Multiple sequence alignment - TraesCS4D01G350800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G350800 chr4D 100.000 3282 0 0 1 3282 502763014 502759733 0.000000e+00 6061
1 TraesCS4D01G350800 chr4D 93.114 334 18 5 2248 2579 117425319 117424989 4.920000e-133 484
2 TraesCS4D01G350800 chr4B 88.164 1394 142 20 816 2192 647665247 647663860 0.000000e+00 1639
3 TraesCS4D01G350800 chr4B 92.393 815 52 5 1 811 647666112 647665304 0.000000e+00 1153
4 TraesCS4D01G350800 chr4B 88.260 707 54 9 2579 3282 647650710 647650030 0.000000e+00 819
5 TraesCS4D01G350800 chr5A 86.708 1136 132 14 870 1990 687281811 687280680 0.000000e+00 1243
6 TraesCS4D01G350800 chr5A 92.883 815 53 3 1 811 687282707 687281894 0.000000e+00 1179
7 TraesCS4D01G350800 chr5A 88.842 708 60 8 2578 3282 687280122 687279431 0.000000e+00 852
8 TraesCS4D01G350800 chr7D 96.605 324 9 2 2252 2574 334857838 334858160 1.340000e-148 536
9 TraesCS4D01G350800 chr7D 96.508 315 9 2 2264 2577 239380538 239380225 1.350000e-143 520
10 TraesCS4D01G350800 chr7D 95.873 315 11 2 2264 2577 238998821 238998508 2.920000e-140 508
11 TraesCS4D01G350800 chr6B 95.468 331 11 3 2248 2577 692029777 692030104 2.900000e-145 525
12 TraesCS4D01G350800 chr6B 78.551 704 136 12 2575 3275 42599221 42598530 1.800000e-122 449
13 TraesCS4D01G350800 chr6B 71.488 719 185 18 993 1701 708730907 708730199 1.210000e-39 174
14 TraesCS4D01G350800 chr2B 96.541 318 7 3 2255 2571 391762094 391762408 1.040000e-144 523
15 TraesCS4D01G350800 chr2B 94.207 328 15 3 2253 2579 767474443 767474119 6.320000e-137 497
16 TraesCS4D01G350800 chr5B 95.181 332 13 3 2248 2578 381187391 381187720 3.750000e-144 521
17 TraesCS4D01G350800 chr4A 93.051 331 18 5 2248 2576 458238302 458238629 2.290000e-131 479
18 TraesCS4D01G350800 chr7A 77.947 789 155 16 998 1775 195831717 195830937 2.960000e-130 475
19 TraesCS4D01G350800 chrUn 77.471 435 94 4 967 1399 76213275 76213707 1.170000e-64 257
20 TraesCS4D01G350800 chrUn 77.471 435 94 4 967 1399 300460176 300460608 1.170000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G350800 chr4D 502759733 502763014 3281 True 6061.000000 6061 100.000000 1 3282 1 chr4D.!!$R2 3281
1 TraesCS4D01G350800 chr4B 647663860 647666112 2252 True 1396.000000 1639 90.278500 1 2192 2 chr4B.!!$R2 2191
2 TraesCS4D01G350800 chr4B 647650030 647650710 680 True 819.000000 819 88.260000 2579 3282 1 chr4B.!!$R1 703
3 TraesCS4D01G350800 chr5A 687279431 687282707 3276 True 1091.333333 1243 89.477667 1 3282 3 chr5A.!!$R1 3281
4 TraesCS4D01G350800 chr6B 42598530 42599221 691 True 449.000000 449 78.551000 2575 3275 1 chr6B.!!$R1 700
5 TraesCS4D01G350800 chr7A 195830937 195831717 780 True 475.000000 475 77.947000 998 1775 1 chr7A.!!$R1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 457 0.779997 ACTGGGAAGCAACTGGGAAT 59.220 50.0 0.0 0.0 0.0 3.01 F
1581 1639 0.821711 TTGGAGGTCTGGGCAAAACG 60.822 55.0 0.0 0.0 0.0 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 2670 0.035056 CCGAACTGATGGAAAGGGCT 60.035 55.0 0.00 0.00 0.00 5.19 R
2467 2857 0.032815 TCTCACATGTGACGCGGAAA 59.967 50.0 24.56 1.83 35.46 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.256383 CAGCAAGGGTGTCATTTCATGAA 59.744 43.478 3.38 3.38 41.69 2.57
77 78 5.112686 TGAATGAAAACAAAACCTTTCCGG 58.887 37.500 0.00 0.00 39.35 5.14
91 95 3.997021 CCTTTCCGGTCTACATATGCATC 59.003 47.826 0.19 0.00 0.00 3.91
98 102 4.944317 CGGTCTACATATGCATCCTCTCTA 59.056 45.833 0.19 0.00 0.00 2.43
108 112 9.451002 CATATGCATCCTCTCTAATGAGATTTT 57.549 33.333 0.19 0.00 46.93 1.82
126 130 6.385033 AGATTTTGAAGCTCTTTCGGAAATG 58.615 36.000 3.24 1.90 38.71 2.32
144 148 4.325028 AATGTTGAAACAATGCAGAGCA 57.675 36.364 0.00 0.00 43.03 4.26
184 188 7.682628 TCTATGATCTATGGAAATGTGCATGA 58.317 34.615 0.00 0.00 36.34 3.07
189 193 3.598019 ATGGAAATGTGCATGACCAAC 57.402 42.857 0.00 0.00 33.98 3.77
217 221 2.492881 CTGGCTTGCACATGGAAATGTA 59.507 45.455 0.00 0.00 32.74 2.29
317 321 2.226269 GCCTCGCTAACATTAGGCG 58.774 57.895 0.00 0.00 44.63 5.52
393 397 1.132643 GCGTGAACGTAGAGGTGATCT 59.867 52.381 4.59 0.00 42.22 2.75
412 416 6.647481 GTGATCTAGTCTCGATTAGTAGCTCA 59.353 42.308 10.16 10.16 0.00 4.26
416 420 5.899120 AGTCTCGATTAGTAGCTCACAAA 57.101 39.130 0.00 0.00 0.00 2.83
424 429 7.117812 TCGATTAGTAGCTCACAAAGAAAAAGG 59.882 37.037 0.00 0.00 0.00 3.11
438 443 8.638873 ACAAAGAAAAAGGAAGTATAAACTGGG 58.361 33.333 0.00 0.00 35.62 4.45
452 457 0.779997 ACTGGGAAGCAACTGGGAAT 59.220 50.000 0.00 0.00 0.00 3.01
477 482 3.833070 ACTCTGTAGGGTAAGTTCAGTGG 59.167 47.826 0.00 0.00 0.00 4.00
586 591 1.227674 CAGAGGGCCGGTATCTTGC 60.228 63.158 1.90 0.00 0.00 4.01
653 658 5.529791 CAATTCAATGCCATCTTCTCCATC 58.470 41.667 0.00 0.00 0.00 3.51
655 660 4.239428 TCAATGCCATCTTCTCCATCAA 57.761 40.909 0.00 0.00 0.00 2.57
722 727 2.125106 CTAGTGAACCAGCCGGCC 60.125 66.667 26.15 7.94 34.57 6.13
756 761 2.659428 GCTTTGGCCATGGAATAGTCT 58.341 47.619 18.40 0.00 0.00 3.24
757 762 2.360165 GCTTTGGCCATGGAATAGTCTG 59.640 50.000 18.40 0.00 0.00 3.51
767 772 1.404181 GGAATAGTCTGAGCACACGCA 60.404 52.381 0.00 0.00 42.27 5.24
811 816 2.226437 TCGCCAAACTCAAGCTCATTTC 59.774 45.455 0.00 0.00 0.00 2.17
812 817 2.030893 CGCCAAACTCAAGCTCATTTCA 60.031 45.455 0.00 0.00 0.00 2.69
813 818 3.572584 GCCAAACTCAAGCTCATTTCAG 58.427 45.455 0.00 0.00 0.00 3.02
814 819 3.254166 GCCAAACTCAAGCTCATTTCAGA 59.746 43.478 0.00 0.00 0.00 3.27
826 883 7.655236 AGCTCATTTCAGATATCTTCATTCG 57.345 36.000 1.33 0.00 0.00 3.34
846 903 2.421619 GCTCTGGTTATCATGCTAGCC 58.578 52.381 13.29 2.73 0.00 3.93
848 905 3.558746 GCTCTGGTTATCATGCTAGCCAT 60.559 47.826 13.29 4.21 32.38 4.40
869 926 2.293677 TCTATCGGCATCTCGGAAGTTC 59.706 50.000 0.00 0.00 0.00 3.01
873 930 1.535015 CGGCATCTCGGAAGTTCTCTC 60.535 57.143 2.25 0.00 0.00 3.20
878 935 3.606595 TCTCGGAAGTTCTCTCGAGTA 57.393 47.619 21.60 11.30 41.63 2.59
882 939 2.096174 CGGAAGTTCTCTCGAGTACCAG 59.904 54.545 13.13 2.11 30.20 4.00
911 968 6.993308 GGGTCATCTAGGAAGAAAACTATTCC 59.007 42.308 0.00 0.00 44.49 3.01
924 981 5.485209 AAACTATTCCGAAGTTCTGACCT 57.515 39.130 0.56 0.00 36.17 3.85
928 985 5.657302 ACTATTCCGAAGTTCTGACCTATGT 59.343 40.000 0.56 0.00 0.00 2.29
940 997 6.187727 TCTGACCTATGTAATTCCCATTCC 57.812 41.667 0.00 0.00 0.00 3.01
959 1016 2.736144 CGCAGGAGTACAGTTAACCA 57.264 50.000 0.88 0.00 0.00 3.67
961 1018 2.230508 CGCAGGAGTACAGTTAACCAGA 59.769 50.000 0.88 0.00 0.00 3.86
974 1031 4.783227 AGTTAACCAGAGGCCAAGATAAGA 59.217 41.667 5.01 0.00 0.00 2.10
978 1035 3.135530 ACCAGAGGCCAAGATAAGATGTC 59.864 47.826 5.01 0.00 0.00 3.06
981 1038 3.135530 AGAGGCCAAGATAAGATGTCCAC 59.864 47.826 5.01 0.00 0.00 4.02
990 1047 7.202038 CCAAGATAAGATGTCCACCAAGAGATA 60.202 40.741 0.00 0.00 0.00 1.98
1010 1067 5.367937 AGATAGCTGGAATAATGGTGAGTGT 59.632 40.000 0.00 0.00 0.00 3.55
1045 1102 5.531287 GTGATGAACTCTTTGTTGGGTAAGT 59.469 40.000 0.00 0.00 39.30 2.24
1096 1153 1.335051 GGCTGAAGAACCTGCGAAAAC 60.335 52.381 0.00 0.00 32.66 2.43
1103 1160 2.354821 AGAACCTGCGAAAACAAGTGAC 59.645 45.455 0.00 0.00 0.00 3.67
1106 1163 1.332904 CCTGCGAAAACAAGTGACGTC 60.333 52.381 9.11 9.11 0.00 4.34
1192 1249 4.911390 AGATTCACAAACTAAGAGGTGGG 58.089 43.478 0.00 0.00 32.29 4.61
1209 1266 1.075896 GGGAGACTCGGTGAGGGAT 60.076 63.158 0.00 0.00 33.35 3.85
1213 1270 2.489255 GGAGACTCGGTGAGGGATATGA 60.489 54.545 0.00 0.00 33.35 2.15
1357 1414 4.724399 TGCTGGACAAATTGAAGAGGTAA 58.276 39.130 0.00 0.00 0.00 2.85
1401 1459 4.801891 GTGAACGTCACAGAAGGTATACA 58.198 43.478 5.01 0.00 46.22 2.29
1419 1477 1.684983 ACACTTCGTATACCCCCATCG 59.315 52.381 0.00 0.00 0.00 3.84
1513 1571 2.610433 CAGCGAATGAGCTTGTCAGTA 58.390 47.619 0.00 0.00 46.80 2.74
1581 1639 0.821711 TTGGAGGTCTGGGCAAAACG 60.822 55.000 0.00 0.00 0.00 3.60
1635 1696 2.170166 GGGGAATTTGACACTCATGCA 58.830 47.619 0.00 0.00 0.00 3.96
1644 1705 2.212652 GACACTCATGCACTTGTGACA 58.787 47.619 17.83 3.02 34.81 3.58
1670 1731 5.241506 TGTCTCAAAAGCCTAACATTCCAAG 59.758 40.000 0.00 0.00 0.00 3.61
1682 1743 4.916041 ACATTCCAAGACTTCTCCATGA 57.084 40.909 0.00 0.00 0.00 3.07
1717 1778 5.939764 ACTTGGCACAGAGACATCTATTA 57.060 39.130 0.00 0.00 42.39 0.98
1733 1794 5.386958 TCTATTAACACTTGCGAGTCACT 57.613 39.130 2.72 0.00 32.54 3.41
1742 1803 2.561733 TGCGAGTCACTTCTTATCGG 57.438 50.000 0.00 0.00 34.11 4.18
1776 1837 7.455008 AGAGAACATCTCCAAACTAAGAGGTAA 59.545 37.037 3.82 0.00 44.42 2.85
1785 1846 8.672823 TCCAAACTAAGAGGTAAAAGTTCTTC 57.327 34.615 0.00 0.00 33.51 2.87
1786 1847 8.491958 TCCAAACTAAGAGGTAAAAGTTCTTCT 58.508 33.333 0.00 0.00 33.51 2.85
1787 1848 8.560374 CCAAACTAAGAGGTAAAAGTTCTTCTG 58.440 37.037 0.00 0.00 33.51 3.02
1789 1850 9.682465 AAACTAAGAGGTAAAAGTTCTTCTGTT 57.318 29.630 0.00 0.00 33.39 3.16
1790 1851 9.682465 AACTAAGAGGTAAAAGTTCTTCTGTTT 57.318 29.630 0.00 0.00 33.51 2.83
1791 1852 9.110502 ACTAAGAGGTAAAAGTTCTTCTGTTTG 57.889 33.333 0.00 0.00 33.51 2.93
1854 1941 9.283768 TGCATAATTCAGTCTAAAGAAGAAACA 57.716 29.630 0.00 0.00 35.47 2.83
1855 1942 9.766277 GCATAATTCAGTCTAAAGAAGAAACAG 57.234 33.333 1.66 0.00 35.47 3.16
1863 1950 8.962111 CAGTCTAAAGAAGAAACAGAAATTTGC 58.038 33.333 0.00 0.00 35.47 3.68
1864 1951 8.907885 AGTCTAAAGAAGAAACAGAAATTTGCT 58.092 29.630 0.00 0.00 35.47 3.91
1865 1952 8.962111 GTCTAAAGAAGAAACAGAAATTTGCTG 58.038 33.333 2.62 2.62 35.47 4.41
1867 1954 7.529880 AAAGAAGAAACAGAAATTTGCTGTG 57.470 32.000 10.86 5.02 45.27 3.66
1868 1955 5.045872 AGAAGAAACAGAAATTTGCTGTGC 58.954 37.500 10.86 6.66 45.27 4.57
1869 1956 4.389890 AGAAACAGAAATTTGCTGTGCA 57.610 36.364 10.86 0.00 45.27 4.57
1885 1972 2.105649 TGTGCAAGTACAACATGGGAGA 59.894 45.455 0.00 0.00 0.00 3.71
1886 1973 3.244875 TGTGCAAGTACAACATGGGAGAT 60.245 43.478 0.00 0.00 0.00 2.75
1896 1983 7.880195 AGTACAACATGGGAGATAATCATTAGC 59.120 37.037 0.00 0.00 0.00 3.09
1910 1997 6.910536 AATCATTAGCTGACCTAAGAAACG 57.089 37.500 0.00 0.00 39.29 3.60
1915 2002 3.211045 AGCTGACCTAAGAAACGCAAAA 58.789 40.909 0.00 0.00 0.00 2.44
1917 2004 4.278419 AGCTGACCTAAGAAACGCAAAAAT 59.722 37.500 0.00 0.00 0.00 1.82
1918 2005 5.472137 AGCTGACCTAAGAAACGCAAAAATA 59.528 36.000 0.00 0.00 0.00 1.40
1922 2009 8.928270 TGACCTAAGAAACGCAAAAATAAAAA 57.072 26.923 0.00 0.00 0.00 1.94
1923 2010 9.535878 TGACCTAAGAAACGCAAAAATAAAAAT 57.464 25.926 0.00 0.00 0.00 1.82
2010 2399 7.739498 TTTAGTCAGTTCCCACATTTCTTAC 57.261 36.000 0.00 0.00 0.00 2.34
2018 2407 3.150767 CCCACATTTCTTACGGGTGAAA 58.849 45.455 0.00 0.00 36.74 2.69
2059 2448 8.889849 AAACGTGTTAAATAATTTCCATCTCG 57.110 30.769 0.00 0.00 0.00 4.04
2075 2464 9.645059 TTTCCATCTCGAGATATTATGATGTTC 57.355 33.333 26.87 0.00 32.63 3.18
2079 2468 6.925211 TCTCGAGATATTATGATGTTCCCAC 58.075 40.000 12.08 0.00 0.00 4.61
2093 2482 6.549364 TGATGTTCCCACAAATTTACTTCACT 59.451 34.615 0.00 0.00 36.16 3.41
2096 2485 7.708998 TGTTCCCACAAATTTACTTCACTAAC 58.291 34.615 0.00 0.00 0.00 2.34
2099 2488 8.472007 TCCCACAAATTTACTTCACTAACAAT 57.528 30.769 0.00 0.00 0.00 2.71
2104 2493 9.410556 ACAAATTTACTTCACTAACAATCATGC 57.589 29.630 0.00 0.00 0.00 4.06
2109 2498 9.502091 TTTACTTCACTAACAATCATGCTAAGT 57.498 29.630 0.00 0.00 0.00 2.24
2111 2500 7.161404 ACTTCACTAACAATCATGCTAAGTGA 58.839 34.615 0.00 0.00 39.30 3.41
2113 2502 7.601073 TCACTAACAATCATGCTAAGTGAAG 57.399 36.000 0.00 0.94 38.68 3.02
2115 2504 7.877612 TCACTAACAATCATGCTAAGTGAAGAA 59.122 33.333 0.00 0.00 38.68 2.52
2117 2506 9.066892 ACTAACAATCATGCTAAGTGAAGAAAA 57.933 29.630 0.00 0.00 0.00 2.29
2246 2636 9.643693 AATTATGTTGAATGTTTCACAGATTCC 57.356 29.630 0.00 0.00 39.87 3.01
2249 2639 5.827267 TGTTGAATGTTTCACAGATTCCTGA 59.173 36.000 0.00 0.00 43.32 3.86
2250 2640 6.491062 TGTTGAATGTTTCACAGATTCCTGAT 59.509 34.615 0.00 0.00 43.32 2.90
2251 2641 7.014518 TGTTGAATGTTTCACAGATTCCTGATT 59.985 33.333 0.00 0.00 43.32 2.57
2252 2642 8.514594 GTTGAATGTTTCACAGATTCCTGATTA 58.485 33.333 0.00 0.00 43.32 1.75
2253 2643 8.812513 TGAATGTTTCACAGATTCCTGATTAT 57.187 30.769 0.00 0.00 43.32 1.28
2254 2644 9.246670 TGAATGTTTCACAGATTCCTGATTATT 57.753 29.630 0.00 0.00 43.32 1.40
2255 2645 9.512435 GAATGTTTCACAGATTCCTGATTATTG 57.488 33.333 0.00 0.00 43.02 1.90
2256 2646 8.585471 ATGTTTCACAGATTCCTGATTATTGT 57.415 30.769 0.00 0.00 43.02 2.71
2257 2647 8.408043 TGTTTCACAGATTCCTGATTATTGTT 57.592 30.769 0.00 0.00 43.02 2.83
2258 2648 8.298854 TGTTTCACAGATTCCTGATTATTGTTG 58.701 33.333 0.00 0.00 43.02 3.33
2259 2649 8.514594 GTTTCACAGATTCCTGATTATTGTTGA 58.485 33.333 0.00 0.00 43.02 3.18
2260 2650 8.634335 TTCACAGATTCCTGATTATTGTTGAA 57.366 30.769 0.00 0.00 43.02 2.69
2261 2651 8.272545 TCACAGATTCCTGATTATTGTTGAAG 57.727 34.615 0.00 0.00 43.02 3.02
2262 2652 7.884877 TCACAGATTCCTGATTATTGTTGAAGT 59.115 33.333 0.00 0.00 43.02 3.01
2263 2653 7.966753 CACAGATTCCTGATTATTGTTGAAGTG 59.033 37.037 0.00 0.00 43.02 3.16
2264 2654 7.667219 ACAGATTCCTGATTATTGTTGAAGTGT 59.333 33.333 0.00 0.00 43.02 3.55
2265 2655 9.166173 CAGATTCCTGATTATTGTTGAAGTGTA 57.834 33.333 0.00 0.00 43.02 2.90
2266 2656 9.911788 AGATTCCTGATTATTGTTGAAGTGTAT 57.088 29.630 0.00 0.00 0.00 2.29
2273 2663 9.898152 TGATTATTGTTGAAGTGTATATGTGGA 57.102 29.630 0.00 0.00 0.00 4.02
2277 2667 6.435430 TGTTGAAGTGTATATGTGGATTGC 57.565 37.500 0.00 0.00 0.00 3.56
2278 2668 5.356751 TGTTGAAGTGTATATGTGGATTGCC 59.643 40.000 0.00 0.00 0.00 4.52
2279 2669 5.372343 TGAAGTGTATATGTGGATTGCCT 57.628 39.130 0.00 0.00 34.31 4.75
2280 2670 6.493189 TGAAGTGTATATGTGGATTGCCTA 57.507 37.500 0.00 0.00 34.31 3.93
2281 2671 6.524734 TGAAGTGTATATGTGGATTGCCTAG 58.475 40.000 0.00 0.00 34.31 3.02
2282 2672 4.899502 AGTGTATATGTGGATTGCCTAGC 58.100 43.478 0.00 0.00 34.31 3.42
2283 2673 4.003648 GTGTATATGTGGATTGCCTAGCC 58.996 47.826 0.00 0.00 34.31 3.93
2284 2674 2.887151 ATATGTGGATTGCCTAGCCC 57.113 50.000 0.00 0.00 34.31 5.19
2285 2675 1.819753 TATGTGGATTGCCTAGCCCT 58.180 50.000 0.00 0.00 34.31 5.19
2286 2676 0.929244 ATGTGGATTGCCTAGCCCTT 59.071 50.000 0.00 0.00 34.31 3.95
2287 2677 0.704076 TGTGGATTGCCTAGCCCTTT 59.296 50.000 0.00 0.00 34.31 3.11
2288 2678 1.340991 TGTGGATTGCCTAGCCCTTTC 60.341 52.381 0.00 0.00 34.31 2.62
2289 2679 0.258774 TGGATTGCCTAGCCCTTTCC 59.741 55.000 0.00 0.00 34.31 3.13
2290 2680 0.258774 GGATTGCCTAGCCCTTTCCA 59.741 55.000 0.00 0.00 0.00 3.53
2291 2681 1.133356 GGATTGCCTAGCCCTTTCCAT 60.133 52.381 0.00 0.00 0.00 3.41
2292 2682 2.234143 GATTGCCTAGCCCTTTCCATC 58.766 52.381 0.00 0.00 0.00 3.51
2293 2683 0.998928 TTGCCTAGCCCTTTCCATCA 59.001 50.000 0.00 0.00 0.00 3.07
2294 2684 0.548031 TGCCTAGCCCTTTCCATCAG 59.452 55.000 0.00 0.00 0.00 2.90
2295 2685 0.548510 GCCTAGCCCTTTCCATCAGT 59.451 55.000 0.00 0.00 0.00 3.41
2296 2686 1.064389 GCCTAGCCCTTTCCATCAGTT 60.064 52.381 0.00 0.00 0.00 3.16
2297 2687 2.924421 CCTAGCCCTTTCCATCAGTTC 58.076 52.381 0.00 0.00 0.00 3.01
2298 2688 2.555199 CTAGCCCTTTCCATCAGTTCG 58.445 52.381 0.00 0.00 0.00 3.95
2299 2689 0.035056 AGCCCTTTCCATCAGTTCGG 60.035 55.000 0.00 0.00 0.00 4.30
2300 2690 0.035439 GCCCTTTCCATCAGTTCGGA 60.035 55.000 0.00 0.00 0.00 4.55
2301 2691 1.739067 CCCTTTCCATCAGTTCGGAC 58.261 55.000 0.00 0.00 0.00 4.79
2302 2692 1.279271 CCCTTTCCATCAGTTCGGACT 59.721 52.381 0.00 0.00 36.25 3.85
2303 2693 2.290323 CCCTTTCCATCAGTTCGGACTT 60.290 50.000 0.00 0.00 32.54 3.01
2304 2694 3.412386 CCTTTCCATCAGTTCGGACTTT 58.588 45.455 0.00 0.00 32.54 2.66
2305 2695 3.821033 CCTTTCCATCAGTTCGGACTTTT 59.179 43.478 0.00 0.00 32.54 2.27
2306 2696 4.320494 CCTTTCCATCAGTTCGGACTTTTG 60.320 45.833 0.00 0.00 32.54 2.44
2307 2697 2.778299 TCCATCAGTTCGGACTTTTGG 58.222 47.619 13.60 13.60 36.98 3.28
2308 2698 2.105821 TCCATCAGTTCGGACTTTTGGT 59.894 45.455 17.54 0.00 36.97 3.67
2309 2699 2.884639 CCATCAGTTCGGACTTTTGGTT 59.115 45.455 12.08 0.00 33.55 3.67
2310 2700 3.304659 CCATCAGTTCGGACTTTTGGTTG 60.305 47.826 12.08 0.00 33.55 3.77
2311 2701 1.673920 TCAGTTCGGACTTTTGGTTGC 59.326 47.619 0.00 0.00 32.54 4.17
2312 2702 0.661020 AGTTCGGACTTTTGGTTGCG 59.339 50.000 0.00 0.00 29.87 4.85
2313 2703 0.379316 GTTCGGACTTTTGGTTGCGT 59.621 50.000 0.00 0.00 0.00 5.24
2314 2704 1.096416 TTCGGACTTTTGGTTGCGTT 58.904 45.000 0.00 0.00 0.00 4.84
2315 2705 0.378962 TCGGACTTTTGGTTGCGTTG 59.621 50.000 0.00 0.00 0.00 4.10
2316 2706 0.593773 CGGACTTTTGGTTGCGTTGG 60.594 55.000 0.00 0.00 0.00 3.77
2317 2707 0.874175 GGACTTTTGGTTGCGTTGGC 60.874 55.000 0.00 0.00 40.52 4.52
2318 2708 0.102300 GACTTTTGGTTGCGTTGGCT 59.898 50.000 0.00 0.00 40.82 4.75
2319 2709 1.335496 GACTTTTGGTTGCGTTGGCTA 59.665 47.619 0.00 0.00 40.82 3.93
2320 2710 1.336755 ACTTTTGGTTGCGTTGGCTAG 59.663 47.619 0.00 0.00 40.82 3.42
2321 2711 1.336755 CTTTTGGTTGCGTTGGCTAGT 59.663 47.619 0.00 0.00 40.82 2.57
2322 2712 0.665835 TTTGGTTGCGTTGGCTAGTG 59.334 50.000 0.00 0.00 40.82 2.74
2323 2713 1.791103 TTGGTTGCGTTGGCTAGTGC 61.791 55.000 0.00 0.00 40.82 4.40
2324 2714 2.258013 GGTTGCGTTGGCTAGTGCA 61.258 57.895 0.00 0.00 41.91 4.57
2325 2715 1.586154 GGTTGCGTTGGCTAGTGCAT 61.586 55.000 0.00 0.00 41.91 3.96
2326 2716 0.454957 GTTGCGTTGGCTAGTGCATG 60.455 55.000 0.00 0.00 41.91 4.06
2327 2717 0.605050 TTGCGTTGGCTAGTGCATGA 60.605 50.000 0.00 0.00 41.91 3.07
2328 2718 0.605050 TGCGTTGGCTAGTGCATGAA 60.605 50.000 0.00 0.00 41.91 2.57
2329 2719 0.097674 GCGTTGGCTAGTGCATGAAG 59.902 55.000 0.00 0.00 41.91 3.02
2330 2720 0.097674 CGTTGGCTAGTGCATGAAGC 59.902 55.000 0.00 8.84 45.96 3.86
2331 2721 1.457346 GTTGGCTAGTGCATGAAGCT 58.543 50.000 14.92 0.00 45.94 3.74
2332 2722 1.815003 GTTGGCTAGTGCATGAAGCTT 59.185 47.619 14.92 0.00 45.94 3.74
2333 2723 3.009723 GTTGGCTAGTGCATGAAGCTTA 58.990 45.455 14.92 5.14 45.94 3.09
2334 2724 3.348647 TGGCTAGTGCATGAAGCTTAA 57.651 42.857 14.92 0.00 45.94 1.85
2335 2725 3.009723 TGGCTAGTGCATGAAGCTTAAC 58.990 45.455 14.92 0.00 45.94 2.01
2336 2726 3.009723 GGCTAGTGCATGAAGCTTAACA 58.990 45.455 14.92 0.00 45.94 2.41
2337 2727 3.629398 GGCTAGTGCATGAAGCTTAACAT 59.371 43.478 14.92 0.00 45.94 2.71
2338 2728 4.497006 GGCTAGTGCATGAAGCTTAACATG 60.497 45.833 19.04 19.04 45.94 3.21
2339 2729 4.497006 GCTAGTGCATGAAGCTTAACATGG 60.497 45.833 22.64 11.36 45.94 3.66
2340 2730 3.424703 AGTGCATGAAGCTTAACATGGT 58.575 40.909 22.64 0.00 45.94 3.55
2341 2731 4.588899 AGTGCATGAAGCTTAACATGGTA 58.411 39.130 22.64 0.00 45.94 3.25
2342 2732 5.195940 AGTGCATGAAGCTTAACATGGTAT 58.804 37.500 22.64 0.00 45.94 2.73
2343 2733 5.297776 AGTGCATGAAGCTTAACATGGTATC 59.702 40.000 22.64 11.22 45.94 2.24
2344 2734 5.066375 GTGCATGAAGCTTAACATGGTATCA 59.934 40.000 22.64 13.05 45.94 2.15
2345 2735 5.297527 TGCATGAAGCTTAACATGGTATCAG 59.702 40.000 22.64 3.67 45.94 2.90
2346 2736 5.528690 GCATGAAGCTTAACATGGTATCAGA 59.471 40.000 22.64 0.00 42.53 3.27
2347 2737 6.293298 GCATGAAGCTTAACATGGTATCAGAG 60.293 42.308 22.64 3.88 42.53 3.35
2348 2738 5.118990 TGAAGCTTAACATGGTATCAGAGC 58.881 41.667 0.00 4.31 0.00 4.09
2349 2739 5.104776 TGAAGCTTAACATGGTATCAGAGCT 60.105 40.000 8.58 8.58 40.64 4.09
2350 2740 6.098266 TGAAGCTTAACATGGTATCAGAGCTA 59.902 38.462 13.71 0.00 38.19 3.32
2351 2741 6.485830 AGCTTAACATGGTATCAGAGCTAA 57.514 37.500 12.07 0.00 37.45 3.09
2352 2742 6.520272 AGCTTAACATGGTATCAGAGCTAAG 58.480 40.000 12.07 0.00 37.45 2.18
2353 2743 5.698545 GCTTAACATGGTATCAGAGCTAAGG 59.301 44.000 5.14 0.00 0.00 2.69
2354 2744 6.686632 GCTTAACATGGTATCAGAGCTAAGGT 60.687 42.308 5.14 0.00 0.00 3.50
2355 2745 4.946478 ACATGGTATCAGAGCTAAGGTC 57.054 45.455 0.00 0.00 0.00 3.85
2356 2746 4.551671 ACATGGTATCAGAGCTAAGGTCT 58.448 43.478 0.00 0.00 41.33 3.85
2357 2747 4.965532 ACATGGTATCAGAGCTAAGGTCTT 59.034 41.667 0.00 0.00 38.40 3.01
2358 2748 5.163364 ACATGGTATCAGAGCTAAGGTCTTG 60.163 44.000 0.00 0.00 38.40 3.02
2359 2749 4.610333 TGGTATCAGAGCTAAGGTCTTGA 58.390 43.478 0.00 0.00 38.40 3.02
2360 2750 4.646945 TGGTATCAGAGCTAAGGTCTTGAG 59.353 45.833 0.00 0.00 38.40 3.02
2361 2751 4.647399 GGTATCAGAGCTAAGGTCTTGAGT 59.353 45.833 0.00 0.00 38.40 3.41
2362 2752 5.128008 GGTATCAGAGCTAAGGTCTTGAGTT 59.872 44.000 0.00 0.00 38.40 3.01
2363 2753 4.792521 TCAGAGCTAAGGTCTTGAGTTC 57.207 45.455 0.00 0.00 38.40 3.01
2364 2754 4.152647 TCAGAGCTAAGGTCTTGAGTTCA 58.847 43.478 0.00 0.00 38.40 3.18
2365 2755 4.588951 TCAGAGCTAAGGTCTTGAGTTCAA 59.411 41.667 0.00 0.00 38.40 2.69
2374 2764 2.557920 CTTGAGTTCAAGTCCTGGCT 57.442 50.000 12.61 0.00 46.11 4.75
2375 2765 2.856222 CTTGAGTTCAAGTCCTGGCTT 58.144 47.619 12.61 0.00 46.11 4.35
2376 2766 3.217626 CTTGAGTTCAAGTCCTGGCTTT 58.782 45.455 12.61 0.00 46.11 3.51
2377 2767 2.575532 TGAGTTCAAGTCCTGGCTTTG 58.424 47.619 1.37 2.90 0.00 2.77
2378 2768 1.882623 GAGTTCAAGTCCTGGCTTTGG 59.117 52.381 9.22 0.00 0.00 3.28
2379 2769 0.315251 GTTCAAGTCCTGGCTTTGGC 59.685 55.000 9.22 0.00 37.82 4.52
2380 2770 0.106268 TTCAAGTCCTGGCTTTGGCA 60.106 50.000 9.22 0.00 40.87 4.92
2381 2771 0.106268 TCAAGTCCTGGCTTTGGCAA 60.106 50.000 0.00 0.00 37.73 4.52
2382 2772 0.971386 CAAGTCCTGGCTTTGGCAAT 59.029 50.000 0.00 0.00 37.73 3.56
2383 2773 1.345415 CAAGTCCTGGCTTTGGCAATT 59.655 47.619 0.00 0.00 37.73 2.32
2384 2774 1.720781 AGTCCTGGCTTTGGCAATTT 58.279 45.000 0.00 0.00 37.73 1.82
2385 2775 2.888212 AGTCCTGGCTTTGGCAATTTA 58.112 42.857 0.00 0.00 37.73 1.40
2386 2776 3.444029 AGTCCTGGCTTTGGCAATTTAT 58.556 40.909 0.00 0.00 37.73 1.40
2387 2777 3.840078 AGTCCTGGCTTTGGCAATTTATT 59.160 39.130 0.00 0.00 37.73 1.40
2388 2778 4.286808 AGTCCTGGCTTTGGCAATTTATTT 59.713 37.500 0.00 0.00 37.73 1.40
2389 2779 5.483583 AGTCCTGGCTTTGGCAATTTATTTA 59.516 36.000 0.00 0.00 37.73 1.40
2390 2780 6.013812 AGTCCTGGCTTTGGCAATTTATTTAA 60.014 34.615 0.00 0.00 37.73 1.52
2391 2781 6.652900 GTCCTGGCTTTGGCAATTTATTTAAA 59.347 34.615 0.00 0.00 37.73 1.52
2392 2782 7.174080 GTCCTGGCTTTGGCAATTTATTTAAAA 59.826 33.333 0.00 0.00 37.73 1.52
2393 2783 7.721399 TCCTGGCTTTGGCAATTTATTTAAAAA 59.279 29.630 0.00 0.00 37.73 1.94
2394 2784 8.522003 CCTGGCTTTGGCAATTTATTTAAAAAT 58.478 29.630 0.00 0.00 37.73 1.82
2395 2785 9.911138 CTGGCTTTGGCAATTTATTTAAAAATT 57.089 25.926 0.00 0.00 39.14 1.82
2404 2794 8.384526 CAATTTATTTAAAAATTGCTGCTGCC 57.615 30.769 13.47 0.00 45.02 4.85
2405 2795 7.684937 ATTTATTTAAAAATTGCTGCTGCCA 57.315 28.000 13.47 1.91 38.71 4.92
2406 2796 6.479095 TTATTTAAAAATTGCTGCTGCCAC 57.521 33.333 13.47 0.00 38.71 5.01
2407 2797 2.453983 TAAAAATTGCTGCTGCCACC 57.546 45.000 13.47 0.00 38.71 4.61
2408 2798 0.250424 AAAAATTGCTGCTGCCACCC 60.250 50.000 13.47 0.00 38.71 4.61
2409 2799 2.115734 AAAATTGCTGCTGCCACCCC 62.116 55.000 13.47 0.00 38.71 4.95
2410 2800 3.534704 AATTGCTGCTGCCACCCCT 62.535 57.895 13.47 0.00 38.71 4.79
2411 2801 3.534704 ATTGCTGCTGCCACCCCTT 62.535 57.895 13.47 0.00 38.71 3.95
2412 2802 3.754586 TTGCTGCTGCCACCCCTTT 62.755 57.895 13.47 0.00 38.71 3.11
2413 2803 3.688159 GCTGCTGCCACCCCTTTG 61.688 66.667 3.85 0.00 0.00 2.77
2414 2804 2.203538 CTGCTGCCACCCCTTTGT 60.204 61.111 0.00 0.00 0.00 2.83
2415 2805 2.521465 TGCTGCCACCCCTTTGTG 60.521 61.111 0.00 0.00 35.98 3.33
2416 2806 2.521708 GCTGCCACCCCTTTGTGT 60.522 61.111 0.00 0.00 34.35 3.72
2417 2807 2.564721 GCTGCCACCCCTTTGTGTC 61.565 63.158 0.00 0.00 34.35 3.67
2418 2808 1.903404 CTGCCACCCCTTTGTGTCC 60.903 63.158 0.00 0.00 34.35 4.02
2419 2809 2.197324 GCCACCCCTTTGTGTCCA 59.803 61.111 0.00 0.00 34.35 4.02
2420 2810 2.200337 GCCACCCCTTTGTGTCCAC 61.200 63.158 0.00 0.00 34.35 4.02
2421 2811 1.896660 CCACCCCTTTGTGTCCACG 60.897 63.158 0.00 0.00 34.35 4.94
2422 2812 1.153046 CACCCCTTTGTGTCCACGT 60.153 57.895 0.00 0.00 0.00 4.49
2423 2813 0.107081 CACCCCTTTGTGTCCACGTA 59.893 55.000 0.00 0.00 0.00 3.57
2424 2814 1.061546 ACCCCTTTGTGTCCACGTAT 58.938 50.000 0.00 0.00 0.00 3.06
2425 2815 1.271163 ACCCCTTTGTGTCCACGTATG 60.271 52.381 0.00 0.00 0.00 2.39
2426 2816 1.002659 CCCCTTTGTGTCCACGTATGA 59.997 52.381 0.00 0.00 0.00 2.15
2427 2817 2.346803 CCCTTTGTGTCCACGTATGAG 58.653 52.381 0.00 0.00 0.00 2.90
2428 2818 1.732259 CCTTTGTGTCCACGTATGAGC 59.268 52.381 0.00 0.00 0.00 4.26
2429 2819 1.732259 CTTTGTGTCCACGTATGAGCC 59.268 52.381 0.00 0.00 0.00 4.70
2430 2820 0.973632 TTGTGTCCACGTATGAGCCT 59.026 50.000 0.00 0.00 0.00 4.58
2431 2821 0.530744 TGTGTCCACGTATGAGCCTC 59.469 55.000 0.00 0.00 0.00 4.70
2432 2822 0.818296 GTGTCCACGTATGAGCCTCT 59.182 55.000 0.00 0.00 0.00 3.69
2433 2823 1.204941 GTGTCCACGTATGAGCCTCTT 59.795 52.381 0.00 0.00 0.00 2.85
2434 2824 2.426024 GTGTCCACGTATGAGCCTCTTA 59.574 50.000 0.00 0.00 0.00 2.10
2435 2825 3.093814 TGTCCACGTATGAGCCTCTTAA 58.906 45.455 0.00 0.00 0.00 1.85
2436 2826 3.130516 TGTCCACGTATGAGCCTCTTAAG 59.869 47.826 0.00 0.00 0.00 1.85
2437 2827 2.100916 TCCACGTATGAGCCTCTTAAGC 59.899 50.000 0.00 0.00 0.00 3.09
2438 2828 2.474816 CACGTATGAGCCTCTTAAGCC 58.525 52.381 0.00 0.00 0.00 4.35
2439 2829 2.108168 ACGTATGAGCCTCTTAAGCCA 58.892 47.619 0.00 0.00 0.00 4.75
2440 2830 2.700897 ACGTATGAGCCTCTTAAGCCAT 59.299 45.455 0.00 0.00 0.00 4.40
2441 2831 3.895656 ACGTATGAGCCTCTTAAGCCATA 59.104 43.478 0.00 0.00 0.00 2.74
2442 2832 4.238514 CGTATGAGCCTCTTAAGCCATAC 58.761 47.826 0.00 8.91 39.00 2.39
2443 2833 3.778954 ATGAGCCTCTTAAGCCATACC 57.221 47.619 0.00 0.00 0.00 2.73
2444 2834 2.764269 TGAGCCTCTTAAGCCATACCT 58.236 47.619 0.00 0.00 0.00 3.08
2445 2835 2.700897 TGAGCCTCTTAAGCCATACCTC 59.299 50.000 0.00 0.00 0.00 3.85
2446 2836 2.969262 GAGCCTCTTAAGCCATACCTCT 59.031 50.000 0.00 0.00 0.00 3.69
2447 2837 2.703007 AGCCTCTTAAGCCATACCTCTG 59.297 50.000 0.00 0.00 0.00 3.35
2448 2838 2.700897 GCCTCTTAAGCCATACCTCTGA 59.299 50.000 0.00 0.00 0.00 3.27
2449 2839 3.244044 GCCTCTTAAGCCATACCTCTGAG 60.244 52.174 0.00 0.00 0.00 3.35
2450 2840 3.964031 CCTCTTAAGCCATACCTCTGAGT 59.036 47.826 3.66 0.00 0.00 3.41
2451 2841 4.038642 CCTCTTAAGCCATACCTCTGAGTC 59.961 50.000 3.66 0.00 0.00 3.36
2452 2842 4.873010 TCTTAAGCCATACCTCTGAGTCT 58.127 43.478 3.66 0.00 0.00 3.24
2453 2843 6.014771 TCTTAAGCCATACCTCTGAGTCTA 57.985 41.667 3.66 0.00 0.00 2.59
2454 2844 6.615617 TCTTAAGCCATACCTCTGAGTCTAT 58.384 40.000 3.66 0.00 0.00 1.98
2455 2845 6.717540 TCTTAAGCCATACCTCTGAGTCTATC 59.282 42.308 3.66 0.00 0.00 2.08
2456 2846 3.773560 AGCCATACCTCTGAGTCTATCC 58.226 50.000 3.66 0.00 0.00 2.59
2457 2847 3.141083 AGCCATACCTCTGAGTCTATCCA 59.859 47.826 3.66 0.00 0.00 3.41
2458 2848 3.257127 GCCATACCTCTGAGTCTATCCAC 59.743 52.174 3.66 0.00 0.00 4.02
2459 2849 4.474394 CCATACCTCTGAGTCTATCCACA 58.526 47.826 3.66 0.00 0.00 4.17
2460 2850 5.083122 CCATACCTCTGAGTCTATCCACAT 58.917 45.833 3.66 0.00 0.00 3.21
2461 2851 5.047448 CCATACCTCTGAGTCTATCCACATG 60.047 48.000 3.66 0.00 0.00 3.21
2462 2852 3.987745 ACCTCTGAGTCTATCCACATGT 58.012 45.455 3.66 0.00 0.00 3.21
2463 2853 4.357325 ACCTCTGAGTCTATCCACATGTT 58.643 43.478 0.00 0.00 0.00 2.71
2464 2854 4.161189 ACCTCTGAGTCTATCCACATGTTG 59.839 45.833 0.00 0.00 0.00 3.33
2465 2855 4.403752 CCTCTGAGTCTATCCACATGTTGA 59.596 45.833 1.57 1.57 0.00 3.18
2466 2856 5.330455 TCTGAGTCTATCCACATGTTGAC 57.670 43.478 1.02 3.64 0.00 3.18
2467 2857 5.019470 TCTGAGTCTATCCACATGTTGACT 58.981 41.667 1.02 8.08 37.46 3.41
2468 2858 5.481824 TCTGAGTCTATCCACATGTTGACTT 59.518 40.000 1.02 0.00 35.29 3.01
2469 2859 6.014242 TCTGAGTCTATCCACATGTTGACTTT 60.014 38.462 1.02 0.00 35.29 2.66
2470 2860 6.166279 TGAGTCTATCCACATGTTGACTTTC 58.834 40.000 1.02 0.00 35.29 2.62
2471 2861 5.491982 AGTCTATCCACATGTTGACTTTCC 58.508 41.667 1.02 0.00 31.71 3.13
2472 2862 4.330074 GTCTATCCACATGTTGACTTTCCG 59.670 45.833 1.02 0.00 0.00 4.30
2473 2863 1.234821 TCCACATGTTGACTTTCCGC 58.765 50.000 0.00 0.00 0.00 5.54
2474 2864 0.110238 CCACATGTTGACTTTCCGCG 60.110 55.000 0.00 0.00 0.00 6.46
2475 2865 0.586319 CACATGTTGACTTTCCGCGT 59.414 50.000 4.92 0.00 0.00 6.01
2476 2866 0.865769 ACATGTTGACTTTCCGCGTC 59.134 50.000 4.92 0.00 0.00 5.19
2477 2867 0.865111 CATGTTGACTTTCCGCGTCA 59.135 50.000 4.92 0.00 39.45 4.35
2478 2868 0.865769 ATGTTGACTTTCCGCGTCAC 59.134 50.000 4.92 0.00 40.78 3.67
2479 2869 0.460459 TGTTGACTTTCCGCGTCACA 60.460 50.000 4.92 0.50 40.78 3.58
2480 2870 0.865769 GTTGACTTTCCGCGTCACAT 59.134 50.000 4.92 0.00 40.78 3.21
2481 2871 0.865111 TTGACTTTCCGCGTCACATG 59.135 50.000 4.92 0.00 40.78 3.21
2482 2872 0.249699 TGACTTTCCGCGTCACATGT 60.250 50.000 4.92 0.00 36.54 3.21
2483 2873 0.163788 GACTTTCCGCGTCACATGTG 59.836 55.000 20.18 20.18 0.00 3.21
2484 2874 0.249699 ACTTTCCGCGTCACATGTGA 60.250 50.000 24.56 24.56 37.24 3.58
2485 2875 0.439985 CTTTCCGCGTCACATGTGAG 59.560 55.000 28.54 21.36 40.75 3.51
2486 2876 0.032815 TTTCCGCGTCACATGTGAGA 59.967 50.000 28.54 18.70 40.75 3.27
2487 2877 0.388520 TTCCGCGTCACATGTGAGAG 60.389 55.000 28.54 24.07 40.75 3.20
2488 2878 1.807165 CCGCGTCACATGTGAGAGG 60.807 63.158 28.54 25.15 40.75 3.69
2489 2879 1.807165 CGCGTCACATGTGAGAGGG 60.807 63.158 28.54 25.77 40.75 4.30
2490 2880 1.448540 GCGTCACATGTGAGAGGGG 60.449 63.158 28.54 15.62 40.75 4.79
2491 2881 1.975327 CGTCACATGTGAGAGGGGT 59.025 57.895 28.54 0.00 40.75 4.95
2492 2882 0.390340 CGTCACATGTGAGAGGGGTG 60.390 60.000 28.54 8.96 40.75 4.61
2493 2883 0.687354 GTCACATGTGAGAGGGGTGT 59.313 55.000 28.54 0.00 40.75 4.16
2494 2884 1.072331 GTCACATGTGAGAGGGGTGTT 59.928 52.381 28.54 0.00 40.75 3.32
2495 2885 1.072173 TCACATGTGAGAGGGGTGTTG 59.928 52.381 24.56 0.00 34.14 3.33
2496 2886 1.072173 CACATGTGAGAGGGGTGTTGA 59.928 52.381 21.64 0.00 0.00 3.18
2497 2887 1.774254 ACATGTGAGAGGGGTGTTGAA 59.226 47.619 0.00 0.00 0.00 2.69
2498 2888 2.224621 ACATGTGAGAGGGGTGTTGAAG 60.225 50.000 0.00 0.00 0.00 3.02
2499 2889 1.507140 TGTGAGAGGGGTGTTGAAGT 58.493 50.000 0.00 0.00 0.00 3.01
2500 2890 1.140852 TGTGAGAGGGGTGTTGAAGTG 59.859 52.381 0.00 0.00 0.00 3.16
2501 2891 1.141053 GTGAGAGGGGTGTTGAAGTGT 59.859 52.381 0.00 0.00 0.00 3.55
2502 2892 2.367567 GTGAGAGGGGTGTTGAAGTGTA 59.632 50.000 0.00 0.00 0.00 2.90
2503 2893 3.008049 GTGAGAGGGGTGTTGAAGTGTAT 59.992 47.826 0.00 0.00 0.00 2.29
2504 2894 4.222145 GTGAGAGGGGTGTTGAAGTGTATA 59.778 45.833 0.00 0.00 0.00 1.47
2505 2895 5.030147 TGAGAGGGGTGTTGAAGTGTATAT 58.970 41.667 0.00 0.00 0.00 0.86
2506 2896 5.104941 TGAGAGGGGTGTTGAAGTGTATATG 60.105 44.000 0.00 0.00 0.00 1.78
2507 2897 4.783227 AGAGGGGTGTTGAAGTGTATATGT 59.217 41.667 0.00 0.00 0.00 2.29
2508 2898 4.843728 AGGGGTGTTGAAGTGTATATGTG 58.156 43.478 0.00 0.00 0.00 3.21
2509 2899 3.945285 GGGGTGTTGAAGTGTATATGTGG 59.055 47.826 0.00 0.00 0.00 4.17
2510 2900 4.323945 GGGGTGTTGAAGTGTATATGTGGA 60.324 45.833 0.00 0.00 0.00 4.02
2511 2901 5.437060 GGGTGTTGAAGTGTATATGTGGAT 58.563 41.667 0.00 0.00 0.00 3.41
2512 2902 5.885912 GGGTGTTGAAGTGTATATGTGGATT 59.114 40.000 0.00 0.00 0.00 3.01
2513 2903 6.183360 GGGTGTTGAAGTGTATATGTGGATTG 60.183 42.308 0.00 0.00 0.00 2.67
2514 2904 6.258160 GTGTTGAAGTGTATATGTGGATTGC 58.742 40.000 0.00 0.00 0.00 3.56
2515 2905 5.356751 TGTTGAAGTGTATATGTGGATTGCC 59.643 40.000 0.00 0.00 0.00 4.52
2516 2906 5.372343 TGAAGTGTATATGTGGATTGCCT 57.628 39.130 0.00 0.00 34.31 4.75
2517 2907 6.493189 TGAAGTGTATATGTGGATTGCCTA 57.507 37.500 0.00 0.00 34.31 3.93
2518 2908 6.524734 TGAAGTGTATATGTGGATTGCCTAG 58.475 40.000 0.00 0.00 34.31 3.02
2519 2909 4.899502 AGTGTATATGTGGATTGCCTAGC 58.100 43.478 0.00 0.00 34.31 3.42
2520 2910 4.003648 GTGTATATGTGGATTGCCTAGCC 58.996 47.826 0.00 0.00 34.31 3.93
2521 2911 2.887151 ATATGTGGATTGCCTAGCCC 57.113 50.000 0.00 0.00 34.31 5.19
2522 2912 1.819753 TATGTGGATTGCCTAGCCCT 58.180 50.000 0.00 0.00 34.31 5.19
2523 2913 0.929244 ATGTGGATTGCCTAGCCCTT 59.071 50.000 0.00 0.00 34.31 3.95
2524 2914 0.704076 TGTGGATTGCCTAGCCCTTT 59.296 50.000 0.00 0.00 34.31 3.11
2525 2915 1.340991 TGTGGATTGCCTAGCCCTTTC 60.341 52.381 0.00 0.00 34.31 2.62
2526 2916 0.258774 TGGATTGCCTAGCCCTTTCC 59.741 55.000 0.00 0.00 34.31 3.13
2527 2917 0.258774 GGATTGCCTAGCCCTTTCCA 59.741 55.000 0.00 0.00 0.00 3.53
2528 2918 1.133356 GGATTGCCTAGCCCTTTCCAT 60.133 52.381 0.00 0.00 0.00 3.41
2529 2919 2.234143 GATTGCCTAGCCCTTTCCATC 58.766 52.381 0.00 0.00 0.00 3.51
2530 2920 0.998928 TTGCCTAGCCCTTTCCATCA 59.001 50.000 0.00 0.00 0.00 3.07
2531 2921 0.998928 TGCCTAGCCCTTTCCATCAA 59.001 50.000 0.00 0.00 0.00 2.57
2532 2922 1.570501 TGCCTAGCCCTTTCCATCAAT 59.429 47.619 0.00 0.00 0.00 2.57
2533 2923 2.024080 TGCCTAGCCCTTTCCATCAATT 60.024 45.455 0.00 0.00 0.00 2.32
2534 2924 2.625314 GCCTAGCCCTTTCCATCAATTC 59.375 50.000 0.00 0.00 0.00 2.17
2535 2925 2.880890 CCTAGCCCTTTCCATCAATTCG 59.119 50.000 0.00 0.00 0.00 3.34
2536 2926 1.767759 AGCCCTTTCCATCAATTCGG 58.232 50.000 0.00 0.00 0.00 4.30
2537 2927 1.284785 AGCCCTTTCCATCAATTCGGA 59.715 47.619 0.00 0.00 0.00 4.55
2538 2928 1.405463 GCCCTTTCCATCAATTCGGAC 59.595 52.381 0.00 0.00 0.00 4.79
2539 2929 2.945890 GCCCTTTCCATCAATTCGGACT 60.946 50.000 0.00 0.00 0.00 3.85
2540 2930 3.356290 CCCTTTCCATCAATTCGGACTT 58.644 45.455 0.00 0.00 0.00 3.01
2541 2931 3.763897 CCCTTTCCATCAATTCGGACTTT 59.236 43.478 0.00 0.00 0.00 2.66
2542 2932 4.220602 CCCTTTCCATCAATTCGGACTTTT 59.779 41.667 0.00 0.00 0.00 2.27
2543 2933 5.163513 CCTTTCCATCAATTCGGACTTTTG 58.836 41.667 0.00 0.00 0.00 2.44
2544 2934 4.782019 TTCCATCAATTCGGACTTTTGG 57.218 40.909 0.00 2.19 0.00 3.28
2545 2935 3.761897 TCCATCAATTCGGACTTTTGGT 58.238 40.909 6.68 0.00 0.00 3.67
2546 2936 4.148838 TCCATCAATTCGGACTTTTGGTT 58.851 39.130 6.68 0.00 0.00 3.67
2547 2937 4.022416 TCCATCAATTCGGACTTTTGGTTG 60.022 41.667 6.68 0.00 0.00 3.77
2548 2938 3.363341 TCAATTCGGACTTTTGGTTGC 57.637 42.857 0.00 0.00 0.00 4.17
2549 2939 2.050691 CAATTCGGACTTTTGGTTGCG 58.949 47.619 0.00 0.00 0.00 4.85
2550 2940 1.314730 ATTCGGACTTTTGGTTGCGT 58.685 45.000 0.00 0.00 0.00 5.24
2551 2941 1.096416 TTCGGACTTTTGGTTGCGTT 58.904 45.000 0.00 0.00 0.00 4.84
2552 2942 0.378962 TCGGACTTTTGGTTGCGTTG 59.621 50.000 0.00 0.00 0.00 4.10
2553 2943 0.593773 CGGACTTTTGGTTGCGTTGG 60.594 55.000 0.00 0.00 0.00 3.77
2554 2944 0.874175 GGACTTTTGGTTGCGTTGGC 60.874 55.000 0.00 0.00 40.52 4.52
2555 2945 0.102300 GACTTTTGGTTGCGTTGGCT 59.898 50.000 0.00 0.00 40.82 4.75
2556 2946 1.335496 GACTTTTGGTTGCGTTGGCTA 59.665 47.619 0.00 0.00 40.82 3.93
2557 2947 1.336755 ACTTTTGGTTGCGTTGGCTAG 59.663 47.619 0.00 0.00 40.82 3.42
2558 2948 1.336755 CTTTTGGTTGCGTTGGCTAGT 59.663 47.619 0.00 0.00 40.82 2.57
2559 2949 0.665835 TTTGGTTGCGTTGGCTAGTG 59.334 50.000 0.00 0.00 40.82 2.74
2560 2950 1.791103 TTGGTTGCGTTGGCTAGTGC 61.791 55.000 0.00 0.00 40.82 4.40
2561 2951 2.258013 GGTTGCGTTGGCTAGTGCA 61.258 57.895 0.00 0.00 41.91 4.57
2562 2952 1.586154 GGTTGCGTTGGCTAGTGCAT 61.586 55.000 0.00 0.00 41.91 3.96
2563 2953 0.454957 GTTGCGTTGGCTAGTGCATG 60.455 55.000 0.00 0.00 41.91 4.06
2564 2954 0.605050 TTGCGTTGGCTAGTGCATGA 60.605 50.000 0.00 0.00 41.91 3.07
2565 2955 0.605050 TGCGTTGGCTAGTGCATGAA 60.605 50.000 0.00 0.00 41.91 2.57
2566 2956 0.097674 GCGTTGGCTAGTGCATGAAG 59.902 55.000 0.00 0.00 41.91 3.02
2567 2957 0.097674 CGTTGGCTAGTGCATGAAGC 59.902 55.000 0.00 8.84 45.96 3.86
2568 2958 1.457346 GTTGGCTAGTGCATGAAGCT 58.543 50.000 14.92 0.00 45.94 3.74
2569 2959 1.815003 GTTGGCTAGTGCATGAAGCTT 59.185 47.619 14.92 0.00 45.94 3.74
2570 2960 3.009723 GTTGGCTAGTGCATGAAGCTTA 58.990 45.455 14.92 5.14 45.94 3.09
2571 2961 3.348647 TGGCTAGTGCATGAAGCTTAA 57.651 42.857 14.92 0.00 45.94 1.85
2572 2962 3.009723 TGGCTAGTGCATGAAGCTTAAC 58.990 45.455 14.92 0.00 45.94 2.01
2573 2963 3.009723 GGCTAGTGCATGAAGCTTAACA 58.990 45.455 14.92 0.00 45.94 2.41
2601 2991 4.826274 ATTGATGATCTATGGGGTACGG 57.174 45.455 0.00 0.00 0.00 4.02
2603 2993 0.895530 ATGATCTATGGGGTACGGCG 59.104 55.000 4.80 4.80 0.00 6.46
2661 3051 5.759506 TGATCTTGCTAGCAGAGTAGTAC 57.240 43.478 18.45 10.82 0.00 2.73
2692 3082 8.273780 ACAAGAAATAAAGAAGTGGCTATGAG 57.726 34.615 0.00 0.00 0.00 2.90
2707 3097 3.495629 GCTATGAGATGTTGCTCCCATCA 60.496 47.826 11.56 0.00 40.93 3.07
2708 3098 3.878237 ATGAGATGTTGCTCCCATCAT 57.122 42.857 11.56 0.90 40.93 2.45
2753 3144 2.938756 GCCCTCACCAATGAAGACTCAG 60.939 54.545 0.00 0.00 34.23 3.35
2785 3176 6.945435 TGTTTTTCAGTAGGATATTTGGCTCA 59.055 34.615 0.00 0.00 0.00 4.26
2805 3196 2.446982 AAAGAAGCTTGCCCTCCCCC 62.447 60.000 2.10 0.00 0.00 5.40
2832 3223 6.092807 AGCTTAGAGATGTTTCGGTTCAAATC 59.907 38.462 0.00 0.00 0.00 2.17
2833 3224 6.128282 GCTTAGAGATGTTTCGGTTCAAATCA 60.128 38.462 0.00 0.00 0.00 2.57
2868 3259 3.063588 GCGGTTTACCTCTTGCAGTTATC 59.936 47.826 0.00 0.00 0.00 1.75
2943 3334 7.456269 TGGGAATATGTACAAAATTCTTTGGGT 59.544 33.333 23.17 0.00 45.30 4.51
2944 3335 7.979537 GGGAATATGTACAAAATTCTTTGGGTC 59.020 37.037 23.17 11.72 45.30 4.46
2947 3338 5.523438 TGTACAAAATTCTTTGGGTCCAC 57.477 39.130 0.00 0.00 45.30 4.02
2981 3372 4.038271 TGCTTGAAGTTGAAGGGATGAT 57.962 40.909 4.18 0.00 0.00 2.45
3005 3396 4.335594 GCAAATCTTAAACCTCGGCTACAT 59.664 41.667 0.00 0.00 0.00 2.29
3036 3427 5.190528 TCCTCCTTATCTGAAGACATGCTTT 59.809 40.000 0.00 0.00 36.83 3.51
3111 3502 2.121645 CCAATGGATGGCTGAAGGC 58.878 57.895 0.00 0.00 43.80 4.35
3118 3509 1.876156 GGATGGCTGAAGGCTTTATCG 59.124 52.381 0.00 0.00 41.69 2.92
3122 3513 2.210961 GGCTGAAGGCTTTATCGGTAC 58.789 52.381 0.00 0.00 41.46 3.34
3140 3531 4.437390 CGGTACAGAAAATGGACAAGATGC 60.437 45.833 0.00 0.00 45.58 3.91
3210 3601 9.968870 AGTCTTATTCAACCTATAGAATTCGAC 57.031 33.333 0.00 4.19 36.07 4.20
3240 3631 1.336440 TCGGTGACAAAATGCAAGGTG 59.664 47.619 0.00 0.00 0.00 4.00
3273 3664 8.339344 TGTTGCTTGATCTTATCTTGATGAAA 57.661 30.769 0.00 0.00 0.00 2.69
3274 3665 8.456471 TGTTGCTTGATCTTATCTTGATGAAAG 58.544 33.333 0.00 0.00 37.22 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.239449 AGGATGCATATGTAGACCGGAA 58.761 45.455 9.46 0.00 0.00 4.30
73 74 2.826128 GAGGATGCATATGTAGACCGGA 59.174 50.000 9.46 0.00 0.00 5.14
77 78 8.060931 TCATTAGAGAGGATGCATATGTAGAC 57.939 38.462 0.00 0.00 0.00 2.59
98 102 5.707298 TCCGAAAGAGCTTCAAAATCTCATT 59.293 36.000 0.00 0.00 33.17 2.57
108 112 4.133820 TCAACATTTCCGAAAGAGCTTCA 58.866 39.130 0.00 0.00 33.17 3.02
126 130 4.551410 GCTTTTGCTCTGCATTGTTTCAAC 60.551 41.667 0.00 0.00 43.35 3.18
169 173 3.167485 AGTTGGTCATGCACATTTCCAT 58.833 40.909 0.00 0.00 0.00 3.41
171 175 2.821969 AGAGTTGGTCATGCACATTTCC 59.178 45.455 0.00 0.00 0.00 3.13
184 188 1.972872 CAAGCCAGTGAAGAGTTGGT 58.027 50.000 0.00 0.00 34.43 3.67
189 193 1.199327 CATGTGCAAGCCAGTGAAGAG 59.801 52.381 0.00 0.00 0.00 2.85
217 221 3.511146 CCAACCACAGAAAATAGCCATGT 59.489 43.478 0.00 0.00 0.00 3.21
305 309 2.702592 TTCACCCCGCCTAATGTTAG 57.297 50.000 0.00 0.00 0.00 2.34
317 321 3.108376 AGTTGTCCTCTAGATTCACCCC 58.892 50.000 0.00 0.00 0.00 4.95
393 397 6.822170 TCTTTGTGAGCTACTAATCGAGACTA 59.178 38.462 0.00 0.00 0.00 2.59
412 416 8.638873 CCCAGTTTATACTTCCTTTTTCTTTGT 58.361 33.333 0.00 0.00 30.26 2.83
416 420 7.176865 GCTTCCCAGTTTATACTTCCTTTTTCT 59.823 37.037 0.00 0.00 30.26 2.52
424 429 5.123979 CCAGTTGCTTCCCAGTTTATACTTC 59.876 44.000 0.00 0.00 30.26 3.01
438 443 3.190118 CAGAGTTGATTCCCAGTTGCTTC 59.810 47.826 0.00 0.00 0.00 3.86
452 457 5.010719 CACTGAACTTACCCTACAGAGTTGA 59.989 44.000 0.00 0.00 32.85 3.18
477 482 0.689080 TCTCTCACAGGATGGGCCTC 60.689 60.000 4.53 0.00 46.97 4.70
653 658 2.586258 ATAGCTCGCACCTACTGTTG 57.414 50.000 0.00 0.00 0.00 3.33
655 660 1.409427 GGAATAGCTCGCACCTACTGT 59.591 52.381 0.00 0.00 0.00 3.55
698 703 1.202428 GGCTGGTTCACTAGTCGATCC 60.202 57.143 0.00 4.20 0.00 3.36
707 712 3.553095 GAAGGCCGGCTGGTTCACT 62.553 63.158 28.56 10.17 37.67 3.41
756 761 0.385029 AAATTTGCTGCGTGTGCTCA 59.615 45.000 0.00 0.00 43.34 4.26
757 762 1.055338 GAAATTTGCTGCGTGTGCTC 58.945 50.000 0.00 0.00 43.34 4.26
767 772 7.626452 GCGAGATTTAGTTACCTGAAATTTGCT 60.626 37.037 0.00 0.00 0.00 3.91
792 797 3.254166 TCTGAAATGAGCTTGAGTTTGGC 59.746 43.478 0.00 0.00 0.00 4.52
811 816 4.880759 ACCAGAGCGAATGAAGATATCTG 58.119 43.478 5.86 0.00 34.00 2.90
812 817 5.543507 AACCAGAGCGAATGAAGATATCT 57.456 39.130 0.00 0.00 0.00 1.98
813 818 7.093354 TGATAACCAGAGCGAATGAAGATATC 58.907 38.462 0.00 0.00 0.00 1.63
814 819 6.997655 TGATAACCAGAGCGAATGAAGATAT 58.002 36.000 0.00 0.00 0.00 1.63
826 883 2.224378 TGGCTAGCATGATAACCAGAGC 60.224 50.000 18.24 0.72 0.00 4.09
846 903 2.230025 ACTTCCGAGATGCCGATAGATG 59.770 50.000 0.00 0.00 39.76 2.90
848 905 1.982660 ACTTCCGAGATGCCGATAGA 58.017 50.000 0.00 0.00 39.76 1.98
869 926 1.340211 ACCCTCACTGGTACTCGAGAG 60.340 57.143 21.68 8.48 36.67 3.20
873 930 1.405821 GATGACCCTCACTGGTACTCG 59.594 57.143 0.00 0.00 39.24 4.18
878 935 1.646447 TCCTAGATGACCCTCACTGGT 59.354 52.381 0.00 0.00 42.79 4.00
882 939 5.046231 AGTTTTCTTCCTAGATGACCCTCAC 60.046 44.000 0.00 0.00 0.00 3.51
911 968 5.753921 GGGAATTACATAGGTCAGAACTTCG 59.246 44.000 0.00 0.00 0.00 3.79
924 981 3.392947 TCCTGCGGAATGGGAATTACATA 59.607 43.478 0.00 0.00 0.00 2.29
928 985 1.843851 ACTCCTGCGGAATGGGAATTA 59.156 47.619 0.00 0.00 0.00 1.40
940 997 2.230508 TCTGGTTAACTGTACTCCTGCG 59.769 50.000 5.42 0.00 0.00 5.18
950 1007 2.859165 TCTTGGCCTCTGGTTAACTG 57.141 50.000 3.32 0.00 0.00 3.16
959 1016 3.135530 GTGGACATCTTATCTTGGCCTCT 59.864 47.826 3.32 0.00 41.95 3.69
961 1018 2.173569 GGTGGACATCTTATCTTGGCCT 59.826 50.000 3.32 0.00 41.95 5.19
974 1031 3.834489 CAGCTATCTCTTGGTGGACAT 57.166 47.619 0.00 0.00 0.00 3.06
981 1038 5.704515 CACCATTATTCCAGCTATCTCTTGG 59.295 44.000 0.00 0.00 0.00 3.61
990 1047 4.307032 AACACTCACCATTATTCCAGCT 57.693 40.909 0.00 0.00 0.00 4.24
1010 1067 3.258372 AGAGTTCATCACGCCAGTAGAAA 59.742 43.478 0.00 0.00 0.00 2.52
1096 1153 1.990799 TCGCTAATGGACGTCACTTG 58.009 50.000 18.91 4.28 0.00 3.16
1192 1249 1.889829 CATATCCCTCACCGAGTCTCC 59.110 57.143 0.00 0.00 0.00 3.71
1209 1266 4.725490 TGTCCTCGATGTCATAGGTCATA 58.275 43.478 2.22 0.00 0.00 2.15
1213 1270 3.566351 TGATGTCCTCGATGTCATAGGT 58.434 45.455 0.93 0.00 0.00 3.08
1294 1351 0.384353 GTTTTGAGGCGTCGAACAGC 60.384 55.000 8.60 0.00 0.00 4.40
1419 1477 4.025396 CGTAGATCAATGCCAACATCACTC 60.025 45.833 0.00 0.00 34.62 3.51
1430 1488 2.478134 GCAGTGGATCGTAGATCAATGC 59.522 50.000 11.53 12.98 45.12 3.56
1513 1571 7.205515 ACTTCTTCTCCTCATCCATTAACAT 57.794 36.000 0.00 0.00 0.00 2.71
1581 1639 3.877508 GGTATACCTCATTGGCAAGTGTC 59.122 47.826 15.09 0.00 40.22 3.67
1617 1675 4.232221 CAAGTGCATGAGTGTCAAATTCC 58.768 43.478 0.00 0.00 0.00 3.01
1635 1696 3.375299 GCTTTTGAGACACTGTCACAAGT 59.625 43.478 17.88 0.00 42.09 3.16
1644 1705 4.762251 GGAATGTTAGGCTTTTGAGACACT 59.238 41.667 0.00 0.00 0.00 3.55
1670 1731 8.831550 GTTTGGATAGTAAATCATGGAGAAGTC 58.168 37.037 0.00 0.00 0.00 3.01
1717 1778 2.604046 AGAAGTGACTCGCAAGTGTT 57.396 45.000 0.00 0.00 45.24 3.32
1733 1794 2.695147 TCTCTGAGCATGCCGATAAGAA 59.305 45.455 15.66 0.02 0.00 2.52
1742 1803 2.211806 GGAGATGTTCTCTGAGCATGC 58.788 52.381 10.51 10.51 42.95 4.06
1837 1924 8.962111 GCAAATTTCTGTTTCTTCTTTAGACTG 58.038 33.333 0.00 0.00 30.90 3.51
1846 1933 4.805192 TGCACAGCAAATTTCTGTTTCTTC 59.195 37.500 15.99 7.81 42.38 2.87
1848 1935 4.389890 TGCACAGCAAATTTCTGTTTCT 57.610 36.364 15.99 0.00 42.38 2.52
1860 1947 2.034432 CCATGTTGTACTTGCACAGCAA 59.966 45.455 4.22 4.22 46.80 3.91
1861 1948 1.608109 CCATGTTGTACTTGCACAGCA 59.392 47.619 0.00 0.00 42.68 4.41
1862 1949 1.068333 CCCATGTTGTACTTGCACAGC 60.068 52.381 0.00 0.00 0.00 4.40
1863 1950 2.485426 CTCCCATGTTGTACTTGCACAG 59.515 50.000 0.00 0.00 0.00 3.66
1864 1951 2.105649 TCTCCCATGTTGTACTTGCACA 59.894 45.455 0.00 0.00 0.00 4.57
1865 1952 2.778299 TCTCCCATGTTGTACTTGCAC 58.222 47.619 0.00 0.00 0.00 4.57
1866 1953 3.719268 ATCTCCCATGTTGTACTTGCA 57.281 42.857 0.00 0.00 0.00 4.08
1867 1954 5.822519 TGATTATCTCCCATGTTGTACTTGC 59.177 40.000 0.00 0.00 0.00 4.01
1868 1955 8.455903 AATGATTATCTCCCATGTTGTACTTG 57.544 34.615 0.00 0.00 0.00 3.16
1869 1956 9.784531 CTAATGATTATCTCCCATGTTGTACTT 57.215 33.333 0.00 0.00 0.00 2.24
1870 1957 7.880195 GCTAATGATTATCTCCCATGTTGTACT 59.120 37.037 0.00 0.00 0.00 2.73
1871 1958 7.880195 AGCTAATGATTATCTCCCATGTTGTAC 59.120 37.037 0.00 0.00 0.00 2.90
1872 1959 7.879677 CAGCTAATGATTATCTCCCATGTTGTA 59.120 37.037 0.00 0.00 0.00 2.41
1873 1960 6.713903 CAGCTAATGATTATCTCCCATGTTGT 59.286 38.462 0.00 0.00 0.00 3.32
1874 1961 6.938596 TCAGCTAATGATTATCTCCCATGTTG 59.061 38.462 0.00 0.00 31.12 3.33
1885 1972 7.171678 GCGTTTCTTAGGTCAGCTAATGATTAT 59.828 37.037 0.00 0.00 40.92 1.28
1886 1973 6.479001 GCGTTTCTTAGGTCAGCTAATGATTA 59.521 38.462 0.00 0.00 40.92 1.75
1896 1983 8.568732 TTTTATTTTTGCGTTTCTTAGGTCAG 57.431 30.769 0.00 0.00 0.00 3.51
1945 2036 9.575868 TTGATAATCTGGTACAAGTTTAAACCA 57.424 29.630 14.72 4.57 38.70 3.67
1946 2037 9.836076 GTTGATAATCTGGTACAAGTTTAAACC 57.164 33.333 14.72 0.00 38.70 3.27
1982 2077 6.833933 AGAAATGTGGGAACTGACTAAAAGTT 59.166 34.615 0.00 0.00 40.54 2.66
1987 2082 5.929992 CGTAAGAAATGTGGGAACTGACTAA 59.070 40.000 0.00 0.00 43.02 2.24
1990 2085 3.435671 CCGTAAGAAATGTGGGAACTGAC 59.564 47.826 0.00 0.00 43.02 3.51
1992 2087 2.747446 CCCGTAAGAAATGTGGGAACTG 59.253 50.000 0.00 0.00 42.77 3.16
1993 2088 2.374170 ACCCGTAAGAAATGTGGGAACT 59.626 45.455 1.98 0.00 42.77 3.01
1997 2092 2.483014 TCACCCGTAAGAAATGTGGG 57.517 50.000 0.00 0.00 45.70 4.61
1999 2388 5.583495 TGTTTTTCACCCGTAAGAAATGTG 58.417 37.500 0.00 0.00 43.02 3.21
2010 2399 7.527084 TTGTTTAAGAAATGTTTTTCACCCG 57.473 32.000 1.74 0.00 43.09 5.28
2052 2441 6.983307 GGGAACATCATAATATCTCGAGATGG 59.017 42.308 33.22 18.48 37.70 3.51
2056 2445 6.691508 TGTGGGAACATCATAATATCTCGAG 58.308 40.000 5.93 5.93 46.14 4.04
2073 2462 7.883391 TGTTAGTGAAGTAAATTTGTGGGAA 57.117 32.000 0.00 0.00 0.00 3.97
2075 2464 8.356657 TGATTGTTAGTGAAGTAAATTTGTGGG 58.643 33.333 0.00 0.00 0.00 4.61
2079 2468 9.630098 AGCATGATTGTTAGTGAAGTAAATTTG 57.370 29.630 0.00 0.00 0.00 2.32
2090 2479 7.601073 TCTTCACTTAGCATGATTGTTAGTG 57.399 36.000 0.00 3.02 33.14 2.74
2237 2627 7.966753 CACTTCAACAATAATCAGGAATCTGTG 59.033 37.037 0.00 0.00 41.59 3.66
2238 2628 7.667219 ACACTTCAACAATAATCAGGAATCTGT 59.333 33.333 0.00 0.00 41.59 3.41
2251 2641 8.620416 GCAATCCACATATACACTTCAACAATA 58.380 33.333 0.00 0.00 0.00 1.90
2252 2642 7.416664 GGCAATCCACATATACACTTCAACAAT 60.417 37.037 0.00 0.00 0.00 2.71
2253 2643 6.127758 GGCAATCCACATATACACTTCAACAA 60.128 38.462 0.00 0.00 0.00 2.83
2254 2644 5.356751 GGCAATCCACATATACACTTCAACA 59.643 40.000 0.00 0.00 0.00 3.33
2255 2645 5.590259 AGGCAATCCACATATACACTTCAAC 59.410 40.000 0.00 0.00 33.74 3.18
2256 2646 5.754782 AGGCAATCCACATATACACTTCAA 58.245 37.500 0.00 0.00 33.74 2.69
2257 2647 5.372343 AGGCAATCCACATATACACTTCA 57.628 39.130 0.00 0.00 33.74 3.02
2258 2648 5.409826 GCTAGGCAATCCACATATACACTTC 59.590 44.000 0.00 0.00 33.74 3.01
2259 2649 5.308825 GCTAGGCAATCCACATATACACTT 58.691 41.667 0.00 0.00 33.74 3.16
2260 2650 4.263068 GGCTAGGCAATCCACATATACACT 60.263 45.833 12.16 0.00 33.74 3.55
2261 2651 4.003648 GGCTAGGCAATCCACATATACAC 58.996 47.826 12.16 0.00 33.74 2.90
2262 2652 3.009033 GGGCTAGGCAATCCACATATACA 59.991 47.826 19.14 0.00 33.74 2.29
2263 2653 3.264450 AGGGCTAGGCAATCCACATATAC 59.736 47.826 19.14 0.00 33.74 1.47
2264 2654 3.531059 AGGGCTAGGCAATCCACATATA 58.469 45.455 19.14 0.00 33.74 0.86
2265 2655 2.352371 AGGGCTAGGCAATCCACATAT 58.648 47.619 19.14 0.00 33.74 1.78
2266 2656 1.819753 AGGGCTAGGCAATCCACATA 58.180 50.000 19.14 0.00 33.74 2.29
2267 2657 0.929244 AAGGGCTAGGCAATCCACAT 59.071 50.000 19.14 0.00 33.74 3.21
2268 2658 0.704076 AAAGGGCTAGGCAATCCACA 59.296 50.000 19.14 0.00 33.74 4.17
2269 2659 1.393603 GAAAGGGCTAGGCAATCCAC 58.606 55.000 19.14 0.00 33.74 4.02
2270 2660 0.258774 GGAAAGGGCTAGGCAATCCA 59.741 55.000 19.14 0.00 33.74 3.41
2271 2661 0.258774 TGGAAAGGGCTAGGCAATCC 59.741 55.000 19.14 20.00 0.00 3.01
2272 2662 2.234143 GATGGAAAGGGCTAGGCAATC 58.766 52.381 19.14 11.99 0.00 2.67
2273 2663 1.570501 TGATGGAAAGGGCTAGGCAAT 59.429 47.619 19.14 2.76 0.00 3.56
2274 2664 0.998928 TGATGGAAAGGGCTAGGCAA 59.001 50.000 19.14 0.00 0.00 4.52
2275 2665 0.548031 CTGATGGAAAGGGCTAGGCA 59.452 55.000 19.14 0.00 0.00 4.75
2276 2666 0.548510 ACTGATGGAAAGGGCTAGGC 59.451 55.000 8.00 8.00 0.00 3.93
2277 2667 2.743183 CGAACTGATGGAAAGGGCTAGG 60.743 54.545 0.00 0.00 0.00 3.02
2278 2668 2.555199 CGAACTGATGGAAAGGGCTAG 58.445 52.381 0.00 0.00 0.00 3.42
2279 2669 1.209504 CCGAACTGATGGAAAGGGCTA 59.790 52.381 0.00 0.00 0.00 3.93
2280 2670 0.035056 CCGAACTGATGGAAAGGGCT 60.035 55.000 0.00 0.00 0.00 5.19
2281 2671 0.035439 TCCGAACTGATGGAAAGGGC 60.035 55.000 0.00 0.00 0.00 5.19
2282 2672 1.279271 AGTCCGAACTGATGGAAAGGG 59.721 52.381 0.00 0.00 35.67 3.95
2283 2673 2.770164 AGTCCGAACTGATGGAAAGG 57.230 50.000 0.00 0.00 35.67 3.11
2284 2674 4.320494 CCAAAAGTCCGAACTGATGGAAAG 60.320 45.833 0.36 0.00 41.39 2.62
2285 2675 3.568007 CCAAAAGTCCGAACTGATGGAAA 59.432 43.478 0.36 0.00 41.39 3.13
2286 2676 3.146066 CCAAAAGTCCGAACTGATGGAA 58.854 45.455 0.36 0.00 41.39 3.53
2287 2677 2.105821 ACCAAAAGTCCGAACTGATGGA 59.894 45.455 12.23 0.00 41.39 3.41
2288 2678 2.504367 ACCAAAAGTCCGAACTGATGG 58.496 47.619 4.80 4.80 43.11 3.51
2289 2679 3.853307 GCAACCAAAAGTCCGAACTGATG 60.853 47.826 0.00 0.00 35.36 3.07
2290 2680 2.293399 GCAACCAAAAGTCCGAACTGAT 59.707 45.455 0.00 0.00 35.36 2.90
2291 2681 1.673920 GCAACCAAAAGTCCGAACTGA 59.326 47.619 0.00 0.00 35.36 3.41
2292 2682 1.596954 CGCAACCAAAAGTCCGAACTG 60.597 52.381 0.00 0.00 35.36 3.16
2293 2683 0.661020 CGCAACCAAAAGTCCGAACT 59.339 50.000 0.00 0.00 37.32 3.01
2294 2684 0.379316 ACGCAACCAAAAGTCCGAAC 59.621 50.000 0.00 0.00 0.00 3.95
2295 2685 1.096416 AACGCAACCAAAAGTCCGAA 58.904 45.000 0.00 0.00 0.00 4.30
2296 2686 0.378962 CAACGCAACCAAAAGTCCGA 59.621 50.000 0.00 0.00 0.00 4.55
2297 2687 0.593773 CCAACGCAACCAAAAGTCCG 60.594 55.000 0.00 0.00 0.00 4.79
2298 2688 0.874175 GCCAACGCAACCAAAAGTCC 60.874 55.000 0.00 0.00 34.03 3.85
2299 2689 0.102300 AGCCAACGCAACCAAAAGTC 59.898 50.000 0.00 0.00 37.52 3.01
2300 2690 1.336755 CTAGCCAACGCAACCAAAAGT 59.663 47.619 0.00 0.00 37.52 2.66
2301 2691 1.336755 ACTAGCCAACGCAACCAAAAG 59.663 47.619 0.00 0.00 37.52 2.27
2302 2692 1.066303 CACTAGCCAACGCAACCAAAA 59.934 47.619 0.00 0.00 37.52 2.44
2303 2693 0.665835 CACTAGCCAACGCAACCAAA 59.334 50.000 0.00 0.00 37.52 3.28
2304 2694 1.791103 GCACTAGCCAACGCAACCAA 61.791 55.000 0.00 0.00 37.52 3.67
2305 2695 2.258013 GCACTAGCCAACGCAACCA 61.258 57.895 0.00 0.00 37.52 3.67
2306 2696 1.586154 ATGCACTAGCCAACGCAACC 61.586 55.000 0.00 0.00 41.13 3.77
2307 2697 0.454957 CATGCACTAGCCAACGCAAC 60.455 55.000 0.00 0.00 41.13 4.17
2308 2698 0.605050 TCATGCACTAGCCAACGCAA 60.605 50.000 0.00 0.00 41.13 4.85
2309 2699 0.605050 TTCATGCACTAGCCAACGCA 60.605 50.000 0.00 0.00 41.13 5.24
2310 2700 0.097674 CTTCATGCACTAGCCAACGC 59.902 55.000 0.00 0.00 41.13 4.84
2311 2701 0.097674 GCTTCATGCACTAGCCAACG 59.902 55.000 5.46 0.00 42.31 4.10
2312 2702 1.457346 AGCTTCATGCACTAGCCAAC 58.543 50.000 11.63 0.00 45.94 3.77
2313 2703 2.205022 AAGCTTCATGCACTAGCCAA 57.795 45.000 11.63 0.00 45.94 4.52
2314 2704 3.009723 GTTAAGCTTCATGCACTAGCCA 58.990 45.455 0.00 0.00 45.94 4.75
2315 2705 3.009723 TGTTAAGCTTCATGCACTAGCC 58.990 45.455 0.00 0.11 45.94 3.93
2316 2706 4.497006 CCATGTTAAGCTTCATGCACTAGC 60.497 45.833 18.30 8.13 45.94 3.42
2317 2707 4.637534 ACCATGTTAAGCTTCATGCACTAG 59.362 41.667 18.30 9.81 45.94 2.57
2318 2708 4.588899 ACCATGTTAAGCTTCATGCACTA 58.411 39.130 18.30 0.00 45.94 2.74
2319 2709 3.424703 ACCATGTTAAGCTTCATGCACT 58.575 40.909 18.30 4.73 45.94 4.40
2320 2710 3.855689 ACCATGTTAAGCTTCATGCAC 57.144 42.857 18.30 4.70 45.94 4.57
2321 2711 5.192176 TGATACCATGTTAAGCTTCATGCA 58.808 37.500 18.30 10.61 45.94 3.96
2322 2712 5.528690 TCTGATACCATGTTAAGCTTCATGC 59.471 40.000 18.30 8.69 39.74 4.06
2323 2713 6.293298 GCTCTGATACCATGTTAAGCTTCATG 60.293 42.308 17.24 17.24 40.46 3.07
2324 2714 5.762218 GCTCTGATACCATGTTAAGCTTCAT 59.238 40.000 0.00 0.00 0.00 2.57
2325 2715 5.104776 AGCTCTGATACCATGTTAAGCTTCA 60.105 40.000 0.00 0.00 35.42 3.02
2326 2716 5.363939 AGCTCTGATACCATGTTAAGCTTC 58.636 41.667 0.00 0.00 35.42 3.86
2327 2717 5.365021 AGCTCTGATACCATGTTAAGCTT 57.635 39.130 3.48 3.48 35.42 3.74
2328 2718 6.463614 CCTTAGCTCTGATACCATGTTAAGCT 60.464 42.308 0.00 0.66 41.41 3.74
2329 2719 5.698545 CCTTAGCTCTGATACCATGTTAAGC 59.301 44.000 0.00 0.00 0.00 3.09
2330 2720 6.821388 ACCTTAGCTCTGATACCATGTTAAG 58.179 40.000 0.00 0.00 0.00 1.85
2331 2721 6.611642 AGACCTTAGCTCTGATACCATGTTAA 59.388 38.462 0.00 0.00 0.00 2.01
2332 2722 6.136857 AGACCTTAGCTCTGATACCATGTTA 58.863 40.000 0.00 0.00 0.00 2.41
2333 2723 4.965532 AGACCTTAGCTCTGATACCATGTT 59.034 41.667 0.00 0.00 0.00 2.71
2334 2724 4.551671 AGACCTTAGCTCTGATACCATGT 58.448 43.478 0.00 0.00 0.00 3.21
2335 2725 5.069648 TCAAGACCTTAGCTCTGATACCATG 59.930 44.000 0.00 0.00 0.00 3.66
2336 2726 5.211973 TCAAGACCTTAGCTCTGATACCAT 58.788 41.667 0.00 0.00 0.00 3.55
2337 2727 4.610333 TCAAGACCTTAGCTCTGATACCA 58.390 43.478 0.00 0.00 0.00 3.25
2338 2728 4.647399 ACTCAAGACCTTAGCTCTGATACC 59.353 45.833 0.00 0.00 0.00 2.73
2339 2729 5.845391 ACTCAAGACCTTAGCTCTGATAC 57.155 43.478 0.00 0.00 0.00 2.24
2340 2730 5.952347 TGAACTCAAGACCTTAGCTCTGATA 59.048 40.000 0.00 0.00 0.00 2.15
2341 2731 4.774726 TGAACTCAAGACCTTAGCTCTGAT 59.225 41.667 0.00 0.00 0.00 2.90
2342 2732 4.152647 TGAACTCAAGACCTTAGCTCTGA 58.847 43.478 0.00 0.00 0.00 3.27
2343 2733 4.527509 TGAACTCAAGACCTTAGCTCTG 57.472 45.455 0.00 0.00 0.00 3.35
2356 2746 2.951642 CAAAGCCAGGACTTGAACTCAA 59.048 45.455 0.00 0.00 0.00 3.02
2357 2747 2.575532 CAAAGCCAGGACTTGAACTCA 58.424 47.619 0.00 0.00 0.00 3.41
2358 2748 1.882623 CCAAAGCCAGGACTTGAACTC 59.117 52.381 0.00 0.00 0.00 3.01
2359 2749 1.986882 CCAAAGCCAGGACTTGAACT 58.013 50.000 0.00 0.00 0.00 3.01
2360 2750 0.315251 GCCAAAGCCAGGACTTGAAC 59.685 55.000 0.00 0.00 0.00 3.18
2361 2751 0.106268 TGCCAAAGCCAGGACTTGAA 60.106 50.000 0.00 0.00 38.69 2.69
2362 2752 0.106268 TTGCCAAAGCCAGGACTTGA 60.106 50.000 0.00 0.00 38.69 3.02
2363 2753 0.971386 ATTGCCAAAGCCAGGACTTG 59.029 50.000 0.00 0.00 38.69 3.16
2364 2754 1.720781 AATTGCCAAAGCCAGGACTT 58.279 45.000 0.00 0.00 38.69 3.01
2365 2755 1.720781 AAATTGCCAAAGCCAGGACT 58.279 45.000 0.00 0.00 38.69 3.85
2366 2756 3.893326 ATAAATTGCCAAAGCCAGGAC 57.107 42.857 0.00 0.00 38.69 3.85
2367 2757 4.906747 AAATAAATTGCCAAAGCCAGGA 57.093 36.364 0.00 0.00 38.69 3.86
2368 2758 7.446001 TTTTAAATAAATTGCCAAAGCCAGG 57.554 32.000 0.00 0.00 38.69 4.45
2369 2759 9.911138 AATTTTTAAATAAATTGCCAAAGCCAG 57.089 25.926 0.00 0.00 36.60 4.85
2370 2760 9.688592 CAATTTTTAAATAAATTGCCAAAGCCA 57.311 25.926 10.78 0.00 44.08 4.75
2380 2770 8.022550 GTGGCAGCAGCAATTTTTAAATAAATT 58.977 29.630 2.65 0.00 44.61 1.82
2381 2771 7.361971 GGTGGCAGCAGCAATTTTTAAATAAAT 60.362 33.333 12.58 0.00 44.61 1.40
2382 2772 6.072783 GGTGGCAGCAGCAATTTTTAAATAAA 60.073 34.615 12.58 0.00 44.61 1.40
2383 2773 5.411053 GGTGGCAGCAGCAATTTTTAAATAA 59.589 36.000 12.58 0.00 44.61 1.40
2384 2774 4.934602 GGTGGCAGCAGCAATTTTTAAATA 59.065 37.500 12.58 0.00 44.61 1.40
2385 2775 3.752747 GGTGGCAGCAGCAATTTTTAAAT 59.247 39.130 12.58 0.00 44.61 1.40
2386 2776 3.137533 GGTGGCAGCAGCAATTTTTAAA 58.862 40.909 12.58 0.00 44.61 1.52
2387 2777 2.549778 GGGTGGCAGCAGCAATTTTTAA 60.550 45.455 19.48 0.00 44.61 1.52
2388 2778 1.001860 GGGTGGCAGCAGCAATTTTTA 59.998 47.619 19.48 0.00 44.61 1.52
2389 2779 0.250424 GGGTGGCAGCAGCAATTTTT 60.250 50.000 19.48 0.00 44.61 1.94
2390 2780 1.372307 GGGTGGCAGCAGCAATTTT 59.628 52.632 19.48 0.00 44.61 1.82
2391 2781 2.586293 GGGGTGGCAGCAGCAATTT 61.586 57.895 19.48 0.00 44.61 1.82
2392 2782 2.999063 GGGGTGGCAGCAGCAATT 60.999 61.111 19.48 0.00 44.61 2.32
2393 2783 3.534704 AAGGGGTGGCAGCAGCAAT 62.535 57.895 19.48 0.00 44.61 3.56
2394 2784 3.754586 AAAGGGGTGGCAGCAGCAA 62.755 57.895 19.48 0.00 44.61 3.91
2395 2785 4.223125 AAAGGGGTGGCAGCAGCA 62.223 61.111 19.48 0.00 44.61 4.41
2396 2786 3.688159 CAAAGGGGTGGCAGCAGC 61.688 66.667 19.48 1.38 41.10 5.25
2397 2787 2.203538 ACAAAGGGGTGGCAGCAG 60.204 61.111 19.48 5.03 0.00 4.24
2398 2788 2.521465 CACAAAGGGGTGGCAGCA 60.521 61.111 19.48 0.00 35.13 4.41
2399 2789 2.521708 ACACAAAGGGGTGGCAGC 60.522 61.111 8.47 8.47 43.08 5.25
2400 2790 3.763671 GACACAAAGGGGTGGCAG 58.236 61.111 0.00 0.00 46.33 4.85
2402 2792 2.197324 TGGACACAAAGGGGTGGC 59.803 61.111 0.00 0.00 46.35 5.01
2403 2793 1.896660 CGTGGACACAAAGGGGTGG 60.897 63.158 3.12 0.00 43.08 4.61
2404 2794 0.107081 TACGTGGACACAAAGGGGTG 59.893 55.000 0.00 0.00 44.35 4.61
2405 2795 1.061546 ATACGTGGACACAAAGGGGT 58.938 50.000 0.00 0.00 0.00 4.95
2406 2796 1.002659 TCATACGTGGACACAAAGGGG 59.997 52.381 0.00 0.00 0.00 4.79
2407 2797 2.346803 CTCATACGTGGACACAAAGGG 58.653 52.381 0.00 0.00 0.00 3.95
2408 2798 1.732259 GCTCATACGTGGACACAAAGG 59.268 52.381 0.00 0.00 0.00 3.11
2409 2799 1.732259 GGCTCATACGTGGACACAAAG 59.268 52.381 0.00 0.00 0.00 2.77
2410 2800 1.346395 AGGCTCATACGTGGACACAAA 59.654 47.619 0.00 0.00 0.00 2.83
2411 2801 0.973632 AGGCTCATACGTGGACACAA 59.026 50.000 0.00 0.00 0.00 3.33
2412 2802 0.530744 GAGGCTCATACGTGGACACA 59.469 55.000 10.25 0.00 0.00 3.72
2413 2803 0.818296 AGAGGCTCATACGTGGACAC 59.182 55.000 18.26 0.00 0.00 3.67
2414 2804 1.557099 AAGAGGCTCATACGTGGACA 58.443 50.000 18.26 0.00 0.00 4.02
2415 2805 3.707793 CTTAAGAGGCTCATACGTGGAC 58.292 50.000 18.26 0.00 0.00 4.02
2416 2806 2.100916 GCTTAAGAGGCTCATACGTGGA 59.899 50.000 18.26 0.00 0.00 4.02
2417 2807 2.474816 GCTTAAGAGGCTCATACGTGG 58.525 52.381 18.26 1.25 0.00 4.94
2418 2808 2.474816 GGCTTAAGAGGCTCATACGTG 58.525 52.381 18.26 3.59 44.59 4.49
2419 2809 2.892784 GGCTTAAGAGGCTCATACGT 57.107 50.000 18.26 0.00 44.59 3.57
2428 2818 3.964031 ACTCAGAGGTATGGCTTAAGAGG 59.036 47.826 6.67 0.00 0.00 3.69
2429 2819 4.892934 AGACTCAGAGGTATGGCTTAAGAG 59.107 45.833 6.67 0.00 0.00 2.85
2430 2820 4.873010 AGACTCAGAGGTATGGCTTAAGA 58.127 43.478 6.67 0.00 0.00 2.10
2431 2821 6.071616 GGATAGACTCAGAGGTATGGCTTAAG 60.072 46.154 1.53 0.00 0.00 1.85
2432 2822 5.775701 GGATAGACTCAGAGGTATGGCTTAA 59.224 44.000 1.53 0.00 0.00 1.85
2433 2823 5.162980 TGGATAGACTCAGAGGTATGGCTTA 60.163 44.000 1.53 0.00 0.00 3.09
2434 2824 4.156477 GGATAGACTCAGAGGTATGGCTT 58.844 47.826 1.53 0.00 0.00 4.35
2435 2825 3.141083 TGGATAGACTCAGAGGTATGGCT 59.859 47.826 1.53 0.00 0.00 4.75
2436 2826 3.257127 GTGGATAGACTCAGAGGTATGGC 59.743 52.174 1.53 0.00 0.00 4.40
2437 2827 4.474394 TGTGGATAGACTCAGAGGTATGG 58.526 47.826 1.53 0.00 0.00 2.74
2438 2828 5.538053 ACATGTGGATAGACTCAGAGGTATG 59.462 44.000 0.00 0.00 0.00 2.39
2439 2829 5.710646 ACATGTGGATAGACTCAGAGGTAT 58.289 41.667 0.00 0.00 0.00 2.73
2440 2830 5.130705 ACATGTGGATAGACTCAGAGGTA 57.869 43.478 0.00 0.00 0.00 3.08
2441 2831 3.987745 ACATGTGGATAGACTCAGAGGT 58.012 45.455 0.00 0.00 0.00 3.85
2442 2832 4.403752 TCAACATGTGGATAGACTCAGAGG 59.596 45.833 0.00 0.00 0.00 3.69
2443 2833 5.126869 AGTCAACATGTGGATAGACTCAGAG 59.873 44.000 6.13 0.00 31.19 3.35
2444 2834 5.019470 AGTCAACATGTGGATAGACTCAGA 58.981 41.667 6.13 0.00 31.19 3.27
2445 2835 5.336150 AGTCAACATGTGGATAGACTCAG 57.664 43.478 6.13 0.00 31.19 3.35
2446 2836 5.745312 AAGTCAACATGTGGATAGACTCA 57.255 39.130 6.13 0.00 35.47 3.41
2447 2837 5.582665 GGAAAGTCAACATGTGGATAGACTC 59.417 44.000 6.13 0.00 35.47 3.36
2448 2838 5.491982 GGAAAGTCAACATGTGGATAGACT 58.508 41.667 6.13 8.91 37.90 3.24
2449 2839 4.330074 CGGAAAGTCAACATGTGGATAGAC 59.670 45.833 6.13 6.84 0.00 2.59
2450 2840 4.503910 CGGAAAGTCAACATGTGGATAGA 58.496 43.478 6.13 0.00 0.00 1.98
2451 2841 3.063997 GCGGAAAGTCAACATGTGGATAG 59.936 47.826 6.13 0.00 0.00 2.08
2452 2842 3.006940 GCGGAAAGTCAACATGTGGATA 58.993 45.455 6.13 0.00 0.00 2.59
2453 2843 1.812571 GCGGAAAGTCAACATGTGGAT 59.187 47.619 6.13 0.00 0.00 3.41
2454 2844 1.234821 GCGGAAAGTCAACATGTGGA 58.765 50.000 0.00 0.00 0.00 4.02
2455 2845 0.110238 CGCGGAAAGTCAACATGTGG 60.110 55.000 0.00 0.00 0.00 4.17
2456 2846 0.586319 ACGCGGAAAGTCAACATGTG 59.414 50.000 12.47 0.00 0.00 3.21
2457 2847 0.865769 GACGCGGAAAGTCAACATGT 59.134 50.000 12.47 0.00 38.42 3.21
2458 2848 0.865111 TGACGCGGAAAGTCAACATG 59.135 50.000 12.47 0.00 44.56 3.21
2459 2849 3.299050 TGACGCGGAAAGTCAACAT 57.701 47.368 12.47 0.00 44.56 2.71
2460 2850 4.838046 TGACGCGGAAAGTCAACA 57.162 50.000 12.47 0.00 44.56 3.33
2463 2853 0.249699 ACATGTGACGCGGAAAGTCA 60.250 50.000 12.47 0.61 45.23 3.41
2464 2854 0.163788 CACATGTGACGCGGAAAGTC 59.836 55.000 21.64 0.00 38.98 3.01
2465 2855 0.249699 TCACATGTGACGCGGAAAGT 60.250 50.000 24.56 0.00 34.14 2.66
2466 2856 0.439985 CTCACATGTGACGCGGAAAG 59.560 55.000 24.56 8.66 35.46 2.62
2467 2857 0.032815 TCTCACATGTGACGCGGAAA 59.967 50.000 24.56 1.83 35.46 3.13
2468 2858 0.388520 CTCTCACATGTGACGCGGAA 60.389 55.000 24.56 2.61 35.46 4.30
2469 2859 1.212751 CTCTCACATGTGACGCGGA 59.787 57.895 24.56 18.04 35.46 5.54
2470 2860 1.807165 CCTCTCACATGTGACGCGG 60.807 63.158 24.56 18.95 35.46 6.46
2471 2861 1.807165 CCCTCTCACATGTGACGCG 60.807 63.158 24.56 15.12 35.46 6.01
2472 2862 1.448540 CCCCTCTCACATGTGACGC 60.449 63.158 24.56 0.00 35.46 5.19
2473 2863 0.390340 CACCCCTCTCACATGTGACG 60.390 60.000 24.56 19.03 35.46 4.35
2474 2864 0.687354 ACACCCCTCTCACATGTGAC 59.313 55.000 24.56 0.00 35.46 3.67
2475 2865 1.072173 CAACACCCCTCTCACATGTGA 59.928 52.381 26.33 26.33 38.06 3.58
2476 2866 1.072173 TCAACACCCCTCTCACATGTG 59.928 52.381 20.18 20.18 0.00 3.21
2477 2867 1.434188 TCAACACCCCTCTCACATGT 58.566 50.000 0.00 0.00 0.00 3.21
2478 2868 2.224621 ACTTCAACACCCCTCTCACATG 60.225 50.000 0.00 0.00 0.00 3.21
2479 2869 2.057922 ACTTCAACACCCCTCTCACAT 58.942 47.619 0.00 0.00 0.00 3.21
2480 2870 1.140852 CACTTCAACACCCCTCTCACA 59.859 52.381 0.00 0.00 0.00 3.58
2481 2871 1.141053 ACACTTCAACACCCCTCTCAC 59.859 52.381 0.00 0.00 0.00 3.51
2482 2872 1.507140 ACACTTCAACACCCCTCTCA 58.493 50.000 0.00 0.00 0.00 3.27
2483 2873 3.983044 ATACACTTCAACACCCCTCTC 57.017 47.619 0.00 0.00 0.00 3.20
2484 2874 4.783227 ACATATACACTTCAACACCCCTCT 59.217 41.667 0.00 0.00 0.00 3.69
2485 2875 4.876107 CACATATACACTTCAACACCCCTC 59.124 45.833 0.00 0.00 0.00 4.30
2486 2876 4.324254 CCACATATACACTTCAACACCCCT 60.324 45.833 0.00 0.00 0.00 4.79
2487 2877 3.945285 CCACATATACACTTCAACACCCC 59.055 47.826 0.00 0.00 0.00 4.95
2488 2878 4.839121 TCCACATATACACTTCAACACCC 58.161 43.478 0.00 0.00 0.00 4.61
2489 2879 6.677920 GCAATCCACATATACACTTCAACACC 60.678 42.308 0.00 0.00 0.00 4.16
2490 2880 6.258160 GCAATCCACATATACACTTCAACAC 58.742 40.000 0.00 0.00 0.00 3.32
2491 2881 5.356751 GGCAATCCACATATACACTTCAACA 59.643 40.000 0.00 0.00 0.00 3.33
2492 2882 5.590259 AGGCAATCCACATATACACTTCAAC 59.410 40.000 0.00 0.00 33.74 3.18
2493 2883 5.754782 AGGCAATCCACATATACACTTCAA 58.245 37.500 0.00 0.00 33.74 2.69
2494 2884 5.372343 AGGCAATCCACATATACACTTCA 57.628 39.130 0.00 0.00 33.74 3.02
2495 2885 5.409826 GCTAGGCAATCCACATATACACTTC 59.590 44.000 0.00 0.00 33.74 3.01
2496 2886 5.308825 GCTAGGCAATCCACATATACACTT 58.691 41.667 0.00 0.00 33.74 3.16
2497 2887 4.263068 GGCTAGGCAATCCACATATACACT 60.263 45.833 12.16 0.00 33.74 3.55
2498 2888 4.003648 GGCTAGGCAATCCACATATACAC 58.996 47.826 12.16 0.00 33.74 2.90
2499 2889 3.009033 GGGCTAGGCAATCCACATATACA 59.991 47.826 19.14 0.00 33.74 2.29
2500 2890 3.264450 AGGGCTAGGCAATCCACATATAC 59.736 47.826 19.14 0.00 33.74 1.47
2501 2891 3.531059 AGGGCTAGGCAATCCACATATA 58.469 45.455 19.14 0.00 33.74 0.86
2502 2892 2.352371 AGGGCTAGGCAATCCACATAT 58.648 47.619 19.14 0.00 33.74 1.78
2503 2893 1.819753 AGGGCTAGGCAATCCACATA 58.180 50.000 19.14 0.00 33.74 2.29
2504 2894 0.929244 AAGGGCTAGGCAATCCACAT 59.071 50.000 19.14 0.00 33.74 3.21
2505 2895 0.704076 AAAGGGCTAGGCAATCCACA 59.296 50.000 19.14 0.00 33.74 4.17
2506 2896 1.393603 GAAAGGGCTAGGCAATCCAC 58.606 55.000 19.14 0.00 33.74 4.02
2507 2897 0.258774 GGAAAGGGCTAGGCAATCCA 59.741 55.000 19.14 0.00 33.74 3.41
2508 2898 0.258774 TGGAAAGGGCTAGGCAATCC 59.741 55.000 19.14 20.00 0.00 3.01
2509 2899 2.234143 GATGGAAAGGGCTAGGCAATC 58.766 52.381 19.14 11.99 0.00 2.67
2510 2900 1.570501 TGATGGAAAGGGCTAGGCAAT 59.429 47.619 19.14 2.76 0.00 3.56
2511 2901 0.998928 TGATGGAAAGGGCTAGGCAA 59.001 50.000 19.14 0.00 0.00 4.52
2512 2902 0.998928 TTGATGGAAAGGGCTAGGCA 59.001 50.000 19.14 0.00 0.00 4.75
2513 2903 2.371658 ATTGATGGAAAGGGCTAGGC 57.628 50.000 8.00 8.00 0.00 3.93
2514 2904 2.880890 CGAATTGATGGAAAGGGCTAGG 59.119 50.000 0.00 0.00 0.00 3.02
2515 2905 2.880890 CCGAATTGATGGAAAGGGCTAG 59.119 50.000 0.00 0.00 0.00 3.42
2516 2906 2.507886 TCCGAATTGATGGAAAGGGCTA 59.492 45.455 0.00 0.00 0.00 3.93
2517 2907 1.284785 TCCGAATTGATGGAAAGGGCT 59.715 47.619 0.00 0.00 0.00 5.19
2518 2908 1.405463 GTCCGAATTGATGGAAAGGGC 59.595 52.381 0.00 0.00 35.67 5.19
2519 2909 3.004752 AGTCCGAATTGATGGAAAGGG 57.995 47.619 0.00 0.00 35.67 3.95
2520 2910 5.163513 CAAAAGTCCGAATTGATGGAAAGG 58.836 41.667 0.00 0.00 35.67 3.11
2521 2911 5.163513 CCAAAAGTCCGAATTGATGGAAAG 58.836 41.667 7.54 0.00 35.67 2.62
2522 2912 4.586841 ACCAAAAGTCCGAATTGATGGAAA 59.413 37.500 16.37 0.00 35.67 3.13
2523 2913 4.148838 ACCAAAAGTCCGAATTGATGGAA 58.851 39.130 16.37 0.00 35.67 3.53
2524 2914 3.761897 ACCAAAAGTCCGAATTGATGGA 58.238 40.909 16.37 0.00 0.00 3.41
2525 2915 4.236935 CAACCAAAAGTCCGAATTGATGG 58.763 43.478 10.52 10.52 0.00 3.51
2526 2916 3.674753 GCAACCAAAAGTCCGAATTGATG 59.325 43.478 0.00 0.00 0.00 3.07
2527 2917 3.611530 CGCAACCAAAAGTCCGAATTGAT 60.612 43.478 0.00 0.00 0.00 2.57
2528 2918 2.287308 CGCAACCAAAAGTCCGAATTGA 60.287 45.455 0.00 0.00 0.00 2.57
2529 2919 2.050691 CGCAACCAAAAGTCCGAATTG 58.949 47.619 0.00 0.00 0.00 2.32
2530 2920 1.679153 ACGCAACCAAAAGTCCGAATT 59.321 42.857 0.00 0.00 0.00 2.17
2531 2921 1.314730 ACGCAACCAAAAGTCCGAAT 58.685 45.000 0.00 0.00 0.00 3.34
2532 2922 1.096416 AACGCAACCAAAAGTCCGAA 58.904 45.000 0.00 0.00 0.00 4.30
2533 2923 0.378962 CAACGCAACCAAAAGTCCGA 59.621 50.000 0.00 0.00 0.00 4.55
2534 2924 0.593773 CCAACGCAACCAAAAGTCCG 60.594 55.000 0.00 0.00 0.00 4.79
2535 2925 0.874175 GCCAACGCAACCAAAAGTCC 60.874 55.000 0.00 0.00 34.03 3.85
2536 2926 0.102300 AGCCAACGCAACCAAAAGTC 59.898 50.000 0.00 0.00 37.52 3.01
2537 2927 1.336755 CTAGCCAACGCAACCAAAAGT 59.663 47.619 0.00 0.00 37.52 2.66
2538 2928 1.336755 ACTAGCCAACGCAACCAAAAG 59.663 47.619 0.00 0.00 37.52 2.27
2539 2929 1.066303 CACTAGCCAACGCAACCAAAA 59.934 47.619 0.00 0.00 37.52 2.44
2540 2930 0.665835 CACTAGCCAACGCAACCAAA 59.334 50.000 0.00 0.00 37.52 3.28
2541 2931 1.791103 GCACTAGCCAACGCAACCAA 61.791 55.000 0.00 0.00 37.52 3.67
2542 2932 2.258013 GCACTAGCCAACGCAACCA 61.258 57.895 0.00 0.00 37.52 3.67
2543 2933 1.586154 ATGCACTAGCCAACGCAACC 61.586 55.000 0.00 0.00 41.13 3.77
2544 2934 0.454957 CATGCACTAGCCAACGCAAC 60.455 55.000 0.00 0.00 41.13 4.17
2545 2935 0.605050 TCATGCACTAGCCAACGCAA 60.605 50.000 0.00 0.00 41.13 4.85
2546 2936 0.605050 TTCATGCACTAGCCAACGCA 60.605 50.000 0.00 0.00 41.13 5.24
2547 2937 0.097674 CTTCATGCACTAGCCAACGC 59.902 55.000 0.00 0.00 41.13 4.84
2548 2938 0.097674 GCTTCATGCACTAGCCAACG 59.902 55.000 5.46 0.00 42.31 4.10
2549 2939 1.457346 AGCTTCATGCACTAGCCAAC 58.543 50.000 11.63 0.00 45.94 3.77
2550 2940 2.205022 AAGCTTCATGCACTAGCCAA 57.795 45.000 11.63 0.00 45.94 4.52
2551 2941 3.009723 GTTAAGCTTCATGCACTAGCCA 58.990 45.455 0.00 0.00 45.94 4.75
2552 2942 3.009723 TGTTAAGCTTCATGCACTAGCC 58.990 45.455 0.00 0.11 45.94 3.93
2553 2943 4.685169 TTGTTAAGCTTCATGCACTAGC 57.315 40.909 0.00 8.13 45.94 3.42
2589 2979 2.879233 ATGCCGCCGTACCCCATAG 61.879 63.158 0.00 0.00 0.00 2.23
2596 2986 0.321298 AATATCCCATGCCGCCGTAC 60.321 55.000 0.00 0.00 0.00 3.67
2599 2989 1.750193 AATAATATCCCATGCCGCCG 58.250 50.000 0.00 0.00 0.00 6.46
2600 2990 5.127031 ACATTTAATAATATCCCATGCCGCC 59.873 40.000 0.00 0.00 0.00 6.13
2601 2991 6.035843 CACATTTAATAATATCCCATGCCGC 58.964 40.000 0.00 0.00 0.00 6.53
2603 2993 9.777297 AAAACACATTTAATAATATCCCATGCC 57.223 29.630 0.00 0.00 0.00 4.40
2631 3021 6.128063 ACTCTGCTAGCAAGATCATTTTTCAC 60.128 38.462 24.47 0.00 0.00 3.18
2632 3022 5.942236 ACTCTGCTAGCAAGATCATTTTTCA 59.058 36.000 24.47 0.00 0.00 2.69
2633 3023 6.434018 ACTCTGCTAGCAAGATCATTTTTC 57.566 37.500 24.47 0.00 0.00 2.29
2661 3051 9.220767 AGCCACTTCTTTATTTCTTGTAGTTAG 57.779 33.333 0.00 0.00 0.00 2.34
2681 3071 2.158842 GGAGCAACATCTCATAGCCACT 60.159 50.000 0.00 0.00 34.84 4.00
2692 3082 3.483421 TCATGATGATGGGAGCAACATC 58.517 45.455 0.00 7.96 43.82 3.06
2707 3097 8.609176 GCTTCATTTGTAAAATGCAATCATGAT 58.391 29.630 1.18 1.18 32.23 2.45
2708 3098 7.064847 GGCTTCATTTGTAAAATGCAATCATGA 59.935 33.333 0.00 0.00 32.23 3.07
2785 3176 0.542938 GGGGAGGGCAAGCTTCTTTT 60.543 55.000 0.00 0.00 0.00 2.27
2805 3196 3.252974 ACCGAAACATCTCTAAGCTGG 57.747 47.619 0.00 0.00 0.00 4.85
2806 3197 4.245660 TGAACCGAAACATCTCTAAGCTG 58.754 43.478 0.00 0.00 0.00 4.24
2847 3238 4.250464 TGATAACTGCAAGAGGTAAACCG 58.750 43.478 0.00 0.00 38.25 4.44
2868 3259 5.126869 ACTGGCTAGCATGCTAGATATACTG 59.873 44.000 44.46 31.72 46.56 2.74
2914 3305 8.310382 CAAAGAATTTTGTACATATTCCCACCA 58.690 33.333 19.66 0.00 35.03 4.17
2968 3359 4.996788 AGATTTGCATCATCCCTTCAAC 57.003 40.909 0.00 0.00 0.00 3.18
2969 3360 7.322664 GTTTAAGATTTGCATCATCCCTTCAA 58.677 34.615 0.00 0.00 0.00 2.69
2970 3361 6.127366 GGTTTAAGATTTGCATCATCCCTTCA 60.127 38.462 0.00 0.00 0.00 3.02
2971 3362 6.097412 AGGTTTAAGATTTGCATCATCCCTTC 59.903 38.462 0.00 0.00 0.00 3.46
2972 3363 5.960202 AGGTTTAAGATTTGCATCATCCCTT 59.040 36.000 0.00 0.00 0.00 3.95
2973 3364 5.522641 AGGTTTAAGATTTGCATCATCCCT 58.477 37.500 0.00 0.00 0.00 4.20
2981 3372 2.790433 AGCCGAGGTTTAAGATTTGCA 58.210 42.857 0.00 0.00 0.00 4.08
3005 3396 7.587258 TGTCTTCAGATAAGGAGGAAGATCTA 58.413 38.462 0.00 0.00 45.13 1.98
3036 3427 6.239487 CCTCCGGATACATACCAAGATACAAA 60.239 42.308 3.57 0.00 0.00 2.83
3111 3502 6.978343 TGTCCATTTTCTGTACCGATAAAG 57.022 37.500 0.00 0.00 0.00 1.85
3118 3509 4.437390 CGCATCTTGTCCATTTTCTGTACC 60.437 45.833 0.00 0.00 0.00 3.34
3122 3513 2.749076 TCCGCATCTTGTCCATTTTCTG 59.251 45.455 0.00 0.00 0.00 3.02
3140 3531 3.923017 AATTTCTTGCAACCTTCTCCG 57.077 42.857 0.00 0.00 0.00 4.63
3210 3601 0.817634 TTGTCACCGACCCTTGCTTG 60.818 55.000 0.00 0.00 0.00 4.01
3240 3631 8.041829 AGATAAGATCAAGCAACATATCATGC 57.958 34.615 0.00 1.75 42.87 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.