Multiple sequence alignment - TraesCS4D01G351300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G351300 chr4D 100.000 3650 0 0 1 3650 503174798 503178447 0.000000e+00 6741.0
1 TraesCS4D01G351300 chr4D 98.058 206 3 1 3354 3559 500001346 500001142 1.250000e-94 357.0
2 TraesCS4D01G351300 chr4D 96.729 214 5 2 3346 3559 365992242 365992031 4.480000e-94 355.0
3 TraesCS4D01G351300 chr4D 83.430 344 37 13 3027 3354 497419282 497419621 5.920000e-78 302.0
4 TraesCS4D01G351300 chr4D 83.478 345 33 15 3027 3354 497415862 497416199 2.130000e-77 300.0
5 TraesCS4D01G351300 chr4D 83.140 344 36 13 3027 3354 497426385 497426722 9.910000e-76 294.0
6 TraesCS4D01G351300 chr4D 81.924 343 38 11 3029 3354 497412625 497412960 6.010000e-68 268.0
7 TraesCS4D01G351300 chr4D 81.429 350 39 13 3027 3354 73245350 73245005 2.800000e-66 263.0
8 TraesCS4D01G351300 chr4D 86.161 224 26 4 3129 3349 497439689 497439910 1.690000e-58 237.0
9 TraesCS4D01G351300 chr5A 91.539 2423 118 35 738 3109 687654759 687657145 0.000000e+00 3258.0
10 TraesCS4D01G351300 chr5A 90.924 628 39 10 10 634 687653935 687654547 0.000000e+00 828.0
11 TraesCS4D01G351300 chr5A 94.898 98 5 0 3553 3650 378284432 378284529 1.760000e-33 154.0
12 TraesCS4D01G351300 chr4B 91.176 2040 97 36 722 2721 647694247 647692251 0.000000e+00 2693.0
13 TraesCS4D01G351300 chr4B 90.930 1764 80 28 957 2707 648269149 648270845 0.000000e+00 2298.0
14 TraesCS4D01G351300 chr4B 90.873 1764 81 28 957 2707 648243119 648244815 0.000000e+00 2292.0
15 TraesCS4D01G351300 chr4B 90.816 1764 82 26 957 2707 648193851 648195547 0.000000e+00 2287.0
16 TraesCS4D01G351300 chr4B 92.649 1510 66 11 1211 2707 648219464 648220941 0.000000e+00 2132.0
17 TraesCS4D01G351300 chr4B 93.734 399 22 2 12 408 647698373 647697976 2.430000e-166 595.0
18 TraesCS4D01G351300 chr4B 92.651 381 19 6 401 781 647694649 647694278 1.150000e-149 540.0
19 TraesCS4D01G351300 chr4B 88.158 304 26 7 2803 3099 648195886 648196186 1.610000e-93 353.0
20 TraesCS4D01G351300 chr4B 87.829 304 27 7 2803 3099 648221280 648221580 7.500000e-92 348.0
21 TraesCS4D01G351300 chr4B 87.500 304 28 7 2803 3099 648271184 648271484 3.490000e-90 342.0
22 TraesCS4D01G351300 chr4B 87.667 300 27 7 2803 3095 648245154 648245450 1.260000e-89 340.0
23 TraesCS4D01G351300 chr4B 95.597 159 2 2 1 155 648193144 648193301 2.180000e-62 250.0
24 TraesCS4D01G351300 chr4B 95.597 159 2 2 1 155 648218570 648218727 2.180000e-62 250.0
25 TraesCS4D01G351300 chr4B 95.597 159 2 2 1 155 648268443 648268600 2.180000e-62 250.0
26 TraesCS4D01G351300 chr4B 96.396 111 4 0 316 426 648218760 648218870 2.240000e-42 183.0
27 TraesCS4D01G351300 chr4B 95.495 111 5 0 316 426 648193334 648193444 1.040000e-40 178.0
28 TraesCS4D01G351300 chr4B 95.495 111 5 0 316 426 648268633 648268743 1.040000e-40 178.0
29 TraesCS4D01G351300 chr4B 95.402 87 4 0 340 426 648242627 648242713 4.910000e-29 139.0
30 TraesCS4D01G351300 chr4B 89.524 105 3 3 957 1053 648219275 648219379 3.830000e-25 126.0
31 TraesCS4D01G351300 chr4B 91.463 82 3 3 151 230 666798529 666798450 3.850000e-20 110.0
32 TraesCS4D01G351300 chr4B 80.982 163 8 6 768 929 648193712 648193852 1.390000e-19 108.0
33 TraesCS4D01G351300 chr4B 80.982 163 8 6 768 929 648242980 648243120 1.390000e-19 108.0
34 TraesCS4D01G351300 chr4B 80.982 163 8 6 768 929 648269010 648269150 1.390000e-19 108.0
35 TraesCS4D01G351300 chr4B 80.368 163 9 6 768 929 648219136 648219276 6.450000e-18 102.0
36 TraesCS4D01G351300 chr4B 98.214 56 1 0 422 477 648193556 648193611 8.340000e-17 99.0
37 TraesCS4D01G351300 chr4B 98.214 56 1 0 422 477 648218982 648219037 8.340000e-17 99.0
38 TraesCS4D01G351300 chr4B 98.214 56 1 0 422 477 648242825 648242880 8.340000e-17 99.0
39 TraesCS4D01G351300 chr4B 98.214 56 1 0 422 477 648268855 648268910 8.340000e-17 99.0
40 TraesCS4D01G351300 chr4B 84.000 75 3 6 1076 1150 648219375 648219440 3.040000e-06 63.9
41 TraesCS4D01G351300 chr6B 84.988 1259 145 27 1139 2374 14126299 14127536 0.000000e+00 1238.0
42 TraesCS4D01G351300 chr6B 86.382 1006 128 4 1371 2376 13975261 13974265 0.000000e+00 1090.0
43 TraesCS4D01G351300 chr6B 83.626 342 34 15 3025 3354 687259314 687258983 5.920000e-78 302.0
44 TraesCS4D01G351300 chr6A 84.597 1253 162 21 1139 2374 7697549 7698787 0.000000e+00 1216.0
45 TraesCS4D01G351300 chr6A 87.202 1008 119 8 1371 2376 7398206 7397207 0.000000e+00 1138.0
46 TraesCS4D01G351300 chr6D 86.713 1016 127 3 1360 2374 7552302 7553310 0.000000e+00 1122.0
47 TraesCS4D01G351300 chr6D 83.664 655 86 16 1139 1774 7508579 7507927 6.750000e-167 597.0
48 TraesCS4D01G351300 chr6D 88.816 152 15 2 1139 1289 7512488 7512338 6.220000e-43 185.0
49 TraesCS4D01G351300 chr6D 90.071 141 14 0 1139 1279 7552039 7552179 2.240000e-42 183.0
50 TraesCS4D01G351300 chr3D 98.537 205 2 1 3355 3559 143261388 143261591 9.640000e-96 361.0
51 TraesCS4D01G351300 chr3D 97.596 208 4 1 3352 3559 87447009 87447215 4.480000e-94 355.0
52 TraesCS4D01G351300 chr3D 97.596 208 4 1 3352 3559 219346836 219347042 4.480000e-94 355.0
53 TraesCS4D01G351300 chr3D 83.333 114 15 3 126 238 400694487 400694377 6.450000e-18 102.0
54 TraesCS4D01G351300 chr3D 91.304 46 4 0 2761 2806 609230660 609230615 3.040000e-06 63.9
55 TraesCS4D01G351300 chr5D 98.058 206 3 1 3354 3559 292310803 292310599 1.250000e-94 357.0
56 TraesCS4D01G351300 chr5D 83.962 106 13 4 133 237 351788115 351788217 8.340000e-17 99.0
57 TraesCS4D01G351300 chr2D 98.058 206 3 1 3354 3559 441102649 441102853 1.250000e-94 357.0
58 TraesCS4D01G351300 chr2D 93.886 229 11 3 3333 3559 426161155 426161382 3.490000e-90 342.0
59 TraesCS4D01G351300 chr1D 97.115 208 5 1 3352 3559 282714035 282713829 2.090000e-92 350.0
60 TraesCS4D01G351300 chr1D 80.672 119 21 2 119 237 317590789 317590905 1.400000e-14 91.6
61 TraesCS4D01G351300 chr4A 84.685 333 38 6 3024 3349 697931071 697931397 1.640000e-83 320.0
62 TraesCS4D01G351300 chr4A 79.567 323 39 16 3056 3354 173402353 173402672 4.780000e-49 206.0
63 TraesCS4D01G351300 chr7A 79.710 345 36 15 3025 3348 37846844 37846513 6.140000e-53 219.0
64 TraesCS4D01G351300 chr7A 83.810 105 14 2 126 230 652541829 652541728 3.000000e-16 97.1
65 TraesCS4D01G351300 chr3A 79.456 331 41 8 3024 3330 220639686 220640013 3.690000e-50 209.0
66 TraesCS4D01G351300 chr2B 90.816 98 9 0 3553 3650 693310606 693310703 8.220000e-27 132.0
67 TraesCS4D01G351300 chr3B 91.398 93 8 0 3558 3650 673135748 673135840 1.060000e-25 128.0
68 TraesCS4D01G351300 chr5B 83.607 122 17 3 119 239 485912186 485912067 1.070000e-20 111.0
69 TraesCS4D01G351300 chr1B 80.672 119 21 2 119 237 429700132 429700248 1.400000e-14 91.6
70 TraesCS4D01G351300 chr1B 91.071 56 4 1 2744 2798 25437686 25437741 1.410000e-09 75.0
71 TraesCS4D01G351300 chr1B 100.000 28 0 0 13 40 217723739 217723712 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G351300 chr4D 503174798 503178447 3649 False 6741.000000 6741 100.000000 1 3650 1 chr4D.!!$F3 3649
1 TraesCS4D01G351300 chr4D 497412625 497419621 6996 False 290.000000 302 82.944000 3027 3354 3 chr4D.!!$F4 327
2 TraesCS4D01G351300 chr5A 687653935 687657145 3210 False 2043.000000 3258 91.231500 10 3109 2 chr5A.!!$F2 3099
3 TraesCS4D01G351300 chr4B 647692251 647698373 6122 True 1276.000000 2693 92.520333 12 2721 3 chr4B.!!$R2 2709
4 TraesCS4D01G351300 chr4B 648242627 648245450 2823 False 595.600000 2292 90.627600 340 3095 5 chr4B.!!$F3 2755
5 TraesCS4D01G351300 chr4B 648193144 648196186 3042 False 545.833333 2287 91.543667 1 3099 6 chr4B.!!$F1 3098
6 TraesCS4D01G351300 chr4B 648268443 648271484 3041 False 545.833333 2298 91.453000 1 3099 6 chr4B.!!$F4 3098
7 TraesCS4D01G351300 chr4B 648218570 648221580 3010 False 412.987500 2132 90.572125 1 3099 8 chr4B.!!$F2 3098
8 TraesCS4D01G351300 chr6B 14126299 14127536 1237 False 1238.000000 1238 84.988000 1139 2374 1 chr6B.!!$F1 1235
9 TraesCS4D01G351300 chr6B 13974265 13975261 996 True 1090.000000 1090 86.382000 1371 2376 1 chr6B.!!$R1 1005
10 TraesCS4D01G351300 chr6A 7697549 7698787 1238 False 1216.000000 1216 84.597000 1139 2374 1 chr6A.!!$F1 1235
11 TraesCS4D01G351300 chr6A 7397207 7398206 999 True 1138.000000 1138 87.202000 1371 2376 1 chr6A.!!$R1 1005
12 TraesCS4D01G351300 chr6D 7552039 7553310 1271 False 652.500000 1122 88.392000 1139 2374 2 chr6D.!!$F1 1235
13 TraesCS4D01G351300 chr6D 7507927 7512488 4561 True 391.000000 597 86.240000 1139 1774 2 chr6D.!!$R1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 4203 4.261322 CCATGTCCTCAACTCAACTGTTTG 60.261 45.833 0.0 0.0 0.00 2.93 F
1120 4697 0.615331 GCTGTGGAATCAGAGGTGGA 59.385 55.000 0.0 0.0 37.61 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 9283 1.587613 GAGCGTCATCTCGGAGCAC 60.588 63.158 0.0 0.0 0.00 4.4 R
2879 10710 0.739561 GCCTCCGTAGTCGACAGAAT 59.260 55.000 19.5 0.0 39.71 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 233 9.893305 ACCTAGAACTTCAAATATTTTGAAACG 57.107 29.630 14.33 8.08 37.89 3.60
256 262 8.408601 TGGAGTACTTTGTATACTATTCCGTTC 58.591 37.037 4.17 0.00 32.93 3.95
525 3869 7.948278 ATGCTACGGAACTATACAAGATTTC 57.052 36.000 0.00 0.00 0.00 2.17
530 3874 7.125792 ACGGAACTATACAAGATTTCTGGAT 57.874 36.000 0.00 0.00 0.00 3.41
531 3875 7.565680 ACGGAACTATACAAGATTTCTGGATT 58.434 34.615 0.00 0.00 0.00 3.01
576 3922 7.835634 AGAGAAGCAATTTTGTACTAGCTAC 57.164 36.000 0.00 0.00 0.00 3.58
627 3973 8.386606 TCAACAGTCAAAACAAAAATATTGTGC 58.613 29.630 0.00 0.00 32.22 4.57
750 4203 4.261322 CCATGTCCTCAACTCAACTGTTTG 60.261 45.833 0.00 0.00 0.00 2.93
766 4219 5.831103 ACTGTTTGAAATCCCCATGTCTAT 58.169 37.500 0.00 0.00 0.00 1.98
783 4236 9.667107 CCATGTCTATAACAGAACTTTAAAGGA 57.333 33.333 19.14 0.34 42.37 3.36
1028 4597 3.476552 TCGGAAGATTCACAAGCAAGTT 58.523 40.909 0.00 0.00 33.31 2.66
1029 4598 3.250762 TCGGAAGATTCACAAGCAAGTTG 59.749 43.478 0.00 0.00 37.41 3.16
1105 4682 1.380785 CATGGCCATGGGAAGCTGT 60.381 57.895 34.31 0.00 35.24 4.40
1110 4687 0.685458 GCCATGGGAAGCTGTGGAAT 60.685 55.000 15.13 0.00 33.53 3.01
1114 4691 1.361204 TGGGAAGCTGTGGAATCAGA 58.639 50.000 0.00 0.00 37.61 3.27
1120 4697 0.615331 GCTGTGGAATCAGAGGTGGA 59.385 55.000 0.00 0.00 37.61 4.02
1240 4817 2.111043 ACCAACAGCGACCACCTG 59.889 61.111 0.00 0.00 36.41 4.00
1411 8945 2.361357 ACCTGACGGAGGAGACGG 60.361 66.667 9.60 0.00 46.33 4.79
1953 9487 3.790437 CTGGGCATGCGGGTCTCT 61.790 66.667 12.44 0.00 0.00 3.10
2055 9592 3.418913 CGTGGCGCCATTGTCGAA 61.419 61.111 35.23 2.76 0.00 3.71
2349 9904 1.661821 GGGAATCACGATCGAGGCG 60.662 63.158 24.34 7.18 0.00 5.52
2378 9955 1.715862 CGCTGTCCACGCTAGCTAGA 61.716 60.000 25.15 3.57 35.36 2.43
2379 9956 0.671251 GCTGTCCACGCTAGCTAGAT 59.329 55.000 25.15 8.54 34.70 1.98
2380 9957 1.601663 GCTGTCCACGCTAGCTAGATG 60.602 57.143 25.15 19.41 34.70 2.90
2381 9958 1.000827 CTGTCCACGCTAGCTAGATGG 60.001 57.143 27.23 27.23 34.29 3.51
2382 9959 1.033574 GTCCACGCTAGCTAGATGGT 58.966 55.000 29.64 19.63 34.50 3.55
2383 9960 1.001158 GTCCACGCTAGCTAGATGGTC 60.001 57.143 29.64 24.33 34.50 4.02
2384 9961 0.315568 CCACGCTAGCTAGATGGTCC 59.684 60.000 25.15 4.36 0.00 4.46
2385 9962 1.032794 CACGCTAGCTAGATGGTCCA 58.967 55.000 25.15 0.00 0.00 4.02
2386 9963 1.615883 CACGCTAGCTAGATGGTCCAT 59.384 52.381 25.15 3.26 0.00 3.41
2387 9964 1.889829 ACGCTAGCTAGATGGTCCATC 59.110 52.381 25.15 22.47 40.80 3.51
2388 9965 1.203523 CGCTAGCTAGATGGTCCATCC 59.796 57.143 25.53 12.45 41.36 3.51
2396 9973 3.319274 TGGTCCATCCATCCACGG 58.681 61.111 0.00 0.00 41.93 4.94
2397 9974 2.203209 GGTCCATCCATCCACGGC 60.203 66.667 0.00 0.00 35.97 5.68
2398 9975 2.203209 GTCCATCCATCCACGGCC 60.203 66.667 0.00 0.00 0.00 6.13
2399 9976 3.860605 TCCATCCATCCACGGCCG 61.861 66.667 26.86 26.86 0.00 6.13
2491 10073 1.068748 GCACAAGTCATCAGCCAACTG 60.069 52.381 0.00 0.00 45.95 3.16
2515 10097 4.833380 AGTAGTAGTCAAAGAAGGCAGACA 59.167 41.667 0.00 0.00 33.56 3.41
2736 10321 4.506654 GCACCTGTATGTTATCAAGGTACG 59.493 45.833 0.00 0.00 0.00 3.67
2787 10617 6.828273 CAGATGATTAGGTTATTTGTGGTGGA 59.172 38.462 0.00 0.00 0.00 4.02
2807 10637 1.679977 CCAGCCCACCAGGATTGTG 60.680 63.158 0.00 0.00 38.24 3.33
2830 10660 8.044309 TGTGCTAGTTAGGTGCTCATATTTTTA 58.956 33.333 0.00 0.00 0.00 1.52
2860 10691 1.156736 CAGTCTTTCCGGCGATGTTT 58.843 50.000 9.30 0.00 0.00 2.83
2879 10710 4.224147 TGTTTATTCAATGGGAGGAGACGA 59.776 41.667 0.00 0.00 0.00 4.20
2904 10735 2.799371 GACTACGGAGGCGTCTGG 59.201 66.667 18.89 8.11 32.68 3.86
2914 10745 2.741092 GCGTCTGGGGTGACTTCA 59.259 61.111 0.00 0.00 35.00 3.02
2972 10803 1.678101 GGCTTGACTGCAACTCAAAGT 59.322 47.619 7.66 0.00 34.04 2.66
3030 10861 4.622701 GCAAGTAGCAAGAATCGGAAAT 57.377 40.909 0.00 0.00 44.79 2.17
3031 10862 4.592179 GCAAGTAGCAAGAATCGGAAATC 58.408 43.478 0.00 0.00 44.79 2.17
3032 10863 4.496507 GCAAGTAGCAAGAATCGGAAATCC 60.497 45.833 0.00 0.00 44.79 3.01
3172 11017 4.822685 ATGAAATATTTTGGCCTGTGCA 57.177 36.364 3.32 0.00 40.13 4.57
3173 11018 4.613925 TGAAATATTTTGGCCTGTGCAA 57.386 36.364 3.32 0.00 40.13 4.08
3208 11053 4.998051 AGATGTTACCCCAAAATGTCACT 58.002 39.130 0.00 0.00 0.00 3.41
3212 11057 6.134535 TGTTACCCCAAAATGTCACTCTAT 57.865 37.500 0.00 0.00 0.00 1.98
3213 11058 6.548321 TGTTACCCCAAAATGTCACTCTATT 58.452 36.000 0.00 0.00 0.00 1.73
3261 14532 3.059438 GCTCCGTTTCGCATGAAAATTTC 59.941 43.478 0.00 0.00 45.22 2.17
3264 14535 3.738282 CCGTTTCGCATGAAAATTTCCAA 59.262 39.130 3.00 0.00 45.22 3.53
3270 14541 4.220382 TCGCATGAAAATTTCCAAGGATGT 59.780 37.500 3.00 0.00 0.00 3.06
3277 14548 3.575965 ATTTCCAAGGATGTTTGCGAC 57.424 42.857 0.00 0.00 0.00 5.19
3284 14555 2.066262 AGGATGTTTGCGACACTAACG 58.934 47.619 0.00 0.00 42.04 3.18
3285 14556 1.796459 GGATGTTTGCGACACTAACGT 59.204 47.619 0.00 0.00 42.04 3.99
3295 14566 3.300066 GCGACACTAACGTGAACATCTAC 59.700 47.826 0.00 0.00 43.97 2.59
3354 14626 6.811253 TTTTGTTTACTATTCACGCAGGAT 57.189 33.333 0.00 0.00 0.00 3.24
3355 14627 5.794687 TTGTTTACTATTCACGCAGGATG 57.205 39.130 0.00 0.00 40.87 3.51
3356 14628 5.079689 TGTTTACTATTCACGCAGGATGA 57.920 39.130 0.00 0.00 39.69 2.92
3357 14629 5.670485 TGTTTACTATTCACGCAGGATGAT 58.330 37.500 0.00 0.00 39.69 2.45
3358 14630 6.811954 TGTTTACTATTCACGCAGGATGATA 58.188 36.000 0.00 0.00 39.69 2.15
3359 14631 6.700081 TGTTTACTATTCACGCAGGATGATAC 59.300 38.462 0.00 0.00 39.69 2.24
3360 14632 3.902150 ACTATTCACGCAGGATGATACG 58.098 45.455 0.00 0.00 39.69 3.06
3361 14633 2.890808 ATTCACGCAGGATGATACGT 57.109 45.000 0.00 0.00 39.69 3.57
3362 14634 2.203800 TTCACGCAGGATGATACGTC 57.796 50.000 0.00 0.00 39.69 4.34
3363 14635 0.384309 TCACGCAGGATGATACGTCC 59.616 55.000 0.00 0.00 39.69 4.79
3364 14636 0.102300 CACGCAGGATGATACGTCCA 59.898 55.000 11.75 0.00 39.69 4.02
3365 14637 1.040646 ACGCAGGATGATACGTCCAT 58.959 50.000 11.75 0.00 39.69 3.41
3366 14638 1.412710 ACGCAGGATGATACGTCCATT 59.587 47.619 11.75 0.00 39.69 3.16
3367 14639 2.158957 ACGCAGGATGATACGTCCATTT 60.159 45.455 11.75 0.00 39.69 2.32
3368 14640 2.872245 CGCAGGATGATACGTCCATTTT 59.128 45.455 11.75 0.00 39.69 1.82
3369 14641 3.303329 CGCAGGATGATACGTCCATTTTG 60.303 47.826 11.75 1.72 39.69 2.44
3370 14642 3.548818 GCAGGATGATACGTCCATTTTGC 60.549 47.826 16.64 16.64 39.69 3.68
3371 14643 3.627123 CAGGATGATACGTCCATTTTGCA 59.373 43.478 11.75 0.00 39.69 4.08
3372 14644 4.276678 CAGGATGATACGTCCATTTTGCAT 59.723 41.667 11.75 0.00 39.69 3.96
3373 14645 4.516698 AGGATGATACGTCCATTTTGCATC 59.483 41.667 11.75 0.00 38.25 3.91
3374 14646 4.275689 GGATGATACGTCCATTTTGCATCA 59.724 41.667 0.00 0.00 35.76 3.07
3375 14647 5.048504 GGATGATACGTCCATTTTGCATCAT 60.049 40.000 0.00 0.00 35.07 2.45
3376 14648 5.172460 TGATACGTCCATTTTGCATCATG 57.828 39.130 0.00 0.00 0.00 3.07
3377 14649 2.282701 ACGTCCATTTTGCATCATGC 57.717 45.000 1.35 1.35 45.29 4.06
3378 14650 1.820519 ACGTCCATTTTGCATCATGCT 59.179 42.857 11.84 0.00 45.31 3.79
3379 14651 2.231964 ACGTCCATTTTGCATCATGCTT 59.768 40.909 11.84 0.00 45.31 3.91
3380 14652 3.255725 CGTCCATTTTGCATCATGCTTT 58.744 40.909 11.84 0.00 45.31 3.51
3381 14653 3.680937 CGTCCATTTTGCATCATGCTTTT 59.319 39.130 11.84 0.00 45.31 2.27
3382 14654 4.863689 CGTCCATTTTGCATCATGCTTTTA 59.136 37.500 11.84 0.00 45.31 1.52
3383 14655 5.521010 CGTCCATTTTGCATCATGCTTTTAT 59.479 36.000 11.84 0.00 45.31 1.40
3384 14656 6.696583 CGTCCATTTTGCATCATGCTTTTATA 59.303 34.615 11.84 0.00 45.31 0.98
3385 14657 7.383029 CGTCCATTTTGCATCATGCTTTTATAT 59.617 33.333 11.84 0.00 45.31 0.86
3386 14658 8.706035 GTCCATTTTGCATCATGCTTTTATATC 58.294 33.333 11.84 0.00 45.31 1.63
3387 14659 7.595875 TCCATTTTGCATCATGCTTTTATATCG 59.404 33.333 11.84 0.00 45.31 2.92
3388 14660 7.595875 CCATTTTGCATCATGCTTTTATATCGA 59.404 33.333 11.84 0.00 45.31 3.59
3389 14661 9.135843 CATTTTGCATCATGCTTTTATATCGAT 57.864 29.630 11.84 2.16 45.31 3.59
3408 14680 7.886629 ATCGATATTTATTGCATTATGGGCT 57.113 32.000 0.00 0.00 0.00 5.19
3409 14681 7.087409 TCGATATTTATTGCATTATGGGCTG 57.913 36.000 0.00 0.00 0.00 4.85
3410 14682 6.658816 TCGATATTTATTGCATTATGGGCTGT 59.341 34.615 0.00 0.00 0.00 4.40
3411 14683 7.176515 TCGATATTTATTGCATTATGGGCTGTT 59.823 33.333 0.00 0.00 0.00 3.16
3412 14684 8.458052 CGATATTTATTGCATTATGGGCTGTTA 58.542 33.333 0.00 0.00 0.00 2.41
3416 14688 9.927668 ATTTATTGCATTATGGGCTGTTATTAC 57.072 29.630 0.00 0.00 0.00 1.89
3417 14689 6.975196 ATTGCATTATGGGCTGTTATTACA 57.025 33.333 0.00 0.00 0.00 2.41
3418 14690 5.766150 TGCATTATGGGCTGTTATTACAC 57.234 39.130 0.00 0.00 0.00 2.90
3419 14691 5.196695 TGCATTATGGGCTGTTATTACACA 58.803 37.500 0.00 0.00 0.00 3.72
3420 14692 5.832595 TGCATTATGGGCTGTTATTACACAT 59.167 36.000 0.00 0.00 0.00 3.21
3421 14693 6.323482 TGCATTATGGGCTGTTATTACACATT 59.677 34.615 0.00 0.00 0.00 2.71
3422 14694 7.503902 TGCATTATGGGCTGTTATTACACATTA 59.496 33.333 0.00 0.00 0.00 1.90
3423 14695 8.522830 GCATTATGGGCTGTTATTACACATTAT 58.477 33.333 0.00 0.00 0.00 1.28
3424 14696 9.844790 CATTATGGGCTGTTATTACACATTATG 57.155 33.333 0.00 0.00 28.27 1.90
3425 14697 8.988546 TTATGGGCTGTTATTACACATTATGT 57.011 30.769 0.00 0.00 46.06 2.29
3426 14698 6.935741 TGGGCTGTTATTACACATTATGTC 57.064 37.500 0.00 0.00 42.09 3.06
3427 14699 6.418946 TGGGCTGTTATTACACATTATGTCA 58.581 36.000 0.00 0.00 42.09 3.58
3428 14700 6.317642 TGGGCTGTTATTACACATTATGTCAC 59.682 38.462 0.00 0.00 42.09 3.67
3429 14701 6.317642 GGGCTGTTATTACACATTATGTCACA 59.682 38.462 0.00 0.00 42.09 3.58
3430 14702 7.148154 GGGCTGTTATTACACATTATGTCACAA 60.148 37.037 0.00 0.00 42.09 3.33
3431 14703 8.405531 GGCTGTTATTACACATTATGTCACAAT 58.594 33.333 0.00 0.00 42.09 2.71
3441 14713 9.135189 ACACATTATGTCACAATATTTATGCCT 57.865 29.630 0.00 0.00 36.54 4.75
3449 14721 9.494271 TGTCACAATATTTATGCCTATTCTCTC 57.506 33.333 0.00 0.00 0.00 3.20
3450 14722 9.717942 GTCACAATATTTATGCCTATTCTCTCT 57.282 33.333 0.00 0.00 0.00 3.10
3462 14734 8.964476 TGCCTATTCTCTCTTATTTTACAAGG 57.036 34.615 0.00 0.00 0.00 3.61
3463 14735 8.548877 TGCCTATTCTCTCTTATTTTACAAGGT 58.451 33.333 0.00 0.00 0.00 3.50
3464 14736 9.397280 GCCTATTCTCTCTTATTTTACAAGGTT 57.603 33.333 0.00 0.00 0.00 3.50
3470 14742 9.199982 TCTCTCTTATTTTACAAGGTTTACACG 57.800 33.333 0.00 0.00 0.00 4.49
3471 14743 9.199982 CTCTCTTATTTTACAAGGTTTACACGA 57.800 33.333 0.00 0.00 0.00 4.35
3472 14744 9.545105 TCTCTTATTTTACAAGGTTTACACGAA 57.455 29.630 0.00 0.00 0.00 3.85
3473 14745 9.807386 CTCTTATTTTACAAGGTTTACACGAAG 57.193 33.333 0.00 0.00 0.00 3.79
3474 14746 9.545105 TCTTATTTTACAAGGTTTACACGAAGA 57.455 29.630 0.00 0.00 0.00 2.87
3475 14747 9.807386 CTTATTTTACAAGGTTTACACGAAGAG 57.193 33.333 0.00 0.00 0.00 2.85
3476 14748 6.607735 TTTTACAAGGTTTACACGAAGAGG 57.392 37.500 0.00 0.00 0.00 3.69
3477 14749 3.121738 ACAAGGTTTACACGAAGAGGG 57.878 47.619 0.00 0.00 0.00 4.30
3478 14750 2.701951 ACAAGGTTTACACGAAGAGGGA 59.298 45.455 0.00 0.00 0.00 4.20
3479 14751 3.244112 ACAAGGTTTACACGAAGAGGGAG 60.244 47.826 0.00 0.00 0.00 4.30
3480 14752 2.885616 AGGTTTACACGAAGAGGGAGA 58.114 47.619 0.00 0.00 0.00 3.71
3481 14753 3.236896 AGGTTTACACGAAGAGGGAGAA 58.763 45.455 0.00 0.00 0.00 2.87
3482 14754 3.838903 AGGTTTACACGAAGAGGGAGAAT 59.161 43.478 0.00 0.00 0.00 2.40
3483 14755 3.933332 GGTTTACACGAAGAGGGAGAATG 59.067 47.826 0.00 0.00 0.00 2.67
3484 14756 2.961526 TACACGAAGAGGGAGAATGC 57.038 50.000 0.00 0.00 0.00 3.56
3492 14764 4.496336 GGGAGAATGCCGGCAGCT 62.496 66.667 35.36 31.54 44.23 4.24
3493 14765 3.207669 GGAGAATGCCGGCAGCTG 61.208 66.667 35.36 10.11 44.23 4.24
3494 14766 3.207669 GAGAATGCCGGCAGCTGG 61.208 66.667 35.36 17.00 44.23 4.85
3495 14767 3.687321 GAGAATGCCGGCAGCTGGA 62.687 63.158 35.36 10.32 44.23 3.86
3496 14768 2.751436 GAATGCCGGCAGCTGGAA 60.751 61.111 35.36 15.43 44.23 3.53
3497 14769 2.043652 AATGCCGGCAGCTGGAAT 60.044 55.556 35.36 17.41 44.23 3.01
3498 14770 1.669999 GAATGCCGGCAGCTGGAATT 61.670 55.000 35.36 25.18 40.67 2.17
3499 14771 1.669999 AATGCCGGCAGCTGGAATTC 61.670 55.000 35.36 6.55 32.94 2.17
3500 14772 2.439156 GCCGGCAGCTGGAATTCT 60.439 61.111 25.86 0.00 38.99 2.40
3501 14773 2.768492 GCCGGCAGCTGGAATTCTG 61.768 63.158 25.86 2.83 38.99 3.02
3502 14774 2.117156 CCGGCAGCTGGAATTCTGG 61.117 63.158 16.28 8.81 29.82 3.86
3503 14775 2.117156 CGGCAGCTGGAATTCTGGG 61.117 63.158 17.12 0.00 0.00 4.45
3504 14776 2.421399 GGCAGCTGGAATTCTGGGC 61.421 63.158 17.12 7.46 0.00 5.36
3505 14777 1.379576 GCAGCTGGAATTCTGGGCT 60.380 57.895 17.12 9.52 0.00 5.19
3506 14778 2.490165 CAGCTGGAATTCTGGGCTG 58.510 57.895 22.51 22.51 43.03 4.85
3507 14779 1.035932 CAGCTGGAATTCTGGGCTGG 61.036 60.000 25.31 14.88 44.32 4.85
3508 14780 1.210204 AGCTGGAATTCTGGGCTGGA 61.210 55.000 15.46 0.00 31.68 3.86
3509 14781 0.323725 GCTGGAATTCTGGGCTGGAA 60.324 55.000 5.23 0.00 0.00 3.53
3510 14782 1.892329 GCTGGAATTCTGGGCTGGAAA 60.892 52.381 5.23 0.00 0.00 3.13
3511 14783 2.528564 CTGGAATTCTGGGCTGGAAAA 58.471 47.619 5.23 0.00 0.00 2.29
3512 14784 2.494870 CTGGAATTCTGGGCTGGAAAAG 59.505 50.000 5.23 0.00 0.00 2.27
3513 14785 1.827344 GGAATTCTGGGCTGGAAAAGG 59.173 52.381 5.23 0.00 0.00 3.11
3514 14786 2.557452 GGAATTCTGGGCTGGAAAAGGA 60.557 50.000 5.23 0.00 0.00 3.36
3515 14787 2.521547 ATTCTGGGCTGGAAAAGGAG 57.478 50.000 0.00 0.00 0.00 3.69
3516 14788 0.251341 TTCTGGGCTGGAAAAGGAGC 60.251 55.000 0.00 0.00 34.23 4.70
3517 14789 1.075482 CTGGGCTGGAAAAGGAGCA 59.925 57.895 0.00 0.00 36.90 4.26
3518 14790 0.540365 CTGGGCTGGAAAAGGAGCAA 60.540 55.000 0.00 0.00 36.90 3.91
3519 14791 0.105760 TGGGCTGGAAAAGGAGCAAA 60.106 50.000 0.00 0.00 36.90 3.68
3520 14792 1.269958 GGGCTGGAAAAGGAGCAAAT 58.730 50.000 0.00 0.00 36.90 2.32
3521 14793 2.225242 TGGGCTGGAAAAGGAGCAAATA 60.225 45.455 0.00 0.00 36.90 1.40
3522 14794 3.033909 GGGCTGGAAAAGGAGCAAATAT 58.966 45.455 0.00 0.00 36.90 1.28
3523 14795 3.452264 GGGCTGGAAAAGGAGCAAATATT 59.548 43.478 0.00 0.00 36.90 1.28
3524 14796 4.649218 GGGCTGGAAAAGGAGCAAATATTA 59.351 41.667 0.00 0.00 36.90 0.98
3525 14797 5.221322 GGGCTGGAAAAGGAGCAAATATTAG 60.221 44.000 0.00 0.00 36.90 1.73
3526 14798 5.594317 GGCTGGAAAAGGAGCAAATATTAGA 59.406 40.000 0.00 0.00 36.90 2.10
3527 14799 6.096846 GGCTGGAAAAGGAGCAAATATTAGAA 59.903 38.462 0.00 0.00 36.90 2.10
3528 14800 7.199078 GCTGGAAAAGGAGCAAATATTAGAAG 58.801 38.462 0.00 0.00 35.15 2.85
3529 14801 7.067494 GCTGGAAAAGGAGCAAATATTAGAAGA 59.933 37.037 0.00 0.00 35.15 2.87
3530 14802 8.281212 TGGAAAAGGAGCAAATATTAGAAGAC 57.719 34.615 0.00 0.00 0.00 3.01
3531 14803 7.339466 TGGAAAAGGAGCAAATATTAGAAGACC 59.661 37.037 0.00 0.00 0.00 3.85
3532 14804 7.558081 GGAAAAGGAGCAAATATTAGAAGACCT 59.442 37.037 0.00 0.00 0.00 3.85
3533 14805 9.614792 GAAAAGGAGCAAATATTAGAAGACCTA 57.385 33.333 0.00 0.00 0.00 3.08
3536 14808 9.785982 AAGGAGCAAATATTAGAAGACCTATTC 57.214 33.333 0.00 0.00 0.00 1.75
3537 14809 9.165057 AGGAGCAAATATTAGAAGACCTATTCT 57.835 33.333 0.00 0.00 42.20 2.40
3538 14810 9.213799 GGAGCAAATATTAGAAGACCTATTCTG 57.786 37.037 0.00 0.00 39.81 3.02
3539 14811 8.614469 AGCAAATATTAGAAGACCTATTCTGC 57.386 34.615 0.00 0.00 39.81 4.26
3540 14812 8.213679 AGCAAATATTAGAAGACCTATTCTGCA 58.786 33.333 0.00 0.00 39.81 4.41
3541 14813 8.286097 GCAAATATTAGAAGACCTATTCTGCAC 58.714 37.037 0.00 0.00 39.81 4.57
3542 14814 9.330063 CAAATATTAGAAGACCTATTCTGCACA 57.670 33.333 0.00 0.00 39.81 4.57
3543 14815 9.905713 AAATATTAGAAGACCTATTCTGCACAA 57.094 29.630 0.00 0.00 39.81 3.33
3544 14816 8.894768 ATATTAGAAGACCTATTCTGCACAAC 57.105 34.615 0.00 0.00 39.81 3.32
3545 14817 4.899352 AGAAGACCTATTCTGCACAACT 57.101 40.909 0.00 0.00 38.12 3.16
3546 14818 4.826556 AGAAGACCTATTCTGCACAACTC 58.173 43.478 0.00 0.00 38.12 3.01
3547 14819 3.618690 AGACCTATTCTGCACAACTCC 57.381 47.619 0.00 0.00 31.12 3.85
3548 14820 2.906389 AGACCTATTCTGCACAACTCCA 59.094 45.455 0.00 0.00 31.12 3.86
3549 14821 3.327757 AGACCTATTCTGCACAACTCCAA 59.672 43.478 0.00 0.00 31.12 3.53
3550 14822 4.072131 GACCTATTCTGCACAACTCCAAA 58.928 43.478 0.00 0.00 0.00 3.28
3551 14823 4.469657 ACCTATTCTGCACAACTCCAAAA 58.530 39.130 0.00 0.00 0.00 2.44
3552 14824 4.520492 ACCTATTCTGCACAACTCCAAAAG 59.480 41.667 0.00 0.00 0.00 2.27
3553 14825 4.520492 CCTATTCTGCACAACTCCAAAAGT 59.480 41.667 0.00 0.00 41.10 2.66
3554 14826 4.574599 ATTCTGCACAACTCCAAAAGTC 57.425 40.909 0.00 0.00 37.17 3.01
3555 14827 2.997980 TCTGCACAACTCCAAAAGTCA 58.002 42.857 0.00 0.00 37.17 3.41
3556 14828 3.554934 TCTGCACAACTCCAAAAGTCAT 58.445 40.909 0.00 0.00 37.17 3.06
3557 14829 3.316029 TCTGCACAACTCCAAAAGTCATG 59.684 43.478 0.00 0.00 37.17 3.07
3558 14830 3.286353 TGCACAACTCCAAAAGTCATGA 58.714 40.909 0.00 0.00 37.17 3.07
3559 14831 3.890756 TGCACAACTCCAAAAGTCATGAT 59.109 39.130 0.00 0.00 37.17 2.45
3560 14832 4.022935 TGCACAACTCCAAAAGTCATGATC 60.023 41.667 0.00 0.00 37.17 2.92
3561 14833 4.022935 GCACAACTCCAAAAGTCATGATCA 60.023 41.667 0.00 0.00 37.17 2.92
3562 14834 5.455392 CACAACTCCAAAAGTCATGATCAC 58.545 41.667 0.00 0.00 37.17 3.06
3563 14835 5.008911 CACAACTCCAAAAGTCATGATCACA 59.991 40.000 0.00 0.00 37.17 3.58
3564 14836 5.771666 ACAACTCCAAAAGTCATGATCACAT 59.228 36.000 0.00 0.00 37.17 3.21
3576 14848 5.857822 CATGATCACATGCGAGATTGTAT 57.142 39.130 0.00 0.00 45.51 2.29
3577 14849 5.855235 CATGATCACATGCGAGATTGTATC 58.145 41.667 0.00 0.00 45.51 2.24
3578 14850 4.947645 TGATCACATGCGAGATTGTATCA 58.052 39.130 0.00 0.00 0.00 2.15
3579 14851 5.544650 TGATCACATGCGAGATTGTATCAT 58.455 37.500 0.00 0.00 0.00 2.45
3580 14852 5.636543 TGATCACATGCGAGATTGTATCATC 59.363 40.000 0.00 0.00 0.00 2.92
3581 14853 4.947645 TCACATGCGAGATTGTATCATCA 58.052 39.130 0.00 0.00 0.00 3.07
3582 14854 5.544650 TCACATGCGAGATTGTATCATCAT 58.455 37.500 0.00 0.00 0.00 2.45
3583 14855 5.407387 TCACATGCGAGATTGTATCATCATG 59.593 40.000 0.00 0.00 37.92 3.07
3584 14856 5.178809 CACATGCGAGATTGTATCATCATGT 59.821 40.000 0.00 11.83 41.64 3.21
3585 14857 5.761726 ACATGCGAGATTGTATCATCATGTT 59.238 36.000 0.00 0.00 39.92 2.71
3586 14858 6.930722 ACATGCGAGATTGTATCATCATGTTA 59.069 34.615 0.00 0.00 39.92 2.41
3587 14859 7.442062 ACATGCGAGATTGTATCATCATGTTAA 59.558 33.333 0.00 0.00 39.92 2.01
3588 14860 7.967890 TGCGAGATTGTATCATCATGTTAAT 57.032 32.000 0.00 0.00 0.00 1.40
3589 14861 9.657419 ATGCGAGATTGTATCATCATGTTAATA 57.343 29.630 0.00 0.00 0.00 0.98
3590 14862 9.657419 TGCGAGATTGTATCATCATGTTAATAT 57.343 29.630 0.00 0.00 0.00 1.28
3591 14863 9.911980 GCGAGATTGTATCATCATGTTAATATG 57.088 33.333 5.88 5.88 0.00 1.78
3602 14874 9.061252 TCATCATGTTAATATGGAGGATATGGT 57.939 33.333 11.75 0.00 0.00 3.55
3603 14875 9.334947 CATCATGTTAATATGGAGGATATGGTC 57.665 37.037 11.75 0.00 0.00 4.02
3604 14876 8.685257 TCATGTTAATATGGAGGATATGGTCT 57.315 34.615 11.75 0.00 0.00 3.85
3605 14877 9.782900 TCATGTTAATATGGAGGATATGGTCTA 57.217 33.333 11.75 0.00 0.00 2.59
3608 14880 9.560860 TGTTAATATGGAGGATATGGTCTATGT 57.439 33.333 0.00 0.00 0.00 2.29
3609 14881 9.823647 GTTAATATGGAGGATATGGTCTATGTG 57.176 37.037 0.00 0.00 0.00 3.21
3610 14882 7.443302 AATATGGAGGATATGGTCTATGTGG 57.557 40.000 0.00 0.00 0.00 4.17
3611 14883 4.213531 TGGAGGATATGGTCTATGTGGT 57.786 45.455 0.00 0.00 0.00 4.16
3612 14884 4.160329 TGGAGGATATGGTCTATGTGGTC 58.840 47.826 0.00 0.00 0.00 4.02
3613 14885 3.193691 GGAGGATATGGTCTATGTGGTCG 59.806 52.174 0.00 0.00 0.00 4.79
3614 14886 3.165875 AGGATATGGTCTATGTGGTCGG 58.834 50.000 0.00 0.00 0.00 4.79
3615 14887 3.162666 GGATATGGTCTATGTGGTCGGA 58.837 50.000 0.00 0.00 0.00 4.55
3616 14888 3.769844 GGATATGGTCTATGTGGTCGGAT 59.230 47.826 0.00 0.00 0.00 4.18
3617 14889 4.223032 GGATATGGTCTATGTGGTCGGATT 59.777 45.833 0.00 0.00 0.00 3.01
3618 14890 5.280011 GGATATGGTCTATGTGGTCGGATTT 60.280 44.000 0.00 0.00 0.00 2.17
3619 14891 3.260475 TGGTCTATGTGGTCGGATTTG 57.740 47.619 0.00 0.00 0.00 2.32
3620 14892 2.835156 TGGTCTATGTGGTCGGATTTGA 59.165 45.455 0.00 0.00 0.00 2.69
3621 14893 3.195661 GGTCTATGTGGTCGGATTTGAC 58.804 50.000 0.00 0.00 38.17 3.18
3622 14894 3.118738 GGTCTATGTGGTCGGATTTGACT 60.119 47.826 0.00 0.00 38.91 3.41
3623 14895 4.113354 GTCTATGTGGTCGGATTTGACTC 58.887 47.826 0.00 0.00 38.91 3.36
3624 14896 3.767131 TCTATGTGGTCGGATTTGACTCA 59.233 43.478 0.00 0.00 38.91 3.41
3625 14897 2.163818 TGTGGTCGGATTTGACTCAC 57.836 50.000 7.90 7.90 38.96 3.51
3626 14898 1.068474 GTGGTCGGATTTGACTCACG 58.932 55.000 0.00 0.00 38.91 4.35
3627 14899 0.037697 TGGTCGGATTTGACTCACGG 60.038 55.000 0.00 0.00 38.91 4.94
3628 14900 0.037605 GGTCGGATTTGACTCACGGT 60.038 55.000 0.00 0.00 38.91 4.83
3629 14901 1.203052 GGTCGGATTTGACTCACGGTA 59.797 52.381 0.00 0.00 38.91 4.02
3630 14902 2.353011 GGTCGGATTTGACTCACGGTAA 60.353 50.000 0.00 0.00 38.91 2.85
3631 14903 3.319755 GTCGGATTTGACTCACGGTAAA 58.680 45.455 0.00 0.00 35.95 2.01
3632 14904 3.367025 GTCGGATTTGACTCACGGTAAAG 59.633 47.826 0.00 0.00 35.95 1.85
3633 14905 2.093783 CGGATTTGACTCACGGTAAAGC 59.906 50.000 0.00 0.00 0.00 3.51
3634 14906 3.335579 GGATTTGACTCACGGTAAAGCT 58.664 45.455 0.00 0.00 0.00 3.74
3635 14907 3.125316 GGATTTGACTCACGGTAAAGCTG 59.875 47.826 0.00 0.00 0.00 4.24
3636 14908 2.902705 TTGACTCACGGTAAAGCTGT 57.097 45.000 0.00 0.00 37.11 4.40
3637 14909 2.433868 TGACTCACGGTAAAGCTGTC 57.566 50.000 0.00 0.00 33.66 3.51
3638 14910 1.000506 TGACTCACGGTAAAGCTGTCC 59.999 52.381 0.00 0.00 33.66 4.02
3639 14911 0.320697 ACTCACGGTAAAGCTGTCCC 59.679 55.000 0.00 0.00 33.66 4.46
3640 14912 0.320374 CTCACGGTAAAGCTGTCCCA 59.680 55.000 0.00 0.00 33.66 4.37
3641 14913 0.034337 TCACGGTAAAGCTGTCCCAC 59.966 55.000 0.00 0.00 33.66 4.61
3642 14914 0.953960 CACGGTAAAGCTGTCCCACC 60.954 60.000 0.00 0.00 33.66 4.61
3643 14915 1.125711 ACGGTAAAGCTGTCCCACCT 61.126 55.000 0.00 0.00 28.68 4.00
3644 14916 0.673644 CGGTAAAGCTGTCCCACCTG 60.674 60.000 0.00 0.00 0.00 4.00
3645 14917 0.400594 GGTAAAGCTGTCCCACCTGT 59.599 55.000 0.00 0.00 0.00 4.00
3646 14918 1.523758 GTAAAGCTGTCCCACCTGTG 58.476 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 233 8.027771 CGGAATAGTATACAAAGTACTCCATCC 58.972 40.741 5.50 0.00 34.43 3.51
393 401 5.853936 TCCAATGTCTAAAGATATGGACGG 58.146 41.667 7.06 0.00 0.00 4.79
429 3773 1.682854 CACTGGCCACAAGTGAACAAT 59.317 47.619 16.62 0.00 35.75 2.71
488 3832 6.209589 AGTTCCGTAGCATAGATCATACATGT 59.790 38.462 2.69 2.69 0.00 3.21
502 3846 6.978659 CAGAAATCTTGTATAGTTCCGTAGCA 59.021 38.462 0.00 0.00 0.00 3.49
503 3847 6.421202 CCAGAAATCTTGTATAGTTCCGTAGC 59.579 42.308 0.00 0.00 0.00 3.58
504 3848 7.713750 TCCAGAAATCTTGTATAGTTCCGTAG 58.286 38.462 0.00 0.00 0.00 3.51
505 3849 7.649533 TCCAGAAATCTTGTATAGTTCCGTA 57.350 36.000 0.00 0.00 0.00 4.02
506 3850 6.540438 TCCAGAAATCTTGTATAGTTCCGT 57.460 37.500 0.00 0.00 0.00 4.69
571 3917 8.506196 TTAGGGATTCACCTTATAATGTAGCT 57.494 34.615 0.00 0.00 42.09 3.32
572 3918 9.740710 ATTTAGGGATTCACCTTATAATGTAGC 57.259 33.333 0.00 0.00 42.09 3.58
627 3973 7.921786 TCTACAAATGTGGTTTATCAAGAGG 57.078 36.000 0.00 0.00 0.00 3.69
669 4015 0.395586 TGTGAAAGCTTGGGCACACT 60.396 50.000 19.89 0.00 41.70 3.55
750 4203 7.283329 AGTTCTGTTATAGACATGGGGATTTC 58.717 38.462 0.00 0.00 37.69 2.17
766 4219 8.635328 GGTGGAAATTCCTTTAAAGTTCTGTTA 58.365 33.333 13.78 0.00 37.46 2.41
783 4236 4.351111 AGTGGAAGTGAGTAGGTGGAAATT 59.649 41.667 0.00 0.00 0.00 1.82
784 4237 3.910627 AGTGGAAGTGAGTAGGTGGAAAT 59.089 43.478 0.00 0.00 0.00 2.17
785 4238 3.314693 AGTGGAAGTGAGTAGGTGGAAA 58.685 45.455 0.00 0.00 0.00 3.13
787 4240 2.696526 AGTGGAAGTGAGTAGGTGGA 57.303 50.000 0.00 0.00 0.00 4.02
905 4464 4.560108 GCATGGCATTCATTAATCTCCACC 60.560 45.833 0.00 0.00 32.92 4.61
906 4465 4.038282 TGCATGGCATTCATTAATCTCCAC 59.962 41.667 0.00 0.00 32.92 4.02
907 4466 4.216708 TGCATGGCATTCATTAATCTCCA 58.783 39.130 0.00 0.00 32.92 3.86
908 4467 4.521639 TCTGCATGGCATTCATTAATCTCC 59.478 41.667 0.00 0.00 38.13 3.71
909 4468 5.458891 GTCTGCATGGCATTCATTAATCTC 58.541 41.667 0.00 0.00 38.13 2.75
951 4516 1.749334 ATAGTAGTGGCTGGCTCCGC 61.749 60.000 2.00 2.40 36.90 5.54
952 4517 1.617322 TATAGTAGTGGCTGGCTCCG 58.383 55.000 2.00 0.00 0.00 4.63
953 4518 3.804063 GCTTTATAGTAGTGGCTGGCTCC 60.804 52.174 2.00 0.00 0.00 4.70
954 4519 3.394719 GCTTTATAGTAGTGGCTGGCTC 58.605 50.000 2.00 0.00 0.00 4.70
1028 4597 9.225201 CTTTTTGCTATACTTACGTACGTATCA 57.775 33.333 27.30 15.49 0.00 2.15
1029 4598 9.226345 ACTTTTTGCTATACTTACGTACGTATC 57.774 33.333 27.30 13.52 0.00 2.24
1062 4639 5.923684 GCCGATCTTTTGGAAGAGTATAGAG 59.076 44.000 0.00 0.00 44.65 2.43
1064 4641 4.991687 GGCCGATCTTTTGGAAGAGTATAG 59.008 45.833 0.00 0.00 44.65 1.31
1065 4642 4.407621 TGGCCGATCTTTTGGAAGAGTATA 59.592 41.667 0.00 0.00 44.65 1.47
1066 4643 3.199946 TGGCCGATCTTTTGGAAGAGTAT 59.800 43.478 0.00 0.00 44.65 2.12
1067 4644 2.569853 TGGCCGATCTTTTGGAAGAGTA 59.430 45.455 0.00 0.00 44.65 2.59
1068 4645 1.351017 TGGCCGATCTTTTGGAAGAGT 59.649 47.619 0.00 0.00 44.65 3.24
1069 4646 2.113860 TGGCCGATCTTTTGGAAGAG 57.886 50.000 0.00 0.00 44.65 2.85
1105 4682 1.617018 CCGCTCCACCTCTGATTCCA 61.617 60.000 0.00 0.00 0.00 3.53
1178 4755 2.427245 CGTCCTGGGGCACTAGGAG 61.427 68.421 23.31 12.11 40.90 3.69
1240 4817 0.744057 GCTTCTCCTTGAGCTCAGGC 60.744 60.000 19.89 11.13 39.06 4.85
1292 7144 3.417969 GCAGATTATAGTCGTTGACGTCG 59.582 47.826 11.62 0.00 40.80 5.12
1749 9283 1.587613 GAGCGTCATCTCGGAGCAC 60.588 63.158 0.00 0.00 0.00 4.40
2055 9592 4.664677 GCAGCACCACCGTCGTCT 62.665 66.667 0.00 0.00 0.00 4.18
2380 9957 2.203209 GCCGTGGATGGATGGACC 60.203 66.667 0.00 0.00 39.54 4.46
2381 9958 2.203209 GGCCGTGGATGGATGGAC 60.203 66.667 0.00 0.00 0.00 4.02
2382 9959 3.860605 CGGCCGTGGATGGATGGA 61.861 66.667 19.50 0.00 0.00 3.41
2383 9960 4.935495 CCGGCCGTGGATGGATGG 62.935 72.222 26.12 0.00 0.00 3.51
2384 9961 4.175337 ACCGGCCGTGGATGGATG 62.175 66.667 26.12 7.62 0.00 3.51
2385 9962 4.175337 CACCGGCCGTGGATGGAT 62.175 66.667 26.12 0.00 38.96 3.41
2491 10073 5.047943 TGTCTGCCTTCTTTGACTACTACTC 60.048 44.000 0.00 0.00 0.00 2.59
2492 10074 4.833380 TGTCTGCCTTCTTTGACTACTACT 59.167 41.667 0.00 0.00 0.00 2.57
2493 10075 5.135508 TGTCTGCCTTCTTTGACTACTAC 57.864 43.478 0.00 0.00 0.00 2.73
2515 10097 4.218635 CAGAGGTATATATGTGACGTGGCT 59.781 45.833 0.00 0.00 0.00 4.75
2736 10321 7.308435 AGTTATGCTCAGTTTGCATCTTTTAC 58.692 34.615 4.42 0.00 46.80 2.01
2759 10589 7.554118 CACCACAAATAACCTAATCATCTGAGT 59.446 37.037 0.00 0.00 0.00 3.41
2768 10598 5.646215 TGGTTCCACCACAAATAACCTAAT 58.354 37.500 0.00 0.00 44.79 1.73
2787 10617 1.077265 CAATCCTGGTGGGCTGGTT 59.923 57.895 0.00 0.00 34.39 3.67
2799 10629 2.840651 AGCACCTAACTAGCACAATCCT 59.159 45.455 0.00 0.00 0.00 3.24
2807 10637 8.507249 CCATAAAAATATGAGCACCTAACTAGC 58.493 37.037 0.00 0.00 0.00 3.42
2830 10660 4.580580 GCCGGAAAGACTGAATAAATCCAT 59.419 41.667 5.05 0.00 0.00 3.41
2860 10691 4.901849 AGAATCGTCTCCTCCCATTGAATA 59.098 41.667 0.00 0.00 0.00 1.75
2879 10710 0.739561 GCCTCCGTAGTCGACAGAAT 59.260 55.000 19.50 0.00 39.71 2.40
2904 10735 4.836825 TCTTGAGATTGATGAAGTCACCC 58.163 43.478 0.00 0.00 36.32 4.61
2992 10823 6.363357 GCTACTTGCTTGGTATTCAAAAACAG 59.637 38.462 0.00 0.00 38.95 3.16
2993 10824 6.183360 TGCTACTTGCTTGGTATTCAAAAACA 60.183 34.615 0.00 0.00 43.37 2.83
3005 10836 2.096496 CCGATTCTTGCTACTTGCTTGG 59.904 50.000 0.00 0.00 43.37 3.61
3025 10856 1.000145 GAGAGCACGAACGGATTTCC 59.000 55.000 0.00 0.00 0.00 3.13
3026 10857 1.000145 GGAGAGCACGAACGGATTTC 59.000 55.000 0.00 0.00 0.00 2.17
3028 10859 1.218316 GGGAGAGCACGAACGGATT 59.782 57.895 0.00 0.00 0.00 3.01
3030 10861 3.744719 CGGGAGAGCACGAACGGA 61.745 66.667 0.00 0.00 45.89 4.69
3031 10862 4.796231 CCGGGAGAGCACGAACGG 62.796 72.222 0.00 0.00 45.89 4.44
3032 10863 4.796231 CCCGGGAGAGCACGAACG 62.796 72.222 18.48 0.00 45.89 3.95
3033 10864 3.358076 CTCCCGGGAGAGCACGAAC 62.358 68.421 42.70 0.00 45.89 3.95
3034 10865 3.068691 CTCCCGGGAGAGCACGAA 61.069 66.667 42.70 8.82 45.89 3.85
3153 10998 5.938438 TTTTGCACAGGCCAAAATATTTC 57.062 34.783 5.01 0.00 40.13 2.17
3185 11030 6.012858 AGAGTGACATTTTGGGGTAACATCTA 60.013 38.462 0.00 0.00 39.74 1.98
3187 11032 5.010282 AGAGTGACATTTTGGGGTAACATC 58.990 41.667 0.00 0.00 39.74 3.06
3228 14499 1.381165 AAACGGAGCAGCGGTGTTTT 61.381 50.000 17.07 2.17 29.01 2.43
3261 14532 1.238439 AGTGTCGCAAACATCCTTGG 58.762 50.000 0.00 0.00 40.80 3.61
3264 14535 2.066262 CGTTAGTGTCGCAAACATCCT 58.934 47.619 0.00 0.00 40.80 3.24
3330 14601 6.811253 TCCTGCGTGAATAGTAAACAAAAT 57.189 33.333 0.00 0.00 0.00 1.82
3350 14622 3.884895 TGCAAAATGGACGTATCATCCT 58.115 40.909 4.62 0.00 37.13 3.24
3354 14626 4.497842 GCATGATGCAAAATGGACGTATCA 60.498 41.667 13.36 0.00 44.26 2.15
3355 14627 3.976942 GCATGATGCAAAATGGACGTATC 59.023 43.478 13.36 0.00 44.26 2.24
3356 14628 3.968649 GCATGATGCAAAATGGACGTAT 58.031 40.909 13.36 0.00 44.26 3.06
3357 14629 3.419264 GCATGATGCAAAATGGACGTA 57.581 42.857 13.36 0.00 44.26 3.57
3358 14630 2.282701 GCATGATGCAAAATGGACGT 57.717 45.000 13.36 0.00 44.26 4.34
3382 14654 9.578576 AGCCCATAATGCAATAAATATCGATAT 57.421 29.630 12.25 12.25 0.00 1.63
3383 14655 8.839343 CAGCCCATAATGCAATAAATATCGATA 58.161 33.333 7.75 7.75 0.00 2.92
3384 14656 7.340232 ACAGCCCATAATGCAATAAATATCGAT 59.660 33.333 2.16 2.16 0.00 3.59
3385 14657 6.658816 ACAGCCCATAATGCAATAAATATCGA 59.341 34.615 0.00 0.00 0.00 3.59
3386 14658 6.855836 ACAGCCCATAATGCAATAAATATCG 58.144 36.000 0.00 0.00 0.00 2.92
3390 14662 9.927668 GTAATAACAGCCCATAATGCAATAAAT 57.072 29.630 0.00 0.00 0.00 1.40
3391 14663 8.918116 TGTAATAACAGCCCATAATGCAATAAA 58.082 29.630 0.00 0.00 0.00 1.40
3392 14664 8.356657 GTGTAATAACAGCCCATAATGCAATAA 58.643 33.333 0.00 0.00 35.91 1.40
3393 14665 7.503902 TGTGTAATAACAGCCCATAATGCAATA 59.496 33.333 0.00 0.00 35.91 1.90
3394 14666 6.323482 TGTGTAATAACAGCCCATAATGCAAT 59.677 34.615 0.00 0.00 35.91 3.56
3395 14667 5.654209 TGTGTAATAACAGCCCATAATGCAA 59.346 36.000 0.00 0.00 35.91 4.08
3396 14668 5.196695 TGTGTAATAACAGCCCATAATGCA 58.803 37.500 0.00 0.00 35.91 3.96
3397 14669 5.766150 TGTGTAATAACAGCCCATAATGC 57.234 39.130 0.00 0.00 35.91 3.56
3398 14670 9.844790 CATAATGTGTAATAACAGCCCATAATG 57.155 33.333 0.00 0.00 35.91 1.90
3399 14671 9.586732 ACATAATGTGTAATAACAGCCCATAAT 57.413 29.630 0.00 0.00 39.91 1.28
3400 14672 8.988546 ACATAATGTGTAATAACAGCCCATAA 57.011 30.769 0.00 0.00 39.91 1.90
3401 14673 8.214364 TGACATAATGTGTAATAACAGCCCATA 58.786 33.333 0.00 0.00 42.36 2.74
3402 14674 7.013274 GTGACATAATGTGTAATAACAGCCCAT 59.987 37.037 0.00 0.00 42.36 4.00
3403 14675 6.317642 GTGACATAATGTGTAATAACAGCCCA 59.682 38.462 0.00 0.00 42.36 5.36
3404 14676 6.317642 TGTGACATAATGTGTAATAACAGCCC 59.682 38.462 0.00 0.00 42.36 5.19
3405 14677 7.315247 TGTGACATAATGTGTAATAACAGCC 57.685 36.000 0.00 0.00 42.36 4.85
3415 14687 9.135189 AGGCATAAATATTGTGACATAATGTGT 57.865 29.630 7.62 0.00 45.83 3.72
3423 14695 9.494271 GAGAGAATAGGCATAAATATTGTGACA 57.506 33.333 9.03 0.00 31.29 3.58
3424 14696 9.717942 AGAGAGAATAGGCATAAATATTGTGAC 57.282 33.333 5.53 2.76 0.00 3.67
3436 14708 9.566432 CCTTGTAAAATAAGAGAGAATAGGCAT 57.434 33.333 0.00 0.00 0.00 4.40
3437 14709 8.548877 ACCTTGTAAAATAAGAGAGAATAGGCA 58.451 33.333 0.00 0.00 0.00 4.75
3438 14710 8.966069 ACCTTGTAAAATAAGAGAGAATAGGC 57.034 34.615 0.00 0.00 0.00 3.93
3444 14716 9.199982 CGTGTAAACCTTGTAAAATAAGAGAGA 57.800 33.333 0.00 0.00 0.00 3.10
3445 14717 9.199982 TCGTGTAAACCTTGTAAAATAAGAGAG 57.800 33.333 0.00 0.00 0.00 3.20
3446 14718 9.545105 TTCGTGTAAACCTTGTAAAATAAGAGA 57.455 29.630 0.00 0.00 0.00 3.10
3447 14719 9.807386 CTTCGTGTAAACCTTGTAAAATAAGAG 57.193 33.333 0.00 0.00 0.00 2.85
3448 14720 9.545105 TCTTCGTGTAAACCTTGTAAAATAAGA 57.455 29.630 0.00 0.00 0.00 2.10
3449 14721 9.807386 CTCTTCGTGTAAACCTTGTAAAATAAG 57.193 33.333 0.00 0.00 0.00 1.73
3450 14722 8.776470 CCTCTTCGTGTAAACCTTGTAAAATAA 58.224 33.333 0.00 0.00 0.00 1.40
3451 14723 7.388500 CCCTCTTCGTGTAAACCTTGTAAAATA 59.612 37.037 0.00 0.00 0.00 1.40
3452 14724 6.206048 CCCTCTTCGTGTAAACCTTGTAAAAT 59.794 38.462 0.00 0.00 0.00 1.82
3453 14725 5.528320 CCCTCTTCGTGTAAACCTTGTAAAA 59.472 40.000 0.00 0.00 0.00 1.52
3454 14726 5.058490 CCCTCTTCGTGTAAACCTTGTAAA 58.942 41.667 0.00 0.00 0.00 2.01
3455 14727 4.344679 TCCCTCTTCGTGTAAACCTTGTAA 59.655 41.667 0.00 0.00 0.00 2.41
3456 14728 3.896888 TCCCTCTTCGTGTAAACCTTGTA 59.103 43.478 0.00 0.00 0.00 2.41
3457 14729 2.701951 TCCCTCTTCGTGTAAACCTTGT 59.298 45.455 0.00 0.00 0.00 3.16
3458 14730 3.006537 TCTCCCTCTTCGTGTAAACCTTG 59.993 47.826 0.00 0.00 0.00 3.61
3459 14731 3.236896 TCTCCCTCTTCGTGTAAACCTT 58.763 45.455 0.00 0.00 0.00 3.50
3460 14732 2.885616 TCTCCCTCTTCGTGTAAACCT 58.114 47.619 0.00 0.00 0.00 3.50
3461 14733 3.672767 TTCTCCCTCTTCGTGTAAACC 57.327 47.619 0.00 0.00 0.00 3.27
3462 14734 3.371285 GCATTCTCCCTCTTCGTGTAAAC 59.629 47.826 0.00 0.00 0.00 2.01
3463 14735 3.596214 GCATTCTCCCTCTTCGTGTAAA 58.404 45.455 0.00 0.00 0.00 2.01
3464 14736 2.093658 GGCATTCTCCCTCTTCGTGTAA 60.094 50.000 0.00 0.00 0.00 2.41
3465 14737 1.480954 GGCATTCTCCCTCTTCGTGTA 59.519 52.381 0.00 0.00 0.00 2.90
3466 14738 0.250513 GGCATTCTCCCTCTTCGTGT 59.749 55.000 0.00 0.00 0.00 4.49
3467 14739 0.807667 CGGCATTCTCCCTCTTCGTG 60.808 60.000 0.00 0.00 0.00 4.35
3468 14740 1.517832 CGGCATTCTCCCTCTTCGT 59.482 57.895 0.00 0.00 0.00 3.85
3469 14741 1.227380 CCGGCATTCTCCCTCTTCG 60.227 63.158 0.00 0.00 0.00 3.79
3470 14742 1.524849 GCCGGCATTCTCCCTCTTC 60.525 63.158 24.80 0.00 0.00 2.87
3471 14743 2.262774 CTGCCGGCATTCTCCCTCTT 62.263 60.000 32.87 0.00 0.00 2.85
3472 14744 2.688666 TGCCGGCATTCTCCCTCT 60.689 61.111 29.03 0.00 0.00 3.69
3473 14745 2.203126 CTGCCGGCATTCTCCCTC 60.203 66.667 32.87 0.00 0.00 4.30
3474 14746 4.496336 GCTGCCGGCATTCTCCCT 62.496 66.667 32.87 0.00 41.35 4.20
3475 14747 4.496336 AGCTGCCGGCATTCTCCC 62.496 66.667 32.87 13.85 44.79 4.30
3476 14748 3.207669 CAGCTGCCGGCATTCTCC 61.208 66.667 32.87 15.69 44.79 3.71
3477 14749 3.207669 CCAGCTGCCGGCATTCTC 61.208 66.667 32.87 18.90 44.79 2.87
3478 14750 2.563013 ATTCCAGCTGCCGGCATTCT 62.563 55.000 32.87 26.10 44.79 2.40
3479 14751 1.669999 AATTCCAGCTGCCGGCATTC 61.670 55.000 32.87 24.20 44.79 2.67
3480 14752 1.669999 GAATTCCAGCTGCCGGCATT 61.670 55.000 32.87 19.95 44.79 3.56
3481 14753 2.043652 AATTCCAGCTGCCGGCAT 60.044 55.556 32.87 14.47 44.79 4.40
3482 14754 2.751436 GAATTCCAGCTGCCGGCA 60.751 61.111 30.59 30.59 44.79 5.69
3483 14755 2.439156 AGAATTCCAGCTGCCGGC 60.439 61.111 22.73 22.73 42.19 6.13
3484 14756 2.117156 CCAGAATTCCAGCTGCCGG 61.117 63.158 8.66 0.00 0.00 6.13
3485 14757 2.117156 CCCAGAATTCCAGCTGCCG 61.117 63.158 8.66 0.00 0.00 5.69
3486 14758 2.421399 GCCCAGAATTCCAGCTGCC 61.421 63.158 8.66 0.00 0.00 4.85
3487 14759 1.379576 AGCCCAGAATTCCAGCTGC 60.380 57.895 8.66 0.00 31.23 5.25
3488 14760 2.490165 CAGCCCAGAATTCCAGCTG 58.510 57.895 20.84 20.84 44.31 4.24
3489 14761 1.210204 TCCAGCCCAGAATTCCAGCT 61.210 55.000 0.65 5.25 0.00 4.24
3490 14762 0.323725 TTCCAGCCCAGAATTCCAGC 60.324 55.000 0.65 2.80 0.00 4.85
3491 14763 2.220653 TTTCCAGCCCAGAATTCCAG 57.779 50.000 0.65 0.00 0.00 3.86
3492 14764 2.528564 CTTTTCCAGCCCAGAATTCCA 58.471 47.619 0.65 0.00 0.00 3.53
3493 14765 1.827344 CCTTTTCCAGCCCAGAATTCC 59.173 52.381 0.65 0.00 0.00 3.01
3494 14766 2.757314 CTCCTTTTCCAGCCCAGAATTC 59.243 50.000 0.00 0.00 0.00 2.17
3495 14767 2.812658 CTCCTTTTCCAGCCCAGAATT 58.187 47.619 0.00 0.00 0.00 2.17
3496 14768 1.618074 GCTCCTTTTCCAGCCCAGAAT 60.618 52.381 0.00 0.00 0.00 2.40
3497 14769 0.251341 GCTCCTTTTCCAGCCCAGAA 60.251 55.000 0.00 0.00 0.00 3.02
3498 14770 1.380302 GCTCCTTTTCCAGCCCAGA 59.620 57.895 0.00 0.00 0.00 3.86
3499 14771 0.540365 TTGCTCCTTTTCCAGCCCAG 60.540 55.000 0.00 0.00 34.47 4.45
3500 14772 0.105760 TTTGCTCCTTTTCCAGCCCA 60.106 50.000 0.00 0.00 34.47 5.36
3501 14773 1.269958 ATTTGCTCCTTTTCCAGCCC 58.730 50.000 0.00 0.00 34.47 5.19
3502 14774 4.743057 AATATTTGCTCCTTTTCCAGCC 57.257 40.909 0.00 0.00 34.47 4.85
3503 14775 6.699575 TCTAATATTTGCTCCTTTTCCAGC 57.300 37.500 0.00 0.00 36.08 4.85
3504 14776 8.401709 GTCTTCTAATATTTGCTCCTTTTCCAG 58.598 37.037 0.00 0.00 0.00 3.86
3505 14777 7.339466 GGTCTTCTAATATTTGCTCCTTTTCCA 59.661 37.037 0.00 0.00 0.00 3.53
3506 14778 7.558081 AGGTCTTCTAATATTTGCTCCTTTTCC 59.442 37.037 0.00 0.00 0.00 3.13
3507 14779 8.512966 AGGTCTTCTAATATTTGCTCCTTTTC 57.487 34.615 0.00 0.00 0.00 2.29
3510 14782 9.785982 GAATAGGTCTTCTAATATTTGCTCCTT 57.214 33.333 0.00 0.00 0.00 3.36
3511 14783 9.165057 AGAATAGGTCTTCTAATATTTGCTCCT 57.835 33.333 0.00 1.24 33.73 3.69
3512 14784 9.213799 CAGAATAGGTCTTCTAATATTTGCTCC 57.786 37.037 0.00 0.00 33.73 4.70
3513 14785 8.716909 GCAGAATAGGTCTTCTAATATTTGCTC 58.283 37.037 0.00 0.00 33.73 4.26
3514 14786 8.213679 TGCAGAATAGGTCTTCTAATATTTGCT 58.786 33.333 0.00 0.00 33.73 3.91
3515 14787 8.286097 GTGCAGAATAGGTCTTCTAATATTTGC 58.714 37.037 0.00 0.00 33.73 3.68
3516 14788 9.330063 TGTGCAGAATAGGTCTTCTAATATTTG 57.670 33.333 0.00 0.00 33.73 2.32
3517 14789 9.905713 TTGTGCAGAATAGGTCTTCTAATATTT 57.094 29.630 0.00 0.00 33.73 1.40
3518 14790 9.331282 GTTGTGCAGAATAGGTCTTCTAATATT 57.669 33.333 0.00 0.00 33.73 1.28
3519 14791 8.709308 AGTTGTGCAGAATAGGTCTTCTAATAT 58.291 33.333 0.00 0.00 33.73 1.28
3520 14792 8.079211 AGTTGTGCAGAATAGGTCTTCTAATA 57.921 34.615 0.00 0.00 33.73 0.98
3521 14793 6.951971 AGTTGTGCAGAATAGGTCTTCTAAT 58.048 36.000 0.00 0.00 33.73 1.73
3522 14794 6.360370 AGTTGTGCAGAATAGGTCTTCTAA 57.640 37.500 0.00 0.00 33.73 2.10
3523 14795 5.105310 GGAGTTGTGCAGAATAGGTCTTCTA 60.105 44.000 0.00 0.00 33.73 2.10
3524 14796 4.323104 GGAGTTGTGCAGAATAGGTCTTCT 60.323 45.833 0.00 0.00 35.88 2.85
3525 14797 3.935828 GGAGTTGTGCAGAATAGGTCTTC 59.064 47.826 0.00 0.00 32.70 2.87
3526 14798 3.327757 TGGAGTTGTGCAGAATAGGTCTT 59.672 43.478 0.00 0.00 32.70 3.01
3527 14799 2.906389 TGGAGTTGTGCAGAATAGGTCT 59.094 45.455 0.00 0.00 36.88 3.85
3528 14800 3.334583 TGGAGTTGTGCAGAATAGGTC 57.665 47.619 0.00 0.00 0.00 3.85
3529 14801 3.788227 TTGGAGTTGTGCAGAATAGGT 57.212 42.857 0.00 0.00 0.00 3.08
3530 14802 4.520492 ACTTTTGGAGTTGTGCAGAATAGG 59.480 41.667 0.00 0.00 33.92 2.57
3531 14803 5.239306 TGACTTTTGGAGTTGTGCAGAATAG 59.761 40.000 0.00 0.00 39.19 1.73
3532 14804 5.129634 TGACTTTTGGAGTTGTGCAGAATA 58.870 37.500 0.00 0.00 39.19 1.75
3533 14805 3.953612 TGACTTTTGGAGTTGTGCAGAAT 59.046 39.130 0.00 0.00 39.19 2.40
3534 14806 3.351740 TGACTTTTGGAGTTGTGCAGAA 58.648 40.909 0.00 0.00 39.19 3.02
3535 14807 2.997980 TGACTTTTGGAGTTGTGCAGA 58.002 42.857 0.00 0.00 39.19 4.26
3536 14808 3.316029 TCATGACTTTTGGAGTTGTGCAG 59.684 43.478 0.00 0.00 39.19 4.41
3537 14809 3.286353 TCATGACTTTTGGAGTTGTGCA 58.714 40.909 0.00 0.00 39.19 4.57
3538 14810 3.988379 TCATGACTTTTGGAGTTGTGC 57.012 42.857 0.00 0.00 39.19 4.57
3539 14811 5.008911 TGTGATCATGACTTTTGGAGTTGTG 59.991 40.000 0.00 0.00 39.19 3.33
3540 14812 5.132502 TGTGATCATGACTTTTGGAGTTGT 58.867 37.500 0.00 0.00 39.19 3.32
3541 14813 5.694231 TGTGATCATGACTTTTGGAGTTG 57.306 39.130 0.00 0.00 39.19 3.16
3555 14827 5.544650 TGATACAATCTCGCATGTGATCAT 58.455 37.500 9.87 2.26 34.21 2.45
3556 14828 4.947645 TGATACAATCTCGCATGTGATCA 58.052 39.130 9.87 5.91 0.00 2.92
3557 14829 5.636543 TGATGATACAATCTCGCATGTGATC 59.363 40.000 9.87 3.17 0.00 2.92
3558 14830 5.544650 TGATGATACAATCTCGCATGTGAT 58.455 37.500 9.87 0.91 0.00 3.06
3559 14831 4.947645 TGATGATACAATCTCGCATGTGA 58.052 39.130 8.98 8.98 0.00 3.58
3560 14832 5.178809 ACATGATGATACAATCTCGCATGTG 59.821 40.000 0.00 0.00 40.64 3.21
3561 14833 5.303165 ACATGATGATACAATCTCGCATGT 58.697 37.500 0.00 0.00 39.12 3.21
3562 14834 5.857822 ACATGATGATACAATCTCGCATG 57.142 39.130 0.00 0.00 38.02 4.06
3563 14835 7.967890 TTAACATGATGATACAATCTCGCAT 57.032 32.000 0.00 0.00 0.00 4.73
3564 14836 7.967890 ATTAACATGATGATACAATCTCGCA 57.032 32.000 0.00 0.00 0.00 5.10
3565 14837 9.911980 CATATTAACATGATGATACAATCTCGC 57.088 33.333 0.00 0.00 0.00 5.03
3576 14848 9.061252 ACCATATCCTCCATATTAACATGATGA 57.939 33.333 0.00 0.00 0.00 2.92
3577 14849 9.334947 GACCATATCCTCCATATTAACATGATG 57.665 37.037 0.00 0.00 0.00 3.07
3578 14850 9.289049 AGACCATATCCTCCATATTAACATGAT 57.711 33.333 0.00 0.00 0.00 2.45
3579 14851 8.685257 AGACCATATCCTCCATATTAACATGA 57.315 34.615 0.00 0.00 0.00 3.07
3582 14854 9.560860 ACATAGACCATATCCTCCATATTAACA 57.439 33.333 0.00 0.00 0.00 2.41
3583 14855 9.823647 CACATAGACCATATCCTCCATATTAAC 57.176 37.037 0.00 0.00 0.00 2.01
3584 14856 8.992349 CCACATAGACCATATCCTCCATATTAA 58.008 37.037 0.00 0.00 0.00 1.40
3585 14857 8.129001 ACCACATAGACCATATCCTCCATATTA 58.871 37.037 0.00 0.00 0.00 0.98
3586 14858 6.968248 ACCACATAGACCATATCCTCCATATT 59.032 38.462 0.00 0.00 0.00 1.28
3587 14859 6.515779 ACCACATAGACCATATCCTCCATAT 58.484 40.000 0.00 0.00 0.00 1.78
3588 14860 5.915628 ACCACATAGACCATATCCTCCATA 58.084 41.667 0.00 0.00 0.00 2.74
3589 14861 4.767908 ACCACATAGACCATATCCTCCAT 58.232 43.478 0.00 0.00 0.00 3.41
3590 14862 4.160329 GACCACATAGACCATATCCTCCA 58.840 47.826 0.00 0.00 0.00 3.86
3591 14863 3.193691 CGACCACATAGACCATATCCTCC 59.806 52.174 0.00 0.00 0.00 4.30
3592 14864 3.193691 CCGACCACATAGACCATATCCTC 59.806 52.174 0.00 0.00 0.00 3.71
3593 14865 3.165875 CCGACCACATAGACCATATCCT 58.834 50.000 0.00 0.00 0.00 3.24
3594 14866 3.162666 TCCGACCACATAGACCATATCC 58.837 50.000 0.00 0.00 0.00 2.59
3595 14867 5.407407 AATCCGACCACATAGACCATATC 57.593 43.478 0.00 0.00 0.00 1.63
3596 14868 5.306937 TCAAATCCGACCACATAGACCATAT 59.693 40.000 0.00 0.00 0.00 1.78
3597 14869 4.651962 TCAAATCCGACCACATAGACCATA 59.348 41.667 0.00 0.00 0.00 2.74
3598 14870 3.454447 TCAAATCCGACCACATAGACCAT 59.546 43.478 0.00 0.00 0.00 3.55
3599 14871 2.835156 TCAAATCCGACCACATAGACCA 59.165 45.455 0.00 0.00 0.00 4.02
3600 14872 3.118738 AGTCAAATCCGACCACATAGACC 60.119 47.826 0.00 0.00 36.52 3.85
3601 14873 4.113354 GAGTCAAATCCGACCACATAGAC 58.887 47.826 0.00 0.00 36.52 2.59
3602 14874 3.767131 TGAGTCAAATCCGACCACATAGA 59.233 43.478 0.00 0.00 36.52 1.98
3603 14875 3.865745 GTGAGTCAAATCCGACCACATAG 59.134 47.826 0.00 0.00 37.20 2.23
3604 14876 3.674955 CGTGAGTCAAATCCGACCACATA 60.675 47.826 0.00 0.00 37.13 2.29
3605 14877 2.699954 GTGAGTCAAATCCGACCACAT 58.300 47.619 0.00 0.00 37.20 3.21
3606 14878 1.604438 CGTGAGTCAAATCCGACCACA 60.604 52.381 0.00 0.00 37.13 4.17
3607 14879 1.068474 CGTGAGTCAAATCCGACCAC 58.932 55.000 0.00 0.00 36.52 4.16
3608 14880 0.037697 CCGTGAGTCAAATCCGACCA 60.038 55.000 0.00 0.00 36.52 4.02
3609 14881 0.037605 ACCGTGAGTCAAATCCGACC 60.038 55.000 0.00 0.00 36.52 4.79
3610 14882 2.642139 TACCGTGAGTCAAATCCGAC 57.358 50.000 0.00 0.00 36.08 4.79
3611 14883 3.581755 CTTTACCGTGAGTCAAATCCGA 58.418 45.455 0.00 0.00 0.00 4.55
3612 14884 2.093783 GCTTTACCGTGAGTCAAATCCG 59.906 50.000 0.00 0.00 0.00 4.18
3613 14885 3.125316 CAGCTTTACCGTGAGTCAAATCC 59.875 47.826 0.00 0.00 0.00 3.01
3614 14886 3.746492 ACAGCTTTACCGTGAGTCAAATC 59.254 43.478 0.00 0.00 0.00 2.17
3615 14887 3.740115 ACAGCTTTACCGTGAGTCAAAT 58.260 40.909 0.00 0.00 0.00 2.32
3616 14888 3.128349 GACAGCTTTACCGTGAGTCAAA 58.872 45.455 0.00 0.00 0.00 2.69
3617 14889 2.547218 GGACAGCTTTACCGTGAGTCAA 60.547 50.000 0.00 0.00 0.00 3.18
3618 14890 1.000506 GGACAGCTTTACCGTGAGTCA 59.999 52.381 0.00 0.00 0.00 3.41
3619 14891 1.672145 GGGACAGCTTTACCGTGAGTC 60.672 57.143 0.00 0.00 0.00 3.36
3620 14892 0.320697 GGGACAGCTTTACCGTGAGT 59.679 55.000 0.00 0.00 0.00 3.41
3621 14893 0.320374 TGGGACAGCTTTACCGTGAG 59.680 55.000 0.00 0.00 0.00 3.51
3622 14894 0.034337 GTGGGACAGCTTTACCGTGA 59.966 55.000 0.00 0.00 41.80 4.35
3623 14895 2.540145 GTGGGACAGCTTTACCGTG 58.460 57.895 0.00 0.00 41.80 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.