATGGGTATTCATAGCA 59.729 38.462 11.92 11.92 44.97 3.49
2198 3617 7.231519 TCTCACCGATATGGATGTATGGATATC 59.768 40.741 0.00 0.00 42.00 1.63
2381 3800 2.543777 TTTGCAGGTAAGCGAGTTCT 57.456 45.000 0.00 0.00 37.31 3.01
2382 3801 3.671008 TTTGCAGGTAAGCGAGTTCTA 57.329 42.857 0.00 0.00 37.31 2.10
2391 3810 1.084370 AGCGAGTTCTATGCAACCGC 61.084 55.000 11.65 11.65 41.91 5.68
2411 3830 7.709269 ACCGCTTCCTTTTTAAAGATTTTTC 57.291 32.000 3.84 0.00 38.28 2.29
2419 3838 6.481976 CCTTTTTAAAGATTTTTCGGGTGCTT 59.518 34.615 3.84 0.00 38.28 3.91
2468 3887 2.139118 GTGCCAACTCACTCAACTCTC 58.861 52.381 0.00 0.00 34.29 3.20
2849 4268 1.502231 CAACAGGAGTGTCCGTTCTG 58.498 55.000 0.00 0.00 42.75 3.02
2939 4358 8.579863 CAGAACAATTTTCTCCATCCTAAGTTT 58.420 33.333 1.40 0.00 0.00 2.66
3002 4422 8.638685 ATGCATGCTTTGATTTATGTTTCTAC 57.361 30.769 20.33 0.00 0.00 2.59
3159 4579 7.397476 TCTGGTGCCTATAGATATCGAGAAATT 59.603 37.037 0.00 0.00 0.00 1.82
3250 4670 5.299148 TCTTTTCCATGCTTTTGTTCCATG 58.701 37.500 0.00 0.00 36.87 3.66
3251 4671 2.747396 TCCATGCTTTTGTTCCATGC 57.253 45.000 0.00 0.00 36.04 4.06
3252 4672 2.250031 TCCATGCTTTTGTTCCATGCT 58.750 42.857 0.00 0.00 36.04 3.79
3255 4675 4.282957 TCCATGCTTTTGTTCCATGCTTTA 59.717 37.500 0.00 0.00 36.04 1.85
3256 4676 4.996122 CCATGCTTTTGTTCCATGCTTTAA 59.004 37.500 0.00 0.00 36.04 1.52
3257 4677 5.469421 CCATGCTTTTGTTCCATGCTTTAAA 59.531 36.000 0.00 0.00 36.04 1.52
3258 4678 6.149807 CCATGCTTTTGTTCCATGCTTTAAAT 59.850 34.615 0.00 0.00 36.04 1.40
3259 4679 7.333921 CCATGCTTTTGTTCCATGCTTTAAATA 59.666 33.333 0.00 0.00 36.04 1.40
3262 4682 8.093307 TGCTTTTGTTCCATGCTTTAAATATCA 58.907 29.630 0.00 0.00 0.00 2.15
3263 4683 8.382875 GCTTTTGTTCCATGCTTTAAATATCAC 58.617 33.333 0.00 0.00 0.00 3.06
3265 4685 9.770097 TTTTGTTCCATGCTTTAAATATCACAA 57.230 25.926 0.00 0.00 0.00 3.33
3266 4686 8.984891 TTGTTCCATGCTTTAAATATCACAAG 57.015 30.769 0.00 0.00 0.00 3.16
3268 4688 8.801299 TGTTCCATGCTTTAAATATCACAAGAA 58.199 29.630 0.00 0.00 0.00 2.52
3269 4689 9.638239 GTTCCATGCTTTAAATATCACAAGAAA 57.362 29.630 0.00 0.00 0.00 2.52
3367 4787 9.796180 TGAAATGAAAGAAAATTCCAATCCATT 57.204 25.926 0.00 0.00 0.00 3.16
3406 4826 4.633126 TGCAGCTAATAGCAGACTTCAAAG 59.367 41.667 15.28 0.00 45.56 2.77
3407 4827 4.633565 GCAGCTAATAGCAGACTTCAAAGT 59.366 41.667 15.28 0.00 45.56 2.66
3408 4828 5.447010 GCAGCTAATAGCAGACTTCAAAGTG 60.447 44.000 15.28 0.52 45.56 3.16
3410 4830 6.148480 CAGCTAATAGCAGACTTCAAAGTGTT 59.852 38.462 15.28 0.00 45.56 3.32
3411 4831 6.370166 AGCTAATAGCAGACTTCAAAGTGTTC 59.630 38.462 15.28 0.00 45.56 3.18
3419 4846 4.646492 AGACTTCAAAGTGTTCATTTGCCT 59.354 37.500 0.00 0.00 39.88 4.75
3437 4864 5.190992 TGCCTTTGATCATCACATTATGC 57.809 39.130 0.00 0.00 0.00 3.14
3522 4961 6.207417 GCTGTGGCTCCATGTGTATATAATTT 59.793 38.462 0.00 0.00 35.22 1.82
3757 5203 5.740513 GCAGGATTCAGGTAGTTCCTATGTC 60.741 48.000 0.00 0.00 46.24 3.06
3850 5296 2.128771 TGCTGCAAGGAAATACTCCC 57.871 50.000 0.00 0.00 46.81 4.30
4090 5536 0.463295 CACATGCTGAGCGGGATTCT 60.463 55.000 0.00 0.00 0.00 2.40
4150 5596 0.453793 AGTCATCTCGGCAAGAGTCG 59.546 55.000 8.07 0.00 46.86 4.18
4357 5803 5.544176 ACTGGAAGAGACCATAGAAGAACAA 59.456 40.000 0.00 0.00 39.34 2.83
4441 5887 6.712547 AGAATGGGTTGTTAGTCAAAGAAGAG 59.287 38.462 0.00 0.00 37.81 2.85
4483 5929 9.688592 AAACTGTCAATGAAAGAAGATGAAATC 57.311 29.630 7.55 0.00 46.04 2.17
4698 6144 1.005924 GGGAAAAGGGCAGGATTCTCA 59.994 52.381 0.00 0.00 0.00 3.27
4774 6220 5.244178 TCAACTGGAAGAGGAACTTAGAGAC 59.756 44.000 0.00 0.00 41.55 3.36
5112 6558 1.709147 AATGATGACTTGCGGCGCTC 61.709 55.000 33.26 22.18 0.00 5.03
5509 6955 5.864474 AGATAAAGTAGAGCGACAACAAGTG 59.136 40.000 0.00 0.00 0.00 3.16
5792 7238 7.074653 TGTAAAACAGTGGAGTTCCTAGAAT 57.925 36.000 0.00 0.00 36.82 2.40
5947 7393 7.437748 AGATCGAGAAAGAAAAGACTCTTGAA 58.562 34.615 0.00 0.00 35.79 2.69
6037 7483 2.742428 ATGCCACAGTAGATGCCATT 57.258 45.000 0.00 0.00 0.00 3.16
6038 7484 3.862877 ATGCCACAGTAGATGCCATTA 57.137 42.857 0.00 0.00 0.00 1.90
6181 7627 6.873605 CCAAGATTAAAGGTTTGGTTGATTCC 59.126 38.462 0.00 0.00 36.25 3.01
6250 7696 7.466996 GCTGAACATATGAAGAAGTTGATGGAG 60.467 40.741 10.38 0.00 0.00 3.86
6251 7697 6.825213 TGAACATATGAAGAAGTTGATGGAGG 59.175 38.462 10.38 0.00 0.00 4.30
6271 7717 4.801164 AGGCTGCTAAATCCAATGAAGAT 58.199 39.130 0.00 0.00 0.00 2.40
6435 7881 0.397816 AGCTCCCTTGACGAGGCTAT 60.398 55.000 2.75 0.00 44.85 2.97
6454 7900 6.936335 AGGCTATGTTTGAAAAGGGAAAATTG 59.064 34.615 0.00 0.00 0.00 2.32
6877 8326 6.493115 TCAGGAGATTGGAGATTCTACAGATC 59.507 42.308 0.00 5.97 0.00 2.75
6986 8435 2.434428 CTTGCACTCTGAAGCCTGAAT 58.566 47.619 0.00 0.00 0.00 2.57
7098 8552 3.134623 CAGCCCTCCCAAAAGTTCTTTTT 59.865 43.478 7.67 0.00 39.55 1.94
7344 8800 6.673154 ACCGGTGTTTAAGCTTAATATCAC 57.327 37.500 24.97 24.97 0.00 3.06
7345 8801 6.174760 ACCGGTGTTTAAGCTTAATATCACA 58.825 36.000 29.08 23.26 0.00 3.58
7434 8892 9.165035 TGGAAAATCATTTCATTTTATTGGCTC 57.835 29.630 3.97 0.00 45.53 4.70
7921 9381 2.025155 GGTAGAGCAACATCTCTCGGA 58.975 52.381 0.00 0.00 42.11 4.55
8061 9521 0.390340 AATCAGCGTCATGTCTGCGT 60.390 50.000 0.00 0.00 0.00 5.24
8089 9549 5.754782 ACAATACAAGCCATGACAATAGGA 58.245 37.500 0.00 0.00 0.00 2.94
8191 9656 4.202121 GGTGGATTGCGAGTCTGACTATTA 60.202 45.833 10.86 0.00 0.00 0.98
8221 9686 4.889995 AGAAAAGAAAAGGTCACCTCCAAG 59.110 41.667 0.00 0.00 30.89 3.61
8222 9687 4.519906 AAAGAAAAGGTCACCTCCAAGA 57.480 40.909 0.00 0.00 30.89 3.02
8223 9688 3.778954 AGAAAAGGTCACCTCCAAGAG 57.221 47.619 0.00 0.00 30.89 2.85
8224 9689 3.318313 AGAAAAGGTCACCTCCAAGAGA 58.682 45.455 0.00 0.00 30.89 3.10
8225 9690 3.913163 AGAAAAGGTCACCTCCAAGAGAT 59.087 43.478 0.00 0.00 30.89 2.75
8237 9702 4.163839 CCTCCAAGAGATGAGATGGTTTCT 59.836 45.833 0.00 0.00 37.41 2.52
8716 10182 6.139671 ACATGATCTGGAGGATTACTACTGT 58.860 40.000 0.00 0.00 34.33 3.55
8773 10239 0.801251 GCATCAGGTGTCAGCTTCAC 59.199 55.000 0.65 9.54 35.36 3.18
8785 10251 1.023513 AGCTTCACGATTGAGCTGGC 61.024 55.000 0.00 0.00 35.89 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.304110 GGCCAATAAATCGTCGATGTAGA 58.696 43.478 8.83 0.00 0.00 2.59
1 2 3.121279 CGGCCAATAAATCGTCGATGTAG 59.879 47.826 8.83 0.00 0.00 2.74
2 3 3.054166 CGGCCAATAAATCGTCGATGTA 58.946 45.455 8.83 8.15 0.00 2.29
3 4 1.864711 CGGCCAATAAATCGTCGATGT 59.135 47.619 8.83 5.73 0.00 3.06
4 5 1.864711 ACGGCCAATAAATCGTCGATG 59.135 47.619 8.83 0.00 0.00 3.84
5 6 2.132762 GACGGCCAATAAATCGTCGAT 58.867 47.619 2.24 0.75 41.60 3.59
6 7 1.563111 GACGGCCAATAAATCGTCGA 58.437 50.000 2.24 0.00 41.60 4.20
9 10 3.945285 AGAAATGACGGCCAATAAATCGT 59.055 39.130 2.24 0.00 38.62 3.73
10 11 4.552166 AGAAATGACGGCCAATAAATCG 57.448 40.909 2.24 0.00 0.00 3.34
11 12 6.371809 TGTAGAAATGACGGCCAATAAATC 57.628 37.500 2.24 0.00 0.00 2.17
12 13 6.680378 GCTTGTAGAAATGACGGCCAATAAAT 60.680 38.462 2.24 0.00 0.00 1.40
13 14 5.392595 GCTTGTAGAAATGACGGCCAATAAA 60.393 40.000 2.24 0.00 0.00 1.40
14 15 4.095782 GCTTGTAGAAATGACGGCCAATAA 59.904 41.667 2.24 0.00 0.00 1.40
15 16 3.625764 GCTTGTAGAAATGACGGCCAATA 59.374 43.478 2.24 0.00 0.00 1.90
16 17 2.423538 GCTTGTAGAAATGACGGCCAAT 59.576 45.455 2.24 0.00 0.00 3.16
17 18 1.810151 GCTTGTAGAAATGACGGCCAA 59.190 47.619 2.24 0.00 0.00 4.52
18 19 1.003118 AGCTTGTAGAAATGACGGCCA 59.997 47.619 2.24 0.00 0.00 5.36
19 20 1.666189 GAGCTTGTAGAAATGACGGCC 59.334 52.381 0.00 0.00 0.00 6.13
20 21 1.666189 GGAGCTTGTAGAAATGACGGC 59.334 52.381 0.00 0.00 0.00 5.68
21 22 2.932614 CAGGAGCTTGTAGAAATGACGG 59.067 50.000 0.00 0.00 0.00 4.79
22 23 2.932614 CCAGGAGCTTGTAGAAATGACG 59.067 50.000 0.00 0.00 0.00 4.35
23 24 3.274288 CCCAGGAGCTTGTAGAAATGAC 58.726 50.000 0.00 0.00 0.00 3.06
24 25 2.912956 ACCCAGGAGCTTGTAGAAATGA 59.087 45.455 0.00 0.00 0.00 2.57
25 26 3.356529 ACCCAGGAGCTTGTAGAAATG 57.643 47.619 0.00 0.00 0.00 2.32
26 27 4.388577 AAACCCAGGAGCTTGTAGAAAT 57.611 40.909 0.00 0.00 0.00 2.17
27 28 3.876309 AAACCCAGGAGCTTGTAGAAA 57.124 42.857 0.00 0.00 0.00 2.52
28 29 4.986054 TTAAACCCAGGAGCTTGTAGAA 57.014 40.909 0.00 0.00 0.00 2.10
29 30 4.986054 TTTAAACCCAGGAGCTTGTAGA 57.014 40.909 0.00 0.00 0.00 2.59
30 31 5.070685 ACTTTTAAACCCAGGAGCTTGTAG 58.929 41.667 0.00 0.00 0.00 2.74
31 32 5.056553 ACTTTTAAACCCAGGAGCTTGTA 57.943 39.130 0.00 0.00 0.00 2.41
32 33 3.910989 ACTTTTAAACCCAGGAGCTTGT 58.089 40.909 0.00 0.00 0.00 3.16
33 34 4.937201 AACTTTTAAACCCAGGAGCTTG 57.063 40.909 0.00 0.00 0.00 4.01
34 35 4.442893 GCAAACTTTTAAACCCAGGAGCTT 60.443 41.667 0.00 0.00 0.00 3.74
35 36 3.069586 GCAAACTTTTAAACCCAGGAGCT 59.930 43.478 0.00 0.00 0.00 4.09
36 37 3.069586 AGCAAACTTTTAAACCCAGGAGC 59.930 43.478 0.00 0.00 0.00 4.70
37 38 4.937201 AGCAAACTTTTAAACCCAGGAG 57.063 40.909 0.00 0.00 0.00 3.69
38 39 5.423886 CAAAGCAAACTTTTAAACCCAGGA 58.576 37.500 0.00 0.00 43.74 3.86
39 40 4.035091 GCAAAGCAAACTTTTAAACCCAGG 59.965 41.667 0.00 0.00 43.74 4.45
40 41 4.875536 AGCAAAGCAAACTTTTAAACCCAG 59.124 37.500 0.00 0.00 43.74 4.45
41 42 4.633565 CAGCAAAGCAAACTTTTAAACCCA 59.366 37.500 0.00 0.00 43.74 4.51
42 43 4.873259 TCAGCAAAGCAAACTTTTAAACCC 59.127 37.500 0.00 0.00 43.74 4.11
43 44 5.006649 CCTCAGCAAAGCAAACTTTTAAACC 59.993 40.000 0.00 0.00 43.74 3.27
44 45 5.502382 GCCTCAGCAAAGCAAACTTTTAAAC 60.502 40.000 0.00 0.00 43.74 2.01
45 46 4.570369 GCCTCAGCAAAGCAAACTTTTAAA 59.430 37.500 0.00 0.00 43.74 1.52
46 47 4.119136 GCCTCAGCAAAGCAAACTTTTAA 58.881 39.130 0.00 0.00 43.74 1.52
47 48 3.716601 GCCTCAGCAAAGCAAACTTTTA 58.283 40.909 0.00 0.00 43.74 1.52
48 49 2.554142 GCCTCAGCAAAGCAAACTTTT 58.446 42.857 0.00 0.00 43.74 2.27
50 51 0.031178 CGCCTCAGCAAAGCAAACTT 59.969 50.000 0.00 0.00 39.83 2.66
51 52 1.656441 CGCCTCAGCAAAGCAAACT 59.344 52.632 0.00 0.00 39.83 2.66
52 53 1.372128 CCGCCTCAGCAAAGCAAAC 60.372 57.895 0.00 0.00 39.83 2.93
53 54 2.563798 CCCGCCTCAGCAAAGCAAA 61.564 57.895 0.00 0.00 39.83 3.68
54 55 2.985282 CCCGCCTCAGCAAAGCAA 60.985 61.111 0.00 0.00 39.83 3.91
67 68 4.814294 ATCTCGTTGTCGCCCCGC 62.814 66.667 0.00 0.00 36.96 6.13
68 69 1.740296 AAATCTCGTTGTCGCCCCG 60.740 57.895 0.00 0.00 36.96 5.73
69 70 1.794222 CAAATCTCGTTGTCGCCCC 59.206 57.895 0.00 0.00 36.96 5.80
70 71 1.134694 GCAAATCTCGTTGTCGCCC 59.865 57.895 0.00 0.00 36.96 6.13
71 72 0.095417 GAGCAAATCTCGTTGTCGCC 59.905 55.000 0.00 0.00 36.96 5.54
72 73 0.790207 TGAGCAAATCTCGTTGTCGC 59.210 50.000 0.00 0.00 44.86 5.19
73 74 1.201704 CGTGAGCAAATCTCGTTGTCG 60.202 52.381 0.00 0.00 44.86 4.35
74 75 2.058798 TCGTGAGCAAATCTCGTTGTC 58.941 47.619 0.00 0.00 44.86 3.18
75 76 1.792949 GTCGTGAGCAAATCTCGTTGT 59.207 47.619 0.00 0.00 44.86 3.32
76 77 1.201704 CGTCGTGAGCAAATCTCGTTG 60.202 52.381 0.00 0.00 44.86 4.10
77 78 1.060713 CGTCGTGAGCAAATCTCGTT 58.939 50.000 0.00 0.00 44.86 3.85
78 79 1.344942 GCGTCGTGAGCAAATCTCGT 61.345 55.000 0.00 0.00 44.86 4.18
79 80 1.341802 GCGTCGTGAGCAAATCTCG 59.658 57.895 0.00 0.00 44.86 4.04
80 81 1.341802 CGCGTCGTGAGCAAATCTC 59.658 57.895 0.00 0.00 42.23 2.75
81 82 2.730672 GCGCGTCGTGAGCAAATCT 61.731 57.895 10.58 0.00 43.66 2.40
82 83 2.276058 GCGCGTCGTGAGCAAATC 60.276 61.111 10.58 0.00 43.66 2.17
83 84 3.788766 GGCGCGTCGTGAGCAAAT 61.789 61.111 10.58 0.00 46.35 2.32
94 95 1.017177 AAATACATGTGACGGCGCGT 61.017 50.000 9.11 2.29 45.10 6.01
95 96 0.096281 AAAATACATGTGACGGCGCG 59.904 50.000 9.11 0.00 0.00 6.86
96 97 2.256445 AAAAATACATGTGACGGCGC 57.744 45.000 9.11 0.00 0.00 6.53
128 129 6.568271 GCCTAAAAATCCGACGTCCTTAAAAA 60.568 38.462 10.58 0.00 0.00 1.94
129 130 5.106594 GCCTAAAAATCCGACGTCCTTAAAA 60.107 40.000 10.58 0.00 0.00 1.52
130 131 4.392754 GCCTAAAAATCCGACGTCCTTAAA 59.607 41.667 10.58 0.00 0.00 1.52
131 132 3.934579 GCCTAAAAATCCGACGTCCTTAA 59.065 43.478 10.58 0.00 0.00 1.85
132 133 3.055963 TGCCTAAAAATCCGACGTCCTTA 60.056 43.478 10.58 0.00 0.00 2.69
133 134 2.289819 TGCCTAAAAATCCGACGTCCTT 60.290 45.455 10.58 0.00 0.00 3.36
134 135 1.276989 TGCCTAAAAATCCGACGTCCT 59.723 47.619 10.58 0.00 0.00 3.85
135 136 1.729284 TGCCTAAAAATCCGACGTCC 58.271 50.000 10.58 0.00 0.00 4.79
148 149 6.839124 AAATGTCAGATTTGTCATGCCTAA 57.161 33.333 0.00 0.00 34.12 2.69
180 181 4.180817 CCATCATCGCGCCAATATAAGTA 58.819 43.478 0.00 0.00 0.00 2.24
182 183 3.002791 ACCATCATCGCGCCAATATAAG 58.997 45.455 0.00 0.00 0.00 1.73
191 192 4.844267 ACTAAATTTTACCATCATCGCGC 58.156 39.130 0.00 0.00 0.00 6.86
203 204 9.632807 ATTGCGATGCTTACAAACTAAATTTTA 57.367 25.926 0.00 0.00 0.00 1.52
204 205 7.938563 TTGCGATGCTTACAAACTAAATTTT 57.061 28.000 0.00 0.00 0.00 1.82
212 213 4.324402 CAGGAAATTGCGATGCTTACAAAC 59.676 41.667 0.00 0.00 0.00 2.93
217 218 3.342719 TGTCAGGAAATTGCGATGCTTA 58.657 40.909 0.00 0.00 0.00 3.09
223 224 4.518590 TCATTTTCTGTCAGGAAATTGCGA 59.481 37.500 15.37 8.31 36.92 5.10
224 225 4.797471 TCATTTTCTGTCAGGAAATTGCG 58.203 39.130 15.37 6.28 36.92 4.85
236 237 1.673033 CCGTCTCGGCTCATTTTCTGT 60.673 52.381 0.00 0.00 41.17 3.41
253 259 0.178068 AGCGAGCATGGTAAATCCGT 59.822 50.000 0.00 0.00 39.52 4.69
255 261 3.467803 AGTTAGCGAGCATGGTAAATCC 58.532 45.455 0.00 0.00 33.99 3.01
270 276 4.201861 GCTCAGGATTGCAAGTTAGTTAGC 60.202 45.833 4.94 4.40 0.00 3.09
272 278 4.905429 TGCTCAGGATTGCAAGTTAGTTA 58.095 39.130 4.94 0.00 36.15 2.24
322 332 4.378459 CGTCAGACTTTTAGGATGGCAAAC 60.378 45.833 0.00 0.00 0.00 2.93
347 358 6.870971 TTTATTTACCCGAATATCCAGCAC 57.129 37.500 0.00 0.00 0.00 4.40
364 375 2.027285 GCATGGGTGGGTGCTTTTATTT 60.027 45.455 0.00 0.00 38.30 1.40
365 376 1.554617 GCATGGGTGGGTGCTTTTATT 59.445 47.619 0.00 0.00 38.30 1.40
367 378 2.664825 GCATGGGTGGGTGCTTTTA 58.335 52.632 0.00 0.00 38.30 1.52
372 383 2.830370 GCTAGCATGGGTGGGTGC 60.830 66.667 10.63 0.00 41.57 5.01
379 396 2.590007 GTCCGCTGCTAGCATGGG 60.590 66.667 26.99 24.64 42.58 4.00
385 402 4.880537 CCGCTGGTCCGCTGCTAG 62.881 72.222 0.00 0.00 0.00 3.42
388 405 4.752879 TTACCGCTGGTCCGCTGC 62.753 66.667 3.45 0.00 37.09 5.25
389 406 0.179094 TAATTACCGCTGGTCCGCTG 60.179 55.000 3.45 1.06 37.09 5.18
390 407 0.104304 CTAATTACCGCTGGTCCGCT 59.896 55.000 3.45 0.00 37.09 5.52
391 408 1.496403 GCTAATTACCGCTGGTCCGC 61.496 60.000 3.45 0.00 37.09 5.54
393 410 0.878961 CCGCTAATTACCGCTGGTCC 60.879 60.000 3.45 0.00 37.09 4.46
394 411 0.103572 TCCGCTAATTACCGCTGGTC 59.896 55.000 3.45 0.00 37.09 4.02
395 412 0.104304 CTCCGCTAATTACCGCTGGT 59.896 55.000 5.58 5.58 40.16 4.00
396 413 0.387929 TCTCCGCTAATTACCGCTGG 59.612 55.000 0.00 0.00 0.00 4.85
443 1682 1.156095 TCTCCTCTCCAGCACACCA 59.844 57.895 0.00 0.00 0.00 4.17
462 1706 3.532155 CCGGCCCTTCTCTCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
549 1793 1.487300 GAGGAGAGGTAGGGTGGTTC 58.513 60.000 0.00 0.00 0.00 3.62
571 1815 2.140098 AGAATAATGGAGGGGGAGGG 57.860 55.000 0.00 0.00 0.00 4.30
572 1816 4.568592 GCAATAGAATAATGGAGGGGGAGG 60.569 50.000 0.00 0.00 0.00 4.30
573 1817 4.290722 AGCAATAGAATAATGGAGGGGGAG 59.709 45.833 0.00 0.00 0.00 4.30
574 1818 4.043310 CAGCAATAGAATAATGGAGGGGGA 59.957 45.833 0.00 0.00 0.00 4.81
575 1819 4.202609 ACAGCAATAGAATAATGGAGGGGG 60.203 45.833 0.00 0.00 0.00 5.40
576 1820 4.990526 ACAGCAATAGAATAATGGAGGGG 58.009 43.478 0.00 0.00 0.00 4.79
577 1821 6.966534 AAACAGCAATAGAATAATGGAGGG 57.033 37.500 0.00 0.00 0.00 4.30
608 1855 3.260931 CGGACGACGGTGAGAAGA 58.739 61.111 0.00 0.00 39.42 2.87
770 2032 0.923358 GAGGTGGAGGAGAGAGAGGA 59.077 60.000 0.00 0.00 0.00 3.71
773 2035 1.585651 GGGGAGGTGGAGGAGAGAGA 61.586 65.000 0.00 0.00 0.00 3.10
867 2129 4.775977 AGCTCCGCCTCCTGCTCT 62.776 66.667 0.00 0.00 38.05 4.09
878 2157 0.745845 CAGATTTGGTGGGAGCTCCG 60.746 60.000 26.36 4.60 38.76 4.63
928 2222 2.963371 GATACGGCCGCCTAGGAG 59.037 66.667 28.58 9.83 45.00 3.69
931 2225 2.254651 GTCGATACGGCCGCCTAG 59.745 66.667 28.58 15.20 0.00 3.02
932 2226 2.516695 TGTCGATACGGCCGCCTA 60.517 61.111 28.58 12.19 0.00 3.93
933 2227 3.900892 CTGTCGATACGGCCGCCT 61.901 66.667 28.58 13.41 0.00 5.52
934 2228 4.944372 CCTGTCGATACGGCCGCC 62.944 72.222 28.58 14.14 0.00 6.13
935 2229 3.825833 CTCCTGTCGATACGGCCGC 62.826 68.421 28.58 8.36 0.00 6.53
949 2243 0.760945 AGGCCGAAATCGATCCTCCT 60.761 55.000 4.04 0.00 43.02 3.69
950 2244 0.319986 GAGGCCGAAATCGATCCTCC 60.320 60.000 22.29 6.47 44.84 4.30
952 2246 1.364171 CGAGGCCGAAATCGATCCT 59.636 57.895 6.26 13.68 41.40 3.24
955 2249 2.280186 GCCGAGGCCGAAATCGAT 60.280 61.111 13.28 0.00 41.40 3.59
993 2287 2.436646 AGCTTGAACATCCCGCCG 60.437 61.111 0.00 0.00 0.00 6.46
1119 2417 1.581223 GTAAGCTAGGGTGGGAAGGT 58.419 55.000 0.00 0.00 0.00 3.50
1123 2421 0.252375 AACGGTAAGCTAGGGTGGGA 60.252 55.000 0.00 0.00 0.00 4.37
1127 2428 4.242336 ACTAGTAACGGTAAGCTAGGGT 57.758 45.455 9.29 0.00 36.25 4.34
1130 2431 5.277731 GCAGGTACTAGTAACGGTAAGCTAG 60.278 48.000 17.72 4.10 36.02 3.42
1139 2440 0.248784 GGGCGCAGGTACTAGTAACG 60.249 60.000 10.83 10.96 36.02 3.18
1140 2441 0.248784 CGGGCGCAGGTACTAGTAAC 60.249 60.000 10.83 10.12 36.02 2.50
1141 2442 2.008268 GCGGGCGCAGGTACTAGTAA 62.008 60.000 10.83 0.00 41.49 2.24
1142 2443 2.484062 GCGGGCGCAGGTACTAGTA 61.484 63.158 10.83 0.00 41.49 1.82
1179 2480 4.569180 ATCTCCCCAATGCCGCCG 62.569 66.667 0.00 0.00 0.00 6.46
1247 2548 5.523188 GCTCTAGCAAACTACTACTCGTAGA 59.477 44.000 10.83 0.00 43.36 2.59
1248 2549 5.740406 GCTCTAGCAAACTACTACTCGTAG 58.260 45.833 2.66 2.66 44.70 3.51
1249 2550 5.731599 GCTCTAGCAAACTACTACTCGTA 57.268 43.478 0.00 0.00 41.59 3.43
1250 2551 4.619437 GCTCTAGCAAACTACTACTCGT 57.381 45.455 0.00 0.00 41.59 4.18
1263 2574 2.842394 GAGTGCGGCTTGCTCTAGCA 62.842 60.000 0.00 0.00 46.85 3.49
1270 2581 4.395583 GCAGTGAGTGCGGCTTGC 62.396 66.667 0.00 0.00 43.99 4.01
1278 2589 2.628106 GCGTGTGTGCAGTGAGTG 59.372 61.111 0.00 0.00 34.15 3.51
1302 2613 1.958205 CCAGCTATGCGCCTACAGC 60.958 63.158 4.18 8.29 40.39 4.40
1303 2614 0.319383 CTCCAGCTATGCGCCTACAG 60.319 60.000 4.18 0.00 40.39 2.74
1305 2616 0.605589 ATCTCCAGCTATGCGCCTAC 59.394 55.000 4.18 0.00 40.39 3.18
1306 2617 1.342074 AATCTCCAGCTATGCGCCTA 58.658 50.000 4.18 0.00 40.39 3.93
1309 2620 1.586422 TGAAATCTCCAGCTATGCGC 58.414 50.000 0.00 0.00 39.57 6.09
1310 2621 4.274214 TGAAATGAAATCTCCAGCTATGCG 59.726 41.667 0.00 0.00 0.00 4.73
1311 2622 5.762825 TGAAATGAAATCTCCAGCTATGC 57.237 39.130 0.00 0.00 0.00 3.14
1312 2623 7.230913 AGGAATGAAATGAAATCTCCAGCTATG 59.769 37.037 0.00 0.00 0.00 2.23
1313 2624 7.296098 AGGAATGAAATGAAATCTCCAGCTAT 58.704 34.615 0.00 0.00 0.00 2.97
1314 2625 6.666678 AGGAATGAAATGAAATCTCCAGCTA 58.333 36.000 0.00 0.00 0.00 3.32
1315 2626 5.516984 AGGAATGAAATGAAATCTCCAGCT 58.483 37.500 0.00 0.00 0.00 4.24
1316 2627 5.848833 AGGAATGAAATGAAATCTCCAGC 57.151 39.130 0.00 0.00 0.00 4.85
1317 2628 7.013083 CAGGTAGGAATGAAATGAAATCTCCAG 59.987 40.741 0.00 0.00 0.00 3.86
1318 2629 6.830324 CAGGTAGGAATGAAATGAAATCTCCA 59.170 38.462 0.00 0.00 0.00 3.86
1319 2630 6.264067 CCAGGTAGGAATGAAATGAAATCTCC 59.736 42.308 0.00 0.00 41.22 3.71
1320 2631 6.238869 GCCAGGTAGGAATGAAATGAAATCTC 60.239 42.308 0.00 0.00 41.22 2.75
1321 2632 5.595952 GCCAGGTAGGAATGAAATGAAATCT 59.404 40.000 0.00 0.00 41.22 2.40
1322 2633 5.595952 AGCCAGGTAGGAATGAAATGAAATC 59.404 40.000 0.00 0.00 41.22 2.17
1323 2634 5.361857 CAGCCAGGTAGGAATGAAATGAAAT 59.638 40.000 0.00 0.00 41.22 2.17
1324 2635 4.706476 CAGCCAGGTAGGAATGAAATGAAA 59.294 41.667 0.00 0.00 41.22 2.69
1325 2636 4.263905 ACAGCCAGGTAGGAATGAAATGAA 60.264 41.667 0.00 0.00 41.22 2.57
1326 2637 3.266772 ACAGCCAGGTAGGAATGAAATGA 59.733 43.478 0.00 0.00 41.22 2.57
1327 2638 3.379372 CACAGCCAGGTAGGAATGAAATG 59.621 47.826 0.00 0.00 41.22 2.32
1347 2658 1.483827 GTAGTGGGTAGGTTAGGGCAC 59.516 57.143 0.00 0.00 0.00 5.01
1348 2659 1.363629 AGTAGTGGGTAGGTTAGGGCA 59.636 52.381 0.00 0.00 0.00 5.36
1349 2660 2.171568 AGTAGTGGGTAGGTTAGGGC 57.828 55.000 0.00 0.00 0.00 5.19
1350 2661 4.533001 AGTAGTAGTGGGTAGGTTAGGG 57.467 50.000 0.00 0.00 0.00 3.53
1351 2662 6.259346 AGTAGTAGTAGTGGGTAGGTTAGG 57.741 45.833 0.00 0.00 0.00 2.69
1352 2663 7.930865 CAGTAGTAGTAGTAGTGGGTAGGTTAG 59.069 44.444 10.85 0.00 0.00 2.34
1353 2664 7.635971 GCAGTAGTAGTAGTAGTGGGTAGGTTA 60.636 44.444 17.76 0.00 0.00 2.85
1354 2665 6.657875 CAGTAGTAGTAGTAGTGGGTAGGTT 58.342 44.000 10.85 0.00 0.00 3.50
1355 2666 5.397334 GCAGTAGTAGTAGTAGTGGGTAGGT 60.397 48.000 17.76 0.00 0.00 3.08
1356 2667 5.062528 GCAGTAGTAGTAGTAGTGGGTAGG 58.937 50.000 17.76 0.00 0.00 3.18
1358 2669 5.190528 AGTGCAGTAGTAGTAGTAGTGGGTA 59.809 44.000 17.76 0.00 0.00 3.69
1359 2670 4.018597 AGTGCAGTAGTAGTAGTAGTGGGT 60.019 45.833 17.76 0.00 0.00 4.51
1360 2671 4.525024 AGTGCAGTAGTAGTAGTAGTGGG 58.475 47.826 17.76 0.00 0.00 4.61
1379 2699 7.064253 GCCATTAAACACAGGTTACTACTAGTG 59.936 40.741 5.39 0.00 35.82 2.74
1405 2727 0.105593 ATGGCCAGATCACGCAGTAG 59.894 55.000 13.05 0.00 41.61 2.57
1437 2759 1.975680 ACACAGGTAGGTTTGGATCGT 59.024 47.619 0.00 0.00 0.00 3.73
1439 2761 2.618045 CCCACACAGGTAGGTTTGGATC 60.618 54.545 0.30 0.00 40.31 3.36
1446 2768 0.693092 ACACACCCACACAGGTAGGT 60.693 55.000 0.00 0.00 39.81 3.08
1459 2781 4.321675 GGTCCAATTCCAAATGTACACACC 60.322 45.833 0.00 0.00 0.00 4.16
1519 2908 1.838112 CAATTGGCTGGCAGTAGGAA 58.162 50.000 17.16 4.37 0.00 3.36
1520 2909 0.680921 GCAATTGGCTGGCAGTAGGA 60.681 55.000 17.16 0.37 40.25 2.94
1521 2910 1.669999 GGCAATTGGCTGGCAGTAGG 61.670 60.000 23.74 1.67 44.01 3.18
1532 2921 5.983540 AGTAGACTAGAAAGAGGCAATTGG 58.016 41.667 7.72 0.00 0.00 3.16
1570 2960 5.726793 ACCAGAAAGGAGAATACTACCATGT 59.273 40.000 0.00 0.00 41.22 3.21
1638 3034 0.584876 GAACACCACACCGCAGTAAC 59.415 55.000 0.00 0.00 0.00 2.50
1649 3045 5.155332 CCGTTGGAGAAATGGAACACCAC 62.155 52.174 0.00 0.00 46.62 4.16
1669 3065 1.604604 TTTCTTCCAGAAACCTGCCG 58.395 50.000 0.00 0.00 39.13 5.69
1720 3116 7.140705 TGTTGTTTGAATGCTATTTCTGACAG 58.859 34.615 0.00 0.00 0.00 3.51
1725 3121 7.472334 AGGATGTTGTTTGAATGCTATTTCT 57.528 32.000 0.00 0.00 0.00 2.52
1730 3126 9.109393 GAGTATAAGGATGTTGTTTGAATGCTA 57.891 33.333 0.00 0.00 0.00 3.49
1740 3136 5.175859 CGTTGTGGAGTATAAGGATGTTGT 58.824 41.667 0.00 0.00 0.00 3.32
1741 3137 4.570772 CCGTTGTGGAGTATAAGGATGTTG 59.429 45.833 0.00 0.00 42.00 3.33
1742 3138 4.383770 CCCGTTGTGGAGTATAAGGATGTT 60.384 45.833 0.00 0.00 42.00 2.71
1743 3139 3.134081 CCCGTTGTGGAGTATAAGGATGT 59.866 47.826 0.00 0.00 42.00 3.06
1744 3140 3.494398 CCCCGTTGTGGAGTATAAGGATG 60.494 52.174 0.00 0.00 42.00 3.51
1745 3141 2.704065 CCCCGTTGTGGAGTATAAGGAT 59.296 50.000 0.00 0.00 42.00 3.24
1747 3143 1.140252 CCCCCGTTGTGGAGTATAAGG 59.860 57.143 0.00 0.00 42.00 2.69
1748 3144 2.112998 TCCCCCGTTGTGGAGTATAAG 58.887 52.381 0.00 0.00 42.00 1.73
1749 3145 2.250921 TCCCCCGTTGTGGAGTATAA 57.749 50.000 0.00 0.00 42.00 0.98
1750 3146 2.250921 TTCCCCCGTTGTGGAGTATA 57.749 50.000 0.00 0.00 42.00 1.47
1751 3147 1.211949 CATTCCCCCGTTGTGGAGTAT 59.788 52.381 0.00 0.00 42.00 2.12
1752 3148 0.616371 CATTCCCCCGTTGTGGAGTA 59.384 55.000 0.00 0.00 42.00 2.59
1760 3156 1.029947 GTTCGATGCATTCCCCCGTT 61.030 55.000 0.00 0.00 0.00 4.44
1763 3159 1.103398 CAGGTTCGATGCATTCCCCC 61.103 60.000 0.00 0.00 0.00 5.40
1772 3168 3.725895 CGCAGATTTTCACAGGTTCGATG 60.726 47.826 0.00 0.00 0.00 3.84
1774 3170 1.798223 CGCAGATTTTCACAGGTTCGA 59.202 47.619 0.00 0.00 0.00 3.71
1791 3187 2.747989 AGAGAGAGTCGTTGTTATCGCA 59.252 45.455 0.00 0.00 0.00 5.10
1794 3190 7.311364 AGAAGTAGAGAGAGTCGTTGTTATC 57.689 40.000 0.00 0.00 0.00 1.75
1795 3191 7.608761 AGAAGAAGTAGAGAGAGTCGTTGTTAT 59.391 37.037 0.00 0.00 0.00 1.89
1796 3192 6.935771 AGAAGAAGTAGAGAGAGTCGTTGTTA 59.064 38.462 0.00 0.00 0.00 2.41
1801 3197 7.608761 ACAATAAGAAGAAGTAGAGAGAGTCGT 59.391 37.037 0.00 0.00 0.00 4.34
1812 3208 9.772973 TGAGCAACTAAACAATAAGAAGAAGTA 57.227 29.630 0.00 0.00 0.00 2.24
1818 3214 6.303839 ACCCTGAGCAACTAAACAATAAGAA 58.696 36.000 0.00 0.00 0.00 2.52
1820 3216 6.575162 AACCCTGAGCAACTAAACAATAAG 57.425 37.500 0.00 0.00 0.00 1.73
1823 3219 4.892934 TGAAACCCTGAGCAACTAAACAAT 59.107 37.500 0.00 0.00 0.00 2.71
1824 3220 4.274147 TGAAACCCTGAGCAACTAAACAA 58.726 39.130 0.00 0.00 0.00 2.83
1826 3222 3.253432 CCTGAAACCCTGAGCAACTAAAC 59.747 47.826 0.00 0.00 0.00 2.01
1830 3226 0.538287 GCCTGAAACCCTGAGCAACT 60.538 55.000 0.00 0.00 0.00 3.16
1850 3252 6.953743 CAGTAAATACATGTAGCGTGAAACAC 59.046 38.462 11.91 0.00 35.74 3.32
1852 3254 6.091713 ACCAGTAAATACATGTAGCGTGAAAC 59.908 38.462 11.91 3.08 0.00 2.78
1857 3259 6.093082 GGAAAACCAGTAAATACATGTAGCGT 59.907 38.462 11.91 1.66 0.00 5.07
1864 3277 8.522830 CAGTCATTGGAAAACCAGTAAATACAT 58.477 33.333 0.00 0.00 0.00 2.29
1881 3294 6.684686 ACAAGTCAAATCAATCAGTCATTGG 58.315 36.000 0.00 0.00 42.18 3.16
1885 3298 8.853077 AGAATACAAGTCAAATCAATCAGTCA 57.147 30.769 0.00 0.00 0.00 3.41
2116 3531 8.749354 CAGTAGTATGCTATGAATACCCATACA 58.251 37.037 10.54 0.00 40.21 2.29
2134 3549 6.490721 GGTGGCTAGATAGAACACAGTAGTAT 59.509 42.308 13.54 0.00 35.67 2.12
2198 3617 6.204688 TCAGCAAAACAAATACTAGTCCACAG 59.795 38.462 0.00 0.00 0.00 3.66
2323 3742 4.313277 TCTCTTCAACGGCATAGAGATG 57.687 45.455 0.00 0.00 38.49 2.90
2381 3800 5.241949 TCTTTAAAAAGGAAGCGGTTGCATA 59.758 36.000 21.01 5.74 38.99 3.14
2382 3801 4.038642 TCTTTAAAAAGGAAGCGGTTGCAT 59.961 37.500 21.01 6.16 38.99 3.96
2391 3810 7.307160 GCACCCGAAAAATCTTTAAAAAGGAAG 60.307 37.037 2.77 0.00 36.67 3.46
2411 3830 3.067106 GGATCATATACACAAGCACCCG 58.933 50.000 0.00 0.00 0.00 5.28
2419 3838 7.669089 TTCAGGTTACAGGATCATATACACA 57.331 36.000 0.00 0.00 0.00 3.72
2468 3887 9.643693 AGAATAAATGGAAAAGCATAAACACTG 57.356 29.630 0.00 0.00 0.00 3.66
3275 4695 9.869667 ACTTACAACTATCCTAGAGATGTGTAT 57.130 33.333 0.00 0.00 36.33 2.29
3277 4697 9.696572 TTACTTACAACTATCCTAGAGATGTGT 57.303 33.333 0.00 2.67 36.33 3.72
3282 4702 8.964772 GGTGTTTACTTACAACTATCCTAGAGA 58.035 37.037 0.00 0.00 32.92 3.10
3406 4826 5.346822 GTGATGATCAAAGGCAAATGAACAC 59.653 40.000 0.00 0.00 32.25 3.32
3407 4827 5.010820 TGTGATGATCAAAGGCAAATGAACA 59.989 36.000 0.00 0.00 33.68 3.18
3408 4828 5.472148 TGTGATGATCAAAGGCAAATGAAC 58.528 37.500 0.00 0.00 0.00 3.18
3410 4830 5.925506 ATGTGATGATCAAAGGCAAATGA 57.074 34.783 0.00 0.00 0.00 2.57
3411 4831 7.307160 GCATAATGTGATGATCAAAGGCAAATG 60.307 37.037 0.00 6.82 0.00 2.32
3419 4846 8.523915 ACTTAAGGCATAATGTGATGATCAAA 57.476 30.769 7.53 0.00 0.00 2.69
3468 4895 6.753180 TGCAAGCCAAATGAGTACAATAAAA 58.247 32.000 0.00 0.00 0.00 1.52
3549 4993 5.882557 ACTCTGACAGGGCATTACATAAAAG 59.117 40.000 0.98 0.00 0.00 2.27
3850 5296 5.941647 AGCAATCCCATTTGAAAAGGATTTG 59.058 36.000 17.83 13.11 44.81 2.32
4090 5536 5.957842 ATTCTTCAATTTCGTGCCTGTAA 57.042 34.783 0.00 0.00 0.00 2.41
4150 5596 1.464997 CTGCTTAACTCTGGCCGAAAC 59.535 52.381 0.00 0.00 0.00 2.78
4357 5803 8.424918 TCAGAAATTTTAGATATCTCCGCTCTT 58.575 33.333 8.95 0.00 0.00 2.85
4441 5887 3.274288 CAGTTTCCTAGCCCATTCTGTC 58.726 50.000 0.00 0.00 0.00 3.51
4483 5929 7.254252 CGATCTAGTTTCTGCCTCAAAGTATTG 60.254 40.741 0.00 0.00 37.92 1.90
4698 6144 5.873712 TGCAATTCACTGTTGTTTGAAACAT 59.126 32.000 11.97 0.00 41.79 2.71
4774 6220 2.797087 GCCGTCATGCATCATTTCCTTG 60.797 50.000 0.00 0.00 0.00 3.61
5112 6558 5.038033 TCAAATTTTCCGTTTCGACTTTGG 58.962 37.500 0.00 0.00 0.00 3.28
5509 6955 4.164221 TCAACCCTTTGAGTATCCATCTCC 59.836 45.833 0.00 0.00 36.79 3.71
5538 6984 5.837586 TTGTGTTTCTTGCTGTTTTTGTC 57.162 34.783 0.00 0.00 0.00 3.18
5947 7393 4.231890 ACCTCCCTCTCAAGATTCTCTACT 59.768 45.833 0.00 0.00 0.00 2.57
6037 7483 0.033011 GCAGGACAGAGACCTCCCTA 60.033 60.000 0.00 0.00 35.35 3.53
6038 7484 1.305718 GCAGGACAGAGACCTCCCT 60.306 63.158 0.00 0.00 35.35 4.20
6156 7602 6.873605 GGAATCAACCAAACCTTTAATCTTGG 59.126 38.462 0.00 0.00 43.33 3.61
6181 7627 3.488047 CGCTCTGTTTGGATGCATTAAGG 60.488 47.826 0.00 0.00 0.00 2.69
6226 7672 6.825213 CCTCCATCAACTTCTTCATATGTTCA 59.175 38.462 1.90 0.00 0.00 3.18
6250 7696 4.581824 TCATCTTCATTGGATTTAGCAGCC 59.418 41.667 0.00 0.00 0.00 4.85
6251 7697 5.298777 ACTCATCTTCATTGGATTTAGCAGC 59.701 40.000 0.00 0.00 0.00 5.25
6271 7717 3.005472 CACCAGAAGACTTCCGTAACTCA 59.995 47.826 11.67 0.00 0.00 3.41
6435 7881 5.588246 GCCTTCAATTTTCCCTTTTCAAACA 59.412 36.000 0.00 0.00 0.00 2.83
6454 7900 0.527385 CAGACTCTAGCAGCGCCTTC 60.527 60.000 2.29 0.00 0.00 3.46
6790 8236 5.138125 ACATCAATGCGGTGATTCTTTTT 57.862 34.783 0.00 0.00 36.04 1.94
6795 8241 2.684881 AGGAACATCAATGCGGTGATTC 59.315 45.455 0.00 0.00 36.04 2.52
7344 8800 6.257411 CCAGTGTACAATCTAGCTTCAAGATG 59.743 42.308 0.00 0.00 33.95 2.90
7345 8801 6.070538 ACCAGTGTACAATCTAGCTTCAAGAT 60.071 38.462 0.00 0.00 35.17 2.40
7434 8892 3.889538 TCTACAGTATGGACAATCCCTCG 59.110 47.826 0.00 0.00 43.62 4.63
7724 9182 1.065851 GCCTCTACTTCTGCGTACTCC 59.934 57.143 0.00 0.00 0.00 3.85
7921 9381 9.581099 CACTGATAACAAACCTAAAACAGTTTT 57.419 29.630 15.58 15.58 34.02 2.43
8089 9549 7.732996 TCACATCATGATAATCTGACATCAGT 58.267 34.615 8.15 0.00 37.56 3.41
8191 9656 3.220110 GACCTTTTCTTTTCTTCCGGGT 58.780 45.455 0.00 0.00 0.00 5.28
8256 9721 2.015736 CCAGGAAATGGTCAGACTCG 57.984 55.000 0.00 0.00 44.91 4.18
8331 9796 5.653330 AGAAACACATGGCATCACATAATCA 59.347 36.000 0.00 0.00 0.00 2.57
8735 10201 4.640771 TGCTTGTCTTGGATCCTTTAGT 57.359 40.909 14.23 0.00 0.00 2.24
8738 10204 4.015084 CTGATGCTTGTCTTGGATCCTTT 58.985 43.478 14.23 0.00 32.40 3.11
8773 10239 1.570813 TGAATACGCCAGCTCAATCG 58.429 50.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.