Multiple sequence alignment - TraesCS4D01G354400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G354400 chr4D 100.000 5670 0 0 1 5670 504261049 504266718 0.000000e+00 10471.0
1 TraesCS4D01G354400 chr4D 97.778 45 1 0 4822 4866 504265749 504265793 1.690000e-10 78.7
2 TraesCS4D01G354400 chr4D 97.778 45 1 0 4701 4745 504265870 504265914 1.690000e-10 78.7
3 TraesCS4D01G354400 chr4B 93.349 3729 210 14 836 4539 650881718 650885433 0.000000e+00 5478.0
4 TraesCS4D01G354400 chr4B 85.448 804 86 16 68 849 650867467 650868261 0.000000e+00 808.0
5 TraesCS4D01G354400 chr4B 92.606 541 23 9 5144 5670 650886061 650886598 0.000000e+00 761.0
6 TraesCS4D01G354400 chr4B 98.352 364 5 1 4537 4899 650885510 650885873 6.200000e-179 638.0
7 TraesCS4D01G354400 chr4B 87.766 188 16 5 4932 5112 650885874 650886061 4.450000e-51 213.0
8 TraesCS4D01G354400 chr4B 100.000 45 0 0 4701 4745 650885796 650885840 3.640000e-12 84.2
9 TraesCS4D01G354400 chr4B 97.778 45 1 0 4822 4866 650885675 650885719 1.690000e-10 78.7
10 TraesCS4D01G354400 chr4B 100.000 28 0 0 4539 4566 650885400 650885427 1.000000e-02 52.8
11 TraesCS4D01G354400 chr5A 91.049 2268 145 19 1794 4035 688936477 688938712 0.000000e+00 3011.0
12 TraesCS4D01G354400 chr5A 89.067 750 54 11 754 1486 688935743 688936481 0.000000e+00 905.0
13 TraesCS4D01G354400 chr5A 89.377 546 33 14 216 737 688930905 688931449 0.000000e+00 664.0
14 TraesCS4D01G354400 chr5A 78.758 306 42 6 4625 4911 688939249 688939550 3.490000e-42 183.0
15 TraesCS4D01G354400 chr5A 89.922 129 9 3 5366 5490 688943162 688943290 4.550000e-36 163.0
16 TraesCS4D01G354400 chr5A 84.828 145 13 4 3997 4134 688941183 688941325 2.760000e-28 137.0
17 TraesCS4D01G354400 chr5A 98.387 62 1 0 5609 5670 688943444 688943505 6.010000e-20 110.0
18 TraesCS4D01G354400 chr5A 86.517 89 5 3 4823 4911 688939326 688939407 2.180000e-14 91.6
19 TraesCS4D01G354400 chr5A 100.000 28 0 0 988 1015 688935852 688935879 1.000000e-02 52.8
20 TraesCS4D01G354400 chr6D 78.107 169 37 0 2902 3070 463848913 463849081 2.160000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G354400 chr4D 504261049 504266718 5669 False 3542.800000 10471 98.518667 1 5670 3 chr4D.!!$F1 5669
1 TraesCS4D01G354400 chr4B 650881718 650886598 4880 False 1043.671429 5478 95.693000 836 5670 7 chr4B.!!$F2 4834
2 TraesCS4D01G354400 chr4B 650867467 650868261 794 False 808.000000 808 85.448000 68 849 1 chr4B.!!$F1 781
3 TraesCS4D01G354400 chr5A 688930905 688931449 544 False 664.000000 664 89.377000 216 737 1 chr5A.!!$F1 521
4 TraesCS4D01G354400 chr5A 688935743 688943505 7762 False 581.675000 3011 89.816000 754 5670 8 chr5A.!!$F2 4916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 230 0.038983 GCAGCATGTGTGACAATGCA 60.039 50.0 24.02 6.25 39.31 3.96 F
1753 1811 0.319727 CTCTGATCGATGCTGAGCCC 60.320 60.0 0.54 0.00 0.00 5.19 F
3031 3108 0.109597 CACTGCCAAAGCGAATCCAC 60.110 55.0 0.00 0.00 44.31 4.02 F
4232 4322 0.591659 GCTGGAACCGGTTTCACTTC 59.408 55.0 24.93 12.47 35.70 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2068 0.037975 CAGCATGTCCTGGTTTTGGC 60.038 55.0 0.00 0.00 31.82 4.52 R
3281 3361 0.040058 AGCTGCCCAACATCCATCAA 59.960 50.0 0.00 0.00 0.00 2.57 R
4246 4336 1.151668 GTGCAGCACTGAAGGTACTG 58.848 55.0 18.92 0.00 40.86 2.74 R
5139 5454 0.555280 TAGCCAGGGCATGCCATAAA 59.445 50.0 36.56 13.94 44.88 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.349663 GTGCTTTATAACATCGGTGCAA 57.650 40.909 0.00 0.00 0.00 4.08
22 23 4.095610 GTGCTTTATAACATCGGTGCAAC 58.904 43.478 0.00 0.00 0.00 4.17
23 24 3.753797 TGCTTTATAACATCGGTGCAACA 59.246 39.130 0.98 0.00 39.98 3.33
24 25 4.397730 TGCTTTATAACATCGGTGCAACAT 59.602 37.500 0.98 0.00 39.98 2.71
25 26 5.105957 TGCTTTATAACATCGGTGCAACATT 60.106 36.000 0.98 0.00 39.98 2.71
26 27 5.804979 GCTTTATAACATCGGTGCAACATTT 59.195 36.000 0.98 0.00 39.98 2.32
27 28 6.020678 GCTTTATAACATCGGTGCAACATTTC 60.021 38.462 0.98 0.00 39.98 2.17
28 29 2.723124 AACATCGGTGCAACATTTCC 57.277 45.000 0.98 0.00 39.98 3.13
29 30 0.887933 ACATCGGTGCAACATTTCCC 59.112 50.000 0.98 0.00 39.98 3.97
30 31 1.176527 CATCGGTGCAACATTTCCCT 58.823 50.000 0.98 0.00 39.98 4.20
31 32 1.545582 CATCGGTGCAACATTTCCCTT 59.454 47.619 0.98 0.00 39.98 3.95
32 33 1.243902 TCGGTGCAACATTTCCCTTC 58.756 50.000 0.98 0.00 39.98 3.46
33 34 0.958091 CGGTGCAACATTTCCCTTCA 59.042 50.000 0.98 0.00 39.98 3.02
34 35 1.335872 CGGTGCAACATTTCCCTTCAC 60.336 52.381 0.98 0.00 39.98 3.18
35 36 1.686052 GGTGCAACATTTCCCTTCACA 59.314 47.619 0.00 0.00 39.98 3.58
36 37 2.299867 GGTGCAACATTTCCCTTCACAT 59.700 45.455 0.00 0.00 39.98 3.21
37 38 3.244181 GGTGCAACATTTCCCTTCACATT 60.244 43.478 0.00 0.00 39.98 2.71
38 39 4.379652 GTGCAACATTTCCCTTCACATTT 58.620 39.130 0.00 0.00 36.32 2.32
39 40 4.815846 GTGCAACATTTCCCTTCACATTTT 59.184 37.500 0.00 0.00 36.32 1.82
40 41 4.815308 TGCAACATTTCCCTTCACATTTTG 59.185 37.500 0.00 0.00 0.00 2.44
41 42 5.055812 GCAACATTTCCCTTCACATTTTGA 58.944 37.500 0.00 0.00 0.00 2.69
42 43 5.178067 GCAACATTTCCCTTCACATTTTGAG 59.822 40.000 0.00 0.00 34.94 3.02
43 44 6.514947 CAACATTTCCCTTCACATTTTGAGA 58.485 36.000 0.00 0.00 34.94 3.27
44 45 6.729690 ACATTTCCCTTCACATTTTGAGAA 57.270 33.333 0.00 0.00 34.94 2.87
45 46 7.123355 ACATTTCCCTTCACATTTTGAGAAA 57.877 32.000 0.00 0.00 34.94 2.52
46 47 7.563906 ACATTTCCCTTCACATTTTGAGAAAA 58.436 30.769 0.00 0.00 32.56 2.29
47 48 7.495606 ACATTTCCCTTCACATTTTGAGAAAAC 59.504 33.333 0.00 0.00 32.56 2.43
48 49 6.537453 TTCCCTTCACATTTTGAGAAAACA 57.463 33.333 0.00 0.00 34.94 2.83
49 50 6.147864 TCCCTTCACATTTTGAGAAAACAG 57.852 37.500 0.00 0.00 34.94 3.16
50 51 5.656416 TCCCTTCACATTTTGAGAAAACAGT 59.344 36.000 0.00 0.00 34.94 3.55
51 52 5.979517 CCCTTCACATTTTGAGAAAACAGTC 59.020 40.000 0.00 0.00 34.94 3.51
52 53 6.405731 CCCTTCACATTTTGAGAAAACAGTCA 60.406 38.462 0.00 0.00 34.94 3.41
53 54 6.473455 CCTTCACATTTTGAGAAAACAGTCAC 59.527 38.462 0.00 0.00 34.94 3.67
54 55 6.507958 TCACATTTTGAGAAAACAGTCACA 57.492 33.333 0.00 0.00 32.37 3.58
55 56 6.918626 TCACATTTTGAGAAAACAGTCACAA 58.081 32.000 0.00 0.00 32.37 3.33
56 57 6.806249 TCACATTTTGAGAAAACAGTCACAAC 59.194 34.615 0.00 0.00 32.37 3.32
57 58 6.585702 CACATTTTGAGAAAACAGTCACAACA 59.414 34.615 0.00 0.00 32.37 3.33
58 59 7.276218 CACATTTTGAGAAAACAGTCACAACAT 59.724 33.333 0.00 0.00 32.37 2.71
59 60 7.489113 ACATTTTGAGAAAACAGTCACAACATC 59.511 33.333 0.00 0.00 32.37 3.06
60 61 6.507958 TTTGAGAAAACAGTCACAACATCA 57.492 33.333 0.00 0.00 29.40 3.07
61 62 6.507958 TTGAGAAAACAGTCACAACATCAA 57.492 33.333 0.00 0.00 0.00 2.57
62 63 6.507958 TGAGAAAACAGTCACAACATCAAA 57.492 33.333 0.00 0.00 0.00 2.69
63 64 6.321717 TGAGAAAACAGTCACAACATCAAAC 58.678 36.000 0.00 0.00 0.00 2.93
64 65 5.650543 AGAAAACAGTCACAACATCAAACC 58.349 37.500 0.00 0.00 0.00 3.27
65 66 3.691049 AACAGTCACAACATCAAACCG 57.309 42.857 0.00 0.00 0.00 4.44
66 67 1.946768 ACAGTCACAACATCAAACCGG 59.053 47.619 0.00 0.00 0.00 5.28
70 71 1.944024 TCACAACATCAAACCGGACAC 59.056 47.619 9.46 0.00 0.00 3.67
72 73 2.098280 CACAACATCAAACCGGACACAA 59.902 45.455 9.46 0.00 0.00 3.33
89 90 2.007636 ACAACATTTCCCCTGGGGTAT 58.992 47.619 30.69 21.38 44.74 2.73
99 100 3.598782 TCCCCTGGGGTATGTAACATTTT 59.401 43.478 30.69 0.00 44.74 1.82
100 101 3.958147 CCCCTGGGGTATGTAACATTTTC 59.042 47.826 24.54 0.00 38.25 2.29
101 102 3.958147 CCCTGGGGTATGTAACATTTTCC 59.042 47.826 4.27 0.00 0.00 3.13
108 109 5.298527 GGGTATGTAACATTTTCCCTAGTGC 59.701 44.000 0.00 0.00 0.00 4.40
109 110 5.298527 GGTATGTAACATTTTCCCTAGTGCC 59.701 44.000 0.00 0.00 0.00 5.01
111 112 4.730966 TGTAACATTTTCCCTAGTGCCAA 58.269 39.130 0.00 0.00 0.00 4.52
119 120 6.926630 TTTTCCCTAGTGCCAACATAAATT 57.073 33.333 0.00 0.00 0.00 1.82
123 124 5.652014 TCCCTAGTGCCAACATAAATTCTTG 59.348 40.000 0.00 0.00 0.00 3.02
140 141 8.947055 AAATTCTTGTGTATGCAATAAATCCC 57.053 30.769 0.00 0.00 0.00 3.85
141 142 6.463995 TTCTTGTGTATGCAATAAATCCCC 57.536 37.500 0.00 0.00 0.00 4.81
142 143 4.578516 TCTTGTGTATGCAATAAATCCCCG 59.421 41.667 0.00 0.00 0.00 5.73
143 144 3.892284 TGTGTATGCAATAAATCCCCGT 58.108 40.909 0.00 0.00 0.00 5.28
144 145 3.880490 TGTGTATGCAATAAATCCCCGTC 59.120 43.478 0.00 0.00 0.00 4.79
145 146 3.252458 GTGTATGCAATAAATCCCCGTCC 59.748 47.826 0.00 0.00 0.00 4.79
146 147 1.995376 ATGCAATAAATCCCCGTCCC 58.005 50.000 0.00 0.00 0.00 4.46
150 151 2.224917 GCAATAAATCCCCGTCCCCATA 60.225 50.000 0.00 0.00 0.00 2.74
154 155 1.405272 AATCCCCGTCCCCATACGTC 61.405 60.000 0.00 0.00 41.27 4.34
163 164 1.135527 TCCCCATACGTCGTAGCAAAG 59.864 52.381 11.31 0.00 0.00 2.77
165 166 2.460918 CCCATACGTCGTAGCAAAGAG 58.539 52.381 11.31 0.00 0.00 2.85
174 175 3.437049 GTCGTAGCAAAGAGGCTGAAAAT 59.563 43.478 0.00 0.00 45.44 1.82
207 214 3.888934 ACATAAAAACTGACGCAAGCAG 58.111 40.909 0.00 0.00 43.80 4.24
223 230 0.038983 GCAGCATGTGTGACAATGCA 60.039 50.000 24.02 6.25 39.31 3.96
249 257 2.097925 GCAACAAAGAAACACATTCGCG 60.098 45.455 0.00 0.00 43.15 5.87
254 269 1.732941 AGAAACACATTCGCGGCATA 58.267 45.000 6.13 0.00 43.15 3.14
265 280 1.134220 TCGCGGCATAAGAAAATCCCT 60.134 47.619 6.13 0.00 0.00 4.20
283 298 1.676014 CCTTTGAAGCCTACACCCGAG 60.676 57.143 0.00 0.00 0.00 4.63
312 327 3.429547 CCAAGATGACTAACCTCTGACCG 60.430 52.174 0.00 0.00 0.00 4.79
340 355 0.802607 GGAGGCAACGAGTTCGCTAG 60.803 60.000 0.73 0.00 44.43 3.42
381 396 2.359850 AGCGCCGGATCAAGCAAA 60.360 55.556 5.05 0.00 0.00 3.68
518 545 1.073923 ACGCCACAAGGAGGAAGAATT 59.926 47.619 0.00 0.00 39.30 2.17
545 575 2.958739 TAGGGGAGGAGGGCAGGT 60.959 66.667 0.00 0.00 0.00 4.00
561 591 2.938756 GCAGGTTTGGATGAGGACTCAG 60.939 54.545 8.14 0.00 43.61 3.35
668 705 3.187227 CCTCGACCAGTCAATTGTTTGAG 59.813 47.826 5.13 4.85 42.41 3.02
734 771 4.202202 TGGTTTAACCTTGCATTTCACCTG 60.202 41.667 15.68 0.00 39.58 4.00
737 774 3.457610 AACCTTGCATTTCACCTGTTG 57.542 42.857 0.00 0.00 0.00 3.33
740 777 3.181476 ACCTTGCATTTCACCTGTTGTTC 60.181 43.478 0.00 0.00 0.00 3.18
774 811 9.245962 CATATAGAAGGTCGTAAGTAAAACCAG 57.754 37.037 0.00 0.00 34.09 4.00
842 883 2.884639 GCAAAGGCCACTGAAACTAGAA 59.115 45.455 5.01 0.00 0.00 2.10
898 952 5.873164 GGAAATCTAACGAAAAGAGGTAGCA 59.127 40.000 0.00 0.00 0.00 3.49
899 953 6.036191 GGAAATCTAACGAAAAGAGGTAGCAG 59.964 42.308 0.00 0.00 0.00 4.24
937 991 3.006967 TCACAGTACAGGCTCTTTTCCTC 59.993 47.826 0.00 0.00 0.00 3.71
941 995 4.162320 CAGTACAGGCTCTTTTCCTCCATA 59.838 45.833 0.00 0.00 0.00 2.74
958 1012 5.353394 TCCATACACCCTAAACTAGCTTG 57.647 43.478 0.00 0.00 0.00 4.01
959 1013 3.877508 CCATACACCCTAAACTAGCTTGC 59.122 47.826 0.00 0.00 0.00 4.01
960 1014 4.513442 CATACACCCTAAACTAGCTTGCA 58.487 43.478 0.00 0.00 0.00 4.08
962 1016 3.412386 ACACCCTAAACTAGCTTGCAAG 58.588 45.455 22.44 22.44 0.00 4.01
964 1018 2.642807 ACCCTAAACTAGCTTGCAAGGA 59.357 45.455 27.10 0.00 0.00 3.36
965 1019 3.010420 CCCTAAACTAGCTTGCAAGGAC 58.990 50.000 27.10 12.00 0.00 3.85
966 1020 3.307762 CCCTAAACTAGCTTGCAAGGACT 60.308 47.826 27.10 18.38 0.00 3.85
967 1021 4.081087 CCCTAAACTAGCTTGCAAGGACTA 60.081 45.833 27.10 18.50 0.00 2.59
984 1038 3.452627 GGACTATATATGCACCCCCTCTG 59.547 52.174 0.00 0.00 0.00 3.35
1033 1087 5.741388 ACAAGAAGAGAAACACACATCAC 57.259 39.130 0.00 0.00 0.00 3.06
1078 1132 2.122783 TTCCGTCCATCACCATTTCC 57.877 50.000 0.00 0.00 0.00 3.13
1087 1141 1.533625 TCACCATTTCCTTTCCTGCG 58.466 50.000 0.00 0.00 0.00 5.18
1126 1180 7.575414 AACATCTCGACTCAGATATACAGTT 57.425 36.000 0.00 0.00 31.47 3.16
1140 1194 7.665145 CAGATATACAGTTGAGAGAGAGATGGA 59.335 40.741 0.00 0.00 0.00 3.41
1175 1229 4.899239 CCGGCGGCTCATCCTCAC 62.899 72.222 15.42 0.00 0.00 3.51
1283 1338 1.084370 GGAGGTCATGAACGGCTTCG 61.084 60.000 4.80 0.00 40.22 3.79
1432 1487 2.125512 CTCTACCGGCACACAGGC 60.126 66.667 0.00 0.00 39.93 4.85
1558 1613 2.429930 CTCAAGGTCCGGGTGCAA 59.570 61.111 0.00 0.00 0.00 4.08
1649 1707 2.124612 CCATGGCGATGGTCAGCA 60.125 61.111 18.96 0.00 43.98 4.41
1650 1708 2.184830 CCATGGCGATGGTCAGCAG 61.185 63.158 18.96 0.00 43.98 4.24
1660 1718 2.048784 GTCAGCAGCAGCAGACGA 60.049 61.111 10.72 0.00 45.34 4.20
1670 1728 4.838486 GCAGACGACCGCCTCTCG 62.838 72.222 0.00 0.00 37.17 4.04
1671 1729 3.125573 CAGACGACCGCCTCTCGA 61.126 66.667 0.00 0.00 41.67 4.04
1676 1734 1.153823 CGACCGCCTCTCGACAATT 60.154 57.895 0.00 0.00 41.67 2.32
1688 1746 5.064452 CCTCTCGACAATTTCCAAGAATCAG 59.936 44.000 0.00 0.00 0.00 2.90
1694 1752 6.246420 ACAATTTCCAAGAATCAGAAGACG 57.754 37.500 0.00 0.00 0.00 4.18
1695 1753 5.182001 ACAATTTCCAAGAATCAGAAGACGG 59.818 40.000 0.00 0.00 0.00 4.79
1696 1754 4.351874 TTTCCAAGAATCAGAAGACGGT 57.648 40.909 0.00 0.00 0.00 4.83
1698 1756 2.028112 TCCAAGAATCAGAAGACGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
1699 1757 1.734465 CAAGAATCAGAAGACGGTGGC 59.266 52.381 0.00 0.00 0.00 5.01
1703 1761 1.532604 ATCAGAAGACGGTGGCGACA 61.533 55.000 0.00 0.00 38.70 4.35
1722 1780 0.883814 AACGACGACGAGAGAGGTGT 60.884 55.000 15.32 0.00 42.66 4.16
1729 1787 2.678324 GACGAGAGAGGTGTTTTCAGG 58.322 52.381 0.00 0.00 0.00 3.86
1747 1805 1.007502 GCGAGCTCTGATCGATGCT 60.008 57.895 12.85 4.91 42.76 3.79
1753 1811 0.319727 CTCTGATCGATGCTGAGCCC 60.320 60.000 0.54 0.00 0.00 5.19
1795 1853 2.588314 GAGCTGATCGCCTGGCTG 60.588 66.667 17.92 10.52 40.39 4.85
2062 2120 3.325293 TCAGACAACATGAAGCTCCTC 57.675 47.619 0.00 0.00 0.00 3.71
2113 2171 2.472029 AGGGTCCTGATTGTTCTCGAT 58.528 47.619 0.00 0.00 0.00 3.59
2116 2174 3.181461 GGGTCCTGATTGTTCTCGATGAT 60.181 47.826 0.00 0.00 0.00 2.45
2135 2193 4.557605 TCGACGATTACGCGGGCC 62.558 66.667 12.47 0.00 43.96 5.80
2137 2195 2.657620 GACGATTACGCGGGCCTC 60.658 66.667 12.47 0.17 43.96 4.70
2299 2357 1.673665 GAGAGCAGTGGCCCTTGTG 60.674 63.158 0.00 0.00 42.56 3.33
2300 2358 2.116983 GAGAGCAGTGGCCCTTGTGA 62.117 60.000 0.00 0.00 42.56 3.58
2326 2384 3.676873 GCAATTTTCAGGATGGCGATGTT 60.677 43.478 0.00 0.00 36.16 2.71
2331 2389 3.279875 GGATGGCGATGTTCGGGC 61.280 66.667 0.00 0.00 40.84 6.13
2481 2554 2.654404 GGCCGACGACGATAGCAC 60.654 66.667 9.28 0.00 42.66 4.40
2489 2562 3.666374 CGACGACGATAGCACCTATAACC 60.666 52.174 0.00 0.00 42.66 2.85
2491 2564 3.887716 ACGACGATAGCACCTATAACCTT 59.112 43.478 0.00 0.00 42.67 3.50
2515 2588 9.125026 CTTAAGCAGATGGTTATGTTTTCCTAT 57.875 33.333 5.40 0.00 37.76 2.57
2531 2604 6.406692 TTTCCTATAGTGACATGCCTAGAC 57.593 41.667 0.00 0.00 0.00 2.59
2536 2609 2.251818 AGTGACATGCCTAGACAGTGT 58.748 47.619 0.00 0.00 0.00 3.55
2653 2730 3.654020 GCGGAAGGCGATCATGGC 61.654 66.667 0.00 0.00 0.00 4.40
2835 2912 0.879400 GTCGGCTCCATGATCTGCAG 60.879 60.000 7.63 7.63 0.00 4.41
3001 3078 1.813513 ATTTGAGCCTCAGGAACACG 58.186 50.000 0.00 0.00 0.00 4.49
3019 3096 1.236616 CGGATGTTTCTGCACTGCCA 61.237 55.000 0.00 0.00 0.00 4.92
3024 3101 0.936297 GTTTCTGCACTGCCAAAGCG 60.936 55.000 0.00 0.00 44.31 4.68
3031 3108 0.109597 CACTGCCAAAGCGAATCCAC 60.110 55.000 0.00 0.00 44.31 4.02
3033 3110 0.597568 CTGCCAAAGCGAATCCACAA 59.402 50.000 0.00 0.00 44.31 3.33
3089 3166 1.668419 CAAGATACAAGCCTTCCCCG 58.332 55.000 0.00 0.00 0.00 5.73
3107 3184 1.364626 CGCAGATTTCGCCAAGCTCT 61.365 55.000 0.00 0.00 0.00 4.09
3151 3231 1.904771 CCGTGCAGACTTATCCCCA 59.095 57.895 0.00 0.00 0.00 4.96
3181 3261 2.679837 CACCATCAACTCCAAGGAATCG 59.320 50.000 0.00 0.00 0.00 3.34
3250 3330 2.416027 CCTGGAGATACTGTCACACGTG 60.416 54.545 15.48 15.48 0.00 4.49
3260 3340 2.131067 TCACACGTGCAGGTCTCCA 61.131 57.895 17.22 0.00 0.00 3.86
3268 3348 1.915769 GCAGGTCTCCAGGAGTGGT 60.916 63.158 16.65 0.00 45.28 4.16
3276 3356 2.110188 TCTCCAGGAGTGGTAGTGAGTT 59.890 50.000 16.65 0.00 45.28 3.01
3281 3361 3.259374 CAGGAGTGGTAGTGAGTTGATGT 59.741 47.826 0.00 0.00 0.00 3.06
3283 3363 3.997021 GGAGTGGTAGTGAGTTGATGTTG 59.003 47.826 0.00 0.00 0.00 3.33
3302 3382 1.312815 GATGGATGTTGGGCAGCTAC 58.687 55.000 0.00 0.00 33.29 3.58
3448 3528 2.340443 GGCGATGAGACCGATCCC 59.660 66.667 0.00 0.00 0.00 3.85
3491 3571 3.593328 AGAGAATCCATTTTCACCTCCCA 59.407 43.478 0.00 0.00 33.66 4.37
3592 3672 0.973632 AGATTACCCTGCGTGACACA 59.026 50.000 6.37 0.00 0.00 3.72
3600 3680 1.005037 TGCGTGACACATCCCTGAC 60.005 57.895 6.37 0.00 0.00 3.51
3632 3712 1.289066 CGACTCCTCGGCAAACTCA 59.711 57.895 0.00 0.00 36.16 3.41
3633 3713 1.009389 CGACTCCTCGGCAAACTCAC 61.009 60.000 0.00 0.00 36.16 3.51
3772 3852 1.839424 TCATCTTCGAGAGTGGAGCA 58.161 50.000 0.00 0.00 0.00 4.26
4030 4117 2.206815 TGTGTGAGTGTTTGCAATGC 57.793 45.000 0.00 0.00 0.00 3.56
4035 4122 1.943340 TGAGTGTTTGCAATGCGTGTA 59.057 42.857 0.00 0.00 0.00 2.90
4036 4123 2.286713 TGAGTGTTTGCAATGCGTGTAC 60.287 45.455 0.00 0.00 0.00 2.90
4037 4124 1.946768 AGTGTTTGCAATGCGTGTACT 59.053 42.857 0.00 0.00 0.00 2.73
4038 4125 2.357637 AGTGTTTGCAATGCGTGTACTT 59.642 40.909 0.00 0.00 0.00 2.24
4136 4223 2.432510 TGATATGCATGTACCGTGTGGA 59.567 45.455 10.16 0.00 39.21 4.02
4232 4322 0.591659 GCTGGAACCGGTTTCACTTC 59.408 55.000 24.93 12.47 35.70 3.01
4267 4357 0.250295 GTACCTTCAGTGCTGCACCA 60.250 55.000 27.74 13.24 34.49 4.17
4345 4451 5.238583 AGGAGGTTTGAAAGTTGAGATACG 58.761 41.667 0.00 0.00 0.00 3.06
4366 4477 5.949735 ACGTTGTGGGAATGAAATATGAAC 58.050 37.500 0.00 0.00 0.00 3.18
4480 4604 2.070783 GGCATGTTTGTGGCAAATGAG 58.929 47.619 0.00 0.00 43.52 2.90
4514 4638 3.421844 AGGAGGCACTTTATTGGACAAC 58.578 45.455 0.00 0.00 41.55 3.32
4882 5183 4.898861 ACAAAGGAACAAGATAAAGCCCAA 59.101 37.500 0.00 0.00 0.00 4.12
4900 5201 8.831715 AAGCCCAAAAACTTTGATATTGTTAG 57.168 30.769 0.69 0.00 0.00 2.34
4901 5202 6.873605 AGCCCAAAAACTTTGATATTGTTAGC 59.126 34.615 0.69 0.00 0.00 3.09
4903 5204 7.387673 GCCCAAAAACTTTGATATTGTTAGCTT 59.612 33.333 0.00 0.00 0.00 3.74
4904 5205 8.711457 CCCAAAAACTTTGATATTGTTAGCTTG 58.289 33.333 0.00 0.00 0.00 4.01
4905 5206 8.223100 CCAAAAACTTTGATATTGTTAGCTTGC 58.777 33.333 0.00 0.00 0.00 4.01
4906 5207 7.889589 AAAACTTTGATATTGTTAGCTTGCC 57.110 32.000 0.00 0.00 0.00 4.52
4907 5208 6.588719 AACTTTGATATTGTTAGCTTGCCA 57.411 33.333 0.00 0.00 0.00 4.92
4908 5209 6.588719 ACTTTGATATTGTTAGCTTGCCAA 57.411 33.333 0.00 0.00 0.00 4.52
4909 5210 7.174107 ACTTTGATATTGTTAGCTTGCCAAT 57.826 32.000 0.00 0.70 33.62 3.16
4910 5211 7.614494 ACTTTGATATTGTTAGCTTGCCAATT 58.386 30.769 9.55 1.19 31.63 2.32
4911 5212 7.546667 ACTTTGATATTGTTAGCTTGCCAATTG 59.453 33.333 9.55 0.00 31.63 2.32
4912 5213 5.904941 TGATATTGTTAGCTTGCCAATTGG 58.095 37.500 20.81 20.81 38.53 3.16
4913 5214 5.655974 TGATATTGTTAGCTTGCCAATTGGA 59.344 36.000 29.02 10.48 37.39 3.53
4914 5215 3.658757 TTGTTAGCTTGCCAATTGGAC 57.341 42.857 29.02 18.76 37.39 4.02
4915 5216 2.591923 TGTTAGCTTGCCAATTGGACA 58.408 42.857 29.02 21.07 37.39 4.02
4916 5217 2.961741 TGTTAGCTTGCCAATTGGACAA 59.038 40.909 29.02 25.82 37.39 3.18
4917 5218 3.005684 TGTTAGCTTGCCAATTGGACAAG 59.994 43.478 34.03 34.03 44.56 3.16
4918 5219 1.708341 AGCTTGCCAATTGGACAAGT 58.292 45.000 35.66 27.25 44.10 3.16
4919 5220 2.041701 AGCTTGCCAATTGGACAAGTT 58.958 42.857 35.66 32.19 44.10 2.66
4920 5221 3.230134 AGCTTGCCAATTGGACAAGTTA 58.770 40.909 35.66 18.93 44.10 2.24
4921 5222 3.640967 AGCTTGCCAATTGGACAAGTTAA 59.359 39.130 35.66 18.68 44.10 2.01
4922 5223 4.100808 AGCTTGCCAATTGGACAAGTTAAA 59.899 37.500 35.66 18.21 44.10 1.52
4923 5224 4.448732 GCTTGCCAATTGGACAAGTTAAAG 59.551 41.667 35.66 23.83 44.10 1.85
4924 5225 3.988819 TGCCAATTGGACAAGTTAAAGC 58.011 40.909 29.02 8.23 37.39 3.51
4925 5226 3.244044 TGCCAATTGGACAAGTTAAAGCC 60.244 43.478 29.02 5.83 37.39 4.35
4926 5227 3.244044 GCCAATTGGACAAGTTAAAGCCA 60.244 43.478 29.02 0.00 37.39 4.75
4927 5228 4.742138 GCCAATTGGACAAGTTAAAGCCAA 60.742 41.667 29.02 0.00 42.23 4.52
4928 5229 5.363939 CCAATTGGACAAGTTAAAGCCAAA 58.636 37.500 20.50 0.00 41.45 3.28
4929 5230 5.819901 CCAATTGGACAAGTTAAAGCCAAAA 59.180 36.000 20.50 0.00 41.45 2.44
4930 5231 6.317391 CCAATTGGACAAGTTAAAGCCAAAAA 59.683 34.615 20.50 0.00 41.45 1.94
4931 5232 6.918892 ATTGGACAAGTTAAAGCCAAAAAC 57.081 33.333 0.00 0.00 41.45 2.43
4932 5233 5.669164 TGGACAAGTTAAAGCCAAAAACT 57.331 34.783 0.00 0.00 35.01 2.66
4933 5234 6.043854 TGGACAAGTTAAAGCCAAAAACTT 57.956 33.333 0.00 0.00 42.60 2.66
4934 5235 6.468543 TGGACAAGTTAAAGCCAAAAACTTT 58.531 32.000 0.00 0.00 40.52 2.66
4935 5236 6.370166 TGGACAAGTTAAAGCCAAAAACTTTG 59.630 34.615 0.00 0.00 40.52 2.77
4936 5237 6.592220 GGACAAGTTAAAGCCAAAAACTTTGA 59.408 34.615 0.69 0.00 40.52 2.69
4937 5238 7.201522 GGACAAGTTAAAGCCAAAAACTTTGAG 60.202 37.037 0.69 0.00 40.52 3.02
4963 5264 4.584325 TCTTAGCTTGCCAATTGAACAAGT 59.416 37.500 27.53 20.60 42.20 3.16
4978 5279 7.971183 TTGAACAAGTTAAAGCCAAAAACTT 57.029 28.000 0.00 0.00 42.60 2.66
4979 5280 7.589574 TGAACAAGTTAAAGCCAAAAACTTC 57.410 32.000 0.00 0.00 40.52 3.01
4984 5289 8.357402 ACAAGTTAAAGCCAAAAACTTCGATAT 58.643 29.630 0.00 0.00 40.52 1.63
4987 5292 8.357402 AGTTAAAGCCAAAAACTTCGATATTGT 58.643 29.630 0.00 0.00 29.25 2.71
4988 5293 8.974408 GTTAAAGCCAAAAACTTCGATATTGTT 58.026 29.630 0.00 0.00 0.00 2.83
4996 5301 5.485662 AACTTCGATATTGTTAGCTTGCC 57.514 39.130 0.00 0.00 0.00 4.52
5004 5309 7.497579 TCGATATTGTTAGCTTGCCAATTAAGA 59.502 33.333 9.55 5.59 31.63 2.10
5007 5312 7.938140 ATTGTTAGCTTGCCAATTAAGACTA 57.062 32.000 0.00 0.00 0.00 2.59
5013 5318 4.494855 GCTTGCCAATTAAGACTAGAAGCG 60.495 45.833 0.00 0.00 0.00 4.68
5078 5387 8.782137 ATTATGTTTGGATTATGGCTAAAGGT 57.218 30.769 0.00 0.00 0.00 3.50
5089 5398 1.134189 GGCTAAAGGTCGCCCTACAAT 60.134 52.381 0.00 0.00 41.56 2.71
5093 5402 3.934457 AAAGGTCGCCCTACAATTTTG 57.066 42.857 0.00 0.00 41.56 2.44
5112 5424 3.840890 TGTTGTCGTGAGCAAAACTTT 57.159 38.095 0.00 0.00 0.00 2.66
5113 5425 4.948608 TGTTGTCGTGAGCAAAACTTTA 57.051 36.364 0.00 0.00 0.00 1.85
5116 5431 5.968848 TGTTGTCGTGAGCAAAACTTTAATC 59.031 36.000 0.00 0.00 0.00 1.75
5122 5437 5.977129 CGTGAGCAAAACTTTAATCCTTGTT 59.023 36.000 0.00 0.00 0.00 2.83
5124 5439 7.515059 CGTGAGCAAAACTTTAATCCTTGTTTG 60.515 37.037 0.00 0.00 33.61 2.93
5130 5445 5.405935 ACTTTAATCCTTGTTTGGATGGC 57.594 39.130 0.00 0.00 45.35 4.40
5132 5447 6.252995 ACTTTAATCCTTGTTTGGATGGCTA 58.747 36.000 0.00 0.00 45.35 3.93
5139 5454 4.020307 CCTTGTTTGGATGGCTACCAATTT 60.020 41.667 14.36 0.00 45.09 1.82
5142 5457 6.672266 TGTTTGGATGGCTACCAATTTTTA 57.328 33.333 14.36 0.37 45.09 1.52
5168 5483 4.156739 GCATGCCCTGGCTATTATAGTTTC 59.843 45.833 6.36 0.00 42.51 2.78
5176 5495 9.847224 CCCTGGCTATTATAGTTTCTTTTCTTA 57.153 33.333 0.94 0.00 0.00 2.10
5277 5596 4.947388 ACAAACTTGAGCTCTAACCAAACA 59.053 37.500 16.19 0.00 0.00 2.83
5291 5610 0.966179 CAAACACACCCTAAAGCCCC 59.034 55.000 0.00 0.00 0.00 5.80
5512 9102 1.228063 ACCATGGATCATCGCTGCC 60.228 57.895 21.47 0.00 0.00 4.85
5514 9104 1.596203 CATGGATCATCGCTGCCGT 60.596 57.895 0.00 0.00 35.54 5.68
5518 9108 2.124983 ATCATCGCTGCCGTTGCT 60.125 55.556 0.00 0.00 38.71 3.91
5569 9187 9.662947 AATAAGTTAATAACCCACTGTCACTAC 57.337 33.333 0.00 0.00 0.00 2.73
5605 9224 2.463876 GACGCACGGGGTTTAGTATAC 58.536 52.381 0.00 0.00 0.00 1.47
5646 9265 3.153781 TCCGCCATCATCGCCAGA 61.154 61.111 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.095610 GTTGCACCGATGTTATAAAGCAC 58.904 43.478 0.00 0.00 0.00 4.40
1 2 3.753797 TGTTGCACCGATGTTATAAAGCA 59.246 39.130 0.00 0.00 0.00 3.91
2 3 4.349663 TGTTGCACCGATGTTATAAAGC 57.650 40.909 0.00 0.00 0.00 3.51
3 4 6.472163 GGAAATGTTGCACCGATGTTATAAAG 59.528 38.462 0.00 0.00 0.00 1.85
4 5 6.326375 GGAAATGTTGCACCGATGTTATAAA 58.674 36.000 0.00 0.00 0.00 1.40
5 6 5.163602 GGGAAATGTTGCACCGATGTTATAA 60.164 40.000 0.00 0.00 0.00 0.98
6 7 4.336993 GGGAAATGTTGCACCGATGTTATA 59.663 41.667 0.00 0.00 0.00 0.98
7 8 3.130340 GGGAAATGTTGCACCGATGTTAT 59.870 43.478 0.00 0.00 0.00 1.89
8 9 2.490115 GGGAAATGTTGCACCGATGTTA 59.510 45.455 0.00 0.00 0.00 2.41
9 10 1.272212 GGGAAATGTTGCACCGATGTT 59.728 47.619 0.00 0.00 0.00 2.71
10 11 0.887933 GGGAAATGTTGCACCGATGT 59.112 50.000 0.00 0.00 0.00 3.06
11 12 1.176527 AGGGAAATGTTGCACCGATG 58.823 50.000 0.00 0.00 0.00 3.84
12 13 1.818674 GAAGGGAAATGTTGCACCGAT 59.181 47.619 0.00 0.00 0.00 4.18
13 14 1.243902 GAAGGGAAATGTTGCACCGA 58.756 50.000 0.00 0.00 0.00 4.69
14 15 0.958091 TGAAGGGAAATGTTGCACCG 59.042 50.000 0.00 0.00 0.00 4.94
15 16 1.686052 TGTGAAGGGAAATGTTGCACC 59.314 47.619 0.00 0.00 0.00 5.01
16 17 3.665745 ATGTGAAGGGAAATGTTGCAC 57.334 42.857 0.00 0.00 0.00 4.57
17 18 4.686191 AAATGTGAAGGGAAATGTTGCA 57.314 36.364 0.00 0.00 0.00 4.08
18 19 5.055812 TCAAAATGTGAAGGGAAATGTTGC 58.944 37.500 0.00 0.00 31.51 4.17
19 20 6.514947 TCTCAAAATGTGAAGGGAAATGTTG 58.485 36.000 0.00 0.00 35.22 3.33
20 21 6.729690 TCTCAAAATGTGAAGGGAAATGTT 57.270 33.333 0.00 0.00 35.22 2.71
21 22 6.729690 TTCTCAAAATGTGAAGGGAAATGT 57.270 33.333 0.00 0.00 35.22 2.71
22 23 7.495279 TGTTTTCTCAAAATGTGAAGGGAAATG 59.505 33.333 0.00 0.00 35.22 2.32
23 24 7.563906 TGTTTTCTCAAAATGTGAAGGGAAAT 58.436 30.769 0.00 0.00 35.22 2.17
24 25 6.940739 TGTTTTCTCAAAATGTGAAGGGAAA 58.059 32.000 0.00 0.00 35.22 3.13
25 26 6.154363 ACTGTTTTCTCAAAATGTGAAGGGAA 59.846 34.615 0.00 0.00 35.22 3.97
26 27 5.656416 ACTGTTTTCTCAAAATGTGAAGGGA 59.344 36.000 0.00 0.00 35.22 4.20
27 28 5.906073 ACTGTTTTCTCAAAATGTGAAGGG 58.094 37.500 0.00 0.00 35.22 3.95
28 29 6.473455 GTGACTGTTTTCTCAAAATGTGAAGG 59.527 38.462 0.00 0.00 35.22 3.46
29 30 7.028962 TGTGACTGTTTTCTCAAAATGTGAAG 58.971 34.615 0.00 0.00 35.22 3.02
30 31 6.918626 TGTGACTGTTTTCTCAAAATGTGAA 58.081 32.000 0.00 0.00 35.22 3.18
31 32 6.507958 TGTGACTGTTTTCTCAAAATGTGA 57.492 33.333 0.00 0.00 32.22 3.58
32 33 6.585702 TGTTGTGACTGTTTTCTCAAAATGTG 59.414 34.615 0.00 0.00 32.36 3.21
33 34 6.686630 TGTTGTGACTGTTTTCTCAAAATGT 58.313 32.000 0.00 0.00 32.36 2.71
34 35 7.488792 TGATGTTGTGACTGTTTTCTCAAAATG 59.511 33.333 0.00 0.00 30.48 2.32
35 36 7.546358 TGATGTTGTGACTGTTTTCTCAAAAT 58.454 30.769 0.00 0.00 32.17 1.82
36 37 6.918626 TGATGTTGTGACTGTTTTCTCAAAA 58.081 32.000 0.00 0.00 32.36 2.44
37 38 6.507958 TGATGTTGTGACTGTTTTCTCAAA 57.492 33.333 0.00 0.00 32.36 2.69
38 39 6.507958 TTGATGTTGTGACTGTTTTCTCAA 57.492 33.333 0.00 0.00 0.00 3.02
39 40 6.321717 GTTTGATGTTGTGACTGTTTTCTCA 58.678 36.000 0.00 0.00 0.00 3.27
40 41 5.743872 GGTTTGATGTTGTGACTGTTTTCTC 59.256 40.000 0.00 0.00 0.00 2.87
41 42 5.650543 GGTTTGATGTTGTGACTGTTTTCT 58.349 37.500 0.00 0.00 0.00 2.52
42 43 4.499040 CGGTTTGATGTTGTGACTGTTTTC 59.501 41.667 0.00 0.00 0.00 2.29
43 44 4.420168 CGGTTTGATGTTGTGACTGTTTT 58.580 39.130 0.00 0.00 0.00 2.43
44 45 3.181491 CCGGTTTGATGTTGTGACTGTTT 60.181 43.478 0.00 0.00 0.00 2.83
45 46 2.357637 CCGGTTTGATGTTGTGACTGTT 59.642 45.455 0.00 0.00 0.00 3.16
46 47 1.946768 CCGGTTTGATGTTGTGACTGT 59.053 47.619 0.00 0.00 0.00 3.55
47 48 2.032030 GTCCGGTTTGATGTTGTGACTG 60.032 50.000 0.00 0.00 0.00 3.51
48 49 2.218603 GTCCGGTTTGATGTTGTGACT 58.781 47.619 0.00 0.00 0.00 3.41
49 50 1.944024 TGTCCGGTTTGATGTTGTGAC 59.056 47.619 0.00 0.00 0.00 3.67
50 51 1.944024 GTGTCCGGTTTGATGTTGTGA 59.056 47.619 0.00 0.00 0.00 3.58
51 52 1.673400 TGTGTCCGGTTTGATGTTGTG 59.327 47.619 0.00 0.00 0.00 3.33
52 53 2.045561 TGTGTCCGGTTTGATGTTGT 57.954 45.000 0.00 0.00 0.00 3.32
53 54 2.098280 TGTTGTGTCCGGTTTGATGTTG 59.902 45.455 0.00 0.00 0.00 3.33
54 55 2.370349 TGTTGTGTCCGGTTTGATGTT 58.630 42.857 0.00 0.00 0.00 2.71
55 56 2.045561 TGTTGTGTCCGGTTTGATGT 57.954 45.000 0.00 0.00 0.00 3.06
56 57 3.641437 AATGTTGTGTCCGGTTTGATG 57.359 42.857 0.00 0.00 0.00 3.07
57 58 3.005367 GGAAATGTTGTGTCCGGTTTGAT 59.995 43.478 0.00 0.00 0.00 2.57
58 59 2.359531 GGAAATGTTGTGTCCGGTTTGA 59.640 45.455 0.00 0.00 0.00 2.69
59 60 2.544903 GGGAAATGTTGTGTCCGGTTTG 60.545 50.000 0.00 0.00 31.73 2.93
60 61 1.684450 GGGAAATGTTGTGTCCGGTTT 59.316 47.619 0.00 0.00 31.73 3.27
61 62 1.324383 GGGAAATGTTGTGTCCGGTT 58.676 50.000 0.00 0.00 31.73 4.44
62 63 0.538746 GGGGAAATGTTGTGTCCGGT 60.539 55.000 0.00 0.00 31.73 5.28
63 64 0.251165 AGGGGAAATGTTGTGTCCGG 60.251 55.000 0.00 0.00 31.73 5.14
64 65 0.881118 CAGGGGAAATGTTGTGTCCG 59.119 55.000 0.00 0.00 31.73 4.79
65 66 1.256812 CCAGGGGAAATGTTGTGTCC 58.743 55.000 0.00 0.00 0.00 4.02
66 67 1.256812 CCCAGGGGAAATGTTGTGTC 58.743 55.000 0.00 0.00 37.50 3.67
89 90 4.374689 TGGCACTAGGGAAAATGTTACA 57.625 40.909 0.00 0.00 0.00 2.41
99 100 5.450818 AGAATTTATGTTGGCACTAGGGA 57.549 39.130 0.00 0.00 0.00 4.20
100 101 5.418840 ACAAGAATTTATGTTGGCACTAGGG 59.581 40.000 0.00 0.00 0.00 3.53
101 102 6.071952 ACACAAGAATTTATGTTGGCACTAGG 60.072 38.462 0.00 0.00 0.00 3.02
108 109 8.706492 ATTGCATACACAAGAATTTATGTTGG 57.294 30.769 0.00 0.00 31.96 3.77
119 120 4.578516 CGGGGATTTATTGCATACACAAGA 59.421 41.667 0.00 0.00 31.96 3.02
123 124 3.252458 GGACGGGGATTTATTGCATACAC 59.748 47.826 0.00 0.00 0.00 2.90
142 143 0.457035 TTGCTACGACGTATGGGGAC 59.543 55.000 8.39 0.00 0.00 4.46
143 144 1.135527 CTTTGCTACGACGTATGGGGA 59.864 52.381 8.39 0.00 0.00 4.81
144 145 1.135527 TCTTTGCTACGACGTATGGGG 59.864 52.381 8.39 0.00 0.00 4.96
145 146 2.460918 CTCTTTGCTACGACGTATGGG 58.539 52.381 8.39 0.00 0.00 4.00
146 147 2.460918 CCTCTTTGCTACGACGTATGG 58.539 52.381 8.39 0.00 0.00 2.74
150 151 0.388649 CAGCCTCTTTGCTACGACGT 60.389 55.000 5.52 5.52 40.32 4.34
154 155 3.189287 ACATTTTCAGCCTCTTTGCTACG 59.811 43.478 0.00 0.00 40.32 3.51
163 164 3.066621 TGTGAACACACATTTTCAGCCTC 59.933 43.478 3.39 0.00 39.23 4.70
165 166 3.435105 TGTGAACACACATTTTCAGCC 57.565 42.857 3.39 0.00 39.23 4.85
168 169 8.763049 TTTTATGTTGTGAACACACATTTTCA 57.237 26.923 19.27 9.55 45.50 2.69
174 175 6.804295 GTCAGTTTTTATGTTGTGAACACACA 59.196 34.615 7.16 9.26 45.50 3.72
190 197 0.455410 TGCTGCTTGCGTCAGTTTTT 59.545 45.000 0.00 0.00 46.63 1.94
207 214 1.339235 GCGTGCATTGTCACACATGC 61.339 55.000 14.50 14.50 37.82 4.06
223 230 1.201181 TGTGTTTCTTTGTTGCTGCGT 59.799 42.857 0.00 0.00 0.00 5.24
249 257 5.111989 GCTTCAAAGGGATTTTCTTATGCC 58.888 41.667 0.00 0.00 36.35 4.40
254 269 5.243954 GTGTAGGCTTCAAAGGGATTTTCTT 59.756 40.000 0.00 0.00 0.00 2.52
265 280 1.275291 CTCTCGGGTGTAGGCTTCAAA 59.725 52.381 0.00 0.00 0.00 2.69
283 298 3.970640 AGGTTAGTCATCTTGGGGATCTC 59.029 47.826 0.00 0.00 31.27 2.75
312 327 2.973082 GTTGCCTCCATTGTGGGC 59.027 61.111 9.35 9.35 45.45 5.36
359 374 1.522355 CTTGATCCGGCGCTGACAT 60.522 57.895 20.25 9.25 0.00 3.06
381 396 1.425066 TGCAGAGGAATGGAACCAAGT 59.575 47.619 0.00 0.00 0.00 3.16
518 545 1.569548 CTCCTCCCCTAGTACCACTCA 59.430 57.143 0.00 0.00 0.00 3.41
545 575 1.339438 GCAGCTGAGTCCTCATCCAAA 60.339 52.381 20.43 0.00 39.13 3.28
561 591 2.883253 GTCGCCTCTCTTCGCAGC 60.883 66.667 0.00 0.00 0.00 5.25
694 731 9.071221 GGTTAAACCAAAAGAAAAATGCAAAAG 57.929 29.630 0.00 0.00 38.42 2.27
702 739 7.929941 ATGCAAGGTTAAACCAAAAGAAAAA 57.070 28.000 0.00 0.00 41.95 1.94
756 793 8.907222 TTAAATTCTGGTTTTACTTACGACCT 57.093 30.769 0.00 0.00 33.33 3.85
797 834 2.027100 GCCAGGGTAGGGTGATAATAGC 60.027 54.545 0.00 0.00 0.00 2.97
842 883 4.765273 TCGTGTACAAGGATGCATATGTT 58.235 39.130 15.02 0.55 0.00 2.71
937 991 3.877508 GCAAGCTAGTTTAGGGTGTATGG 59.122 47.826 0.00 0.00 0.00 2.74
941 995 3.412386 CTTGCAAGCTAGTTTAGGGTGT 58.588 45.455 14.65 0.00 0.00 4.16
958 1012 3.610911 GGGGTGCATATATAGTCCTTGC 58.389 50.000 0.00 0.00 0.00 4.01
959 1013 3.846588 AGGGGGTGCATATATAGTCCTTG 59.153 47.826 0.00 0.00 0.00 3.61
960 1014 4.104831 GAGGGGGTGCATATATAGTCCTT 58.895 47.826 0.00 0.00 0.00 3.36
962 1016 3.452627 CAGAGGGGGTGCATATATAGTCC 59.547 52.174 0.00 0.00 0.00 3.85
964 1018 2.840651 GCAGAGGGGGTGCATATATAGT 59.159 50.000 0.00 0.00 40.86 2.12
965 1019 2.840038 TGCAGAGGGGGTGCATATATAG 59.160 50.000 0.00 0.00 45.96 1.31
966 1020 2.914536 TGCAGAGGGGGTGCATATATA 58.085 47.619 0.00 0.00 45.96 0.86
967 1021 1.746157 TGCAGAGGGGGTGCATATAT 58.254 50.000 0.00 0.00 45.96 0.86
984 1038 1.062880 TCCTTGTTCGTTTCGTGTTGC 59.937 47.619 0.00 0.00 0.00 4.17
1033 1087 0.317436 GATGAGCAGGAGAGCGTACG 60.317 60.000 11.84 11.84 40.15 3.67
1078 1132 0.319555 TCTCGGTTGTCGCAGGAAAG 60.320 55.000 0.00 0.00 39.05 2.62
1087 1141 5.270812 GAGATGTTTCTTTCTCGGTTGTC 57.729 43.478 0.00 0.00 30.30 3.18
1126 1180 3.913509 AGCTTCATCCATCTCTCTCTCA 58.086 45.455 0.00 0.00 0.00 3.27
1140 1194 2.187946 CTCGCCGGGAAGCTTCAT 59.812 61.111 27.02 0.00 0.00 2.57
1199 1253 4.357947 TGGTGGCTGCGTCTCGTC 62.358 66.667 0.00 0.00 0.00 4.20
1200 1254 4.664677 GTGGTGGCTGCGTCTCGT 62.665 66.667 0.00 0.00 0.00 4.18
1340 1395 1.787155 CTGAACCTCGTCGTTGTCTTG 59.213 52.381 0.00 0.00 0.00 3.02
1402 1457 1.471676 CGGTAGAGGTTGATGCAGTCC 60.472 57.143 0.00 0.00 0.00 3.85
1530 1585 0.389757 GACCTTGAGCTCCCGGATAC 59.610 60.000 21.35 10.58 0.00 2.24
1564 1619 4.544689 CTCAGCCGTCTCTCGCCG 62.545 72.222 0.00 0.00 38.35 6.46
1645 1703 3.117171 GGTCGTCTGCTGCTGCTG 61.117 66.667 17.00 15.94 40.48 4.41
1646 1704 4.731612 CGGTCGTCTGCTGCTGCT 62.732 66.667 17.00 0.00 40.48 4.24
1658 1716 0.736325 AAATTGTCGAGAGGCGGTCG 60.736 55.000 5.32 5.32 39.79 4.79
1660 1718 0.391263 GGAAATTGTCGAGAGGCGGT 60.391 55.000 0.00 0.00 39.79 5.68
1666 1724 5.793817 TCTGATTCTTGGAAATTGTCGAGA 58.206 37.500 0.00 0.00 0.00 4.04
1670 1728 6.310197 CGTCTTCTGATTCTTGGAAATTGTC 58.690 40.000 0.00 0.00 0.00 3.18
1671 1729 5.182001 CCGTCTTCTGATTCTTGGAAATTGT 59.818 40.000 0.00 0.00 0.00 2.71
1676 1734 3.557054 CCACCGTCTTCTGATTCTTGGAA 60.557 47.826 0.00 0.00 0.00 3.53
1688 1746 2.654912 CGTTGTCGCCACCGTCTTC 61.655 63.158 0.00 0.00 35.54 2.87
1694 1752 3.400590 GTCGTCGTTGTCGCCACC 61.401 66.667 0.00 0.00 36.96 4.61
1695 1753 3.749373 CGTCGTCGTTGTCGCCAC 61.749 66.667 0.00 0.00 36.96 5.01
1696 1754 3.867226 CTCGTCGTCGTTGTCGCCA 62.867 63.158 1.33 0.00 38.33 5.69
1698 1756 2.127496 TCTCGTCGTCGTTGTCGC 60.127 61.111 1.33 0.00 38.33 5.19
1699 1757 0.516727 CTCTCTCGTCGTCGTTGTCG 60.517 60.000 1.33 0.00 38.33 4.35
1703 1761 0.883814 ACACCTCTCTCGTCGTCGTT 60.884 55.000 1.33 0.00 38.33 3.85
1722 1780 1.737029 CGATCAGAGCTCGCCTGAAAA 60.737 52.381 8.37 0.00 43.07 2.29
1729 1787 1.007502 AGCATCGATCAGAGCTCGC 60.008 57.895 8.37 2.78 36.11 5.03
1753 1811 1.815003 GCACCTTCCTCCAAGATGTTG 59.185 52.381 0.00 0.00 33.29 3.33
1795 1853 0.955919 CACCGTCTCCTTTCTTGCCC 60.956 60.000 0.00 0.00 0.00 5.36
1923 1981 3.755112 TCCATACCTTGACGTTGAACA 57.245 42.857 0.00 0.00 0.00 3.18
1924 1982 4.092968 GTGATCCATACCTTGACGTTGAAC 59.907 45.833 0.00 0.00 0.00 3.18
2010 2068 0.037975 CAGCATGTCCTGGTTTTGGC 60.038 55.000 0.00 0.00 31.82 4.52
2024 2082 1.207811 TGATGATGTGTCGTCCAGCAT 59.792 47.619 3.00 3.00 41.30 3.79
2062 2120 2.587194 CGGCCTCGAATGCTCCAG 60.587 66.667 0.00 0.00 39.00 3.86
2071 2129 4.082523 CCTTCCAAGCGGCCTCGA 62.083 66.667 0.00 0.00 39.00 4.04
2113 2171 0.041576 CCGCGTAATCGTCGAGATCA 60.042 55.000 4.92 0.00 38.98 2.92
2116 2174 2.711311 CCCGCGTAATCGTCGAGA 59.289 61.111 4.92 0.00 38.23 4.04
2137 2195 1.476471 GCAATCCTGATCTGGTCCCAG 60.476 57.143 17.33 7.02 44.86 4.45
2299 2357 2.417787 GCCATCCTGAAAATTGCTGGTC 60.418 50.000 0.00 0.00 0.00 4.02
2300 2358 1.551883 GCCATCCTGAAAATTGCTGGT 59.448 47.619 0.00 0.00 0.00 4.00
2326 2384 2.421314 CTGCGTATGATGGCCCGA 59.579 61.111 0.00 0.00 0.00 5.14
2331 2389 3.030668 TGAGTATGCTGCGTATGATGG 57.969 47.619 4.68 0.00 0.00 3.51
2431 2489 0.767375 TTTCCTGCAGCTTCTCCAGT 59.233 50.000 8.66 0.00 0.00 4.00
2461 2519 2.638154 CTATCGTCGTCGGCCTCC 59.362 66.667 0.00 0.00 37.69 4.30
2489 2562 7.396540 AGGAAAACATAACCATCTGCTTAAG 57.603 36.000 0.00 0.00 0.00 1.85
2491 2564 9.778741 CTATAGGAAAACATAACCATCTGCTTA 57.221 33.333 0.00 0.00 0.00 3.09
2515 2588 3.431415 ACACTGTCTAGGCATGTCACTA 58.569 45.455 0.00 0.00 0.00 2.74
2531 2604 2.074576 CAGGAAGCACATCTGACACTG 58.925 52.381 0.00 0.00 0.00 3.66
2560 2633 2.093235 GTGATCTTGTGGGAGGAGAAGG 60.093 54.545 0.00 0.00 0.00 3.46
2835 2912 2.153645 TGATGTCACCAAGATGTGCAC 58.846 47.619 10.75 10.75 36.17 4.57
2936 3013 1.135859 GTTGTTCAGATGGCGCTTCTG 60.136 52.381 25.37 25.37 41.61 3.02
3001 3078 0.961019 TTGGCAGTGCAGAAACATCC 59.039 50.000 18.61 0.00 0.00 3.51
3013 3090 0.537143 TGTGGATTCGCTTTGGCAGT 60.537 50.000 0.00 0.00 38.60 4.40
3019 3096 0.242017 GCAGCTTGTGGATTCGCTTT 59.758 50.000 0.00 0.00 0.00 3.51
3024 3101 0.170561 CTGCTGCAGCTTGTGGATTC 59.829 55.000 36.61 6.97 42.66 2.52
3089 3166 0.807496 AAGAGCTTGGCGAAATCTGC 59.193 50.000 0.00 0.00 0.00 4.26
3145 3225 0.475632 TGGTGTCCTTGACTGGGGAT 60.476 55.000 0.00 0.00 33.89 3.85
3151 3231 2.039084 GGAGTTGATGGTGTCCTTGACT 59.961 50.000 0.00 0.00 33.15 3.41
3181 3261 4.398598 ATGCGCGGCGTGGAAAAC 62.399 61.111 24.46 3.15 0.00 2.43
3204 3284 4.562425 TCATGGCCCCGATTCCGC 62.562 66.667 0.00 0.00 0.00 5.54
3205 3285 2.281070 CTCATGGCCCCGATTCCG 60.281 66.667 0.00 0.00 0.00 4.30
3250 3330 0.614979 TACCACTCCTGGAGACCTGC 60.615 60.000 29.71 0.00 40.55 4.85
3260 3340 3.511477 ACATCAACTCACTACCACTCCT 58.489 45.455 0.00 0.00 0.00 3.69
3268 3348 6.053632 ACATCCATCAACATCAACTCACTA 57.946 37.500 0.00 0.00 0.00 2.74
3276 3356 2.101783 GCCCAACATCCATCAACATCA 58.898 47.619 0.00 0.00 0.00 3.07
3281 3361 0.040058 AGCTGCCCAACATCCATCAA 59.960 50.000 0.00 0.00 0.00 2.57
3283 3363 1.133976 AGTAGCTGCCCAACATCCATC 60.134 52.381 0.00 0.00 0.00 3.51
3302 3382 2.359531 CTCCTAGCTTCCGTACCTTGAG 59.640 54.545 0.00 0.00 0.00 3.02
3402 3482 3.056107 TCCAATTCGGATCGACAAAGAGT 60.056 43.478 0.00 0.00 39.64 3.24
3448 3528 5.128205 TCTTGATCCATGCTGAATGTAAGG 58.872 41.667 0.00 0.00 34.11 2.69
3491 3571 2.972713 TGTACAGGCTCTGGAGAAACTT 59.027 45.455 1.35 0.00 35.51 2.66
3534 3614 1.276859 TGTGATCCATGGAGGCAGCT 61.277 55.000 21.33 1.01 37.29 4.24
3600 3680 1.670087 GGAGTCGTATGGCATGATCCG 60.670 57.143 10.98 7.25 0.00 4.18
3661 3741 2.684001 TCATTTCGGCGTAGGACATT 57.316 45.000 6.85 0.00 0.00 2.71
3968 4048 1.424493 GCATGCAGGCTCGTACTGAC 61.424 60.000 17.57 0.00 38.20 3.51
4030 4117 6.909895 CACTGAGATCAATAGAGAAGTACACG 59.090 42.308 0.00 0.00 0.00 4.49
4035 4122 6.210385 ACACACACTGAGATCAATAGAGAAGT 59.790 38.462 0.00 0.00 0.00 3.01
4036 4123 6.629128 ACACACACTGAGATCAATAGAGAAG 58.371 40.000 0.00 0.00 0.00 2.85
4037 4124 6.596309 ACACACACTGAGATCAATAGAGAA 57.404 37.500 0.00 0.00 0.00 2.87
4038 4125 6.393171 CAACACACACTGAGATCAATAGAGA 58.607 40.000 0.00 0.00 0.00 3.10
4187 4277 8.397148 CAAAACCAAAGAAAAATTGTAGCACAT 58.603 29.630 0.00 0.00 0.00 3.21
4246 4336 1.151668 GTGCAGCACTGAAGGTACTG 58.848 55.000 18.92 0.00 40.86 2.74
4267 4357 4.524802 TTCTCCATTTAGACATGGCCAT 57.475 40.909 14.09 14.09 43.31 4.40
4335 4441 4.250464 TCATTCCCACAACGTATCTCAAC 58.750 43.478 0.00 0.00 0.00 3.18
4345 4451 6.530019 AGGTTCATATTTCATTCCCACAAC 57.470 37.500 0.00 0.00 0.00 3.32
4439 4550 4.799255 GCCATTTTGAAAAGAACACGGGAT 60.799 41.667 0.00 0.00 0.00 3.85
4480 4604 1.510480 GCCTCCTACAATGCATCGCC 61.510 60.000 0.00 0.00 0.00 5.54
4552 4755 9.990360 TTTTGGGAGGTTCTGAATTATTTTTAC 57.010 29.630 0.00 0.00 0.00 2.01
4570 4773 5.104374 GCATGTGTGTTGATATTTTGGGAG 58.896 41.667 0.00 0.00 0.00 4.30
4859 5160 4.479158 TGGGCTTTATCTTGTTCCTTTGT 58.521 39.130 0.00 0.00 0.00 2.83
4882 5183 7.441017 TGGCAAGCTAACAATATCAAAGTTTT 58.559 30.769 0.00 0.00 0.00 2.43
4899 5200 1.708341 ACTTGTCCAATTGGCAAGCT 58.292 45.000 35.91 27.19 45.06 3.74
4900 5201 2.531522 AACTTGTCCAATTGGCAAGC 57.468 45.000 35.91 22.03 45.06 4.01
4901 5202 4.448732 GCTTTAACTTGTCCAATTGGCAAG 59.551 41.667 35.15 35.15 45.83 4.01
4903 5204 3.244044 GGCTTTAACTTGTCCAATTGGCA 60.244 43.478 20.33 17.27 34.44 4.92
4904 5205 3.244044 TGGCTTTAACTTGTCCAATTGGC 60.244 43.478 20.33 14.88 34.44 4.52
4905 5206 4.599047 TGGCTTTAACTTGTCCAATTGG 57.401 40.909 19.08 19.08 0.00 3.16
4906 5207 6.917217 TTTTGGCTTTAACTTGTCCAATTG 57.083 33.333 0.00 0.00 36.77 2.32
4907 5208 7.109501 AGTTTTTGGCTTTAACTTGTCCAATT 58.890 30.769 0.00 0.00 36.77 2.32
4908 5209 6.649155 AGTTTTTGGCTTTAACTTGTCCAAT 58.351 32.000 0.00 0.00 36.77 3.16
4909 5210 6.043854 AGTTTTTGGCTTTAACTTGTCCAA 57.956 33.333 0.00 0.00 35.25 3.53
4910 5211 5.669164 AGTTTTTGGCTTTAACTTGTCCA 57.331 34.783 0.00 0.00 0.00 4.02
4911 5212 6.592220 TCAAAGTTTTTGGCTTTAACTTGTCC 59.408 34.615 10.56 0.00 40.24 4.02
4912 5213 7.544217 TCTCAAAGTTTTTGGCTTTAACTTGTC 59.456 33.333 10.56 0.00 40.24 3.18
4913 5214 7.382898 TCTCAAAGTTTTTGGCTTTAACTTGT 58.617 30.769 10.56 2.32 40.24 3.16
4914 5215 7.826260 TCTCAAAGTTTTTGGCTTTAACTTG 57.174 32.000 10.56 6.92 40.24 3.16
4915 5216 9.098355 GAATCTCAAAGTTTTTGGCTTTAACTT 57.902 29.630 2.09 0.00 42.24 2.66
4916 5217 8.478066 AGAATCTCAAAGTTTTTGGCTTTAACT 58.522 29.630 2.09 0.00 34.76 2.24
4917 5218 8.648557 AGAATCTCAAAGTTTTTGGCTTTAAC 57.351 30.769 2.09 0.00 34.76 2.01
4919 5220 9.965824 CTAAGAATCTCAAAGTTTTTGGCTTTA 57.034 29.630 2.09 0.00 34.76 1.85
4920 5221 7.439356 GCTAAGAATCTCAAAGTTTTTGGCTTT 59.561 33.333 2.09 0.00 36.70 3.51
4921 5222 6.925718 GCTAAGAATCTCAAAGTTTTTGGCTT 59.074 34.615 2.09 0.00 0.00 4.35
4922 5223 6.266330 AGCTAAGAATCTCAAAGTTTTTGGCT 59.734 34.615 2.09 0.54 0.00 4.75
4923 5224 6.450545 AGCTAAGAATCTCAAAGTTTTTGGC 58.549 36.000 2.09 0.00 0.00 4.52
4924 5225 7.095899 GCAAGCTAAGAATCTCAAAGTTTTTGG 60.096 37.037 0.00 0.00 0.00 3.28
4925 5226 7.095899 GGCAAGCTAAGAATCTCAAAGTTTTTG 60.096 37.037 0.00 0.00 0.00 2.44
4926 5227 6.925718 GGCAAGCTAAGAATCTCAAAGTTTTT 59.074 34.615 0.00 0.00 0.00 1.94
4927 5228 6.040842 TGGCAAGCTAAGAATCTCAAAGTTTT 59.959 34.615 0.00 0.00 0.00 2.43
4928 5229 5.536161 TGGCAAGCTAAGAATCTCAAAGTTT 59.464 36.000 0.00 0.00 0.00 2.66
4929 5230 5.072741 TGGCAAGCTAAGAATCTCAAAGTT 58.927 37.500 0.00 0.00 0.00 2.66
4930 5231 4.655963 TGGCAAGCTAAGAATCTCAAAGT 58.344 39.130 0.00 0.00 0.00 2.66
4931 5232 5.633830 TTGGCAAGCTAAGAATCTCAAAG 57.366 39.130 0.00 0.00 0.00 2.77
4932 5233 6.209192 TCAATTGGCAAGCTAAGAATCTCAAA 59.791 34.615 5.96 0.00 0.00 2.69
4933 5234 5.711506 TCAATTGGCAAGCTAAGAATCTCAA 59.288 36.000 5.96 0.00 0.00 3.02
4934 5235 5.255687 TCAATTGGCAAGCTAAGAATCTCA 58.744 37.500 5.96 0.00 0.00 3.27
4935 5236 5.824904 TCAATTGGCAAGCTAAGAATCTC 57.175 39.130 5.96 0.00 0.00 2.75
4936 5237 5.477984 TGTTCAATTGGCAAGCTAAGAATCT 59.522 36.000 5.96 0.00 0.00 2.40
4937 5238 5.713025 TGTTCAATTGGCAAGCTAAGAATC 58.287 37.500 5.96 2.20 0.00 2.52
4978 5279 7.497579 TCTTAATTGGCAAGCTAACAATATCGA 59.502 33.333 5.96 0.00 34.00 3.59
4979 5280 7.587757 GTCTTAATTGGCAAGCTAACAATATCG 59.412 37.037 5.96 3.79 34.00 2.92
4984 5289 7.165485 TCTAGTCTTAATTGGCAAGCTAACAA 58.835 34.615 5.96 0.00 0.00 2.83
4987 5292 6.316390 GCTTCTAGTCTTAATTGGCAAGCTAA 59.684 38.462 5.96 5.32 32.69 3.09
4988 5293 5.817816 GCTTCTAGTCTTAATTGGCAAGCTA 59.182 40.000 5.96 0.00 32.69 3.32
4996 5301 4.446051 GCTAGCCGCTTCTAGTCTTAATTG 59.554 45.833 2.29 0.00 38.58 2.32
5004 5309 2.959707 ACTAATGCTAGCCGCTTCTAGT 59.040 45.455 13.29 6.92 38.58 2.57
5007 5312 2.939103 CAAACTAATGCTAGCCGCTTCT 59.061 45.455 13.29 0.00 40.11 2.85
5013 5318 5.123227 TCATACCACAAACTAATGCTAGCC 58.877 41.667 13.29 0.00 0.00 3.93
5078 5387 2.224549 CGACAACAAAATTGTAGGGCGA 59.775 45.455 16.55 0.00 44.75 5.54
5089 5398 4.167554 AGTTTTGCTCACGACAACAAAA 57.832 36.364 0.00 0.00 39.09 2.44
5093 5402 5.398416 GGATTAAAGTTTTGCTCACGACAAC 59.602 40.000 0.00 0.00 0.00 3.32
5112 5424 4.017958 TGGTAGCCATCCAAACAAGGATTA 60.018 41.667 0.00 0.00 46.12 1.75
5113 5425 3.245586 TGGTAGCCATCCAAACAAGGATT 60.246 43.478 0.00 0.00 46.12 3.01
5116 5431 2.214376 TGGTAGCCATCCAAACAAGG 57.786 50.000 0.00 0.00 31.50 3.61
5122 5437 5.396213 GCCATAAAAATTGGTAGCCATCCAA 60.396 40.000 7.19 7.19 46.82 3.53
5124 5439 4.100808 TGCCATAAAAATTGGTAGCCATCC 59.899 41.667 0.00 0.00 36.57 3.51
5130 5445 4.101430 AGGGCATGCCATAAAAATTGGTAG 59.899 41.667 36.56 0.00 36.57 3.18
5132 5447 2.845586 AGGGCATGCCATAAAAATTGGT 59.154 40.909 36.56 4.31 36.57 3.67
5139 5454 0.555280 TAGCCAGGGCATGCCATAAA 59.445 50.000 36.56 13.94 44.88 1.40
5142 5457 0.779358 TAATAGCCAGGGCATGCCAT 59.221 50.000 36.56 29.47 44.88 4.40
5277 5596 2.480642 TTTTTGGGGCTTTAGGGTGT 57.519 45.000 0.00 0.00 0.00 4.16
5298 5617 1.777030 TACGTGCCGTTGTGCCAAAG 61.777 55.000 0.00 0.00 41.54 2.77
5301 5620 2.203029 TTACGTGCCGTTGTGCCA 60.203 55.556 0.00 0.00 41.54 4.92
5303 5622 2.248835 AGGTTACGTGCCGTTGTGC 61.249 57.895 0.00 0.00 41.54 4.57
5304 5623 1.567537 CAGGTTACGTGCCGTTGTG 59.432 57.895 0.00 0.00 41.54 3.33
5305 5624 1.595929 CCAGGTTACGTGCCGTTGT 60.596 57.895 0.00 0.00 41.54 3.32
5307 5633 2.667199 GCCAGGTTACGTGCCGTT 60.667 61.111 0.00 0.00 41.54 4.44
5562 9180 2.073816 CACGGTTTGATGGGTAGTGAC 58.926 52.381 0.00 0.00 0.00 3.67
5569 9187 1.573829 CGTCCACACGGTTTGATGGG 61.574 60.000 0.00 0.00 42.73 4.00
5605 9224 0.710567 GAGCGTGACGACATCTTGTG 59.289 55.000 10.10 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.